Domain ID e4tpdJ1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 001317826
Type: Automatic domain
Parent: e4v19N1
Range: J:1-142
Ligands: MG
PDB: 4tpd
PDB Description:
Hsap BLAST neighbor: Q9BYD1
Species:

Structure of domain e4tpdJ1

Domains in the same chain:

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e4tpdJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e4tpd01 0:2-57 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4tpd21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4tpd31 3:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4tpd41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4tpd52 5:19-61,5:144-225 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e4tpd51 5:62-143 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e4tpdC1 C:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4tpdC2 C:126-272 SH3 SH3 SH3
e4tpdE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4tpdF1 F:2-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4tpdG1 G:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4tpdG2 G:83-177 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4tpdH2 H:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e4tpdI1 I:2-72 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e4tpdI2 I:73-142 HTH HTH Ribosomal protein L11, C-terminal domain
e4tpdJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4tpdK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4tpdN1 N:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4tpdO1 O:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4tpdR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4tpdS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4tpdT1 T:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4tpdU1 U:2-103 SH3 SH3 SH3
e4tpdV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4tpdW1 W:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4tpdX1 X:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4tpdY1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4tpdZ1 Z:2-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e4tpdJ1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4v19N1 J:X,Y,Z->Q:x,y,z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e4v19N1 J:x,y,z->D:X,Y,Z Ribosomal protein L13 and L16-A Interaction Interface Pymol