ECOD: domain e5xjcO2

Domain ID e5xjcO2

A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: FYVE/PHD zinc finger
F: STL11_N

UID:	002088991
Type:	Automatic domain
Parent:	e3jb9a2
Range:	O:19-89
Ligands:	ZN
PDB:	5xjc
PDB Description:	Pre-mRNA-splicing factor RBM22
UniProt:	Q9NW64
Hsap BLAST neighbor:	Q9NW64
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e5xjcO2	O:19-89	RING/U-box-like	RING/U-box-like	FYVE/PHD zinc finger
e5xjcO3	O:90-220	CCCH zinc finger	CCCH zinc finger	CCCH zinc finger
e5xjcO1	O:221-303	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Domains in the same PDB:

e5xjca1	a:3-85	SH3	SH3	SH3
e5xjcA2	A:25-810	Pre-mRNA-splicing factor 8 N-terminal domain	Pre-mRNA-splicing factor 8 N-terminal domain	Pre-mRNA-splicing factor 8 N-terminal domain
e5xjcA5	A:811-1182	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e5xjcA4	A:1183-1502	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e5xjcA6	A:1503-1754	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease-like
e5xjcA3	A:1755-2015	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e5xjcA1	A:2067-2314	Cytidine deaminase-like	Cytidine deaminase-like	Cytidine deaminase-like
e5xjcb1	b:4-89	SH3	SH3	SH3
e5xjcc1	c:1-82	SH3	SH3	SH3
e5xjcC3	C:56-439	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcC4	C:440-580	cradle loop barrel	RIFT-related	Alanine racemase-C
e5xjcC5	C:581-659	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e5xjcC1	C:660-828	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e5xjcC2	C:829-943	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e5xjcd1	d:20-116	SH3	SH3	SH3
e5xjcD12	D:404-682	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcD11	D:683-886	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcD10	D:887-993	HTH	HTH	winged
e5xjcD7	D:994-1125	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like
e5xjcD5	D:1126-1180	HhH/H2TH	SAM-like subdomain in Sec63-like proteins	SAM-like subdomain in Sec63-like proteins
e5xjcD3	D:1181-1311	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e5xjcD1	D:1312-1520	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcD6	D:1521-1722	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcD9	D:1723-1824	HTH	HTH	winged
e5xjcD4	D:1825-1957	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like
e5xjcD2	D:1958-2015	HhH/H2TH	SAM-like subdomain in Sec63-like proteins	SAM-like subdomain in Sec63-like proteins
e5xjcD8	D:2016-2125	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e5xjce1	e:14-92	SH3	SH3	SH3
e5xjcE1	E:58-356	beta-propeller-like	beta-propeller	7-bladed
e5xjcf1	f:2-75	SH3	SH3	SH3
e5xjcg1	g:3-76	SH3	SH3	SH3
e5xjch1	h:3-85	SH3	SH3	SH3
e5xjci1	i:4-89	SH3	SH3	SH3
e5xjcI1	I:156-738,I:740-819	Repetitive alpha hairpins	ARM repeat	ARM repeat
e5xjcj1	j:1-82	SH3	SH3	SH3
e5xjcJ1	J:214-802	Repetitive alpha hairpins	ARM repeat	ARM repeat
e5xjck1	k:20-116	SH3	SH3	SH3
e5xjcl1	l:14-92	SH3	SH3	SH3
e5xjcm1	m:2-75	SH3	SH3	SH3
e5xjcn1	n:3-76	SH3	SH3	SH3
e5xjcN1	N:1-143	Pre-mRNA-splicing factor BUD31	Pre-mRNA-splicing factor BUD31	Pre-mRNA-splicing factor BUD31
e5xjco1	o:2-163	Single-stranded right-handed beta-helix	Leucine-rich repeats	Leucine-rich repeats
e5xjcO2	O:19-89	RING/U-box-like	RING/U-box-like	FYVE/PHD zinc finger
e5xjcO3	O:90-220	CCCH zinc finger	CCCH zinc finger	CCCH zinc finger
e5xjcO1	O:221-303	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e5xjcp1	p:3-96	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e5xjcQ3	Q:19-415	Repetitive alpha hairpins	ARM repeat	ARM repeat
e5xjcQ2	Q:416-492,Q:660-706,Q:795-1134	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcQ1	Q:493-659	cradle loop barrel	RIFT-related	Alanine racemase-C
e5xjcQ4	Q:707-753,Q:773-794	Spliceosomal helicase Aquarius insert domain	Spliceosomal helicase Aquarius insert domain	Spliceosomal helicase Aquarius insert domain
e5xjcQ5	Q:1135-1381	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcS1	S:8-166	Cyclophilin-like	Cyclophilin-like	Cyclophilin-like
e5xjcT1	T:184-496	beta-propeller-like	beta-propeller	7-bladed
e5xjcu2	u:22-242	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcu1	u:243-411	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e5xjcv1	v:5-148	Mago nashi protein	Mago nashi protein	Mago nashi protein
e5xjcV2	V:149-406	Repetitive alpha hairpins	ARM repeat	ARM repeat
e5xjcV1	V:448-648	Repetitive alpha hairpins	ARM repeat	ARM repeat
e5xjcw1	w:64-154	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e5xjcW1	W:83-578	beta-propeller-like	beta-propeller	7-bladed
e5xjcZ1	Z:62-196	CCHC-type 1 zinc finger	CCHC-type 1 zinc finger	CCHC-type 1 zinc finger
e5xjcZ2	Z:265-371	Prp8-binding region of SLU7	Prp8-binding region of SLU7	Prp8-binding region of SLU7