Domain ID e7d4iM43

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  • A: extended segments
  • X: Helical arch in Ski2-like helicases
  • H: Helical arch in Ski2-like helicases
  • T: Helical arch in Ski2-like helicases
  • F: MTR4_beta-barrel
UID: 002819801
Type: Automatic domain
Parent: e2xgjA6
Range: M4:609-674,M4:803-873
PDB: 7d4i
PDB Description: ATP-dependent RNA helicase DOB1
Species:

Structure of domain e7d4iM43

Domains in the same chain:

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e7d4iM46 M4:675-802 SH3 SH3 SH3
e7d4iM44 M4:911-1073 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e7d4iM45 M4:324-361,M4:392-577 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7d4iM43 M4:609-674,M4:803-873 Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases
e7d4iM41 M4:578-608,M4:874-910 HTH HTH winged
e7d4iM42 M4:4-17,M4:80-323 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e7d4i3B1 3B:79-326 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e7d4i3C1 3C:86-322 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e7d4i3D2 3D:299-340,3D:370-415 HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain
e7d4i3D1 3D:166-300 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e7d4i3D3 3D:3-165 Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain
e7d4i3F1 3F:113-570 beta-propeller-like beta-propeller 8-bladed
e7d4i3G1 3G:5-125 Bacillus chorismate mutase-like L30e-like L30e-like
e7d4i3H1 3H:5-125 Bacillus chorismate mutase-like L30e-like L30e-like
e7d4i5F1 5F:2-183 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e7d4i5K1 5K:40-189 HAD domain-like HAD domain-related PIN domain-like
e7d4iA41 A4:375-681,A4:731-776 beta-propeller-like beta-propeller 7-bladed
e7d4iA42 A4:29-374 beta-propeller-like beta-propeller 7-bladed
e7d4iA91 A9:389-516 Repetitive alpha hairpins C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13
e7d4iAF2 AF:388-512 Repetitive alpha hairpins C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13
e7d4iAF1 AF:2-334,AF:359-387 beta-propeller-like beta-propeller 8-bladed
e7d4iB13 B1:2-223,B1:245-343 beta-propeller-like beta-propeller 7-bladed
e7d4iB12 B1:735-856 Repetitive alpha hairpins C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13
e7d4iB11 B1:343-631,B1:675-734 beta-propeller-like beta-propeller 7-bladed
e7d4iB23 B2:745-917 Repetitive alpha hairpins C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13
e7d4iB22 B2:5-385 beta-propeller-like beta-propeller 7-bladed
e7d4iB21 B2:386-687 beta-propeller-like beta-propeller 7-bladed
e7d4iB31 B3:282-651 beta-propeller-like beta-propeller 8-bladed
e7d4iB33 B3:3-281 beta-propeller-like beta-propeller 6-bladed
e7d4iB32 B3:652-817 Repetitive alpha hairpins C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13
e7d4iC42 C4:8-67,C4:105-113 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e7d4iC41 C4:131-162,C4:197-291 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iM31 M3:4-146,M3:167-185 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e7d4iM32 M3:183-248 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e7d4iM43 M4:609-674,M4:803-873 Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases Helical arch in Ski2-like helicases
e7d4iM46 M4:675-802 SH3 SH3 SH3
e7d4iM42 M4:4-17,M4:80-323 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7d4iM44 M4:911-1073 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e7d4iM41 M4:578-608,M4:874-910 HTH HTH winged
e7d4iM45 M4:324-361,M4:392-577 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7d4iR01 R0:152-237 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e7d4iR02 R0:61-151 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iR03 R0:1-60 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e7d4iR12 R1:153-244 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e7d4iR11 R1:1-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e7d4iR22 R2:181-265 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e7d4iR21 R2:1-180 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e7d4iR31 R3:287-394 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e7d4iR32 R3:8-99,R3:121-249,R3:270-286 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e7d4ir41 r4:196-245,r4:281-356 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e7d4ir43 r4:2-17,r4:50-100 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e7d4ir42 r4:101-195 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iR44 R4:400-493 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iR43 R4:238-329,R4:364-399 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iR45 R4:911-1001 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iR41 R4:494-910 OB-fold RNB domain-like RNB domain-like
e7d4iR42 R4:9-237 HAD domain-like HAD domain-related PIN domain-like
e7d4iR52 R5:187-301 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e7d4iR51 R5:3-186 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e7d4iR61 R6:1-125 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e7d4iR62 R6:123-223 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e7d4iR71 R7:5-117 Exosome complex protein LRP1 Exosome complex protein LRP1 Exosome complex protein LRP1
e7d4iRD1 RD:1192-1224,RD:1457-1721 Repetitive alpha hairpins ARM repeat ARM repeat
e7d4iRE4 RE:515-698 Alpha-beta plaits PAP/Archaeal CCA-adding enzyme, C-terminal domain PAP/Archaeal CCA-adding enzyme, C-terminal domain
e7d4iRE5 RE:1092-1237 Alpha-beta plaits PAP/Archaeal CCA-adding enzyme, C-terminal domain PAP/Archaeal CCA-adding enzyme, C-terminal domain
e7d4iRE2 RE:699-905 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e7d4iRE6 RE:357-514 HhH/H2TH SAM/DNA-glycosylase PAP/OAS1 substrate-binding domain
e7d4iRE3 RE:906-982,RE:1012-1091 HhH/H2TH SAM/DNA-glycosylase PAP/OAS1 substrate-binding domain
e7d4iRE1 RE:100-356 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e7d4iRF1 RF:3-272 Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD
e7d4iRG1 RG:29-251 alpha/beta knot alpha/beta knot alpha/beta knot
e7d4iRH1 RH:16-251 alpha/beta knot alpha/beta knot alpha/beta knot
e7d4iRK2 RK:183-287 Thioredoxin-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain RNA 3'-terminal phosphate cyclase, RPTC, insert domain
e7d4iRK1 RK:7-182,RK:287-366 IF3-like EPT/RTPC-like EPT/RTPC-like
e7d4iRS1 RS:209-465 Repetitive alpha hairpins ARM repeat ARM repeat
e7d4iRT2 RT:36-45,RT:90-177 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e7d4iRT1 RT:178-271 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e7d4iRZ6 RZ:1156-1253 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iRZ1 RZ:1101-1155 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iRZ5 RZ:837-907 HTH HTH winged
e7d4iRZ3 RZ:908-947,RZ:977-1100 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e7d4iRZ2 RZ:587-836 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7d4iRZ4 RZ:373-586 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7d4iSc1 Sc:3-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7d4iSC1 SC:114-223 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e7d4iSC2 SC:3-113,SC:224-244 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e7d4iSd1 Sd:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iSF3 SF:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iSF2 SF:176-255 SH3 SH3 SH3
e7d4iSF1 SF:9-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e7d4iSG1 SG:13-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e7d4iSH1 SH:1-62,SH:99-218 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e7d4iSI1 SI:6-96,SI:116-119 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e7d4iSI2 SI:116-189 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e7d4iSJ1 SJ:22-121,SJ:153-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e7d4iSK1 SK:9-182 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e7d4iSM1 SM:6-142 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iSO2 SO:83-142 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e7d4iSO1 SO:9-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e7d4iSP1 SP:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e7d4iSR1 SR:3-127 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e7d4iST1 ST:2-80,ST:101-124 HhH/H2TH H2TH H2TH
e7d4iSU1 SU:4-141 HTH HTH winged
e7d4iSX2 SX:4-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e7d4iSX1 SX:67-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e7d4iSY1 SY:41-144 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7d4iSZ1 SZ:4-126 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e