Domain ID e4tomJ1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 001317256
Type: Automatic domain
Parent: e4v19N1
Range: J:1-142
Ligands: MG
PDB: 4tom
PDB Description:
Hsap BLAST neighbor: Q9BYD1
Species:

Structure of domain e4tomJ1

Domains in the same chain:

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e4tomJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e4tom01 0:2-57 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4tom21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4tom31 3:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4tom41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4tom52 5:19-61,5:144-225 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e4tom51 5:62-143 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e4tomC1 C:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4tomC2 C:126-272 SH3 SH3 SH3
e4tomE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4tomF1 F:2-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4tomG1 G:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4tomG2 G:83-177 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4tomH2 H:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e4tomI1 I:2-72 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e4tomI2 I:73-142 HTH HTH Ribosomal protein L11, C-terminal domain
e4tomJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4tomK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4tomN1 N:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4tomO1 O:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4tomR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4tomS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4tomT1 T:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4tomU1 U:2-103 SH3 SH3 SH3
e4tomV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4tomW1 W:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4tomX1 X:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4tomY1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4tomZ1 Z:2-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e4tomJ1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4v19N1 J:X,Y,Z->Q:x,y,z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e4v19N1 J:x,y,z->D:X,Y,Z Ribosomal protein L13 and L16-A Interaction Interface Pymol