Domain ID e4pqkD1

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: SBP_bac_1
UID: 001523554
Type: Automatic domain
Parent: e4pqkB3
Range: D:111-260
Ligands: MLR
PDB: 4pqk
PDB Description: Maltose ABC transporter periplasmic protein, Truncated replication protein RepA
Species: Staphylococcus aureus

Structure of domain e4pqkD1

Domains in the same chain:

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e4pqkD3 D:3-110,D:261-367 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkD1 D:111-260 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkD2 D:368-479 DnaD domain DnaD domain DnaD domain

Domains in the same PDB:

e4pqkA3 A:2-110,A:261-367 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkA1 A:111-260 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkA2 A:368-479 DnaD domain DnaD domain DnaD domain
e4pqkB1 B:2-110,B:261-367 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkB3 B:111-260 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkB2 B:368-479 DnaD domain DnaD domain DnaD domain
e4pqkC4 C:3-110,C:261-367 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkC3 C:111-260 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkC2 C:368-478 DnaD domain DnaD domain DnaD domain
e4pqkD3 D:3-110,D:261-367 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkD1 D:111-260 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4pqkD2 D:368-479 DnaD domain DnaD domain DnaD domain

Structural contacts of domain e4pqkD1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4pqkC2 D:x,y,z->C:X,Y,Z-1 DnaD domain Interaction Interface Pymol
e4pqkB2 D:X,Y-1,Z->B:x,y,z DnaD domain Interaction Interface Pymol
e4pqkB3 D:X,Y-1,Z->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e4pqkC4 D:x,y,z->C:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol