SPD
SPERMIDINEnon-polymer
- Formula
- C7 H19 N3
- Weight
- 145.25 Da
- Type
- NON-POLYMER
- Release
- REL
327
PDB entries
919
ECOD domains in contact
1,048
Contacts (≤ 4 Å)
Top-binding ECOD families
| F-group | Family | Domains |
|---|---|---|
| 2490.3.1.1 | Ribosomal_L27A | 121 |
| 304.109.1.3 | Ribosomal_L15e | 71 |
| 7523.1.1.28 | SBP_bac_8 | 60 |
| 7559.1.1.1 | Ribosomal_L4 | 50 |
| 375.1.1.16 | Ribosomal_L37e | 47 |
| 1.1.7.2 | Ribosomal_L3 | 35 |
| 212.1.1.6 | Ribosomal_S9 | 29 |
| 5054.1.1.1 | Lig_chan | 28 |
| 218.2.1.1 | Ribosomal_L22 | 27 |
| 2490.3.1.2 | Ribosomal_L18 | 23 |
| 4.1.1.38 | Ribosomal_L2_C | 22 |
| 3699.1.1.1 | Spermine_synt_N | 22 |
| 2003.1.5.13 | Spermine_synth | 22 |
| 101.40.1.1 | Ribosomal_S13_N | 21 |
| 218.3.1.1 | Ribosomal_L17 | 19 |
| 2003.1.4.3 | DS | 18 |
| 375.1.1.6 | Ribosomal_L40e | 16 |
| 377.1.1.2 | Ribosomal_S14 | 16 |
| 2490.2.1.1 | Ribosomal_L13 | 13 |
| 4.1.1.14 | Ribosomal_L21e | 12 |
PDB entries containing SPD
| PDB | Chains | Instances |
|---|---|---|
| 9pr4 | A | 2 |
| 9pra | A | 2 |
| 9prd | A, AA, O | 7 |
| 9prq | A, AA | 7 |
| 9prx | A, AA, AG, O | 7 |
| 9ps0 | A, AA, O | 7 |
| 9ps7 | A, AA | 7 |
| 9psi | A, AA | 7 |
| 9psm | A, AA | 8 |
| 9qqa | A2, B5 | 30 |
| 9qqb | A2, B5, BS | 30 |
| 9rhu | A3 | 2 |
| 9ruc | L5 | 3 |
| 9spf | L5, L8, LN, S2 | 19 |
| 9spi | L5, LN, S2 | 18 |
| 9uwh | AA | 1 |
| 9vyl | A, B, C, D | 8 |
| 9ypg | 5 | 1 |
| 9ypo | 5 | 1 |
| 9yps | 5 | 1 |