Domain ID e4pbrA1

Download files:
  • A: a/b three-layered sandwiches
  • X: HUP domain-like
  • H: HUP domains
  • T: HUP domains
  • F: tRNA-synt_1b
UID: 001318520
Type: Automatic domain
Parent: e1j1uA1
Range: A:1-310
Ligands: 2L7 GOL PEG
PDB: 4pbr
PDB Description: Tyrosine--tRNA ligase
UniProt: Q57834
Hsap BLAST neighbor: P54577
Species:

Structure of domain e4pbrA1

Domains in the same chain:

e4pbrA1 A:1-310 HUP domain-like HUP domains HUP domains

Domains in the same PDB:

e4pbrA1 A:1-310 HUP domain-like HUP domains HUP domains

Structural contacts of domain e4pbrA1 of H-group "HUP domains":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4pbrA1 A:x,y,z->A:-Y+1,-X+1,-Z-1/2 HUP domains Interaction Interface Pymol
e4pbrA1 A:-Y+1,-X+1,-Z-1/2->A:x,y,z HUP domains Interaction Interface Pymol
e4pbrA1 A:x,y,z->A:-Y+1,-X+1,-Z+1/2 HUP domains Interaction Interface Pymol
e4pbrA1 A:-Y+1,-X+1,-Z+1/2->A:x,y,z HUP domains Interaction Interface Pymol
e4pbrA1 A:x,y,z->A:-Y+3/2,X-1/2,Z-1/4 HUP domains Interaction Interface Pymol
e4pbrA1 A:-Y+3/2,X-1/2,Z-1/4->A:x,y,z HUP domains Interaction Interface Pymol
e4pbrA1 A:x,y,z->A:-Y+3/2,X-1/2,Z+3/4 HUP domains Interaction Interface Pymol
e4pbrA1 A:-Y+3/2,X-1/2,Z+3/4->A:x,y,z HUP domains Interaction Interface Pymol
e4pbrA1 A:x,y,z->A:-X+3/2,Y-1/2,-Z-1/4 HUP domains Interaction Interface Pymol
e4pbrA1 A:-X+3/2,Y-1/2,-Z-1/4->A:x,y,z HUP domains Interaction Interface Pymol