ECOD: domain e4pg3A1

Domain ID e4pg3A1

A: a+b three layers
X: Class II aaRS and biotin synthetases
H: Class II aaRS and biotin synthetases
T: Class II aaRS and biotin synthetases
F: tRNA-synt_2

UID:	001314241
Type:	Automatic domain
Parent:	e1e1oA2
Range:	A:224-581
PDB:	4pg3
PDB Description:	Lysine--tRNA ligase
UniProt:	Q8IDJ8
Hsap BLAST neighbor:	Q15046
Species:

Domain
In chain context
In PDB context

Structure of domain e4pg3A1

Domains in the same chain:

Download Pymol

e4pg3A2	A:80-223	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4pg3A1	A:224-581	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases

Domains in the same PDB:

e4pg3A2	A:80-223	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4pg3A1	A:224-581	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e4pg3B2	B:80-223	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4pg3B1	B:223-581	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e4pg3C2	C:80-223	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4pg3C1	C:223-581	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e4pg3D2	D:80-223	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4pg3D1	D:223-581	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases

Structural contacts of domain e4pg3A1 of H-group "Class II aaRS and biotin synthetases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4pg3B1	A:X,Y,Z->B:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e4pg3B2	A:X,Y,Z->B:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e4pg3D1	A:X,Y,Z-1->D:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e4pg3D2	A:X,Y,Z-1->D:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e4pg3D2	A:-X-1/2,Y-1/2,-Z-1->D:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e4pg3A2	A:X,Y-1,Z->A:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol