Search results from domains: Manual domain Provisional domain Automatic domain
Domain ID | PDB Range | X Group Name | H Group Name | T Group Name | F Group Name | Protein Name | |
---|---|---|---|---|---|---|---|
e3iydA3 | A:2-52,A:179-236 | DCoH-like | RBP11-like subunits of RNA polymerase | RBP11-like subunits of RNA polymerase | RNA_pol_L | DNA-directed RNA polymerase subunit alpha | Tree view |
e3iydA1 | A:53-178 | Ribosomal protein TL5/L25 C-terminal domain-like | Insert subdomain of RNA polymerase alpha subunit | Insert subdomain of RNA polymerase alpha subunit | RNA_pol_A_bac | DNA-directed RNA polymerase subunit alpha | Tree view |
e3iydA2 | A:237-328 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like | RNA_pol_A_CTD | DNA-directed RNA polymerase subunit alpha | Tree view |
e3iydB4 | B:1-52,B:174-235 | DCoH-like | RBP11-like subunits of RNA polymerase | RBP11-like subunits of RNA polymerase | RNA_pol_L | DNA-directed RNA polymerase subunit alpha | Tree view |
e3iydB3 | B:53-173 | Ribosomal protein TL5/L25 C-terminal domain-like | Insert subdomain of RNA polymerase alpha subunit | Insert subdomain of RNA polymerase alpha subunit | RNA_pol_A_bac | DNA-directed RNA polymerase subunit alpha | Tree view |
e3iydC8 | C:10-152,C:450-577 | N-terminal domain in beta subunit of DNA dependent RNA-polymerase | N-terminal domain in beta subunit of DNA dependent RNA-polymerase | N-terminal domain in beta subunit of DNA dependent RNA-polymerase | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | DNA-directed RNA polymerase subunit beta | Tree view |
e3iydC14 | C:153-226,C:343-451 | insertion domain in beta subunit of DNA dependent RNA-polymerase | insertion domain in beta subunit of DNA dependent RNA-polymerase | insertion domain in beta subunit of DNA dependent RNA-polymerase | RNA_pol_Rpb2_2 | DNA-directed RNA polymerase subunit beta | Tree view |
e3iydC9 | C:578-714 | barrel domain in beta subunit of DNA dependent RNA-polymerase | barrel domain in beta subunit of DNA dependent RNA-polymerase | barrel domain in beta subunit of DNA dependent RNA-polymerase | RNA_pol_Rpb2_45 | DNA-directed RNA polymerase subunit beta | Tree view |
e3iydC7 | C:713-790 | alpha/beta-Hammerhead/Barrel-sandwich hybrid | alpha/beta-Hammerhead/Barrel-sandwich hybrid | Single hybrid motif | RNA_pol_Rpb2_6 | DNA-directed RNA polymerase subunit beta | Tree view |
e3iydC6 | C:791-828,C:1060-1125,C:1180-1237 | cradle loop barrel | RIFT-related | double psi | RNA_pol_Rpb2_6 | DNA-directed RNA polymerase subunit beta | Tree view |
e3iydC5 | C:828-942,C:1042-1062 | alpha/beta-Hammerhead/Barrel-sandwich hybrid | alpha/beta-Hammerhead/Barrel-sandwich hybrid | Single hybrid motif | RNA_pol_Rpb2_6 | DNA-directed RNA polymerase subunit beta | Tree view |
e3iydC11 | C:1238-1342 | C-terminal domain in beta subunit of DNA dependent RNA-polymerase | C-terminal domain in beta subunit of DNA dependent RNA-polymerase | C-terminal domain in beta subunit of DNA dependent RNA-polymerase | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | DNA-directed RNA polymerase subunit beta | Tree view |
e3iydE1 | E:2-91 | RPB6/omega subunit-like | RPB6/omega subunit-like | RNA polymerase omega subunit | RNA_pol_Rpb6 | DNA-directed RNA polymerase subunit omega | Tree view |
e3iydF3 | F:114-173,F:212-446 | Sigma2 domain-like | Sigma2 domain of RNA polymerase sigma factors | Sigma2 domain of RNA polymerase sigma factors | Sigma70_r2,Sigma70_ner | RNA polymerase sigma factor rpoD | Tree view |
e3iydF2 | F:447-515 | HTH | HTH | tri-helical | Sigma70_r3 | RNA polymerase sigma factor rpoD | Tree view |
e3iydF1 | F:516-611 | HTH | HTH | tri-helical | Sigma70_r4 | RNA polymerase sigma factor rpoD | Tree view |
e3iydG1 | G:9-137 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix | cNMP_binding | Catabolite gene activator | Tree view |
e3iydG2 | G:138-209 | HTH | HTH | winged | HTH_Crp_2 | Catabolite gene activator | Tree view |
e3iydH1 | H:9-137 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix | cNMP_binding | Catabolite gene activator | Tree view |
e3iydH2 | H:138-209 | HTH | HTH | winged | HTH_Crp_2 | Catabolite gene activator | Tree view |
3iyd chain J (DNA (98-MER)) is considered as a nucleic acid .
3iyd chain I (DNA (98-MER)) is considered as a nucleic acid .
3iyd chain D [D:15-1382] (DNA-directed RNA polymerase subunit beta) is considered as a synthetic protein .