ECOD: domain e4p9sA1

Domain ID e4p9sA1

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: Aminomethyltransferase beta-barrel domain
F: GCV_T_C

UID:	001628493
Type:	Automatic domain
Parent:	e1pj5A1
Range:	A:762-853
PDB:	4p9s
PDB Description:	Dimethylglycine dehydrogenase
UniProt:	Q63342
Hsap BLAST neighbor:	Q9UI17
Species:	Rattus norvegicus

Domain
In chain context
In PDB context

Structure of domain e4p9sA1

Domains in the same chain:

Download Pymol

e4p9sA3	A:38-257,A:369-458	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e4p9sA2	A:258-368	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e4p9sA4	A:459-761	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e4p9sA1	A:762-853	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e4p9sA3	A:38-257,A:369-458	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e4p9sA2	A:258-368	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e4p9sA4	A:459-761	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e4p9sA1	A:762-853	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain
e4p9sB3	B:38-257,B:369-458	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e4p9sB2	B:258-368	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e4p9sB5	B:459-761	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e4p9sB4	B:762-853	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Structural contacts of domain e4p9sA1 of H-group "RIFT-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1pj5A1	A:X,Y,Z->B:x,y,z	RIFT-related	Interaction Interface Pymol
e4p9sB2	A:x,y,z->B:-X-1,Y-1/2,-Z+1/2	FAD-linked reductases-C	Interaction Interface Pymol