Domain ID e5wykE11

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  • A: a/b three-layered sandwiches
  • X: alpha/beta knot
  • H: alpha/beta knot
  • T: alpha/beta knot
  • F: EMG1
UID: 002049768
Type: Automatic domain
Parent: e3bbdA1
Range: E1:28-252
PDB: 5wyk
PDB Description: Ribosomal RNA small subunit methyltransferase NEP1
UniProt: Q06287
Hsap BLAST neighbor: Q92979
Species:

Structure of domain e5wykE11

Domains in the same chain:

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e5wykE11 E1:28-252 alpha/beta knot alpha/beta knot alpha/beta knot

Domains in the same PDB:

e5wyk3B1 3B:84-322 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e5wyk3C1 3C:84-322 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e5wyk3D2 3D:168-298 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e5wyk3D1 3D:288-329,3D:370-417 HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain
e5wyk3D3 3D:8-167 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e5wyk3E1 3E:285-403 HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain
e5wyk3E3 3E:155-284 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e5wyk3E2 3E:3-18,3E:38-154 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e5wyk3F1 3F:130-361,3F:398-442,3F:474-570 beta-propeller-like beta-propeller 7-bladed
e5wyk3G1 3G:5-126 Bacillus chorismate mutase-like L30e-like L30e-like
e5wyk3H1 3H:5-126 Bacillus chorismate mutase-like L30e-like L30e-like
e5wykAE1 AE:3-421 Repetitive alpha hairpins ARM repeat ARM repeat
e5wykB11 B1:929-1016 cradle loop barrel RIFT-related Alanine racemase-C
e5wykB13 B1:33-214 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e5wykB12 B1:818-928 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e5wykB14 B1:215-284,B1:614-636,B1:787-817 cradle loop barrel RIFT-related Alanine racemase-C
e5wykBA3 BA:735-852 Repetitive alpha hairpins C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13
e5wykBA2 BA:343-620,BA:679-734 beta-propeller-like beta-propeller 7-bladed
e5wykBA4 BA:1-222,BA:245-343 beta-propeller-like beta-propeller 7-bladed
e5wykBB3 BB:41-275,BB:321-386 beta-propeller-like beta-propeller 7-bladed
e5wykBB4 BB:11-40,BB:386-685 beta-propeller-like beta-propeller 7-bladed
e5wykBB2 BB:747-773,BB:793-913 Repetitive alpha hairpins C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13
e5wykBD1 BD:235-591 beta-propeller-like beta-propeller 7-bladed
e5wykBE2 BE:350-671,BE:793-805 beta-propeller-like beta-propeller 7-bladed
e5wykBE3 BE:814-939 Repetitive alpha hairpins C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13
e5wykBE1 BE:20-349 beta-propeller-like beta-propeller 7-bladed
e5wykCA1 CA:3-189 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e5wykCB5 CB:357-514 HhH/H2TH SAM/DNA-glycosylase PAP/OAS1 substrate-binding domain
e5wykCB2 CB:1092-1237 Alpha-beta plaits PAP/Archaeal CCA-adding enzyme, C-terminal domain PAP/Archaeal CCA-adding enzyme, C-terminal domain
e5wykCB1 CB:81-356 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e5wykCB4 CB:515-698 Alpha-beta plaits PAP/Archaeal CCA-adding enzyme, C-terminal domain PAP/Archaeal CCA-adding enzyme, C-terminal domain
e5wykCB6 CB:906-983,CB:1010-1091 HhH/H2TH SAM/DNA-glycosylase PAP/OAS1 substrate-binding domain
e5wykCB3 CB:699-905 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e5wykE11 E1:28-252 alpha/beta knot alpha/beta knot alpha/beta knot
e5wykE21 E2:28-252 alpha/beta knot alpha/beta knot alpha/beta knot
e5wykK11 K1:120-212 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e5wykK12 K1:38-119 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e5wykMA1 MA:29-161 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5wykMB1 MB:84-267 Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS
e5wykP11 P1:178-266 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e5wykP12 P1:94-177 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e5wykR12 R1:7-182,R1:287-361 IF3-like EPT/RTPC-like EPT/RTPC-like
e5wykR11 R1:183-287 Thioredoxin-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain RNA 3'-terminal phosphate cyclase, RPTC, insert domain
e5wykSc1 Sc:4-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e5wykSC1 SC:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e5wykSC2 SC:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e5wykSd1 Sd:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5wykSf1 Sf:23-52 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e5wykSF2 SF:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5wykSF3 SF:176-245 SH3 SH3 SH3
e5wykSF1 SF:9-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5wykSG1 SG:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e5wykSI1 SI:118-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5wykSI2 SI:4-98 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e5wykSJ1 SJ:2-123,SJ:153-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e5wykSK1 SK:12-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e5wykSM1 SM:2-142 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5wykSO2 SO:83-142 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e5wykSO1 SO:9-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e5wykSP1 SP:11-122 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e5wykSR1 SR:3-127 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e5wykSX2 SX:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e5wykSX1 SX:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e5wykSY1 SY:43-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e5wykSZ1 SZ:2-102 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e5wykU41 U4:57-182 HAD domain-like HAD domain-related PIN domain-like
e5wykU51 U5:64-178 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e5wykU52 U5:8-63,U5:179-255 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1