SPD
SPERMIDINEnon-polymer
- Formula
- C7 H19 N3
- Weight
- 145.25 Da
- Type
- NON-POLYMER
- Release
- REL
327
PDB entries
919
ECOD domains in contact
1,048
Contacts (≤ 4 Å)
Top-binding ECOD families
| F-group | Family | Domains |
|---|---|---|
| 2490.3.1.1 | Ribosomal_L27A | 121 |
| 304.109.1.3 | Ribosomal_L15e | 71 |
| 7523.1.1.28 | SBP_bac_8 | 60 |
| 7559.1.1.1 | Ribosomal_L4 | 50 |
| 375.1.1.16 | Ribosomal_L37e | 47 |
| 1.1.7.2 | Ribosomal_L3 | 35 |
| 212.1.1.6 | Ribosomal_S9 | 29 |
| 5054.1.1.1 | Lig_chan | 28 |
| 218.2.1.1 | Ribosomal_L22 | 27 |
| 2490.3.1.2 | Ribosomal_L18 | 23 |
| 4.1.1.38 | Ribosomal_L2_C | 22 |
| 3699.1.1.1 | Spermine_synt_N | 22 |
| 2003.1.5.13 | Spermine_synth | 22 |
| 101.40.1.1 | Ribosomal_S13_N | 21 |
| 218.3.1.1 | Ribosomal_L17 | 19 |
| 2003.1.4.3 | DS | 18 |
| 375.1.1.6 | Ribosomal_L40e | 16 |
| 377.1.1.2 | Ribosomal_S14 | 16 |
| 2490.2.1.1 | Ribosomal_L13 | 13 |
| 4.1.1.14 | Ribosomal_L21e | 12 |
PDB entries containing SPD
| PDB | Chains | Instances |
|---|---|---|
| 8b7y | C | 2 |
| 8bn3 | 1 | 3 |
| 8btk | A2, B5, BN | 30 |
| 8ccs | AA, c | 4 |
| 8cdl | AA, c | 4 |
| 8cdr | AA, c | 4 |
| 8ceh | AA | 3 |
| 8cf5 | AA, c, QQ | 11 |
| 8cg8 | AA, c, QQ | 8 |
| 8cgn | AA, c | 4 |
| 8civ | AA | 3 |
| 8cku | AA, c | 3 |
| 8e6n | A | 2 |
| 8eiu | a, A | 16 |
| 8emm | a, A | 17 |
| 8fru | 1 | 1 |
| 8g5y | L5, S2 | 13 |
| 8g5z | L5, S2 | 10 |
| 8g60 | L5, S2 | 8 |
| 8g61 | L5 | 5 |