ECOD: domain e4pabB5

Domain ID e4pabB5

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: FAD/NAD(P)-binding domain
F: DAO,FAO_M

UID:	001682894
Type:	Automatic domain
Parent:	e1pj5A4
Range:	B:38-256,B:368-458
Ligands:	FAD SCN
PDB:	4pab
PDB Description:	Dimethylglycine dehydrogenase
UniProt:	Q63342
Hsap BLAST neighbor:	Q9UI17
Species:	Rattus norvegicus

Domain
In chain context
In PDB context

Structure of domain e4pabB5

Domains in the same chain:

Download Pymol

e4pabB5	B:38-256,B:368-458	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e4pabB3	B:258-368	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e4pabB6	B:463-761	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e4pabB4	B:762-861	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e4pabA5	A:38-257,A:369-458	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e4pabA3	A:258-368	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e4pabA4	A:463-761	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e4pabA2	A:762-860	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain
e4pabB5	B:38-256,B:368-458	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e4pabB3	B:258-368	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e4pabB6	B:463-761	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e4pabB4	B:762-861	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Structural contacts of domain e4pabB5 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4pabA5	B:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e4pabA5	B:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e4pabA5	B:x,y,z->A:X-1,Y,Z	Rossmann-related	Interaction Interface Pymol
e4pabA3	B:x,y,z->A:X-1,Y,Z	FAD-linked reductases-C	Interaction Interface Pymol
e4pabA3	B:-X+1,Y-1/2,-Z+1->A:x,y,z	FAD-linked reductases-C	Interaction Interface Pymol