Search results from domains: Manual domain Provisional domain Automatic domain

Domain ID PDB Range X Group Name H Group Name T Group Name F Group Name Protein Name
e3iydA3 A:2-52,A:179-236 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase RNA_pol_L DNA-directed RNA polymerase subunit alpha Tree view
e3iydA1 A:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RNA_pol_A_bac DNA-directed RNA polymerase subunit alpha Tree view
e3iydA2 A:237-328 HhH/H2TH SAM/DNA-glycosylase SAM domain-like RNA_pol_A_CTD DNA-directed RNA polymerase subunit alpha Tree view
e3iydB4 B:1-52,B:174-235 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase RNA_pol_L DNA-directed RNA polymerase subunit alpha Tree view
e3iydB3 B:53-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RNA_pol_A_bac DNA-directed RNA polymerase subunit alpha Tree view
e3iydC8 C:10-152,C:450-577 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 DNA-directed RNA polymerase subunit beta Tree view
e3iydC14 C:153-226,C:343-451 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase RNA_pol_Rpb2_2 DNA-directed RNA polymerase subunit beta Tree view
e3iydC9 C:578-714 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase RNA_pol_Rpb2_45 DNA-directed RNA polymerase subunit beta Tree view
e3iydC7 C:713-790 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif RNA_pol_Rpb2_6 DNA-directed RNA polymerase subunit beta Tree view
e3iydC6 C:791-828,C:1060-1125,C:1180-1237 cradle loop barrel RIFT-related double psi RNA_pol_Rpb2_6 DNA-directed RNA polymerase subunit beta Tree view
e3iydC5 C:828-942,C:1042-1062 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif RNA_pol_Rpb2_6 DNA-directed RNA polymerase subunit beta Tree view
e3iydC11 C:1238-1342 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 DNA-directed RNA polymerase subunit beta Tree view
e3iydE1 E:2-91 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit RNA_pol_Rpb6 DNA-directed RNA polymerase subunit omega Tree view
e3iydF3 F:114-173,F:212-446 Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Sigma70_r2,Sigma70_ner RNA polymerase sigma factor rpoD Tree view
e3iydF2 F:447-515 HTH HTH tri-helical Sigma70_r3 RNA polymerase sigma factor rpoD Tree view
e3iydF1 F:516-611 HTH HTH tri-helical Sigma70_r4 RNA polymerase sigma factor rpoD Tree view
e3iydG1 G:9-137 jelly-roll Double-stranded beta-helix Double-stranded beta-helix cNMP_binding Catabolite gene activator Tree view
e3iydG2 G:138-209 HTH HTH winged HTH_Crp_2 Catabolite gene activator Tree view
e3iydH1 H:9-137 jelly-roll Double-stranded beta-helix Double-stranded beta-helix cNMP_binding Catabolite gene activator Tree view
e3iydH2 H:138-209 HTH HTH winged HTH_Crp_2 Catabolite gene activator Tree view

3iyd chain J (DNA (98-MER)) is considered as a nucleic acid .

3iyd chain I (DNA (98-MER)) is considered as a nucleic acid .

3iyd chain D [D:15-1382] (DNA-directed RNA polymerase subunit beta) is considered as a synthetic protein .