Domain ID e3iydF2

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: tri-helical
  • F: Sigma70_r3
UID: 001392973
Type: Automatic domain
Parent: e1ku2A1
Range: F:447-515
PDB: 3iyd
PDB Description: RNA polymerase sigma factor rpoD
UniProt: P00579
Species:

Structure of domain e3iydF2

Domains in the same chain:

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e3iydF3 F:114-173,F:212-446 Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors
e3iydF2 F:447-515 HTH HTH tri-helical
e3iydF1 F:516-611 HTH HTH tri-helical

Domains in the same PDB:

e3iydA3 A:2-52,A:179-236 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3iydA1 A:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e3iydA2 A:237-328 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3iydB4 B:1-52,B:174-235 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3iydB3 B:53-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e3iydC8 C:10-152,C:450-577 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3iydC14 C:153-226,C:343-451 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e3iydC9 C:578-714 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e3iydC7 C:713-790 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3iydC6 C:791-828,C:1060-1125,C:1180-1237 cradle loop barrel RIFT-related double psi
e3iydC5 C:828-942,C:1042-1062 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3iydC11 C:1238-1342 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3iydE1 E:2-91 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit
e3iydF3 F:114-173,F:212-446 Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors
e3iydF2 F:447-515 HTH HTH tri-helical
e3iydF1 F:516-611 HTH HTH tri-helical
e3iydG1 G:9-137 jelly-roll Double-stranded beta-helix Double-stranded beta-helix
e3iydG2 G:138-209 HTH HTH winged
e3iydH1 H:9-137 jelly-roll Double-stranded beta-helix Double-stranded beta-helix
e3iydH2 H:138-209 HTH HTH winged

Structural contacts of domain e3iydF2 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3iydC8 F:X,Y,Z->C:x,y,z N-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3iydC5 F:X,Y,Z->C:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol