Domain ID e4u5dB1

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Lig_chan-Glu_bd
UID: 001625986
Type: Automatic domain
Parent: e1mqiA3
Range: B:384-497,B:731-789
Ligands: FWF KAI
PDB: 4u5d
PDB Description: Glutamate receptor 2
UniProt: P19491
Hsap BLAST neighbor: P42262
Species: Rattus norvegicus

Structure of domain e4u5dB1

Domains in the same chain:

Download Pymol

e4u5dB5 B:6-111,B:244-383 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dB2 B:112-243 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dB1 B:384-497,B:731-789 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dB3 B:498-505,B:632-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dB4 B:506-542,B:597-627,B:790-814 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels

Domains in the same PDB:

e4u5dA3 A:6-111,A:244-382 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dA1 A:112-243 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dA2 A:383-497,A:731-789 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dA5 A:498-505,A:632-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dA4 A:506-542,A:597-627,A:790-814 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4u5dB5 B:6-111,B:244-383 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dB2 B:112-243 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dB1 B:384-497,B:731-789 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dB3 B:498-505,B:632-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dB4 B:506-542,B:597-627,B:790-814 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4u5dC2 C:6-111,C:244-381 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dC1 C:112-243 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dC3 C:382-497,C:731-789 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dC4 C:498-505,C:632-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dC5 C:506-542,C:597-627,C:790-814 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4u5dD5 D:6-111,D:244-381 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dD2 D:112-243 Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I
e4u5dD3 D:382-497,D:731-789 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dD1 D:498-505,D:632-730 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e4u5dD4 D:506-542,D:597-627,D:790-814 Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels
e4u5dE1 E:2-86 con-ikot-ikot toxin con-ikot-ikot toxin con-ikot-ikot toxin
e4u5dF1 F:2-86 con-ikot-ikot toxin con-ikot-ikot toxin con-ikot-ikot toxin

Structural contacts of domain e4u5dB1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4u5dA4 B:x,y,z->A:X,Y,Z Voltage-gated ion channels Interaction Interface Pymol
e4u5dA5 B:x,y,z->A:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e4u5dC3 B:X,Y,Z->C:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e4u5dC4 B:X,Y,Z->C:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e4u5dF1 B:X,Y,Z->F:x,y,z con-ikot-ikot toxin Interaction Interface Pymol