Domain ID e6nmdA6

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  • A: beta barrels
  • X: OB-fold
  • H: Small protein B (SmpB)
  • T: Small protein B (SmpB)
  • F: Unmapped domains
UID: 002496927
Type: Automatic domain
Parent: e5id6A1
Range: A:1-46,A:515-583,A:679-809
Ligands: MG
PDB: 6nmd
PDB Description: Cpf1
UniProt: A0A182DWE3
Species: Lachnospiraceae bacterium ND2006

Structure of domain e6nmdA6

Domains in the same chain:

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e6nmdA6 A:1-46,A:515-583,A:679-809 OB-fold Small protein B (SmpB) Small protein B (SmpB)
e6nmdA3 A:47-289 CRISPR-associated endonuclease first helical domain CRISPR-associated endonuclease Cpf1 first helical domain CRISPR-associated endonuclease Cpf1 first helical domain
e6nmdA5 A:290-514 CRISPR-associated endonuclease Cpf1 second helical domain CRISPR-associated endonuclease Cpf1 second helical domain CRISPR-associated endonuclease Cpf1 second helical domain
e6nmdA1 A:584-678 CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain
e6nmdA4 A:810-1003,A:1176-1227 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6nmdA2 A:1004-1175 CRISPR-associated endonuclease Cpf1 nuclease domain CRISPR-associated endonuclease Cpf1 nuclease domain CRISPR-associated endonuclease Cpf1 nuclease domain

Domains in the same PDB:

e6nmdA6 A:1-46,A:515-583,A:679-809 OB-fold Small protein B (SmpB) Small protein B (SmpB)
e6nmdA3 A:47-289 CRISPR-associated endonuclease first helical domain CRISPR-associated endonuclease Cpf1 first helical domain CRISPR-associated endonuclease Cpf1 first helical domain
e6nmdA5 A:290-514 CRISPR-associated endonuclease Cpf1 second helical domain CRISPR-associated endonuclease Cpf1 second helical domain CRISPR-associated endonuclease Cpf1 second helical domain
e6nmdA1 A:584-678 CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain
e6nmdA4 A:810-1003,A:1176-1227 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e6nmdA2 A:1004-1175 CRISPR-associated endonuclease Cpf1 nuclease domain CRISPR-associated endonuclease Cpf1 nuclease domain CRISPR-associated endonuclease Cpf1 nuclease domain