Domain ID e4q86H4

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  • A: a+b two layers
  • X: dsRBD-like
  • H: Heterocyclase TruD C-terminal domain
  • T: Heterocyclase TruD C-terminal domain
  • F: YcaO
UID: 001325155
Type: Automatic domain
Parent: e4bs9A4
Range: H:2-103
Ligands: AMP MG
PDB: 4q86
PDB Description: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
UniProt: P75838
Species:

Structure of domain e4q86H4

Domains in the same chain:

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e4q86H4 H:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86H3 H:104-213,H:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86H2 H:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86H1 H:407-584 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain

Domains in the same PDB:

e4q86A4 A:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86A3 A:104-213,A:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86A2 A:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86A1 A:407-583 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q86B4 B:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86B3 B:104-213,B:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86B2 B:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86B1 B:407-584 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q86C4 C:12-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86C3 C:104-213,C:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86C2 C:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86C1 C:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q86D4 D:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86D3 D:104-213,D:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86D2 D:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86D1 D:407-583 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q86E4 E:4-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86E3 E:104-213,E:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86E2 E:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86E1 E:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q86F4 F:8-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86F3 F:104-213,F:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86F2 F:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86F1 F:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q86G4 G:7-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86G3 G:104-213,G:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86G2 G:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86G1 G:407-581 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain
e4q86H4 H:2-103 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86H3 H:104-213,H:347-406 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86H2 H:214-346 dsRBD-like Heterocyclase TruD C-terminal domain Heterocyclase TruD C-terminal domain
e4q86H1 H:407-584 Repetitive alpha hairpins Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain

Structural contacts of domain e4q86H4 of H-group "Heterocyclase TruD C-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4q86E3 H:x,y,z->E:X,Y,Z Heterocyclase TruD C-terminal domain Interaction Interface Pymol
e4q86E4 H:x,y,z->E:X,Y,Z Heterocyclase TruD C-terminal domain Interaction Interface Pymol
e4q86B4 H:X,Y-1,Z->B:x,y,z Heterocyclase TruD C-terminal domain Interaction Interface Pymol