ECOD: domain e4p5oH1

Domain ID e4p5oH1

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: ubiquitin

UID:	001299843
Type:	Automatic domain
Parent:	e1v5oA1
Range:	H:1-76
PDB:	4p5o
PDB Description:	NEDD8
UniProt:	Q15843
Hsap BLAST neighbor:	Q15843
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e4p5oH1

Domains in the same chain:

Download Pymol

e4p5oH1	H:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e4p5oA2	A:416-505	Repetitive alpha hairpins	ARM repeat	ARM repeat
e4p5oA1	A:506-603	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins
e4p5oA4	A:604-686	HTH	HTH	winged
e4p5oA3	A:687-776	HTH	HTH	winged
e4p5oB1	B:23-104	RING/U-box-like	RING/U-box-like	RING/U-box
e4p5oC2	C:416-505	Repetitive alpha hairpins	ARM repeat	ARM repeat
e4p5oC1	C:506-603	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins	a+b domain in cullin-like proteins
e4p5oC4	C:604-686	HTH	HTH	winged
e4p5oC3	C:687-776	HTH	HTH	winged
e4p5oD1	D:23-105	RING/U-box-like	RING/U-box-like	RING/U-box
e4p5oE1	E:62-146	EF-hand	EF-hand-related	EF-hand
e4p5oE2	E:147-258	EF-hand	EF-hand-related	EF-hand
e4p5oF1	F:64-146	EF-hand	EF-hand-related	EF-hand
e4p5oF2	F:147-258	EF-hand	EF-hand-related	EF-hand
e4p5oG1	G:1-184	UBC-like	UBC-like	UBC-like
e4p5oH1	H:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4p5oI1	I:1-184	UBC-like	UBC-like	UBC-like
e4p5oK1	K:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e4p5oH1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4p5oG1	H:x,y,z->G:X,Y,Z	UBC-like	Interaction Interface Pymol
e4p5oD1	H:x,y,z->D:X,Y,Z	RING/U-box-like	Interaction Interface Pymol
e4p5oF1	H:x,y,z->F:X-1,Y,Z	EF-hand-related	Interaction Interface Pymol