Domain ID e4q85D1

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  • A: alpha superhelices
  • X: Repetitive alpha hairpins
  • H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
  • T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
  • F: YcaO_C
UID: 001325064
Type: Automatic domain
Parent: e4q85B4
Range: D:407-583
PDB: 4q85
PDB Description: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
UniProt: P75838
Species:

Structure of domain e4q85D1

Domains in the same chain:

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e4q85D4 D:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85D3 D:104-213,D:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85D2 D:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85D1 D:407-583 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain

Domains in the same PDB:

e4q85A4 A:12-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85A3 A:104-213,A:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85A2 A:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85A1 A:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q85B1 B:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85B2 B:104-213,B:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85B3 B:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85B4 B:407-584 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q85C4 C:14-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85C3 C:104-213,C:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85C2 C:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85C1 C:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q85D4 D:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85D3 D:104-213,D:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85D2 D:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85D1 D:407-583 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q85E4 E:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85E3 E:104-213,E:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85E2 E:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85E1 E:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q85F4 F:3-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85F3 F:104-213,F:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85F2 F:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85F1 F:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q85G4 G:25-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85G2 G:104-213,G:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85G1 G:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85G3 G:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q85H4 H:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85H3 H:104-213,H:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85H2 H:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q85H1 H:407-584 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain

Structural contacts of domain e4q85D1 of H-group "Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4q85C2 D:x,y,z->C:X,Y,Z Heterocyclase TruD C-terminal domain Interaction Interface Pymol
e4q85B4 D:x,y,z->B:X,Y,Z-1 Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Interaction Interface Pymol
e4q85B2 D:x,y,z->B:X,Y,Z-1 Heterocyclase TruD C-terminal domain Interaction Interface Pymol
e4q85B1 D:x,y,z->B:X,Y,Z-1 Heterocyclase TruD C-terminal domain Interaction Interface Pymol