Domain ID e4qd2J2

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: Cadherin
UID: 001298689
Type: Automatic domain
Parent: e2omzB1
Range: J:2-101
Ligands: CA
PDB: 4qd2
PDB Description: CADHERIN-1
UniProt: P09803
Hsap BLAST neighbor: P12830
Species: Mus musculus

Structure of domain e4qd2J2

Domains in the same chain:

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e4qd2J2 J:2-101 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4qd2J1 J:102-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e4qd2A2 A:380-492 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e4qd2A1 A:493-626 jelly-roll Concanavalin A-like Galactose-binding domain-like
e4qd2B1 B:4-146 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2C2 C:9-151 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2C1 C:148-294 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2D2 D:9-151 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2D1 D:148-294 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2E2 E:2-101 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4qd2E1 E:102-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4qd2F2 F:380-492 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e4qd2F1 F:493-626 jelly-roll Concanavalin A-like Galactose-binding domain-like
e4qd2G1 G:4-146 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2H2 H:9-151 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2H1 H:148-294 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2I2 I:9-151 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2I1 I:148-294 beta-Trefoil beta-Trefoil beta-Trefoil
e4qd2J2 J:2-101 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4qd2J1 J:102-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4qd2J2 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4qd2F1 J:x,y,z->F:X,Y,Z Concanavalin A-like Interaction Interface Pymol
e4qd2F2 J:x,y,z->F:X,Y,Z Galactose-binding domain-like Interaction Interface Pymol
e4qd2G1 J:x,y,z->G:X,Y,Z beta-Trefoil Interaction Interface Pymol
e4qd2D2 J:X,Y-1,Z->D:x,y,z beta-Trefoil Interaction Interface Pymol
e4qd2E2 J:X,Y-1,Z->E:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4qd2I2 J:x,y,z->I:X,Y,Z beta-Trefoil Interaction Interface Pymol