Domain ID e4pquD2

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 001297320
Type: Automatic domain
Parent: e2zd1B1
Range: D:242-315
Ligands: SO4
PDB: 4pqu
PDB Description: HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT
UniProt: P03366
Species:

Structure of domain e4pquD2

Domains in the same chain:

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e4pquD1 D:3-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4pquD2 D:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4pquD3 D:316-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e4pquA2 A:1-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4pquA4 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4pquA3 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4pquA1 A:429-545 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4pquB1 B:4-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4pquB2 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4pquB3 B:316-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4pquC2 C:1-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4pquC4 C:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4pquC3 C:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4pquC1 C:429-545 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4pquD1 D:3-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4pquD2 D:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4pquD3 D:316-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e4pquD2 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4pquC1 D:x,y,z->C:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e4pquB3 D:x,y,z->B:-X,Y-1/2,-Z+1 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e4pquB1 D:x,y,z->B:-X,Y-1/2,-Z+1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4pquA3 D:x,y,z->A:-X,Y-1/2,-Z+1 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e4pquA4 D:x,y,z->A:X,Y-1,Z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol