Domain ID e4p5mG1

Download files:
  • A: a+b two layers
  • X: MHC antigen-recognition domain
  • H: MHC antigen-recognition domain
  • T: MHC antigen-recognition domain
  • F: MHC_II_alpha
UID: 001346545
Type: Automatic domain
Parent: e1hdmA2
Range: G:1-81
PDB: 4p5m
PDB Description: HLA class II histocompatibility antigen, DP alpha 1 chain
UniProt: P20036
Hsap BLAST neighbor: P20036
Species: Homo sapiens

Structure of domain e4p5mG1

Domains in the same chain:

e4p5mG1 G:1-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mG2 G:82-180 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e4p5mA1 A:1-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mA2 A:82-180 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4p5mB2 B:7-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mB1 B:79-189 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4p5mC1 C:1-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mC2 C:82-180 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4p5mD2 D:7-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mD1 D:79-189 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4p5mE1 E:1-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mE2 E:82-180 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4p5mF2 F:7-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mF1 F:79-188 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4p5mG1 G:1-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mG2 G:82-180 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4p5mH2 H:7-81 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e4p5mH1 H:79-188 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4p5mG1 of H-group "MHC antigen-recognition domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1hdmA2 G:X,Y,Z->H:x,y,z MHC antigen-recognition domain Interaction Interface Pymol
e4p5mH1 G:X,Y,Z->H:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4p5mA2 G:-X+1,Y-1/2,-Z->A:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4p5mC1 G:-X+1,Y-1/2,-Z->C:x,y,z MHC antigen-recognition domain Interaction Interface Pymol