ECOD: domain e4pgpD2

Domain ID e4pgpD2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: DctP

UID:	001525887
Type:	Automatic domain
Parent:	e3gyyA2
Range:	D:151-237
Ligands:	IAC
PDB:	4pgp
PDB Description:	Extracellular solute-binding protein, family 7
UniProt:	Q315G1
Species:

Domain
In chain context
In PDB context

Structure of domain e4pgpD2

Domains in the same chain:

Download Pymol

e4pgpD1	D:32-150,D:238-341	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4pgpD2	D:151-237	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e4pgpA1	A:32-150,A:238-339	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4pgpA2	A:151-237	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4pgpB1	B:32-150,B:238-340	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4pgpB2	B:151-237	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4pgpC1	C:32-150,C:238-341	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4pgpC2	C:151-237	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4pgpD1	D:32-150,D:238-341	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e4pgpD2	D:151-237	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e4pgpD2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4pgpC2	D:-X+2,Y-1/2,-Z-2->C:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4pgpC1	D:-X+2,Y-1/2,-Z-2->C:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e4pgpB1	D:-X+2,Y-1/2,-Z-2->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol