Domain ID e4poqJ1

Download files:
  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Polyoma_coat
UID: 001285228
Type: Automatic domain
Parent: e1vpsA1
Range: J:32-304
Ligands: CA EDO IPA
PDB: 4poq
PDB Description: VP1
UniProt: E9NQ90
Species: Human polyomavirus 9

Structure of domain e4poqJ1

Domains in the same chain:

e4poqJ1 J:32-304 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)

Domains in the same PDB:

e4poqA1 A:33-303 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqB1 B:33-302 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqC1 C:33-302 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqD1 D:33-303 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqE1 E:33-302 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqF1 F:33-304 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqG1 G:33-303 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqH1 H:31-304 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqI1 I:31-302 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4poqJ1 J:32-304 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)

Structural contacts of domain e4poqJ1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4poqI1 J:x,y,z->I:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4poqF1 J:x,y,z->F:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4poqF1 J:X-1/2,-Y-1/2,-Z->F:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4poqE1 J:x,y,z->E:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4poqD1 J:X-1/2,-Y-1/2,-Z->D:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4poqB1 J:-X+1/2,-Y,Z-1/2->B:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol