Domain ID e4tpfE1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 001317876
Type: Automatic domain
Parent: e1dmgA1
Range: E:1-201
Ligands: MG
PDB: 4tpf
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e4tpfE1

Domains in the same chain:

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e4tpfE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e4tpf01 0:2-57 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4tpf21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4tpf31 3:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4tpf41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4tpfC1 C:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4tpfC2 C:126-272 SH3 SH3 SH3
e4tpfE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4tpfF1 F:2-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4tpfG1 G:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4tpfG2 G:83-177 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4tpfH2 H:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e4tpfI1 I:2-72 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e4tpfI2 I:73-142 HTH HTH Ribosomal protein L11, C-terminal domain
e4tpfJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4tpfK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4tpfN1 N:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4tpfO1 O:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4tpfR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4tpfS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4tpfT1 T:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4tpfU1 U:2-103 SH3 SH3 SH3
e4tpfV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4tpfW1 W:11-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4tpfX1 X:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4tpfY1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4tpfZ1 Z:2-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e4tpfE1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 E:X,Y,Z->L:x,y,z Ribosomal protein L4 Interaction Interface Pymol
e1dmgA1 E:X,Y,Z->Q:x,y,z Ribosomal protein L4 Interaction Interface Pymol