ECOD: domain e4r4fA1

Domain ID e4r4fA1

A: a+b two layers
X: gp120 inner domain
H: gp120 inner domain
T: gp120 inner domain
F: GP120

UID:	001829761
Type:	Automatic domain
Parent:	e4rfnG2
Range:	A:45-255,A:474-492
Ligands:	NAG
PDB:	4r4f
PDB Description:	HIV-1 Env gp120
UniProt:	P35961
Species:	Human immunodeficiency virus 1

Domains in the same chain:

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e4r4fA1	A:45-255,A:474-492	gp120 inner domain	gp120 inner domain	gp120 inner domain
e4r4fA2	A:256-473	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e4r4fA1	A:45-255,A:474-492	gp120 inner domain	gp120 inner domain	gp120 inner domain
e4r4fA2	A:256-473	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e4r4fH2	H:2-113	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4r4fH1	H:114-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4r4fL2	L:2-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4r4fL1	L:108-211	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4r4fR1	R:1-28	omega toxin-like	omega toxin-related	Scorpion toxin-like

Structural contacts of domain e4r4fA1 of H-group "gp120 inner domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4r4fR1	A:X,Y,Z->R:x,y,z	omega toxin-related	Interaction Interface Pymol
e4r4fA1	A:x,y,z->A:-X-1/2,Y,-Z+1/2	gp120 inner domain	Interaction Interface Pymol
e4r4fA1	A:-X-1/2,Y,-Z+1/2->A:x,y,z	gp120 inner domain	Interaction Interface Pymol
e4r4fA1	A:x,y,z->A:X,-Y-1/2,-Z+1/2	gp120 inner domain	Interaction Interface Pymol
e4r4fA1	A:X,-Y-1/2,-Z+1/2->A:x,y,z	gp120 inner domain	Interaction Interface Pymol
e4r4fA1	A:x,y,z->A:-X-1/2,-Y-1/2,Z	gp120 inner domain	Interaction Interface Pymol
e4r4fA1	A:-X-1/2,-Y-1/2,Z->A:x,y,z	gp120 inner domain	Interaction Interface Pymol