SPD
SPERMIDINEnon-polymer
- Formula
- C7 H19 N3
- Weight
- 145.25 Da
- Type
- NON-POLYMER
- Release
- REL
327
PDB entries
919
ECOD domains in contact
1,048
Contacts (≤ 4 Å)
Top-binding ECOD families
| F-group | Family | Domains |
|---|---|---|
| 2490.3.1.1 | Ribosomal_L27A | 121 |
| 304.109.1.3 | Ribosomal_L15e | 71 |
| 7523.1.1.28 | SBP_bac_8 | 60 |
| 7559.1.1.1 | Ribosomal_L4 | 50 |
| 375.1.1.16 | Ribosomal_L37e | 47 |
| 1.1.7.2 | Ribosomal_L3 | 35 |
| 212.1.1.6 | Ribosomal_S9 | 29 |
| 5054.1.1.1 | Lig_chan | 28 |
| 218.2.1.1 | Ribosomal_L22 | 27 |
| 2490.3.1.2 | Ribosomal_L18 | 23 |
| 4.1.1.38 | Ribosomal_L2_C | 22 |
| 3699.1.1.1 | Spermine_synt_N | 22 |
| 2003.1.5.13 | Spermine_synth | 22 |
| 101.40.1.1 | Ribosomal_S13_N | 21 |
| 218.3.1.1 | Ribosomal_L17 | 19 |
| 2003.1.4.3 | DS | 18 |
| 375.1.1.6 | Ribosomal_L40e | 16 |
| 377.1.1.2 | Ribosomal_S14 | 16 |
| 2490.2.1.1 | Ribosomal_L13 | 13 |
| 4.1.1.14 | Ribosomal_L21e | 12 |
PDB entries containing SPD
| PDB | Chains | Instances |
|---|---|---|
| 8p2h | A | 3 |
| 8p2k | A2, B5 | 30 |
| 8p4v | 1, AR | 2 |
| 8p6p | 5 | 2 |
| 8p7x | 3, 5 | 18 |
| 8p7y | 3, 5 | 18 |
| 8p85 | 1, AR | 2 |
| 8p8b | 3 | 16 |
| 8p8m | A | 1 |
| 8p8n | A | 1 |
| 8p8u | A | 1 |
| 8p9a | 1, AR | 2 |
| 8pfr | A | 1 |
| 8pkl | 7 | 1 |
| 8pnn | 1, AR | 4 |
| 8q5i | 1 | 1 |
| 8qk7 | 1 | 10 |
| 8qoi | L5 | 2 |
| 8qyx | A2 | 7 |
| 8qzx | A, C, D | 3 |