SPD
SPERMIDINEnon-polymer
- Formula
- C7 H19 N3
- Weight
- 145.25 Da
- Type
- NON-POLYMER
- Release
- REL
327
PDB entries
919
ECOD domains in contact
1,048
Contacts (≤ 4 Å)
Top-binding ECOD families
| F-group | Family | Domains |
|---|---|---|
| 2490.3.1.1 | Ribosomal_L27A | 121 |
| 304.109.1.3 | Ribosomal_L15e | 71 |
| 7523.1.1.28 | SBP_bac_8 | 60 |
| 7559.1.1.1 | Ribosomal_L4 | 50 |
| 375.1.1.16 | Ribosomal_L37e | 47 |
| 1.1.7.2 | Ribosomal_L3 | 35 |
| 212.1.1.6 | Ribosomal_S9 | 29 |
| 5054.1.1.1 | Lig_chan | 28 |
| 218.2.1.1 | Ribosomal_L22 | 27 |
| 2490.3.1.2 | Ribosomal_L18 | 23 |
| 4.1.1.38 | Ribosomal_L2_C | 22 |
| 3699.1.1.1 | Spermine_synt_N | 22 |
| 2003.1.5.13 | Spermine_synth | 22 |
| 101.40.1.1 | Ribosomal_S13_N | 21 |
| 218.3.1.1 | Ribosomal_L17 | 19 |
| 2003.1.4.3 | DS | 18 |
| 375.1.1.6 | Ribosomal_L40e | 16 |
| 377.1.1.2 | Ribosomal_S14 | 16 |
| 2490.2.1.1 | Ribosomal_L13 | 13 |
| 4.1.1.14 | Ribosomal_L21e | 12 |
PDB entries containing SPD
| PDB | Chains | Instances |
|---|---|---|
| 8vvt | WA | 1 |
| 8vvu | WA | 1 |
| 8wp7 | A | 1 |
| 8xtp | B | 1 |
| 8y5g | B | 1 |
| 8y5h | E | 1 |
| 8z0c | A, B | 2 |
| 8ztu | a | 7 |
| 8ztv | a | 7 |
| 9bh5 | A5 | 1 |
| 9bkd | A | 1 |
| 9bln | A | 1 |
| 9cai | A5 | 1 |
| 9d7v | A | 1 |
| 9f1b | A2, B5 | 30 |
| 9f1c | A2, B5 | 30 |
| 9f1d | A2, B5 | 30 |
| 9f9s | M1 | 3 |
| 9fqz | L5 | 8 |
| 9fxo | L1, L2, LM, S1 | 21 |