ECOD: domain e4plnB4

Domain ID e4plnB4

A: beta sandwiches
X: jelly-roll
H: Concanavalin A-like
T: Galactose-binding domain-like
F: Laminin_N

UID:	001299299
Type:	Automatic domain
Parent:	e3zygA2
Range:	B:40-287
Ligands:	CA NAG
PDB:	4pln
PDB Description:	Netrin-1
UniProt:	Q90922
Hsap BLAST neighbor:	O95631
Species:	Gallus gallus

Domains in the same chain:

Download Pymol

e4plnB4	B:40-287	jelly-roll	Concanavalin A-like	Galactose-binding domain-like
e4plnB2	B:285-339	EGF-like	EGF-related	EGF/Laminin
e4plnB1	B:340-403	EGF-like	EGF-related	EGF/Laminin
e4plnB3	B:404-456	EGF-like	EGF-related	EGF/Laminin

Domains in the same PDB:

e4plnA4	A:40-287	jelly-roll	Concanavalin A-like	Galactose-binding domain-like
e4plnA2	A:285-339	EGF-like	EGF-related	EGF/Laminin
e4plnA1	A:340-403	EGF-like	EGF-related	EGF/Laminin
e4plnA3	A:404-456	EGF-like	EGF-related	EGF/Laminin
e4plnB4	B:40-287	jelly-roll	Concanavalin A-like	Galactose-binding domain-like
e4plnB2	B:285-339	EGF-like	EGF-related	EGF/Laminin
e4plnB1	B:340-403	EGF-like	EGF-related	EGF/Laminin
e4plnB3	B:404-456	EGF-like	EGF-related	EGF/Laminin
e4plnC1	C:763-864	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4plnC2	C:865-967	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4plnD2	D:763-864	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4plnD1	D:865-966	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4plnB4 of H-group "Concanavalin A-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4plnA1	B:x,y,z->A:X,Y,Z	EGF-related	Interaction Interface Pymol
e4plnC2	B:x,y,z->C:-X+1,Y-1/2,-Z	Immunoglobulin-related	Interaction Interface Pymol
e4plnC1	B:x,y,z->C:-X+1,Y-1/2,-Z	Immunoglobulin-related	Interaction Interface Pymol
e4plnD2	B:X,Y,Z->D:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e4plnA2	B:x,y,z->A:-X,Y-1/2,-Z	EGF-related	Interaction Interface Pymol
e4plnA1	B:x,y,z->A:-X,Y-1/2,-Z	EGF-related	Interaction Interface Pymol