Citrus Sinensis ID: 000177
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1922 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M086 | 1883 | DDB1- and CUL4-associated | yes | no | 0.866 | 0.884 | 0.608 | 0.0 | |
| Q9Y4B6 | 1507 | Protein VPRBP OS=Homo sap | yes | no | 0.194 | 0.248 | 0.360 | 6e-62 | |
| Q80TR8 | 1506 | Protein VPRBP OS=Mus musc | yes | no | 0.194 | 0.248 | 0.360 | 9e-62 | |
| Q9W2F2 | 1544 | DDB1- and CUL4-associated | yes | no | 0.192 | 0.239 | 0.292 | 2e-40 | |
| Q21106 | 1701 | DDB1- and CUL4-associated | yes | no | 0.195 | 0.220 | 0.284 | 9e-40 | |
| P0C6X3 | 7152 | Replicase polyprotein 1ab | no | no | 0.074 | 0.020 | 0.295 | 0.0001 | |
| P0C6X2 | 7182 | Replicase polyprotein 1ab | no | no | 0.071 | 0.019 | 0.301 | 0.0002 |
| >sp|Q9M086|DCAF1_ARATH DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana GN=DCAF1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1971 bits (5105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1124/1846 (60%), Positives = 1350/1846 (73%), Gaps = 181/1846 (9%)
Query: 34 KKVEEELMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSSNNARASHN 93
+ VE+EL+AKAQKLME ITS +NPNP++LHALS L E QESL+LEE+G SN AR SHN
Sbjct: 44 QSVEDELIAKAQKLMEDITSVANNPNPNILHALSQLLESQESLFLEENGHFSN-ARGSHN 102
Query: 94 IGRLGNLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDN 153
G+L L+REND+FFELISS FLSE+ YST+V+AA+ARL+++CSLTW+YPH F++ V +N
Sbjct: 103 SGKLCILIRENDEFFELISSTFLSENSYSTAVKAASARLLMNCSLTWMYPHVFDDAVTEN 162
Query: 154 VKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVEDVLTSG 213
KNWVM+E + ED ++KEASD EMLKTY+TGLLA+ LA GQ+VEDVLTSG
Sbjct: 163 FKNWVMEEAVKFPGEDS------AKKEASDFEMLKTYSTGLLALSLASRGQIVEDVLTSG 216
Query: 214 LSAKLMRYLRIRVLGETSQKDANHLAESKNSASATSLRGREEGRVRLRQILEHPDERTID 273
LSAKLM YLR+RVL E S H E+K+ SL+ +EEGR R+R+I++
Sbjct: 217 LSAKLMHYLRVRVLKEPSTSRI-HTTETKH----VSLKTKEEGRSRVRKIVD-------- 263
Query: 274 ERSLDDQDIERVTHGDECGADDGEPHDGLAAGIDMSEAY--TDAREGKTKLGDNDETGRD 331
+++ + G E G D +P DG ID + + + + K K GD D + RD
Sbjct: 264 --TVEGDHVLETDSGREMGQTDVQP-DG-EFEIDGRDVFNVSGVVDCKIKPGD-DNSVRD 318
Query: 332 DSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRDRSVSKSSDTKKA 391
D SR R+NR +SRG+GR++EGA +T+ L SP RLG++ +RDR +SK SD + A
Sbjct: 319 DPSRHRLNRS--KSRGRGRVHEGAPDTEVLLASP----RLGRLL-VRDRDLSKISDGRNA 371
Query: 392 PDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAEAEARAANAPLEA 451
D G + S + +ERED D+CFQ C +G+K+I+D+VK+AV AAE EARAA+AP +A
Sbjct: 372 EDVTVCLGKMKSGIMEIEREDNDECFQGCIIGTKNITDLVKRAVGAAETEARAAHAPDDA 431
Query: 452 IKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVEVSRNSISNNVDS 511
KAAGDAAAE+VK+AA EEFK++ E+AA+ AA+RAA TVIDAA EVSRN
Sbjct: 432 AKAAGDAAAELVKTAALEEFKSSGSEEAAVSAATRAAITVIDAA---EVSRNP------- 481
Query: 512 VSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLHEKGVDVCL 571
VT +T DV E +PD+ESLAQL+EKYCIQCLE LGEYVEVLGPVLHEKGVDVC+
Sbjct: 482 --TCVTSDQTT-DVSEVSLPDIESLAQLQEKYCIQCLEILGEYVEVLGPVLHEKGVDVCI 538
Query: 572 ALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFG 631
LL+R+S+ ++ S V+ LLPDVMKLICALAAHRKFAA+FV+R G+ KLLAVPR ++TF+G
Sbjct: 539 VLLERTSQLDDRSTVSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYG 598
Query: 632 LSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVFRA 691
LSSCL+TIGSLQGIMERVCALP V+HQ+V+LAI+LL+C+QDQARKN+ALFFAAAFVFRA
Sbjct: 599 LSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRA 658
Query: 692 IIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAY 751
I+DAFDAQD LQKLL +L DAASVR+G N DRS PEV+TSSEKQ+A+
Sbjct: 659 ILDAFDAQDSLQKLLAILKDAASVRTGAN-------------TDRSAPEVMTSSEKQMAF 705
Query: 752 HTCVALRQYFRAHLLLLVDSIRPNKSNRSA--GRNIPNVRAAYKPLDISNEAIDAVFLQL 809
HTC ALRQYFRAHLLLLVDSIRP++ +R PN+RAAYKPLDISNEA+DA+FLQL
Sbjct: 706 HTCFALRQYFRAHLLLLVDSIRPSRISRGGVPSSMKPNIRAAYKPLDISNEAVDAIFLQL 765
Query: 810 QKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVLHIVTLV 869
QKDR+LGP V+ +WPAV+ FL+ +GH+T+LELCQ PPV+RYLHDLLQYA GVLHIVT +
Sbjct: 766 QKDRRLGPTFVKAQWPAVNNFLASSGHVTMLELCQTPPVDRYLHDLLQYAFGVLHIVTSI 825
Query: 870 PNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPSISNKPP 929
P+ RK I +ATLSNN GIAVILDAAN +S VDPEIIQPALNVLINLVCPPPS+SNKPP
Sbjct: 826 PDGRKAIAHATLSNNRAGIAVILDAANISNSIVDPEIIQPALNVLINLVCPPPSLSNKPP 885
Query: 930 LLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDRGSSAN 989
L AQ Q V GQ + PS + +
Sbjct: 886 L-AQNHQPVPGQATTRPSTD------------------------------------VAVG 908
Query: 990 TQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVL 1049
TQ + QTPV +SGLVGDRRI LGAG G AGLAA+LEQ YRQAREAVR N+GIK+L
Sbjct: 909 TQSTGNAPQTPVAPASSGLVGDRRIFLGAGTGSAGLAAKLEQVYRQAREAVRGNDGIKIL 968
Query: 1050 LHLLQPRIY-SPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGGQT 1108
L LLQPRIY +PPA DCLRALACRVLLGLARDDTIA ILTKL+VGK LSELIRDSGGQ+
Sbjct: 969 LKLLQPRIYVNPPATPDCLRALACRVLLGLARDDTIAQILTKLEVGKSLSELIRDSGGQS 1028
Query: 1109 PATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAAIAAATPISYHS 1168
T+QGRWQAEL+QVA+ELI IVTNSG A+TL A+DAATPTLRRIERAAIAAATPI+Y S
Sbjct: 1029 SGTDQGRWQAELAQVALELIGIVTNSGHATTLTASDAATPTLRRIERAAIAAATPITYDS 1088
Query: 1169 RELLLLIHEHLQASGLVTTAAQLLKEAQLTPL---------------------------- 1200
+ELLLLIHEHLQASGL TA+ LLKEAQLTPL
Sbjct: 1089 KELLLLIHEHLQASGLGDTASALLKEAQLTPLPSSASPSSIAYSTTQEMSTPLAQEQWPS 1148
Query: 1201 -----------PSLAA----PSS------------LAHQISTQESPSIQIQWPSGRSP-G 1232
P + A P+S LA +P Q QWPSGR+ G
Sbjct: 1149 GRANSGFFTSKPKVCAHDEDPNSRSNAALSAKKKHLASSTLEMPTPVAQQQWPSGRANCG 1208
Query: 1233 FLTGKSKLAARDEDISLKCDSSMSSKKKQLVFSPSFNLQSRHQSQSHDSQTPSSRKV--F 1290
F K+ ARDED S + +++ S+KKKQL FSPSF+ QSR QS SHD+ S++++
Sbjct: 1209 FCPSIPKINARDEDPSSRGNAAPSAKKKQLTFSPSFSSQSRKQSFSHDALPQSTQRINCC 1268
Query: 1291 SNSKQSAVPSVLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELKDTGLSLSGKRLHTG 1350
SNS A+ E E V K++ D D+Q KTPI+ P KRKLSEL+D+ S+ GKR+ G
Sbjct: 1269 SNS-DPALADTSETAAELVLKNDLDADAQFKTPISFPRKRKLSELRDS--SVPGKRIDLG 1325
Query: 1351 DLGLRSPSCPTPNSVRKSSLLNDPQGFSTPGSLAEYLDDNQCGNYHAGQATPSFQLGALN 1410
+ R++S D G TP S LD NQ G+ GQ TP+ QL +
Sbjct: 1326 E--------------RRNSTFADGSGLQTPAS---ALDANQSGSSRLGQMTPASQLRLPS 1368
Query: 1411 DPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTA 1470
DPQPSN ER++LDSLVVQYLKHQHRQC APITTLPP+SLLHPHVCPEPKR L+AP N+T
Sbjct: 1369 DPQPSNPERLSLDSLVVQYLKHQHRQCLAPITTLPPVSLLHPHVCPEPKRLLEAPLNMTG 1428
Query: 1471 RLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHT 1530
RLGTRE +S YSGVH NRRDRQFV+SRF+ WR+ RD+ AL TCI LG ++HIAVGSH
Sbjct: 1429 RLGTRELQSFYSGVHGNRRDRQFVFSRFKSWRSFRDET-ALFTCIALLGGTNHIAVGSHA 1487
Query: 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH 1590
E+KIF+++S S LES + HQAPVTLVQ ++S +TQLLLSSSS DV LW+ASSI GGP H
Sbjct: 1488 GEIKIFEASSGSMLESVSGHQAPVTLVQPYVSRDTQLLLSSSSSDVQLWDASSITGGPRH 1547
Query: 1591 SFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650
SF+GCKAA+FSNSG FAAL E S + +LLYD+QT KL+DT + R + YS +
Sbjct: 1548 SFDGCKAAKFSNSGLQFAALSCEASRKDVLLYDVQTCSPCQKLTDTVT--SSRSNPYSLV 1605
Query: 1651 HFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFRLL 1710
HFSP DT++LWNG+LWDRR V RFDQFTD+GGGGFHP+ NEVIINSE+WD+R F+LL
Sbjct: 1606 HFSPCDTLILWNGVLWDRRIPEKVRRFDQFTDYGGGGFHPSRNEVIINSEIWDMRTFKLL 1665
Query: 1711 RSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA 1770
RSVPSLDQT ITFN+RGDVIYA+LRRN+EDVMSAVHTRRVKHPLFAAFRT+DAINYSDIA
Sbjct: 1666 RSVPSLDQTAITFNSRGDVIYAMLRRNIEDVMSAVHTRRVKHPLFAAFRTLDAINYSDIA 1725
Query: 1771 TIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPT 1816
TIPVDRC+LDFATE TDSF+GLITM+DQEDMFSSAR+YEIGRRRPT
Sbjct: 1726 TIPVDRCLLDFATEPTDSFLGLITMEDQEDMFSSARMYEIGRRRPT 1771
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Component of the CUL4-RBX1-DDB1-DCAF1 E3 ubiquitin-protein ligase complex, DCAF1 may function as the substrate recognition module within this complex. Appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9Y4B6|VPRBP_HUMAN Protein VPRBP OS=Homo sapiens GN=VPRBP PE=1 SV=3 | Back alignment and function description |
|---|
Score = 240 bits (613), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 216/411 (52%), Gaps = 37/411 (9%)
Query: 1421 TLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKST 1480
TLDS++ +YL+ QH +C P+ T PP SL PH CPEPK+ AP N T+RL R
Sbjct: 1003 TLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPK 1062
Query: 1481 YSGVHRNRRDRQFVYSRFRPWRTCR----DDAGALLTCITFLGDSSHIAVGSHTKELKIF 1536
Y GV DR ++SRFRP R D++G TC F + +G+ T +LK++
Sbjct: 1063 YGGVDGGCFDRHLIFSRFRPISVFREANEDESG--FTCCAFSARERFLMLGTCTGQLKLY 1120
Query: 1537 DSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGC 1595
+ S S H + +T ++ G L ++ SQ + LW S+ HSF
Sbjct: 1121 NVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMK-HSFTED 1179
Query: 1596 KAARFSNSGNLFAALPTETSDRGI-------LLYDIQT-YQLEAKLSDTSVNLTGRGHAY 1647
FS + DR I +YDIQT +L + N R A
Sbjct: 1180 HYVEFSK----------HSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCAT 1229
Query: 1648 SQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKF 1707
F+P+D ++L +G+LWD R++ +H+FD+F + G FHP G EVIIN+E+WDLR F
Sbjct: 1230 ----FNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTF 1285
Query: 1708 RLLRSVPSLDQTTITFNARGDVIY-AILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINY 1766
LL +VP+LDQ + FN G V+Y A+L+ + ED + R+K P ++FRT +A +Y
Sbjct: 1286 HLLHTVPALDQCRVVFNHTGTVMYGAMLQADDED---DLMEERMKSPFGSSFRTFNATDY 1342
Query: 1767 SDIATIPVDRCVLDFATERTDSFVGLITMD---DQEDMFSSARIYEIGRRR 1814
IATI V R + D T+ D ++ +I D +M + R+YE+GR+R
Sbjct: 1343 KPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQR 1393
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Component of the CUL4A-RBX1-DDB1-VprBP/DCAF1 E3 ubiquitin-protein ligase complex, VprBP/DCAF1 may function as the substrate recognition module within this complex. For example, VprBP/DCAF1 targets NF2 to the E3 ubiquitin-ligase complex for ubiquitination and subsequent proteasome-dependent degradation. In case of infection by HIV-1 virus, it is recruited by HIV-1 Vpr in order to hijack the CUL4A-RBX1-DDB1 function leading to arrest the cell cycle in G2 phase, and also to protect the viral protein from proteasomal degradation by another E3 ubiquitin ligase. In case of infection by HIV-2 virus, it is recruited by HIV-2 Vpx in order to hijack the CUL4A-RBX1-DDB1 function leading to enhanced efficiency of macrophage infection and promotion of the replication of cognate primate lentiviruses in cells of monocyte/macrophage lineage. Associated with chromatin in a DDB1-independent and cell cycle-dependent manner, VprBP/DCAF1 is recruited to chromatin as DNA is being replicated and is released from chromatin before mitosis. Homo sapiens (taxid: 9606) |
| >sp|Q80TR8|VPRBP_MOUSE Protein VPRBP OS=Mus musculus GN=Vprbp PE=2 SV=4 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 216/411 (52%), Gaps = 37/411 (9%)
Query: 1421 TLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKST 1480
TLDS++ +YL+ QH +C P+ T PP SL PH CPEPK+ AP N T+RL R
Sbjct: 1002 TLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPK 1061
Query: 1481 YSGVHRNRRDRQFVYSRFRPWRTCR----DDAGALLTCITFLGDSSHIAVGSHTKELKIF 1536
Y GV DR ++SRFRP R D++G TC F + +G+ T +LK++
Sbjct: 1062 YGGVDGGCFDRHLIFSRFRPISVFREANEDESG--FTCCAFSARERFLMLGTCTGQLKLY 1119
Query: 1537 DSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGC 1595
+ S S H + +T ++ G L ++ SQ + LW S+ HSF
Sbjct: 1120 NVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMK-HSFTED 1178
Query: 1596 KAARFSNSGNLFAALPTETSDRGI-------LLYDIQT-YQLEAKLSDTSVNLTGRGHAY 1647
FS + DR I +YDIQT +L + N R A
Sbjct: 1179 HYVEFSK----------HSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCAT 1228
Query: 1648 SQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKF 1707
F+P+D ++L +G+LWD R++ +H+FD+F + G FHP G EVIIN+E+WDLR F
Sbjct: 1229 ----FNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTF 1284
Query: 1708 RLLRSVPSLDQTTITFNARGDVIY-AILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINY 1766
LL +VP+LDQ + FN G V+Y A+L+ + ED + R+K P ++FRT +A +Y
Sbjct: 1285 HLLHTVPALDQCRVVFNHTGTVMYGAMLQADDED---DLLEERMKSPFGSSFRTFNATDY 1341
Query: 1767 SDIATIPVDRCVLDFATERTDSFVGLITMD---DQEDMFSSARIYEIGRRR 1814
IATI V R + D T+ D ++ +I D +M + R+YE+GR+R
Sbjct: 1342 KPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQR 1392
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Component of the Cul4a-Rbx1-Ddb1-Vprbp/Dcaf1 E3 ubiquitin-protein ligase complex, Vprbp/Dcaf1 may function as the substrate recognition module within this complex (By similarity). Associated with chromatin in a Ddb1-independent and cell cycle-dependent manner, Vprbp/Dcaf1 is recruited to chromatin as DNA is being replicated and is released from chromatin before mitosis. Mus musculus (taxid: 10090) |
| >sp|Q9W2F2|DCAF1_DROME DDB1- and CUL4-associated factor-like 1 OS=Drosophila melanogaster GN=CG10080 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 196/410 (47%), Gaps = 40/410 (9%)
Query: 1418 ERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPK--RSLDAPSNVTARLGTR 1475
+RITL+++V +YL +QH C P+TT P L PH CP+PK R L + N+T+R
Sbjct: 1065 KRITLNTIVTEYLTNQHSLCNNPVTTCPQFDLYEPHKCPDPKPSRLLSSNYNLTSR---- 1120
Query: 1476 EFKSTYSGVHRNRRDRQFVYSRFRPWRTCR--DDAGALLTCITFLGDSSHIAVGSHTKEL 1533
T +G + +R DR++V++ F PWR+ R D TC G +I VG+ +
Sbjct: 1121 -HARTQAGFNTSRFDRRYVHTHFSPWRSIRSADYEDLEFTCCDLAG--KYIIVGTQQGDG 1177
Query: 1534 KIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMH 1590
++F+ N H V ++++ +G+ L+++SS + LW+ +
Sbjct: 1178 RVFNMNDGVEQFFSNCHNFSVDAIKANRAGD--LVITSSFWRTPTSILWSIADDEFKLKL 1235
Query: 1591 SFEGCKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648
FS + L T + L+DI T A + T NL + A
Sbjct: 1236 RLPDVTYCEFSQTVQDRLLG-----TQNECATLFDINTGSKVASFTPTIPNLYTKNRA-- 1288
Query: 1649 QIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFR 1708
+D ++L +G+LWD R+ +H+FD+F G FHP E+I N+EVWDLR F
Sbjct: 1289 --TLCRTDELILSDGVLWDVRSGKEIHKFDKFNQCISGVFHPNCLEIIANTEVWDLRTFH 1346
Query: 1709 LLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD 1768
LL++VP LDQ TF+ + A L + + M +F +DA +YS
Sbjct: 1347 LLQTVPVLDQRNCTFSPMHVIYGASLGADRDHDMETTTYD-------TSFNVLDAYDYSS 1399
Query: 1769 IATIPVDRCVLDFATERTDSFVGLIT----MDDQEDMFSSARIYEIGRRR 1814
IATI V R + D + S + ++ + +++ + +IY +G ++
Sbjct: 1400 IATIDVKRNINDLSVSANGSLIAVVEDYSGYESKQETY--VKIYAVGVKK 1447
|
Component of the CUL4-RBX1-DDB1-DCAF1 E3 ubiquitin-protein ligase complex, DCAF1 may function as the substrate recognition module within this complex. Drosophila melanogaster (taxid: 7227) |
| >sp|Q21106|DCAF1_CAEEL DDB1- and CUL4-associated factor homolog 1 OS=Caenorhabditis elegans GN=dcaf-1 PE=3 SV=5 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 195/401 (48%), Gaps = 26/401 (6%)
Query: 1422 LDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKSTY 1481
L+S+V Y ++QH C P+TT PP SL + H CPE + N++ R +E +
Sbjct: 1002 LNSIVTDYFRNQHSTCKNPVTTCPPFSLFYQHKCPELSYQTNVVRNISLRTLDQELLRPH 1061
Query: 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS 1541
V+ + + ++SRFR W+T D + T TF D H+ VG E+ + ++
Sbjct: 1062 ERVYSQWTNERTIFSRFRNWKTIHDHDES-YTKATFSVDDEHLIVGLFNGEVHWINVDTG 1120
Query: 1542 SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGCKAARF 1600
H + +T ++ G L S+ S+ + LW A +H++ +F
Sbjct: 1121 LDEGHTNCHGSALTNIEPSKDGSMMLTSSAFSRPLSALWRLGE-ALQRVHTYREDSCVKF 1179
Query: 1601 SNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659
+N+ + D+ +YD +T + L+ LS + G + + FSP D ++
Sbjct: 1180 ANTT--MQRIVGTCRDKAT-VYDTETNHVLDTYLS----GIDGLQYEKNYASFSPDDKLI 1232
Query: 1660 LWNGILWD-RRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLD 1717
+G+LWD R+ + +H FD+ + G FHP G +++INSEV+D+R FR+L VP L+
Sbjct: 1233 FNDGLLWDVRKKNSAIHVFDRLSKITLFGTFHPHGTQIVINSEVYDIRTFRMLHHVPELN 1292
Query: 1718 QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRC 1777
+ ++FN+ G+++YA ++ VH +F++FRT + +YS + T R
Sbjct: 1293 RCQVSFNSTGNIMYAT-------EVTDVHCPDYDEKIFSSFRTFETRDYSALTTFEGRRP 1345
Query: 1778 VLDFATERTDSFVGLI-----TMDDQEDMFSSA-RIYEIGR 1812
V+D D + +I M D S+ +I EIGR
Sbjct: 1346 VIDLCASHQDQKMCVIEKVRPQMSDYMIQASTQLKIVEIGR 1386
|
Component of the cul4-rbx1-ddb1-dcaf1 E3 ubiquitin-protein ligase complex, dcaf1 may function as the substrate recognition module within this complex. Caenorhabditis elegans (taxid: 6239) |
| >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) GN=rep PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 1766 YSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPTEDDSDPDDA 1825
Y A V+ + A E T V T++D ED+ + DD D
Sbjct: 915 YCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTG-----------DNDDEDVVTG 963
Query: 1826 ESDEEDEEDDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDEDDSVSDLDDEDDGDF 1879
++D+ED D+ D D + G + D D GD++ +D+ N DED D DDED
Sbjct: 964 DNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTG 1023
Query: 1880 MMDDVDYDGGGGLLEIVTEGDEDEDSQLV-----ESLSSGDEEDFI 1920
DD D G E V GD D++ + E + +GD +D I
Sbjct: 1024 DNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQI 1069
|
NendoU is a Mn(2+)-dependent, uridylate-specific enzyme, which leaves 2'-3'-cyclic phosphates 5' to the cleaved bond. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) GN=rep PE=3 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 22/159 (13%)
Query: 1766 YSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPTEDDSDPDDA 1825
Y A V+ + A E T V T++D ED+ + DD D
Sbjct: 915 YCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTG-----------DNDDEDVVTG 963
Query: 1826 ESDEEDEEDDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDEDDSVSDLDDEDDGDF 1879
++D+ED D+ D D + G + D D GD++ +D+ N DED D DDED
Sbjct: 964 DNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTG 1023
Query: 1880 MMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918
DD D G E V GD D+ E + +GD +D
Sbjct: 1024 DNDDEDVVTGDNDDEDVVTGDNDD-----EDVVTGDNDD 1057
|
NendoU is a Mn(2+)-dependent, uridylate-specific enzyme, which leaves 2'-3'-cyclic phosphates 5' to the cleaved bond. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1922 | ||||||
| 255574181 | 1871 | conserved hypothetical protein [Ricinus | 0.934 | 0.959 | 0.732 | 0.0 | |
| 356518282 | 1868 | PREDICTED: DDB1- and CUL4-associated fac | 0.929 | 0.956 | 0.720 | 0.0 | |
| 359476018 | 2024 | PREDICTED: DDB1- and CUL4-associated fac | 0.898 | 0.852 | 0.747 | 0.0 | |
| 224121468 | 1791 | predicted protein [Populus trichocarpa] | 0.858 | 0.921 | 0.727 | 0.0 | |
| 356509964 | 1857 | PREDICTED: DDB1- and CUL4-associated fac | 0.936 | 0.969 | 0.718 | 0.0 | |
| 449437358 | 1915 | PREDICTED: DDB1- and CUL4-associated fac | 0.891 | 0.895 | 0.715 | 0.0 | |
| 449505532 | 1900 | PREDICTED: LOW QUALITY PROTEIN: DDB1- an | 0.881 | 0.891 | 0.709 | 0.0 | |
| 296081815 | 1760 | unnamed protein product [Vitis vinifera] | 0.833 | 0.910 | 0.705 | 0.0 | |
| 297802916 | 1872 | transducin family protein [Arabidopsis l | 0.852 | 0.875 | 0.606 | 0.0 | |
| 240256109 | 1883 | DDB1- and CUL4-associated factor-1 [Arab | 0.866 | 0.884 | 0.608 | 0.0 |
| >gi|255574181|ref|XP_002528006.1| conserved hypothetical protein [Ricinus communis] gi|223532632|gb|EEF34418.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2571 bits (6665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1413/1929 (73%), Positives = 1575/1929 (81%), Gaps = 133/1929 (6%)
Query: 30 EDETKKVEEELMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSS-NNA 88
ED T EEELM KAQKLM++ITSSPDNPNP+VLHALSSL E QESLY+E++G+SS NN+
Sbjct: 38 EDGTVNEEEELMDKAQKLMDRITSSPDNPNPTVLHALSSLLEAQESLYMEKNGYSSFNNS 97
Query: 89 RASHNIGRLGNLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEE 148
RASHNIGRLGNLVREND+FF+LIS+KFLSE+RYSTSVQAAAARL++SCSLTWIYPH FEE
Sbjct: 98 RASHNIGRLGNLVRENDEFFDLISTKFLSETRYSTSVQAAAARLLMSCSLTWIYPHVFEE 157
Query: 149 PVVDNVKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVED 208
PV++N+KNWVMDETAR S E+RH KH +KEASDSEMLK Y+TGLLAVCLAGGGQVVED
Sbjct: 158 PVIENIKNWVMDETAR-SGEERHWKHDTGKKEASDSEMLKCYSTGLLAVCLAGGGQVVED 216
Query: 209 VLTSGLSAKLMRYLRIRVLGETS--QKDANHLAESKNSASATSLRGREEGRVRLRQILE- 265
VLTSGLSAKLMR+LRIRVL ETS QKDA L ESKN ++AT +RGREEGR R+RQ+LE
Sbjct: 217 VLTSGLSAKLMRFLRIRVLAETSTNQKDATFLMESKNLSAATCIRGREEGRGRVRQVLEA 276
Query: 266 -HPDE-RTIDERSLDDQDIERVTHGDECGADDGEPHDGLAAGIDMSEA-------YTDAR 316
H D R DER+LDD GEP D L G+D+ + D R
Sbjct: 277 THVDNLRINDERTLDD-------------PIGGEPPDRLVEGVDVVDEDGGDRWNSRDPR 323
Query: 317 EGKTKLGDNDETGRDDSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRS 376
+GK K GD D++G+DDSSRRR +RG R RGKGR +E A E +QGLTSP SGSR GQ R
Sbjct: 324 DGKIKFGDLDDSGKDDSSRRRPSRGLARPRGKGRASEAASENEQGLTSPGSGSRSGQGRI 383
Query: 377 IRDRSVSKSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVR 436
RDR++ KS D ++ + RK+ G + DG +ERED DDCFQEC++G+KDISD+VKKAVR
Sbjct: 384 FRDRNLIKSLDLRRGQEARKYPGNLNPDGFIVEREDTDDCFQECKIGTKDISDLVKKAVR 443
Query: 437 AAEAEARAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAAD 496
AAEAEA AANAP EAIKAAGDAAAEVVKSAA EEFK++N E+AA+LAA+RAASTVIDAA+
Sbjct: 444 AAEAEATAANAPAEAIKAAGDAAAEVVKSAALEEFKSSNSEEAAVLAAARAASTVIDAAN 503
Query: 497 AVEVSRNSISNNVDSVSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVE 556
AVEVSRN SN+ DSV+ TETE ED EEYF+PD ESLAQ+REK+CIQCLE LGEYVE
Sbjct: 504 AVEVSRNRCSND-DSVTSGGTETEATEDAEEYFVPDSESLAQIREKFCIQCLEILGEYVE 562
Query: 557 VLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGM 616
VLGPVLHEKGVDVCLALLQRSSK E SK A LLPDVMKLICALAAHRKFAALFVDR GM
Sbjct: 563 VLGPVLHEKGVDVCLALLQRSSKLTEVSKAATLLPDVMKLICALAAHRKFAALFVDRSGM 622
Query: 617 QKLLAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQAR 676
QKLLAVPR QTFFGLSSCLFTIGSLQGIMERVCALP+DVV+Q+VELAIQLLEC QDQAR
Sbjct: 623 QKLLAVPRVEQTFFGLSSCLFTIGSLQGIMERVCALPSDVVYQVVELAIQLLECPQDQAR 682
Query: 677 KNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDR 736
KNAALFF AAFVFRA+IDAFDAQDGLQKLLGLLNDAA+VRSGVN+GA+ LS +++LRNDR
Sbjct: 683 KNAALFFGAAFVFRAVIDAFDAQDGLQKLLGLLNDAAAVRSGVNSGALNLSGASALRNDR 742
Query: 737 SPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLD 796
SPPEVLTSSEKQIAYHTCVALRQYFRAHLLLL+D+IRP K+NRS RNIP+VRAAYKPLD
Sbjct: 743 SPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLLDTIRPYKNNRSVARNIPSVRAAYKPLD 802
Query: 797 ISNEAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLL 856
+SNEA+DAVFLQLQKDRKLG A VRTR+PAVD+FL NGHIT+LELCQAPPVERYLHDLL
Sbjct: 803 LSNEAVDAVFLQLQKDRKLGSAFVRTRFPAVDKFLLFNGHITMLELCQAPPVERYLHDLL 862
Query: 857 QYALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLIN 916
QYALGVLHIVTLV +SRKMIVNATLSNN GIAVILDAAN +YVD EIIQPALNVLIN
Sbjct: 863 QYALGVLHIVTLVNDSRKMIVNATLSNNRVGIAVILDAANISGNYVDHEIIQPALNVLIN 922
Query: 917 LVCPPPSISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERN 976
LVCPPPSISNKPPLLAQGQQ+ SGQ +N +M D +A R++S
Sbjct: 923 LVCPPPSISNKPPLLAQGQQTASGQFTNASAM---DASATRSIS---------------- 963
Query: 977 VDSSLLDRGSSANTQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQA 1036
STSQTPVPT SGLVGDRRI LG GAGCAGLAAQ+EQGYRQA
Sbjct: 964 ------------------STSQTPVPTAASGLVGDRRIFLGTGAGCAGLAAQMEQGYRQA 1005
Query: 1037 REAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKK 1096
REAVRANNGIKVLLHLLQPRIYSPPAALDC+RALACRVLLGLARDDTIAHILTKLQ
Sbjct: 1006 REAVRANNGIKVLLHLLQPRIYSPPAALDCIRALACRVLLGLARDDTIAHILTKLQ---- 1061
Query: 1097 LSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERA 1156
IVTNSGRASTLAATDAATPTLRRIERA
Sbjct: 1062 ---------------------------------IVTNSGRASTLAATDAATPTLRRIERA 1088
Query: 1157 AIAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQ 1216
AIAAATPI+YHSRELLLL+HEHLQASGL TAA LLKEAQLTPLPSLAA SSL HQ +TQ
Sbjct: 1089 AIAAATPITYHSRELLLLMHEHLQASGLAATAATLLKEAQLTPLPSLAAASSLMHQTTTQ 1148
Query: 1217 ESPSIQIQWPSGRSP-GFLTGKSKLAARDEDISLKCDSSMSSKKKQLVFSPSFNLQSRHQ 1275
E+PS Q+QWPSGR+P GF+ KSK ARDED L+C+S++SSKKK LVFSP+FN QSR Q
Sbjct: 1149 ETPSTQLQWPSGRTPCGFMCKKSKAIARDEDSCLRCESALSSKKKPLVFSPTFNSQSRIQ 1208
Query: 1276 SQSHDSQTPSSRKVFSNSKQSAVPSVL-EIPHESVSKSNPDTDSQSKTPIALPMKRKLSE 1334
S + DS S +K S KQSA L E E++ K+NPDT+S KTPI LPMKRKLS+
Sbjct: 1209 SLTLDSNQSSFKKASSGPKQSAAAGNLSEALPEALPKNNPDTESLCKTPIVLPMKRKLSD 1268
Query: 1335 LKDTGLSLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGF-------------STPG 1381
LKD GL+ SGKR++TG+ GLRSP C TPN+VRK+SLL D G+ STP
Sbjct: 1269 LKDVGLASSGKRVNTGEHGLRSPVCLTPNAVRKNSLLGDTVGYCTPISNLRDLHGRSTPS 1328
Query: 1382 SLAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPI 1441
SL +YLDDNQ GN Q G LND QPSNSER+TLDSLVVQYLKHQHRQCPAPI
Sbjct: 1329 SLVDYLDDNQYGN--------CTQPGLLNDHQPSNSERLTLDSLVVQYLKHQHRQCPAPI 1380
Query: 1442 TTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPW 1501
TTLPPLSLLHPHVCPEPKRS+DAPSNVTARLGTREF+S Y GVH NRRDRQFVYSRFR
Sbjct: 1381 TTLPPLSLLHPHVCPEPKRSIDAPSNVTARLGTREFRSIYGGVHGNRRDRQFVYSRFRLL 1440
Query: 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHL 1561
RTCRDDA ALLTCITFLGDSSH+ VGSHT ELKIFDSNS+S LESCTSHQ+P+T +QS++
Sbjct: 1441 RTCRDDADALLTCITFLGDSSHLGVGSHTGELKIFDSNSNSVLESCTSHQSPLTFIQSYI 1500
Query: 1562 SGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILL 1621
GETQLLLSSSSQDV LW+ASSI+GGP+HS +GCKAARFSNSGN+FA L E + R ILL
Sbjct: 1501 YGETQLLLSSSSQDVRLWDASSISGGPVHSLDGCKAARFSNSGNVFATLTVEPARREILL 1560
Query: 1622 YDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFT 1681
YD+QT Q+E+ LSDT + TGRGH YS IHFSPSDTMLLWNG+LWDRR S PVHRFDQFT
Sbjct: 1561 YDVQTCQVESTLSDTVSSFTGRGHVYSLIHFSPSDTMLLWNGVLWDRRQSGPVHRFDQFT 1620
Query: 1682 DHGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDV 1741
D+GGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQT ITFNARGDVIYAILRRNL+DV
Sbjct: 1621 DYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTAITFNARGDVIYAILRRNLDDV 1680
Query: 1742 MSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDM 1801
MSAVHTRRVKHPLFAAF TVDAINYS+IATIPVDRCVLDFA+E TDSFVGLITMDDQE+M
Sbjct: 1681 MSAVHTRRVKHPLFAAFHTVDAINYSEIATIPVDRCVLDFASEATDSFVGLITMDDQEEM 1740
Query: 1802 FSSARIYEIGRRRPT---EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGD-SEGD 1857
+SSARIYEIGRRRPT D D D E +E+D++DD+D DVDP+LGADLDGDG+ D
Sbjct: 1741 YSSARIYEIGRRRPTDDDSDPDDADSEEDEEDDDDDDEDGDVDPILGADLDGDGESDADD 1800
Query: 1858 DLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGG-GLLEIVTEGD-EDEDSQLVESLSSGD 1915
++ D+D + D+EDDGDFMMD +D+DGGG G+LEIVTEGD ED+DSQLVES SSG+
Sbjct: 1801 MSNDDDDDSASDLDDEEDDGDFMMDGMDFDGGGAGILEIVTEGDEEDDDSQLVESYSSGE 1860
Query: 1916 EEDFI--GF 1922
E+DF+ GF
Sbjct: 1861 EDDFVSNGF 1869
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518282|ref|XP_003527808.1| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2488 bits (6448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1360/1888 (72%), Positives = 1545/1888 (81%), Gaps = 101/1888 (5%)
Query: 40 LMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSSNN-ARASHNIGRLG 98
L+AK KLMEKITS+PDNPN +VLHAL+S+ E QES Y+EE+G SS++ ARA+H IGRLG
Sbjct: 25 LIAKVNKLMEKITSAPDNPNATVLHALASILEAQESRYMEENGHSSSSTARAAHIIGRLG 84
Query: 99 NLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDNVKNWV 158
L+REND+FFELISSKFL E+RYSTS+QAA+ RL+L CSLTWIYPH FEE V++N+KNWV
Sbjct: 85 GLIRENDEFFELISSKFLLETRYSTSIQAASGRLLLCCSLTWIYPHVFEESVMENIKNWV 144
Query: 159 MDETARLSCEDRHLKHHMSRKEA-SDSEMLKTYATGLLAVCLAGGGQVVEDVLTSGLSAK 217
MD+ L E+++L+H+ R EA SDSEMLKTY+TGLLAVCL G GQ+VEDVLTSGLSAK
Sbjct: 145 MDDNTGLPAEEQNLRHNPGRSEAASDSEMLKTYSTGLLAVCLDGQGQIVEDVLTSGLSAK 204
Query: 218 LMRYLRIRVLGETS--QKDANHLAESKNSASATSLRGREEGRVRLRQILEH---PDERTI 272
LMRYLRI VLGETS QKD H+ ES+++++ TS RGR++GR R RQ+LE D + I
Sbjct: 205 LMRYLRISVLGETSGNQKDVTHITESRHASTNTSARGRDDGRGRFRQLLESNHLDDTKMI 264
Query: 273 DERSLDDQDIERVTHGDECGADDGEPHDGLAAGIDMSEAYTDA---------REGKTKLG 323
DERSLDD +ERV DGEP DGL G D+ + +D R+G+ K G
Sbjct: 265 DERSLDDVTLERV---------DGEPPDGLGEGTDVHKVDSDGEDTWRCRDIRDGRIKYG 315
Query: 324 DNDETGRDDSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRDRSVS 383
++D+ RDDSSRRR NRGW RSRGKGR+NEGA+E+D L+SP SGSRLGQ RS+RDRS+
Sbjct: 316 EHDDNIRDDSSRRRANRGWGRSRGKGRVNEGAVESDPILSSPGSGSRLGQGRSVRDRSIL 375
Query: 384 KSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAEAEAR 443
+++D ++ D +K G I S+ ERED DDCF+ECR+GSKDI+D+V+KAVR+AEAEAR
Sbjct: 376 RNADVRRGADSKKTLGRIPSEASAFEREDDDDCFEECRIGSKDITDLVRKAVRSAEAEAR 435
Query: 444 AANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVEVSRN 503
+ANAP EA+KAAGDAAA++VK+AASEE+K++NDE+AA LAASRA STVIDAA AVE
Sbjct: 436 SANAPEEAVKAAGDAAADLVKTAASEEYKSSNDEEAAFLAASRATSTVIDAASAVE---- 491
Query: 504 SISNNVDSVSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLH 563
+VS ETETNEDVEEYFIPD +SLAQLREKYCIQCLE LGEYVEVLGPVLH
Sbjct: 492 ---------NVSGKETETNEDVEEYFIPDTKSLAQLREKYCIQCLELLGEYVEVLGPVLH 542
Query: 564 EKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVP 623
EKGVDVCL LLQ++SK+ E SKVA+LLPDVMKLICALAAHRKFAALFVDRGGMQKLL VP
Sbjct: 543 EKGVDVCLGLLQKNSKHWEASKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLDVP 602
Query: 624 RNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFF 683
R QTFFGLSSCLFTIGSLQGIMERVCALP+ VV+++VELA+QLL+C QDQARKNAALFF
Sbjct: 603 RMPQTFFGLSSCLFTIGSLQGIMERVCALPSKVVNEVVELALQLLDCNQDQARKNAALFF 662
Query: 684 AAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLT 743
AAAFVFRA++DAFD+ DGLQKLLGLLNDAASVRSGVN+GA+ LS+S SLRNDRS EVLT
Sbjct: 663 AAAFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGVNSGALNLSNSGSLRNDRSSAEVLT 722
Query: 744 SSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDISNEAID 803
SSEKQIAYHTCVALRQYFRAHLL+LVDSIRPNKSNRSA RNIP+VRA YKPLDISNEA+D
Sbjct: 723 SSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMD 782
Query: 804 AVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVL 863
AVFLQLQKDRKLGPA VRTRW AV++FL+ NGHIT+LELCQAPPVERYLHDLLQYALGVL
Sbjct: 783 AVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHITMLELCQAPPVERYLHDLLQYALGVL 842
Query: 864 HIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPS 923
HIVTLVP+SRKMIVN TLSNN GIAVILDAAN S++VDPEIIQPALNVL+NLVCPPPS
Sbjct: 843 HIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPS 902
Query: 924 ISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLD 983
ISNKP ++AQGQQ S QTSN D
Sbjct: 903 ISNKPAMVAQGQQLASSQTSN--------------------------------------D 924
Query: 984 RGSSA--NTQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVR 1041
RGS++ +TQ S QTPV + SGLVGDRRISLGAGAGCAGLAAQLEQGYRQARE VR
Sbjct: 925 RGSASGLSTQPVNSLPQTPVASAASGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREVVR 984
Query: 1042 ANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELI 1101
+NNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELI
Sbjct: 985 SNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELI 1044
Query: 1102 RDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAAIAAA 1161
RDSG QT TEQGRWQAELSQ AIELI IVTNSGRASTLAATDAATPTLRRIERAAIAAA
Sbjct: 1045 RDSGSQTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAA 1104
Query: 1162 TPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQESPSI 1221
TPI+YHSRELLLLIHEHLQASGL TA+ LLKEAQLTPLPSL PSSLA Q TQE+ S
Sbjct: 1105 TPITYHSRELLLLIHEHLQASGLAQTASMLLKEAQLTPLPSLVPPSSLAQQPITQEASST 1164
Query: 1222 QIQWPSGRS-PGFLTGKSKLAARDEDISLKCDSSMSSKKKQLVFSPSFNLQSRHQSQSHD 1280
QIQWPSGR+ GFLT K + A+D+D LK D S+S+KKK L FS SF+ + +H D
Sbjct: 1165 QIQWPSGRALSGFLTHKLRFNAKDDDAGLKSD-SVSAKKKSLTFSSSFHSRFQHL----D 1219
Query: 1281 SQTPSSRKVFSNSKQSAVPSVLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELKDTGL 1340
SQ+ S +K+ K+S+ +V+E S K N DT SQ KTPI LP KRKLS+LKD +
Sbjct: 1220 SQS-SVKKLSDTGKESSETTVVETTFGSSVKHNIDTGSQFKTPITLPAKRKLSDLKDISM 1278
Query: 1341 -SLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGFSTPG-------SLAEYLDDNQC 1392
S SGKRL+ GD G RSP C + +RKS L +D G +P + + +D+N
Sbjct: 1279 FSSSGKRLNVGDQGFRSPICSS--VIRKSCLQSDAVGLFSPTCNLKQSRCMGDLVDENHS 1336
Query: 1393 GNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHP 1452
+ + Q TPS Q+ LND QP+N+ER+TLDSLVVQYLKHQHRQCPAPITTLPPLSLLHP
Sbjct: 1337 IS-NLVQMTPSSQV--LNDLQPNNAERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHP 1393
Query: 1453 HVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALL 1512
HVCPEPKRSLDAPSNVTARLGTREFK Y GVH NRRDRQFVYSRFRPWRTCRDDAGALL
Sbjct: 1394 HVCPEPKRSLDAPSNVTARLGTREFKYMYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALL 1453
Query: 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS 1572
TCITF+GDSSHIAVGSH ELK FDSN+S+ +ES T HQ+P+TLVQS +SGETQLLLSSS
Sbjct: 1454 TCITFVGDSSHIAVGSHNGELKFFDSNNSNVVESYTGHQSPLTLVQSFVSGETQLLLSSS 1513
Query: 1573 SQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632
SQDV LW+A+SI GGP HSFEGCKAARFSNSGN+FAAL +E++ R ILLYDIQT +E+K
Sbjct: 1514 SQDVRLWDATSILGGPSHSFEGCKAARFSNSGNVFAALSSESARREILLYDIQTCHIESK 1573
Query: 1633 LSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAG 1692
LSDT TGRGH YS IHF+PSD+MLLWNG+LWDRR S PVHRFDQFTD+GGGGFHPAG
Sbjct: 1574 LSDTFAASTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAG 1633
Query: 1693 NEVIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKH 1752
NEVIINSEVWDLRKFRLLRSVPSLDQT+ITFNARGDV+YAILRRNLEDVMSAVHTRRVKH
Sbjct: 1634 NEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKH 1693
Query: 1753 PLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812
PLFAAFRTVDAINYSDIATIPVDRCVLDFA E TDSFVGLITMDDQ++M++SARIYEIGR
Sbjct: 1694 PLFAAFRTVDAINYSDIATIPVDRCVLDFAAEPTDSFVGLITMDDQDEMYASARIYEIGR 1753
Query: 1813 RRPT-EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDL 1871
RRPT +D D +E++++DDDD DVDPLLG L GDS D S++DD S
Sbjct: 1754 RRPTDDDSDPDDAESEEEDEDDDDDDPDVDPLLGPGL--GGDSCSDADDMSNDDDDDSVS 1811
Query: 1872 DDEDDGDFMMDDVDYDGGGGLLEIVTEG 1899
D ++DGDF++DDVD+DGG G+LEIVTEG
Sbjct: 1812 DLDEDGDFILDDVDFDGGPGILEIVTEG 1839
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476018|ref|XP_002280997.2| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2476 bits (6418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1355/1812 (74%), Positives = 1509/1812 (83%), Gaps = 86/1812 (4%)
Query: 30 EDETKKVEEELMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSS-NNA 88
++E ++ L +K QKLMEKITSSPDNPNPSVLHALSS+ E QES Y+EE+G SS NN
Sbjct: 161 QEEDSGDDDSLQSKVQKLMEKITSSPDNPNPSVLHALSSILETQESRYMEETGHSSLNNG 220
Query: 89 RASHNIGRLGNLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEE 148
RA+H IGRLG+LVR+NDDFFELISSKFLSESRYS SVQAAAARL+L CSLT +YPH FEE
Sbjct: 221 RATHIIGRLGSLVRDNDDFFELISSKFLSESRYSISVQAAAARLLLICSLTLVYPHVFEE 280
Query: 149 PVV-DNVKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVE 207
VV +N+KNWVMDE AR S EDR K+ RKEASDSEML+TY+TGLLA+CLAGGGQVVE
Sbjct: 281 TVVLENIKNWVMDENARFSGEDRSWKNDSGRKEASDSEMLRTYSTGLLALCLAGGGQVVE 340
Query: 208 DVLTSGLSAKLMRYLRIRVLGET--SQKDANHLAESKNSASATSLRGREEGRVRLRQILE 265
DVLTSGLSAKLMRYLR RVLGET SQKD +H+AESKN+ AT +RGR+EGR RLR +LE
Sbjct: 341 DVLTSGLSAKLMRYLRTRVLGETNTSQKDGSHIAESKNTPGATCMRGRDEGRSRLRLVLE 400
Query: 266 --HPDE-RTIDERSLDDQDIERVTHGDECGADDGEPHDGLAAGIDMSEAYTDAREGKTKL 322
H D+ R IDE SL DQ+ E AD + G D R+ KTK
Sbjct: 401 TNHLDDPRIIDEGSLHDQN-----DMYEVDADGEDRWHG-----------RDLRDLKTKF 444
Query: 323 GDNDETGRDDSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRDRSV 382
GD+DE RDDS +RR NRG R +GKGR+NEGAIE + LTSP SGSRLGQ RSIRDRS+
Sbjct: 445 GDHDENVRDDS-KRRANRGLSRLKGKGRVNEGAIENEHALTSPGSGSRLGQGRSIRDRSL 503
Query: 383 SKSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAEAEA 442
S++ DTK+APD +K G +DG MERED DD FQEC+VGSKDISD+VKKAV++AEAEA
Sbjct: 504 SRNLDTKRAPDAKKCFGRTIADGFPMEREDNDDRFQECKVGSKDISDLVKKAVKSAEAEA 563
Query: 443 RAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVEVSR 502
+ ANAPLEAIKAAGDAAAEVVKSAA EEFKTTNDE+AA+LAAS+AASTVIDAA+A+EVSR
Sbjct: 564 KEANAPLEAIKAAGDAAAEVVKSAALEEFKTTNDEEAAILAASKAASTVIDAANAIEVSR 623
Query: 503 NSISNNVDSVSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVL 562
I TETE NE+VEE+FI D +SLAQLREKYCIQCLE LGEYVEVLGPVL
Sbjct: 624 LVIL-------YRCTETEINEEVEEFFIMDADSLAQLREKYCIQCLEILGEYVEVLGPVL 676
Query: 563 HEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAV 622
HEKGVDVCLALLQRSSK +E SK+AMLLPDV+KLICALAAHRKFAA+FVDRGGMQKLLAV
Sbjct: 677 HEKGVDVCLALLQRSSKLKEASKLAMLLPDVLKLICALAAHRKFAAVFVDRGGMQKLLAV 736
Query: 623 PRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALF 682
PR TFFGLSSCLFTIGSLQGIMERVCALP++VVHQ+VELA+QLLEC+QDQARKNAALF
Sbjct: 737 PRVALTFFGLSSCLFTIGSLQGIMERVCALPSEVVHQVVELALQLLECSQDQARKNAALF 796
Query: 683 FAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVL 742
FAAAFVFRA++D+FDAQDGLQKLL LL+DAASVRSGVN+G +GLS+S SLRNDRSPPEVL
Sbjct: 797 FAAAFVFRAVLDSFDAQDGLQKLLSLLHDAASVRSGVNSGGLGLSNSGSLRNDRSPPEVL 856
Query: 743 TSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDISNEAI 802
TSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNK+NRSA RN+P+VRAAYKPLD+SNEA+
Sbjct: 857 TSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKNNRSAARNLPSVRAAYKPLDLSNEAM 916
Query: 803 DAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGV 862
DAVFLQLQKDRKLGPA VR RW AVD+FL+ NGHIT+LELCQAPPVERYLHDLLQYALGV
Sbjct: 917 DAVFLQLQKDRKLGPAFVRARWLAVDKFLTSNGHITMLELCQAPPVERYLHDLLQYALGV 976
Query: 863 LHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPP 922
LHIVTLVP SRK+IVN TLSNN GIAVILDAAN +S+VDPEIIQPALNVL+NLVCPPP
Sbjct: 977 LHIVTLVPYSRKLIVNVTLSNNRVGIAVILDAANG-ASFVDPEIIQPALNVLVNLVCPPP 1035
Query: 923 SISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLL 982
SIS KPP+LAQGQQS S QTSNGP+ME R N
Sbjct: 1036 SISLKPPVLAQGQQSASVQTSNGPAMEARVSAVSIN------------------------ 1071
Query: 983 DRGSSANTQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRA 1042
STSQTP+PT SGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRA
Sbjct: 1072 ------------STSQTPIPTIASGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRA 1119
Query: 1043 NNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIR 1102
N+GIKVLLHLLQPRI SPPA LDCLRALACRVLLGLARDD IAHILTKLQVGKKLSELIR
Sbjct: 1120 NSGIKVLLHLLQPRIVSPPATLDCLRALACRVLLGLARDDAIAHILTKLQVGKKLSELIR 1179
Query: 1103 DSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAAIAAAT 1162
DSG QT EQGRWQAEL+QVAIELI IVTNSGRASTLAATDAATPTLRRIERAAIAAAT
Sbjct: 1180 DSGSQTSGNEQGRWQAELAQVAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAAT 1239
Query: 1163 PISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQESPSIQ 1222
PI+YHSRELLLLIHEHLQASGL TTAAQLLKEAQLTPLPSLAAPSSL HQ S+QE+PS+Q
Sbjct: 1240 PITYHSRELLLLIHEHLQASGLSTTAAQLLKEAQLTPLPSLAAPSSLVHQASSQETPSMQ 1299
Query: 1223 IQWPSGR-SPGFLTGKSKLAARDEDISLKCDSSMSSKKKQ-LVFSPSFNLQSRHQSQSHD 1280
+QWPSGR + GFL+ K K +DED L DSS+SS KK+ LVFS + + Q R+Q QSHD
Sbjct: 1300 LQWPSGRIAGGFLSNKLKPTTKDEDSCLNSDSSVSSSKKKPLVFSSTLSFQFRNQPQSHD 1359
Query: 1281 SQTPSSRKVFSNSKQSAVP-SVLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELKDTG 1339
+Q+P+ KVFS SK+S+ P SV E P + SK N D +SQ KTPI LPMKRKL+ELKD G
Sbjct: 1360 AQSPAISKVFSTSKKSSAPASVPETPSVTTSKPNLDAESQYKTPIILPMKRKLTELKDVG 1419
Query: 1340 LSLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGFSTP--------------GSLAE 1385
L+ S KRL+T +LGL SP C TPN+VRKS+LLND GFSTP L +
Sbjct: 1420 LASSVKRLNTSELGLHSPVCSTPNTVRKSNLLNDAIGFSTPCCTPRDQYGRPTPSSVLTD 1479
Query: 1386 YLDDNQCGNYHAGQATP-SFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPITTL 1444
LDDNQCG H GQ TP SFQLG+LNDP N+ER+TLDSLVVQYLKHQHRQCPAPITTL
Sbjct: 1480 NLDDNQCGIPHLGQMTPSSFQLGSLNDPHTGNTERLTLDSLVVQYLKHQHRQCPAPITTL 1539
Query: 1445 PPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTC 1504
PPLSLLHPH+CPEP+RSLDAPSNVTARL TREF++ + G+H NRRDRQF+YSRFRPWRTC
Sbjct: 1540 PPLSLLHPHICPEPRRSLDAPSNVTARLSTREFRNVHGGIHGNRRDRQFIYSRFRPWRTC 1599
Query: 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE 1564
RDD LLT + FLGDS+ IA GSH+ ELK FD NSS+ LES T HQ P+TLVQS+LSG+
Sbjct: 1600 RDDGNGLLTSLAFLGDSAQIAAGSHSGELKFFDCNSSTMLESFTGHQYPLTLVQSYLSGD 1659
Query: 1565 TQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDI 1624
TQL+LSSSS DV LW+ASSI+GGP H F+GCKAARFSNSG +FAAL +E+S R IL+YDI
Sbjct: 1660 TQLVLSSSSHDVRLWDASSISGGPRHPFDGCKAARFSNSGTIFAALSSESSRREILVYDI 1719
Query: 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHG 1684
QT QL+ KL+DTS + GRGH Y IHFSPSDTMLLWNG+LWDRR S PVHRFDQFTD+G
Sbjct: 1720 QTLQLDLKLADTSASSAGRGHVYPLIHFSPSDTMLLWNGVLWDRRGSGPVHRFDQFTDYG 1779
Query: 1685 GGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSA 1744
GGGFHPAGNEVIINSEVWDLRKFRLLR+VPSLDQT ITFN+RGDVIYAILRRNLED+MSA
Sbjct: 1780 GGGFHPAGNEVIINSEVWDLRKFRLLRTVPSLDQTVITFNSRGDVIYAILRRNLEDIMSA 1839
Query: 1745 VHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSS 1804
VH+RR KHPLF+AFRTVDA+NYSDIATI VDRCVLDFATE TDSFVGL++MDD ++MFSS
Sbjct: 1840 VHSRRAKHPLFSAFRTVDAVNYSDIATITVDRCVLDFATEPTDSFVGLVSMDDHDEMFSS 1899
Query: 1805 ARIYEIGRRRPT 1816
AR+YEIGRRRPT
Sbjct: 1900 ARMYEIGRRRPT 1911
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121468|ref|XP_002330835.1| predicted protein [Populus trichocarpa] gi|222872637|gb|EEF09768.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2447 bits (6341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1285/1767 (72%), Positives = 1437/1767 (81%), Gaps = 117/1767 (6%)
Query: 78 LEESGFSS-NNARASHNIGRLGNLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSC 136
++E+G SS NN+RASHNIGRLG+LVR+ND+FFELISS+FLSE+RYSTS+QAAAARL+++C
Sbjct: 1 MKENGNSSFNNSRASHNIGRLGSLVRDNDEFFELISSRFLSETRYSTSIQAAAARLLMTC 60
Query: 137 SLTWIYPHAFEEPVVDNVKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLA 196
SLTWIYPH FE+PV++N+K WVMDE R EDR+ KH M RKE SDSEMLKTY+TGLLA
Sbjct: 61 SLTWIYPHVFEDPVMENIKAWVMDEATRFPSEDRNWKHDMERKEGSDSEMLKTYSTGLLA 120
Query: 197 VCLAGGGQVVEDVLTSGLSAKLMRYLRIRVLGETS--QKDANHLAESKNSASATSLRGRE 254
V LA GGQ+VEDVLTSGLSAKLMRYLRIRVLGE S QKDA++L E KN++SAT +RGRE
Sbjct: 121 VGLASGGQIVEDVLTSGLSAKLMRYLRIRVLGEASASQKDASYLTEGKNASSATCIRGRE 180
Query: 255 EGRVRLRQILEHPDERTI---DERSL---DDQDIERVTH-GDECGADDGEPHDGLAAGID 307
EGR R+RQ+ E E I DERSL D++ +E V D+ AD GE G
Sbjct: 181 EGRCRVRQLPEATLENNIRAADERSLADLDERSLESVGEDNDDIDADGGERRHG------ 234
Query: 308 MSEAYTDAREGKTKLGDNDETGRDDSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVS 367
D R+ KTK + DE+GRDD RRR +RGW R RG+GR+NE A+E +Q TSP S
Sbjct: 235 -----RDLRDVKTKFAELDESGRDDLLRRRPSRGWTRHRGRGRVNETALENEQVSTSPDS 289
Query: 368 GSRLGQVRSIRDRSVSKSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDI 427
GSR G RS RDR+ D KK PD RK G + SDG+ +ER+D DDCFQ CR+G+KDI
Sbjct: 290 GSRSGPGRSARDRNSKNLLDVKKGPDTRKFQGNMHSDGLAVERDDNDDCFQGCRIGTKDI 349
Query: 428 SDMVKKAVRAAEAEARAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRA 487
SD+VKKAV+AAEAEAR ANAP AIKAAGDAAAE VKSAA EEFK++N E+AA+LAASRA
Sbjct: 350 SDLVKKAVQAAEAEARGANAPAGAIKAAGDAAAEDVKSAALEEFKSSNSEEAAVLAASRA 409
Query: 488 ASTVIDAADAVEVSRNSISNNVDSVSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQC 547
ASTVIDAA+A+EVSR + NED EEYFIPD+ESLAQLREKYCIQC
Sbjct: 410 ASTVIDAANAIEVSR-------------LVFHFLNEDAEEYFIPDLESLAQLREKYCIQC 456
Query: 548 LETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFA 607
LE LGEYVEVLGPVLHEKGVDVCLALLQRS K++ S LLPDVMKLICALAAHRKFA
Sbjct: 457 LEILGEYVEVLGPVLHEKGVDVCLALLQRSYKHKGSSTAVTLLPDVMKLICALAAHRKFA 516
Query: 608 ALFVDRGGMQKLLAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQL 667
ALFVDR GMQKLL++PR ++TFFGLSSCLFTIGSLQGIMERVCALP+DVVHQ+VELAIQL
Sbjct: 517 ALFVDRSGMQKLLSIPRVDETFFGLSSCLFTIGSLQGIMERVCALPSDVVHQVVELAIQL 576
Query: 668 LECTQDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLS 727
LEC QDQARKNAALFF AAFVFRA+IDAFDAQDGL KLL LLNDAASVRSGVN+GA+ LS
Sbjct: 577 LECLQDQARKNAALFFGAAFVFRAVIDAFDAQDGLHKLLTLLNDAASVRSGVNSGALNLS 636
Query: 728 SSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPN 787
+ST+LRNDRS EVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNK+NR+ RN+P+
Sbjct: 637 NSTALRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKNNRNVARNVPS 696
Query: 788 VRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPP 847
VRAAYKPLDISNEA+DAVFLQLQKDRKLG A VRTR+PAVD+FL NGH+T+LELCQAPP
Sbjct: 697 VRAAYKPLDISNEAMDAVFLQLQKDRKLGSAFVRTRFPAVDKFLGFNGHVTMLELCQAPP 756
Query: 848 -VERYLHDLLQYALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEI 906
VERYLHDLLQYA GVLHIVTLV +SRKMIVNATLSNN GIA+ILDAAN S+YVDPEI
Sbjct: 757 IVERYLHDLLQYAFGVLHIVTLVNDSRKMIVNATLSNNRVGIAIILDAANISSNYVDPEI 816
Query: 907 IQPALNVLINLVCPPPSISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYM 966
IQPALNVLINLVCPPPSISNKPPL+A GQQSVSGQ+SN V M
Sbjct: 817 IQPALNVLINLVCPPPSISNKPPLIAPGQQSVSGQSSNP------------------VQM 858
Query: 967 PSQSDLRERNVDSSLLDRGSSAN--TQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAG 1024
P Q++ +RN +SS +DR + ++ A STSQTPVPT SGLVGDRRI LG GAGCAG
Sbjct: 859 PGQTE--QRNGESSAVDRSIAVGSASRSASSTSQTPVPTAASGLVGDRRIYLGTGAGCAG 916
Query: 1025 LAAQLEQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTI 1084
LAAQ+EQ YRQAR+AVRANNGIKVLLHLLQPR YSPPAALDC+RALACRVLLGLARDDTI
Sbjct: 917 LAAQMEQVYRQARDAVRANNGIKVLLHLLQPRAYSPPAALDCIRALACRVLLGLARDDTI 976
Query: 1085 AHILTKLQVGKKLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATD 1144
AHILTKLQ IVTNSGRASTLAATD
Sbjct: 977 AHILTKLQ-------------------------------------IVTNSGRASTLAATD 999
Query: 1145 AATPTLRRIERAAIAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLA 1204
AATP L+RIERAAIAAATPI+YHSRELLLLIHEHLQASGL + AA LLKEAQLTPLPSLA
Sbjct: 1000 AATPALKRIERAAIAAATPITYHSRELLLLIHEHLQASGLASAAAMLLKEAQLTPLPSLA 1059
Query: 1205 APSSLAHQISTQESPSIQIQWPSGRSP-GFLTGKSKLAARDEDISLKCDSSMSSKKKQLV 1263
A SSL+HQ STQE+PSIQI WPSGR+P GFL K K ++ SLKC++++SSKKK LV
Sbjct: 1060 AASSLSHQASTQETPSIQIHWPSGRTPCGFLYDKLKATGCSDNSSLKCEATVSSKKKSLV 1119
Query: 1264 FSPSFNLQSRHQSQSHDSQTPSSRKVFSNSKQS-AVPSVLEIPHESVSKSNPDTDSQSKT 1322
FSP+F QSR+QSQ DS+ +KV S+ KQS A P+ LE P ES+ KSNP+T+S KT
Sbjct: 1120 FSPTFGSQSRNQSQFIDSEQLPLKKVLSSLKQSTASPNPLEAPPESLQKSNPETESICKT 1179
Query: 1323 PIALPMKRKLSELKDTGLSLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGFSTPGS 1382
PI LPMKRKLS+LKD GL+ SGKR++TG+ GLRSP C TPN+ RK L+D GFSTP S
Sbjct: 1180 PILLPMKRKLSDLKDFGLASSGKRINTGEHGLRSPGCLTPNTARKIGSLSDAVGFSTPAS 1239
Query: 1383 -------------LAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQY 1429
LA+Y DDNQ G+Y Q G LND Q SNSER+TLDSLVVQY
Sbjct: 1240 GLRDIHGRSTPSTLADYADDNQYGSY--------MQSGPLNDNQSSNSERLTLDSLVVQY 1291
Query: 1430 LKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRR 1489
LKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREF+S Y GVH NRR
Sbjct: 1292 LKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFRSIYGGVHGNRR 1351
Query: 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS 1549
DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH ELKIFDSNS++ LESCTS
Sbjct: 1352 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHAGELKIFDSNSNNVLESCTS 1411
Query: 1550 HQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAA 1609
HQ+P+TLVQS++ GETQL+LSSSSQDV LW+ASSI+GGP+HS +GCKAA FSNSGN+FAA
Sbjct: 1412 HQSPLTLVQSYVCGETQLVLSSSSQDVRLWDASSISGGPIHSLDGCKAATFSNSGNVFAA 1471
Query: 1610 LPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRR 1669
L TE + R I+LYD+QT +E+ LSDT + TGRGH YS +HFSPSDTMLLWNG+LWDRR
Sbjct: 1472 LTTEQARREIMLYDVQTCHVESTLSDTVSSSTGRGHVYSLVHFSPSDTMLLWNGVLWDRR 1531
Query: 1670 NSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDV 1729
S PVHRFDQFTD+GGGGFHPAGNEVIINSEVWDLRKFRL RSVPSLDQT ITFNARGDV
Sbjct: 1532 QSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLFRSVPSLDQTVITFNARGDV 1591
Query: 1730 IYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSF 1789
IYAILRRNL+DVMSAVHTRRVKHPLFAAFRTVD+INYS+IAT PVDRCVLDFATE TDSF
Sbjct: 1592 IYAILRRNLDDVMSAVHTRRVKHPLFAAFRTVDSINYSEIATTPVDRCVLDFATEATDSF 1651
Query: 1790 VGLITMDDQEDMFSSARIYEIGRRRPT 1816
GLITMDDQE+MFSSAR+YEIGRRRPT
Sbjct: 1652 AGLITMDDQEEMFSSARVYEIGRRRPT 1678
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509964|ref|XP_003523712.1| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2414 bits (6255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1363/1897 (71%), Positives = 1544/1897 (81%), Gaps = 97/1897 (5%)
Query: 30 EDETKKVEEELMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSSN-NA 88
++E +EE++AK KLMEKITS+PDNPN +VLHAL+S+ E QES Y+EE+G SS+ A
Sbjct: 13 DEEEDSQKEEVIAKVNKLMEKITSAPDNPNATVLHALASILEAQESRYMEENGHSSSITA 72
Query: 89 RASHNIGRLGNLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEE 148
RA+H IGRLG L+REND+FFELISSKFL E+RYSTS+QAAA RL+L CSLTWIYPH FEE
Sbjct: 73 RAAHIIGRLGGLIRENDEFFELISSKFLLETRYSTSIQAAAGRLLLCCSLTWIYPHVFEE 132
Query: 149 PVVDNVKNWVMDETARLSCEDRHLKHHMSRKEA-SDSEMLKTYATGLLAVCLAGGGQVVE 207
V++N+KNWVMD+ L E+++LKH+ R++A SDSEMLKTY+TGLLAVCL G G +VE
Sbjct: 133 SVMENIKNWVMDDNTGLPAEEQNLKHNPDRRDAASDSEMLKTYSTGLLAVCLVGQGPIVE 192
Query: 208 DVLTSGLSAKLMRYLRIRVLGETS--QKDANHLAESKNSASATSLRGREEGRVRLRQILE 265
DVLTSGLSAKLMRYLRI VL ETS QKD H+ ES+++++ TS RGR++GR R RQ+LE
Sbjct: 193 DVLTSGLSAKLMRYLRISVLRETSGNQKDVTHITESRHASANTSGRGRDDGRGRFRQLLE 252
Query: 266 H---PDERTIDERSLDDQDIERVTHGDECGADDGEPHDGLAAGIDMSEAYTDAREGKTKL 322
D R IDERSLDD +ER G D DG + D R+G+ K
Sbjct: 253 SNHLDDTRMIDERSLDDVTLER-------GPDRSINSDG-----EDRWHCRDIRDGRIKY 300
Query: 323 GDNDETGRDDSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRDRSV 382
G++D+ RDDSSRRR NRGW RSRGKGR++EG +E+D L+SP SGSRLGQ RS+RDRS+
Sbjct: 301 GEHDDNIRDDSSRRRANRGWGRSRGKGRLSEGVVESDPILSSPGSGSRLGQGRSVRDRSI 360
Query: 383 SKSSDTKKAPDGRKHSGTIG---SDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAE 439
+++D ++ D +K G + ERED DDCFQECR+GSKDI+D+V+KAVRAAE
Sbjct: 361 LRNADIRRVTDSKKTLGRTTPSEASASASEREDNDDCFQECRIGSKDITDLVRKAVRAAE 420
Query: 440 AEARAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVE 499
AEAR+ANAP EA+KAAGDAAA++VK+AASEE+K+TNDE+AA LAASRAASTVIDAA AVE
Sbjct: 421 AEARSANAPEEAVKAAGDAAADLVKTAASEEYKSTNDEEAAFLAASRAASTVIDAASAVE 480
Query: 500 VSRNSISNNVDSVSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLG 559
+VS E ETNEDVEEYFIPD +SLAQLREKYCIQCLE LGEYVEVLG
Sbjct: 481 -------------NVSGKEMETNEDVEEYFIPDTQSLAQLREKYCIQCLELLGEYVEVLG 527
Query: 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKL 619
PVLHEKGVDVCLALLQ++SK+ E SKVA+LLPD+MKLICALAAHRKFAALFVDRGGMQKL
Sbjct: 528 PVLHEKGVDVCLALLQQNSKHWEASKVALLLPDIMKLICALAAHRKFAALFVDRGGMQKL 587
Query: 620 LAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNA 679
L VPR QTFFGLSSCLFTIGSLQGIMERVCALP+ VV ++VELA+QLL+C QDQARKNA
Sbjct: 588 LDVPRMPQTFFGLSSCLFTIGSLQGIMERVCALPSKVVERVVELALQLLDCNQDQARKNA 647
Query: 680 ALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPP 739
ALFFAAAFVFRA++DAFD+ DGLQKLLGLLNDAASVRSGVN+GA+ LS+S SLRNDRS
Sbjct: 648 ALFFAAAFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGVNSGALSLSNSGSLRNDRSSA 707
Query: 740 EVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDISN 799
EVLTSSEKQIAYHTCVALRQYFRAHLL+LVDSIRPNKSNRSA RNIP+VRA YKPLDISN
Sbjct: 708 EVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRAVYKPLDISN 767
Query: 800 EAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYA 859
EA+DAVFLQLQKDRKLGPA VRTRW AV++FL+ NGHIT+LELCQAPPVERYLHDLLQYA
Sbjct: 768 EAMDAVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHITMLELCQAPPVERYLHDLLQYA 827
Query: 860 LGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVC 919
LGVLHIVTLVP+SRKMIVN TLSNN GIAVILDAAN S++VDPEIIQPALNVL+NLVC
Sbjct: 828 LGVLHIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVC 887
Query: 920 PPPSISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDS 979
PPPSISNKP + AQGQQ S QTS
Sbjct: 888 PPPSISNKPAMFAQGQQFASSQTS------------------------------------ 911
Query: 980 SLLDRGSSA--NTQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR 1037
+DRGS+A +TQ ST QTPV + +SGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR
Sbjct: 912 --IDRGSAAGFSTQPVHSTPQTPVASASSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR 969
Query: 1038 EAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL 1097
E VR+NNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL
Sbjct: 970 EVVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL 1029
Query: 1098 SELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAA 1157
SELIRDSG T TEQGRWQAELSQ AIELI IVTNSGRASTLAATDAATPTLRRIERAA
Sbjct: 1030 SELIRDSGSLTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAA 1089
Query: 1158 IAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQE 1217
IAAATPISYHSRELLLLIHEHLQASGL TA+ LLKEAQLTPLPSL PSSLA Q TQE
Sbjct: 1090 IAAATPISYHSRELLLLIHEHLQASGLAQTASMLLKEAQLTPLPSLVPPSSLAQQPITQE 1149
Query: 1218 SPSIQIQWPSGRSP-GFLTGKSKLAARDEDISLKCDSSMSSKKKQLVFSPSFNLQSRHQS 1276
S QIQWPSGR+P GFLT + A+DED LK D S+S+KKK L FS SF+ +
Sbjct: 1150 VSSTQIQWPSGRAPSGFLTYRVMFNAKDEDAGLKSD-SVSAKKKSLTFSSSFH----SRL 1204
Query: 1277 QSHDSQTPSSRKVFSNSKQSAVPSVLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELK 1336
Q DSQ+ S+RK+ + K+S+ SV+E + S K N DT SQ KTPI LP KRKLS+LK
Sbjct: 1205 QLLDSQS-SARKLSNTGKESSETSVVETTYGSSVKHNIDTGSQFKTPITLPAKRKLSDLK 1263
Query: 1337 DTGL-SLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGFSTPG-------SLAEYLD 1388
D + S SGKRL+ GD GLRSP C + ++RKSSL D G TP + +D
Sbjct: 1264 DISMFSSSGKRLNIGDQGLRSPICSS--AIRKSSLQTDAVGLFTPTCNLKQSRCTIDLVD 1321
Query: 1389 DNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLS 1448
+NQ + + GQ TPS Q+ LND QP+N+ER+TLDSLVVQYLKHQHRQCPAPITTLPPLS
Sbjct: 1322 ENQSIS-NLGQMTPSSQV--LNDLQPNNAERVTLDSLVVQYLKHQHRQCPAPITTLPPLS 1378
Query: 1449 LLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDA 1508
LLHPHVCPEPKRSLDAPSNVTAR GTREFK Y GVH NRRDRQFVYSRF+PWRTCRDDA
Sbjct: 1379 LLHPHVCPEPKRSLDAPSNVTARFGTREFKYMYGGVHGNRRDRQFVYSRFKPWRTCRDDA 1438
Query: 1509 GALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL 1568
GALLTCITF+GDSSHIAVGSH ELK FDSN+S+ +ES T HQ+P+T VQS +SGETQLL
Sbjct: 1439 GALLTCITFVGDSSHIAVGSHNGELKFFDSNNSNVVESYTGHQSPLTHVQSFVSGETQLL 1498
Query: 1569 LSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628
LSSSSQDV LW+A+SI GGP HSFEGCKAARFSNSGN+FAAL +E++ R I LYDIQT
Sbjct: 1499 LSSSSQDVRLWDATSILGGPSHSFEGCKAARFSNSGNVFAALSSESARREIRLYDIQTCH 1558
Query: 1629 LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGF 1688
LE+ SDT TGRGH YS IHF+PSD+MLLWNG+LWDRR+S PVHRFDQFTD+GGGGF
Sbjct: 1559 LESNFSDTFAASTGRGHVYSLIHFNPSDSMLLWNGVLWDRRDSGPVHRFDQFTDYGGGGF 1618
Query: 1689 HPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTR 1748
HPAGNEVIINSEVWDLRKFRLLRSVPSLDQT+ITFNARGDV+YAILRRNLEDVMSAVHTR
Sbjct: 1619 HPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTR 1678
Query: 1749 RVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808
RVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFA E TDSFVGLITMDDQ++M++SARIY
Sbjct: 1679 RVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFAAEPTDSFVGLITMDDQDEMYASARIY 1738
Query: 1809 EIGRRRPT-EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDS 1867
EIGRRRPT +D D +E++++DDDD DVDPLL L GD S+ DD+SN D+D
Sbjct: 1739 EIGRRRPTDDDSDPDDAESEEEDEDDDDDDPDVDPLLSPGLGGDSGSDADDMSNDDDDSV 1798
Query: 1868 VSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDED 1904
+DE DGDF++DDVD+DGG G+LEIVTEGDE++D
Sbjct: 1799 SDLDEDE-DGDFILDDVDFDGGPGILEIVTEGDEEDD 1834
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437358|ref|XP_004136459.1| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2375 bits (6156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1300/1818 (71%), Positives = 1468/1818 (80%), Gaps = 104/1818 (5%)
Query: 40 LMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSSNNARASHNIGRLGN 99
L+A+A KLM+K+T+S DNPNP+ LHAL++L E QES Y+ E+G SS+N R SH+IGRLGN
Sbjct: 51 LIARAHKLMDKVTASYDNPNPTFLHALATLLETQESRYMAENGHSSSNGRGSHSIGRLGN 110
Query: 100 LVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDNVKNWVM 159
++REND+FFELISSKFLS++RYS+S+QAAAARL+LSCSLTW YPH FEE V++N+K WVM
Sbjct: 111 VLRENDEFFELISSKFLSDTRYSSSIQAAAARLLLSCSLTWTYPHVFEEDVLENIKKWVM 170
Query: 160 DETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVEDVLTSGLSAKLM 219
+E + S EDR+ K + K+ SDSEMLKTY+TGLLAVCLAGG Q+VEDV T+ LSAKLM
Sbjct: 171 EEAGKSSAEDRNWKPELGGKDVSDSEMLKTYSTGLLAVCLAGGSQLVEDVFTARLSAKLM 230
Query: 220 RYLRIRVLGETSQKDANHLAESKNSASATSLRGREEGRVRLRQILEHP---DERTIDERS 276
R+LRIRVLG+ SQKD NHL ++KN++SA+ ++ R+E RVR+RQ+LE D RT DERS
Sbjct: 231 RFLRIRVLGDVSQKDGNHLLDAKNASSASGIKVRDESRVRVRQVLETSHLDDSRTTDERS 290
Query: 277 LDDQ--------DIERVTHGDECGADDGEPHDGLAAGIDMSEAYT---------DAREGK 319
+DDQ + R+ ++C + P DGLA D E D R+G+
Sbjct: 291 VDDQVFDRDNERGLSRLAPPEQCWVGEEGP-DGLAPRSDGYEVDVEGEERWHGLDFRDGR 349
Query: 320 TKLGDNDETGRDDSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRD 379
TK GD D+ RDDS+RR+M+R RSRGKGR++EGA+E D LTSP+SG+R RS R+
Sbjct: 350 TKHGDIDDNARDDSTRRKMSR--SRSRGKGRVHEGALEIDHALTSPISGNR---GRSGRE 404
Query: 380 RSVSKSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAE 439
RS K+ D KK D + SG D +ER+D DDCFQ+CRVGSKDIS++VKKAV AAE
Sbjct: 405 RSSFKNLDVKKVSDASRTSGRTNCDISSVERDDNDDCFQDCRVGSKDISELVKKAVSAAE 464
Query: 440 AEARAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVE 499
AEARA APLEAIKAAGD+AAEVVKSAA EEFKT+NDE+AA LAAS+A +TVIDAA+AVE
Sbjct: 465 AEARAVGAPLEAIKAAGDSAAEVVKSAAFEEFKTSNDEEAAFLAASKAVTTVIDAANAVE 524
Query: 500 VSRNSISNNVDSVSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLG 559
NV S T E NE EE+ IP ESL QLREKYCIQCLE LGEYVEVLG
Sbjct: 525 ND-----ANVSSDDPGTTVKEMNEQTEEFSIPSFESLTQLREKYCIQCLEILGEYVEVLG 579
Query: 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKL 619
PVL EKGVDVCL LLQRSSK E S MLLP+VMKLICALAAHRKFAALFVDRGGMQKL
Sbjct: 580 PVLREKGVDVCLTLLQRSSKQSETSNTEMLLPEVMKLICALAAHRKFAALFVDRGGMQKL 639
Query: 620 LAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNA 679
LAVPR TFFGLSSCLFTIGSLQGIMERVCALP +VV+Q+VELAIQLLEC QDQA KNA
Sbjct: 640 LAVPRVTHTFFGLSSCLFTIGSLQGIMERVCALPPEVVYQVVELAIQLLECQQDQAIKNA 699
Query: 680 ALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAG-AVGLSSSTSLRNDRSP 738
ALFFAAAFVFRA++DAFDAQD LQKLLGLLNDAASVRSGVN+G A+GLS++ SLRNDRSP
Sbjct: 700 ALFFAAAFVFRAVLDAFDAQDSLQKLLGLLNDAASVRSGVNSGGALGLSNTGSLRNDRSP 759
Query: 739 PEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDIS 798
E LTSS KQIAYHTCVALRQYFRAHLLLLV+SIRPNKS+RSA RN + RAAYKPLDIS
Sbjct: 760 TEALTSSRKQIAYHTCVALRQYFRAHLLLLVESIRPNKSSRSAARNASSARAAYKPLDIS 819
Query: 799 NEAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQY 858
NEA+D V L LQKDRKLG A VRTRWPA ++FL+ NGHIT+LELCQAPPV+RYLHDLLQY
Sbjct: 820 NEAMDTVLLLLQKDRKLGAAFVRTRWPAAEKFLNCNGHITMLELCQAPPVDRYLHDLLQY 879
Query: 859 ALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLV 918
ALGVLHIVTLVPNSRKMIVNATLSNN G+AVILDAA+ S++V PEIIQPALNVLINLV
Sbjct: 880 ALGVLHIVTLVPNSRKMIVNATLSNNRVGVAVILDAASIASNFVVPEIIQPALNVLINLV 939
Query: 919 CPPPSISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVD 978
CPPPSISNKPP++ QG Q++S QTSN
Sbjct: 940 CPPPSISNKPPVVMQGSQAISSQTSN---------------------------------- 965
Query: 979 SSLLDRGSSANT-QLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR 1037
RG+++ T Q + SQ PV T TSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR
Sbjct: 966 -----RGNTSVTGQATSNNSQNPVAT-TSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR 1019
Query: 1038 EAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL 1097
E+VRANNGIKVLLHLLQPRIY PPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL
Sbjct: 1020 ESVRANNGIKVLLHLLQPRIYLPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL 1079
Query: 1098 SELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAA 1157
SELIRDSG Q TEQGRWQAELSQVAIELI+IVTNSGRAS LAA+DAATPTLRRIERAA
Sbjct: 1080 SELIRDSGSQISGTEQGRWQAELSQVAIELISIVTNSGRASALAASDAATPTLRRIERAA 1139
Query: 1158 IAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQE 1217
IAAATPI+YHSRELLLLIHEHL ASGL A LLKEA+LTPLP LAAPSSLA+Q S E
Sbjct: 1140 IAAATPITYHSRELLLLIHEHLLASGLSKAAYALLKEAELTPLPHLAAPSSLAYQASKLE 1199
Query: 1218 SPSIQIQWPSGRSP-GFLTGKSKLAARDEDISLKCDSSMSS-KKKQLVFSPSFNLQSRHQ 1275
+PS Q+QWP GRSP GFLT KSKL++R+ED S+KCD +MS +KK LVF+P F S+
Sbjct: 1200 TPSTQLQWPCGRSPCGFLTDKSKLSSREEDASMKCDYNMSCPRKKPLVFTP-FT-HSKSL 1257
Query: 1276 SQSHDSQTPSSRKVFSNSKQSAVPSVLEIPHESVSKSNP--DTDSQSKTPIALPMKRKLS 1333
+S +S + + RKV S SKQSA P S +++ P DT+SQ KTPI LPMKRKLS
Sbjct: 1258 PKSLESSSSAVRKVSSTSKQSAAPL-------SSNETTPSIDTESQCKTPIILPMKRKLS 1310
Query: 1334 ELKDTGLSLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGFSTP------------- 1380
ELKDTG LS KRLH+ + GLRSP CPTP S RKSSL+ D GFSTP
Sbjct: 1311 ELKDTGTVLSSKRLHSNESGLRSPICPTPISSRKSSLITD-VGFSTPSTTNMRDQLGRPA 1369
Query: 1381 --GSLAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCP 1438
G + LD+NQ G+ G TPS G LNDPQPSNSERITLDSLVVQYLKHQHRQCP
Sbjct: 1370 PGGFWTDCLDENQ-GSTQIGLVTPSSHPGNLNDPQPSNSERITLDSLVVQYLKHQHRQCP 1428
Query: 1439 APITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRF 1498
PITTLPPLSLL PHVCPEPKRSLDAP NVT+RLG+REF+S Y GVH NRRDRQFVYSRF
Sbjct: 1429 TPITTLPPLSLLQPHVCPEPKRSLDAPWNVTSRLGSREFRSIYGGVHGNRRDRQFVYSRF 1488
Query: 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558
RPWRTCRDDA ALLTC+TFLGDS IAVGSH+ E+KIFDSNSSS LESCTSHQ+P+T+++
Sbjct: 1489 RPWRTCRDDASALLTCLTFLGDS-RIAVGSHSGEVKIFDSNSSSILESCTSHQSPLTIME 1547
Query: 1559 SHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRG 1618
S S +TQL+LSSSS DV LW+ASSI+GGPMHSFEGCKAARFSN+GN+FAA+ +E + R
Sbjct: 1548 SFTSDDTQLVLSSSSLDVRLWDASSISGGPMHSFEGCKAARFSNAGNIFAAMASEPARRE 1607
Query: 1619 ILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFD 1678
ILLYDIQT QLE KLSDT+V+ GRGHAYS +HFSPSDTMLLWNG+LWDRR PVHRFD
Sbjct: 1608 ILLYDIQTCQLELKLSDTNVSSAGRGHAYSHVHFSPSDTMLLWNGVLWDRRGPGPVHRFD 1667
Query: 1679 QFTDHGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNL 1738
QFTD+GGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQT ITFNA GDVIYAILRRNL
Sbjct: 1668 QFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTAITFNASGDVIYAILRRNL 1727
Query: 1739 EDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQ 1798
EDVMSAVHTRRVKHPLFAAFRT+DA+NYSDIATIP+DRCVLDF TE+TDSFVGLITMDDQ
Sbjct: 1728 EDVMSAVHTRRVKHPLFAAFRTIDAVNYSDIATIPLDRCVLDFTTEKTDSFVGLITMDDQ 1787
Query: 1799 EDMFSSARIYEIGRRRPT 1816
++MFSSAR+YEIGRRRPT
Sbjct: 1788 DEMFSSARVYEIGRRRPT 1805
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505532|ref|XP_004162499.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor homolog 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2350 bits (6089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1289/1818 (70%), Positives = 1454/1818 (79%), Gaps = 124/1818 (6%)
Query: 40 LMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSSNNARASHNIGRLGN 99
L+A+A KLM+K+T+S DNPNP+ LHAL++L E QES Y+ E+G SS+N R SH+IGRLGN
Sbjct: 56 LIARAHKLMDKVTASYDNPNPTFLHALATLLETQESRYMAENGHSSSNGRGSHSIGRLGN 115
Query: 100 LVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDNVKNWVM 159
++REND+ FELISSKFLS++RYS+S+QAAAARL+LSCSLTW YPH FEE V++N+K WVM
Sbjct: 116 VLRENDEXFELISSKFLSDTRYSSSIQAAAARLLLSCSLTWTYPHVFEEDVLENIKKWVM 175
Query: 160 DETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVEDVLTSGLSAKLM 219
+E + S EDR+ K + K+ SDSEMLKTY+TGLLAVCLAGG Q+VEDV T+ LSAKLM
Sbjct: 176 EEAGKSSAEDRNWKPELGGKDVSDSEMLKTYSTGLLAVCLAGGSQLVEDVFTARLSAKLM 235
Query: 220 RYLRIRVLGETSQKDANHLAESKNSASATSLRGREEGRVRLRQILEHP---DERTIDERS 276
R+LRIRVLG+ SQKD NHL ++KN++SA+ ++ R+E RVR+RQ+LE D RT DERS
Sbjct: 236 RFLRIRVLGDVSQKDGNHLLDAKNASSASGIKVRDESRVRVRQVLETSHLDDSRTTDERS 295
Query: 277 LDDQ--------DIERVTHGDECGADDGEPHDGLAAGIDMSEAYT---------DAREGK 319
+DDQ + R+ ++C + P DGLA D E D R+G+
Sbjct: 296 VDDQVFDRDNERGLSRLAPPEQCWVGEEGP-DGLAPRSDGYEVDVEGEERWHGLDFRDGR 354
Query: 320 TKLGDNDETGRDDSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRD 379
TK GD D+ RDDS+RR+M+R RSRGKGR++EGA+E D LTSP+S S
Sbjct: 355 TKHGDIDDNARDDSTRRKMSR--SRSRGKGRVHEGALEIDHALTSPISVS---------- 402
Query: 380 RSVSKSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAE 439
D + SG D +ER+D DDCFQ+CRVGSKDIS++VKKAV AAE
Sbjct: 403 -------------DASRTSGRTNCDISSVERDDNDDCFQDCRVGSKDISELVKKAVSAAE 449
Query: 440 AEARAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVE 499
AEARA APLEAIKAAGD+AAEVVKSAA EEFKT+NDE+AA LAAS+A +TVIDAA+AVE
Sbjct: 450 AEARAVGAPLEAIKAAGDSAAEVVKSAAFEEFKTSNDEEAAFLAASKAVTTVIDAANAVE 509
Query: 500 VSRNSISNNVDSVSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLG 559
NV S T E NE EE+ IP ESL QLREKYCIQCLE LGEYVEVLG
Sbjct: 510 ND-----ANVSSDDPGTTVKEMNEQTEEFSIPSFESLTQLREKYCIQCLEILGEYVEVLG 564
Query: 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKL 619
PVL EKGVDVCL LLQRSSK E S MLLP+VMKLICALAAHRKFAALFVDRGGMQKL
Sbjct: 565 PVLREKGVDVCLTLLQRSSKQSETSNTEMLLPEVMKLICALAAHRKFAALFVDRGGMQKL 624
Query: 620 LAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNA 679
LAVPR TFFGLSSCLFTIGSLQGIMERVCALP +VV+Q+VELAIQLLEC QDQA KNA
Sbjct: 625 LAVPRVTHTFFGLSSCLFTIGSLQGIMERVCALPPEVVYQVVELAIQLLECQQDQAIKNA 684
Query: 680 ALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAG-AVGLSSSTSLRNDRSP 738
ALFFAAAFVFRA++DAFDAQD LQKLLGLLNDAASVRSGVN+G A+GLS++ SLRNDRSP
Sbjct: 685 ALFFAAAFVFRAVLDAFDAQDSLQKLLGLLNDAASVRSGVNSGGALGLSNTGSLRNDRSP 744
Query: 739 PEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDIS 798
E LTSS KQIAYHTCVALRQYFRAHLLLLV+SIRPNKS+RSA RN + RAAYKPLDIS
Sbjct: 745 TEALTSSRKQIAYHTCVALRQYFRAHLLLLVESIRPNKSSRSAARNASSARAAYKPLDIS 804
Query: 799 NEAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQY 858
NEA+D V L LQKDRKLG A VRTRWPA ++FL+ NGHIT+LELCQAPPV+RYLHDLLQY
Sbjct: 805 NEAMDTVLLLLQKDRKLGAAFVRTRWPAAEKFLNCNGHITMLELCQAPPVDRYLHDLLQY 864
Query: 859 ALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLV 918
ALGVLHIVTLVPNSRKMIVNATLSNN G+AVILDAA+ S++V PEIIQPALNVLINLV
Sbjct: 865 ALGVLHIVTLVPNSRKMIVNATLSNNRVGVAVILDAASIASNFVVPEIIQPALNVLINLV 924
Query: 919 CPPPSISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVD 978
CPPPSISNKPP++ QG Q++S QTSN
Sbjct: 925 CPPPSISNKPPVVMQGSQAISSQTSN---------------------------------- 950
Query: 979 SSLLDRGSSANT-QLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR 1037
RG+++ T Q + SQ PV T TSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR
Sbjct: 951 -----RGNTSVTGQATSNNSQNPVAT-TSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAR 1004
Query: 1038 EAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL 1097
E+VRANNGIKVLLHLLQPRIY PPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL
Sbjct: 1005 ESVRANNGIKVLLHLLQPRIYLPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKL 1064
Query: 1098 SELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAA 1157
SELIRDSG Q TEQGRWQAELSQVAIELI+IVTNSGRAS LAA+DAATPTLRRIERAA
Sbjct: 1065 SELIRDSGSQISGTEQGRWQAELSQVAIELISIVTNSGRASALAASDAATPTLRRIERAA 1124
Query: 1158 IAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQE 1217
IAAATPI+YHSRELLLLIHEHL ASGL A LLKEA+LTPLP LAAPSSLA+Q S E
Sbjct: 1125 IAAATPITYHSRELLLLIHEHLLASGLSKAAYALLKEAELTPLPHLAAPSSLAYQASKLE 1184
Query: 1218 SPSIQIQWPSGRSP-GFLTGKSKLAARDEDISLKCDSSMSS-KKKQLVFSPSFNLQSRHQ 1275
+PS Q+QWP GRSP GFLT KSKL++R+ED S+KCD +MS +KK LVF+P F S+
Sbjct: 1185 TPSTQLQWPCGRSPCGFLTDKSKLSSREEDASMKCDYNMSCPRKKPLVFTP-FT-HSKSL 1242
Query: 1276 SQSHDSQTPSSRKVFSNSKQSAVPSVLEIPHESVSKSNP--DTDSQSKTPIALPMKRKLS 1333
+S +S + + RKV S SKQSA P S +++ P DT+SQ KTPI LPMKRKLS
Sbjct: 1243 PKSLESSSSAVRKVSSTSKQSAAPL-------SSNETTPSIDTESQCKTPIILPMKRKLS 1295
Query: 1334 ELKDTGLSLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGFSTP------------- 1380
ELKDTG LS KRLH+ + GLRSP CPTP S RKSSL+ D GFSTP
Sbjct: 1296 ELKDTGTVLSSKRLHSNESGLRSPICPTPISSRKSSLITD-VGFSTPSTTNMRDQLGRPA 1354
Query: 1381 --GSLAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCP 1438
G + LD+NQ G+ G TPS G LNDPQPSNSERITLDSLVVQYLKHQHRQCP
Sbjct: 1355 PGGFWTDCLDENQ-GSTQIGLVTPSSHPGNLNDPQPSNSERITLDSLVVQYLKHQHRQCP 1413
Query: 1439 APITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRF 1498
PITTLPPLSLL PHVCPEPKRSLDAP NVT+RLG+REF+S Y GVH NRRDRQFVYSRF
Sbjct: 1414 TPITTLPPLSLLQPHVCPEPKRSLDAPWNVTSRLGSREFRSIYGGVHGNRRDRQFVYSRF 1473
Query: 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558
RPWRTCRDDA ALLTC+TFLGDS IAVGSH+ E+KIFDSNSSS LESCTSHQ+P+T+++
Sbjct: 1474 RPWRTCRDDASALLTCLTFLGDS-RIAVGSHSGEVKIFDSNSSSILESCTSHQSPLTIME 1532
Query: 1559 SHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRG 1618
S S +TQL+LSSSS DV LW+ASSI+GGPMHSFEGCKAARFSN+GN+FAA+ +E + R
Sbjct: 1533 SFTSDDTQLVLSSSSLDVRLWDASSISGGPMHSFEGCKAARFSNAGNIFAAMASEPARRE 1592
Query: 1619 ILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFD 1678
ILLYDIQT QLE KLSDT+V+ GRGHAYS +HFSPSDTMLLWNG+LWDRR PVHRFD
Sbjct: 1593 ILLYDIQTCQLELKLSDTNVSSAGRGHAYSHVHFSPSDTMLLWNGVLWDRRGPGPVHRFD 1652
Query: 1679 QFTDHGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNL 1738
QFTD+GGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQT ITFNA GDVIYAILRRNL
Sbjct: 1653 QFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTAITFNASGDVIYAILRRNL 1712
Query: 1739 EDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQ 1798
EDVMSAVHTRRVKHPLFAAFRT+DA+NYSDIATIP+DRCVLDF TE+TDSFVGLITMDDQ
Sbjct: 1713 EDVMSAVHTRRVKHPLFAAFRTIDAVNYSDIATIPLDRCVLDFTTEKTDSFVGLITMDDQ 1772
Query: 1799 EDMFSSARIYEIGRRRPT 1816
++MFSSAR+YEIGRRRPT
Sbjct: 1773 DEMFSSARVYEIGRRRPT 1790
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081815|emb|CBI20820.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2266 bits (5872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1274/1806 (70%), Positives = 1420/1806 (78%), Gaps = 204/1806 (11%)
Query: 30 EDETKKVEEELMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSS-NNA 88
++E ++ L +K QKLMEKITSSPDNPNPSVLHALSS+ E QES Y+EE+G SS NN
Sbjct: 27 QEEDSGDDDSLQSKVQKLMEKITSSPDNPNPSVLHALSSILETQESRYMEETGHSSLNNG 86
Query: 89 RASHNIGRLGNLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEE 148
RA+H IGRLG+LVR+NDDFFELISSKFLSESRYS SVQAAAARL+L CSLT +YPH FEE
Sbjct: 87 RATHIIGRLGSLVRDNDDFFELISSKFLSESRYSISVQAAAARLLLICSLTLVYPHVFEE 146
Query: 149 PVV-DNVKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVE 207
VV +N+KNWVMDE AR S EDR K+ RKEASDSEML+TY+TGLLA+CLAGGGQVVE
Sbjct: 147 TVVLENIKNWVMDENARFSGEDRSWKNDSGRKEASDSEMLRTYSTGLLALCLAGGGQVVE 206
Query: 208 DVLTSGLSAKLMRYLRIRVLGET--SQKDANHLAESKNSASATSLRGREEGRVRLRQILE 265
DVLTSGLSAKLMRYLR RVLGET SQKD +H+AESKN+ AT +RGR+EGR RLR +LE
Sbjct: 207 DVLTSGLSAKLMRYLRTRVLGETNTSQKDGSHIAESKNTPGATCMRGRDEGRSRLRLVLE 266
Query: 266 --HPDE-RTIDERSLDDQDIERVTHGDECGADDGEPHDGLAAGIDMSEAYTDAREGKTKL 322
H D+ R IDE SL DQ +ER
Sbjct: 267 TNHLDDPRIIDEGSLHDQSVER-------------------------------------- 288
Query: 323 GDNDETGRDDSSRRRMNRGWIRS----RGKGRINEGAIETDQGLTSPVSGSRLGQVRSIR 378
D+D + GW +GKGR+NEGAIE + LTSP SGSRLGQ RSIR
Sbjct: 289 -DHDRS-----------IGWQTHGEELKGKGRVNEGAIENEHALTSPGSGSRLGQGRSIR 336
Query: 379 DRSVSKSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAA 438
DRS+S++ DTK+APD +K G +DG MERED DD FQEC+VGSKDISD+VKKAV++A
Sbjct: 337 DRSLSRNLDTKRAPDAKKCFGRTIADGFPMEREDNDDRFQECKVGSKDISDLVKKAVKSA 396
Query: 439 EAEARAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAV 498
EAEA+ ANAPLEAIKAAGDAAAEVVKSAA EEFKTTNDE+AA+LAAS+AASTVIDAA+A+
Sbjct: 397 EAEAKEANAPLEAIKAAGDAAAEVVKSAALEEFKTTNDEEAAILAASKAASTVIDAANAI 456
Query: 499 EVSRNSISNNVDSVSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVL 558
EVSR+S + N D ++ TETE NE+VEE+FI D +SLAQLREKYCIQCLE LGEYVEVL
Sbjct: 457 EVSRSSSNMNADPMNSRGTETEINEEVEEFFIMDADSLAQLREKYCIQCLEILGEYVEVL 516
Query: 559 GPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQK 618
GPVLHEKGVDVCLALLQRSSK +E SK+AMLLPDV+KLICALAAHRKFAA+FVDRGGMQK
Sbjct: 517 GPVLHEKGVDVCLALLQRSSKLKEASKLAMLLPDVLKLICALAAHRKFAAVFVDRGGMQK 576
Query: 619 LLAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKN 678
LLAVPR TFFGLSSCLFTIGSLQGIMERVCALP++VVHQ+VELA+QLLEC+QDQARKN
Sbjct: 577 LLAVPRVALTFFGLSSCLFTIGSLQGIMERVCALPSEVVHQVVELALQLLECSQDQARKN 636
Query: 679 AALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSP 738
AALFFAAAFVFRA++D+FDAQDGLQKLL LL+DAASVRSGVN+G +GLS+S SLRNDRSP
Sbjct: 637 AALFFAAAFVFRAVLDSFDAQDGLQKLLSLLHDAASVRSGVNSGGLGLSNSGSLRNDRSP 696
Query: 739 PEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDIS 798
PEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNK+NRSA RN+P+VRAAYKPLD+S
Sbjct: 697 PEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKNNRSAARNLPSVRAAYKPLDLS 756
Query: 799 NEAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQY 858
NEA+DAVFLQLQKDRKLGPA VR RW AVD+FL+ NGHIT+LELCQAPPVERYLHDLLQY
Sbjct: 757 NEAMDAVFLQLQKDRKLGPAFVRARWLAVDKFLTSNGHITMLELCQAPPVERYLHDLLQY 816
Query: 859 ALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLV 918
ALGVLHIVTLVP SRK+IVN TLSNN GIAVILDAAN +S+VDPEIIQPALNVL+NLV
Sbjct: 817 ALGVLHIVTLVPYSRKLIVNVTLSNNRVGIAVILDAANG-ASFVDPEIIQPALNVLVNLV 875
Query: 919 CPPPSISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVD 978
CPPPSIS KPP+LAQGQQS S QTSN
Sbjct: 876 CPPPSISLKPPVLAQGQQSASVQTSN---------------------------------- 901
Query: 979 SSLLDRGSSANTQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQARE 1038
DRGSSA +L VGDRRISLGAGAGCAGLAAQLEQGYRQARE
Sbjct: 902 ----DRGSSAVLRL----------------VGDRRISLGAGAGCAGLAAQLEQGYRQARE 941
Query: 1039 AVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLS 1098
AVRAN+GIKVLLHLLQPRI SPPA LDCLRALACRVLLGLARDD IAHILTKLQVGKKLS
Sbjct: 942 AVRANSGIKVLLHLLQPRIVSPPATLDCLRALACRVLLGLARDDAIAHILTKLQVGKKLS 1001
Query: 1099 ELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAAI 1158
ELIRDSG QT EQGRWQAEL+QVAIELI IVTNSGRASTLAATDAATPTLRRIERAAI
Sbjct: 1002 ELIRDSGSQTSGNEQGRWQAELAQVAIELIGIVTNSGRASTLAATDAATPTLRRIERAAI 1061
Query: 1159 AAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQES 1218
AAATPI+YHSRELLLLIHEHLQASGL TTAAQLLKEAQLTPLPSLAAPSSL HQ S+QE+
Sbjct: 1062 AAATPITYHSRELLLLIHEHLQASGLSTTAAQLLKEAQLTPLPSLAAPSSLVHQASSQET 1121
Query: 1219 PSIQIQWPSGR-SPGFLTGKSKLAARDEDISLKCDSSMSSKKKQ-LVFSPSFNLQSRHQS 1276
PS+Q+QWPSGR + GFL+ K K +DED L DSS+SS KK+ LVFS + + Q R+Q
Sbjct: 1122 PSMQLQWPSGRIAGGFLSNKLKPTTKDEDSCLNSDSSVSSSKKKPLVFSSTLSFQFRNQP 1181
Query: 1277 QSHDSQTPSSRKVFSNSKQSAVP-SVLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSEL 1335
QSHD+Q+P+ KVFS SK+S+ P SV E P + SK N D +SQ KTPI LPMKRKL+EL
Sbjct: 1182 QSHDAQSPAISKVFSTSKKSSAPASVPETPSVTTSKPNLDAESQYKTPIILPMKRKLTEL 1241
Query: 1336 KDTGLSLSGKRLHTGDLGLRSPSC----PTPNSVRKSSLLNDPQGFSTPGSLAEYLDDNQ 1391
KD GL+ S KRL+T +LGL SP PTP+SV L + LDDNQ
Sbjct: 1242 KDVGLASSVKRLNTSELGLHSPVYQYGRPTPSSV-----------------LTDNLDDNQ 1284
Query: 1392 CGNYHAGQATPS-FQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLL 1450
CG H GQ TPS FQLG+LNDP N+ER+TLDSLVVQYLKHQHRQCPAPITTLPPLSLL
Sbjct: 1285 CGIPHLGQMTPSSFQLGSLNDPHTGNTERLTLDSLVVQYLKHQHRQCPAPITTLPPLSLL 1344
Query: 1451 HPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGA 1510
HPH+CPEP+RSLDAPSNVTARL TREF++ + G+H NRRDRQF+YSRFRPWRTCRDD
Sbjct: 1345 HPHICPEPRRSLDAPSNVTARLSTREFRNVHGGIHGNRRDRQFIYSRFRPWRTCRDDGNG 1404
Query: 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570
LLT + FLGDS+ IA GSH+ ELK FD NSS+ LES T HQ P+TLVQ
Sbjct: 1405 LLTSLAFLGDSAQIAAGSHSGELKFFDCNSSTMLESFTGHQYPLTLVQ------------ 1452
Query: 1571 SSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE 1630
H F+GCKAARFSNSG +FAAL +E+S R IL+
Sbjct: 1453 -------------------HPFDGCKAARFSNSGTIFAALSSESSRREILV--------- 1484
Query: 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHP 1690
PSDTMLLWNG+LWDRR S PVHRFDQFTD+GGGGFHP
Sbjct: 1485 -----------------------PSDTMLLWNGVLWDRRGSGPVHRFDQFTDYGGGGFHP 1521
Query: 1691 AGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRV 1750
AGNEVIINSEVWDLRKFRLLR+VPSLDQT ITFN+RGDVIYAILRRNLED+MSAVH+RR
Sbjct: 1522 AGNEVIINSEVWDLRKFRLLRTVPSLDQTVITFNSRGDVIYAILRRNLEDIMSAVHSRRA 1581
Query: 1751 KHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810
KHPLF+AFRTVDA+NYSDIATI VDRCVLDFATE TDSFVGL++MDD ++MFSSAR+YEI
Sbjct: 1582 KHPLFSAFRTVDAVNYSDIATITVDRCVLDFATEPTDSFVGLVSMDDHDEMFSSARMYEI 1641
Query: 1811 GRRRPT 1816
GRRRPT
Sbjct: 1642 GRRRPT 1647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802916|ref|XP_002869342.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297315178|gb|EFH45601.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1973 bits (5111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1116/1840 (60%), Positives = 1346/1840 (73%), Gaps = 201/1840 (10%)
Query: 40 LMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSSNNARASHNIGRLGN 99
L+AKAQKLM+ ITS +NPNP+ LHALS L E QESL+LEE+G SN AR SH+ G+L
Sbjct: 55 LIAKAQKLMDDITSVANNPNPNFLHALSHLLESQESLFLEENGHFSN-ARGSHSSGKLCT 113
Query: 100 LVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDNVKNWVM 159
L+REND+FFELISS FLSE+ YST+V+AA+ARL+++CSLTW+YPH F++ V +N KNWVM
Sbjct: 114 LIRENDEFFELISSTFLSENSYSTAVKAASARLLMNCSLTWMYPHVFDDAVTENFKNWVM 173
Query: 160 DETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVEDVLTSGLSAKLM 219
+E + ED RKEASDSEMLKTY+TGLLA+ LA GQ+VEDVLTSGLSAKLM
Sbjct: 174 EEAVKFPGEDS------GRKEASDSEMLKTYSTGLLALSLASRGQIVEDVLTSGLSAKLM 227
Query: 220 RYLRIRVLGE--TSQKDANHLAESKNSASATSLRGREEGRVRLRQILEHPDERTIDERSL 277
YLR+RV+GE TS++DA H E+K+ SL+ +EEGR R+R++++ ++
Sbjct: 228 HYLRVRVIGEPSTSRRDALHTTETKH----VSLKTKEEGRSRVRKVVD----------TV 273
Query: 278 DDQDIERVTHGDECGADDGEPHDGLAAGIDMSEAY--TDAREGKTKLGDNDETGRDDSSR 335
+ + G E G D + DG ID E + + + K K GD D +GRDD SR
Sbjct: 274 EGDHVFETDSGREMGQTDVQ-SDG-EFEIDGREIFNVSGVVDCKIKPGD-DNSGRDDPSR 330
Query: 336 RRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRDRSVSKSSDTKKAPDGR 395
R+NR +SRG+GR+NEGA +T+ L SP SG + +RD+ +SK SD + D
Sbjct: 331 HRLNRS--KSRGRGRVNEGATDTEVLLASPRSGRPV-----VRDKDLSKFSDGRNGEDVT 383
Query: 396 KHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAEAEARAANAPLEAIKAA 455
G + S + +ERED D+CFQ C +G+K+I D+VK+AV AAE EARAA+AP +A KAA
Sbjct: 384 ICLGKMKSGIMEIEREDDDECFQGCIIGTKNIIDLVKRAVGAAETEARAAHAPDDAAKAA 443
Query: 456 GDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVEVSRNSISNNVDSVSVS 515
GDAAAE+VK+AA EEFK++ E+AA+ AA+RAA TVIDAA EVSRN
Sbjct: 444 GDAAAELVKTAALEEFKSSGSEEAAVSAATRAAITVIDAA---EVSRNP---------TC 491
Query: 516 VTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQ 575
VT +T DV E +PD+ESLAQL+EKYCIQCLE LGEYVEVLGPVLHEKGVDVC+ LL+
Sbjct: 492 VTSDQTT-DVSEVSLPDIESLAQLQEKYCIQCLEILGEYVEVLGPVLHEKGVDVCIMLLE 550
Query: 576 RSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFGLSSC 635
R+S+ ++ S V+ LLPDVMKLICALAAHRKFAA+FVDRGG+QKLLAVPR ++TF+GLSSC
Sbjct: 551 RTSQCDDSSTVSPLLPDVMKLICALAAHRKFAAMFVDRGGIQKLLAVPRVSETFYGLSSC 610
Query: 636 LFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVFRAIIDA 695
L+TIGSLQGIMERVCALP+D++HQ+V+LAI+LL+C+QDQARKN+ALFFAAAFVFRAI+DA
Sbjct: 611 LYTIGSLQGIMERVCALPSDLIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDA 670
Query: 696 FDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCV 755
FDA D LQKLL +L DAASVR+G N+ DRS PEV+TSSEKQ+A+HTC
Sbjct: 671 FDAHDSLQKLLAILKDAASVRTGANS-------------DRSAPEVMTSSEKQMAFHTCF 717
Query: 756 ALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKL 815
ALRQYFRAHLLLLVDSIRP++S+R RN+PN+RAAYKPLDISNEA+DA+F QLQKDRKL
Sbjct: 718 ALRQYFRAHLLLLVDSIRPSRSSRGGVRNVPNIRAAYKPLDISNEAVDAIFHQLQKDRKL 777
Query: 816 GPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVLHIVTLVPNSRKM 875
GP VRT+WPAV+ FL+ +GH+T+LELCQ PPV+RYLHDLLQYA GVLHIVT +P+ RK
Sbjct: 778 GPTFVRTQWPAVNNFLASSGHVTMLELCQTPPVDRYLHDLLQYAFGVLHIVTSIPDGRKA 837
Query: 876 IVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPSISNKPPLLAQGQ 935
I +ATLSNN GIAVILDAAN +S VDPEIIQPALNVLINLVCPPPS+SNKPP LAQ
Sbjct: 838 IAHATLSNNRAGIAVILDAANISNSIVDPEIIQPALNVLINLVCPPPSLSNKPP-LAQNH 896
Query: 936 QSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDRGSSANTQLACS 995
Q V GQ + PS + + TQ +
Sbjct: 897 QPVPGQATTRPSTD------------------------------------VAVGTQSTGN 920
Query: 996 TSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVLLHLLQP 1055
QTPV +SGLVGDRRI LGAG G AGLAA+LEQ YRQAREAVR N+GIK+LL LLQP
Sbjct: 921 APQTPVAPASSGLVGDRRIFLGAGTGSAGLAAKLEQVYRQAREAVRGNDGIKILLKLLQP 980
Query: 1056 RIY-SPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGGQTPATEQG 1114
RIY +PPA DCLRALACRVLLGLARDDTIA ILTKL+
Sbjct: 981 RIYVNPPATPDCLRALACRVLLGLARDDTIAQILTKLE---------------------- 1018
Query: 1115 RWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAAIAAATPISYHSRELLLL 1174
IVTNSG A+TL A+DAATPTLRRIERAAIAAATPI+Y S+ELLLL
Sbjct: 1019 ---------------IVTNSGHATTLTASDAATPTLRRIERAAIAAATPITYDSKELLLL 1063
Query: 1175 IHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQE--SPSIQIQWPSGRS-P 1231
IHEHLQASGL TA+ LLKEAQLTPLPSLA+PSS+A+ STQE +P Q QWPSGR+
Sbjct: 1064 IHEHLQASGLGETASALLKEAQLTPLPSLASPSSIAYS-STQEMSTPLAQEQWPSGRANS 1122
Query: 1232 GFLTGKSKLAARDEDISLKCDSSMSSKKKQLV-----------------------FSP-- 1266
GF T K K+ A DED + +C++++S+KKK L F P
Sbjct: 1123 GFFTSKPKVCAHDEDPNSRCNAAISAKKKHLASSTLEIPTPVAQQQWPSGRANSGFFPSI 1182
Query: 1267 -----------------------------SFNLQSRHQSQSHDSQTPSSRKVFSNSKQS- 1296
SF+LQSR QS SHD+Q S++++ S+S
Sbjct: 1183 PRINALDEDPSSRGNAAPSAKKKQLTFSPSFSLQSRKQSFSHDAQPQSTQRINSSSNSDP 1242
Query: 1297 AVPSVLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELKDTGLSLSGKRLHTGDLGLRS 1356
A E E V K++ D D+Q KTPI+ P KRKLSEL+D LS+ GKR++ G+LGLRS
Sbjct: 1243 AWADTSETAAELVLKNDLDADAQFKTPISFPRKRKLSELRDPELSVPGKRINLGELGLRS 1302
Query: 1357 PSCPTPNSVRKSSLLNDPQGFSTPGSLAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSN 1416
P+CPT +S+R++S + + G TP S LD NQ G+ GQ TP+ QL +DPQPSN
Sbjct: 1303 PACPTTSSLRRNSTIAESSGLQTPAS---ALDANQSGSSRLGQMTPASQLRLPSDPQPSN 1359
Query: 1417 SERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTRE 1476
ER++LDSLVVQYLKHQHRQC APITTLPP+SLLHPHVCPEPKR L+AP N+T RLGTRE
Sbjct: 1360 PERLSLDSLVVQYLKHQHRQCLAPITTLPPVSLLHPHVCPEPKRLLEAPLNITGRLGTRE 1419
Query: 1477 FKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIF 1536
+S YSGVH NRRDRQFV+SRF+ WR+ RD+ AL TCI LG ++H+AVGSH E+KIF
Sbjct: 1420 LQSFYSGVHGNRRDRQFVFSRFKSWRSFRDET-ALFTCIALLGGTNHLAVGSHAGEIKIF 1478
Query: 1537 DSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCK 1596
+++S + LES + HQAPVTLVQ ++SG+TQLLLSSSS DV LW+ASSI GGP HSF+GCK
Sbjct: 1479 EASSGTLLESFSGHQAPVTLVQPYVSGDTQLLLSSSSSDVQLWDASSITGGPRHSFDGCK 1538
Query: 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656
AA+FSNSG FAAL E S + +LLYD+QT KL+DT + R + YS +HFSP D
Sbjct: 1539 AAKFSNSGLQFAALSCEASTKDVLLYDVQTCSPCDKLTDTVT--SSRSNPYSLVHFSPCD 1596
Query: 1657 TMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSL 1716
T++LWNG+LWDRR V RFDQFTD+GGGGFHP+ NEVIINSEVWD+R F+LLRSVPSL
Sbjct: 1597 TLILWNGVLWDRRIPESVSRFDQFTDYGGGGFHPSRNEVIINSEVWDMRNFKLLRSVPSL 1656
Query: 1717 DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR 1776
DQT ITFN+RGDVIYA+LRRN+EDVMSAVHTRRVKHPLFAAFRT+DAINYSDIATIPVDR
Sbjct: 1657 DQTAITFNSRGDVIYAMLRRNIEDVMSAVHTRRVKHPLFAAFRTLDAINYSDIATIPVDR 1716
Query: 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPT 1816
C+LDFATE TDSF+GLITM+DQEDMFSSAR+YEIGRRRPT
Sbjct: 1717 CLLDFATEPTDSFLGLITMEDQEDMFSSARMYEIGRRRPT 1756
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240256109|ref|NP_194845.4| DDB1- and CUL4-associated factor-1 [Arabidopsis thaliana] gi|290463428|sp|Q9M086.2|DCAF1_ARATH RecName: Full=DDB1- and CUL4-associated factor homolog 1; AltName: Full=Protein DDB1-CUL4 ASSOCIATED FACTOR 1; Short=Protein DCAF1 gi|332660467|gb|AEE85867.1| DDB1- and CUL4-associated factor-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1971 bits (5105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1124/1846 (60%), Positives = 1350/1846 (73%), Gaps = 181/1846 (9%)
Query: 34 KKVEEELMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSSNNARASHN 93
+ VE+EL+AKAQKLME ITS +NPNP++LHALS L E QESL+LEE+G SN AR SHN
Sbjct: 44 QSVEDELIAKAQKLMEDITSVANNPNPNILHALSQLLESQESLFLEENGHFSN-ARGSHN 102
Query: 94 IGRLGNLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDN 153
G+L L+REND+FFELISS FLSE+ YST+V+AA+ARL+++CSLTW+YPH F++ V +N
Sbjct: 103 SGKLCILIRENDEFFELISSTFLSENSYSTAVKAASARLLMNCSLTWMYPHVFDDAVTEN 162
Query: 154 VKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVEDVLTSG 213
KNWVM+E + ED ++KEASD EMLKTY+TGLLA+ LA GQ+VEDVLTSG
Sbjct: 163 FKNWVMEEAVKFPGEDS------AKKEASDFEMLKTYSTGLLALSLASRGQIVEDVLTSG 216
Query: 214 LSAKLMRYLRIRVLGETSQKDANHLAESKNSASATSLRGREEGRVRLRQILEHPDERTID 273
LSAKLM YLR+RVL E S H E+K+ SL+ +EEGR R+R+I++
Sbjct: 217 LSAKLMHYLRVRVLKEPSTSRI-HTTETKH----VSLKTKEEGRSRVRKIVD-------- 263
Query: 274 ERSLDDQDIERVTHGDECGADDGEPHDGLAAGIDMSEAY--TDAREGKTKLGDNDETGRD 331
+++ + G E G D +P DG ID + + + + K K GD D + RD
Sbjct: 264 --TVEGDHVLETDSGREMGQTDVQP-DG-EFEIDGRDVFNVSGVVDCKIKPGD-DNSVRD 318
Query: 332 DSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRDRSVSKSSDTKKA 391
D SR R+NR +SRG+GR++EGA +T+ L SP RLG++ +RDR +SK SD + A
Sbjct: 319 DPSRHRLNRS--KSRGRGRVHEGAPDTEVLLASP----RLGRLL-VRDRDLSKISDGRNA 371
Query: 392 PDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAEAEARAANAPLEA 451
D G + S + +ERED D+CFQ C +G+K+I+D+VK+AV AAE EARAA+AP +A
Sbjct: 372 EDVTVCLGKMKSGIMEIEREDNDECFQGCIIGTKNITDLVKRAVGAAETEARAAHAPDDA 431
Query: 452 IKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVEVSRNSISNNVDS 511
KAAGDAAAE+VK+AA EEFK++ E+AA+ AA+RAA TVIDAA EVSRN
Sbjct: 432 AKAAGDAAAELVKTAALEEFKSSGSEEAAVSAATRAAITVIDAA---EVSRNP------- 481
Query: 512 VSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLHEKGVDVCL 571
VT +T DV E +PD+ESLAQL+EKYCIQCLE LGEYVEVLGPVLHEKGVDVC+
Sbjct: 482 --TCVTSDQTT-DVSEVSLPDIESLAQLQEKYCIQCLEILGEYVEVLGPVLHEKGVDVCI 538
Query: 572 ALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFG 631
LL+R+S+ ++ S V+ LLPDVMKLICALAAHRKFAA+FV+R G+ KLLAVPR ++TF+G
Sbjct: 539 VLLERTSQLDDRSTVSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYG 598
Query: 632 LSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVFRA 691
LSSCL+TIGSLQGIMERVCALP V+HQ+V+LAI+LL+C+QDQARKN+ALFFAAAFVFRA
Sbjct: 599 LSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRA 658
Query: 692 IIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAY 751
I+DAFDAQD LQKLL +L DAASVR+G N DRS PEV+TSSEKQ+A+
Sbjct: 659 ILDAFDAQDSLQKLLAILKDAASVRTGAN-------------TDRSAPEVMTSSEKQMAF 705
Query: 752 HTCVALRQYFRAHLLLLVDSIRPNKSNRSA--GRNIPNVRAAYKPLDISNEAIDAVFLQL 809
HTC ALRQYFRAHLLLLVDSIRP++ +R PN+RAAYKPLDISNEA+DA+FLQL
Sbjct: 706 HTCFALRQYFRAHLLLLVDSIRPSRISRGGVPSSMKPNIRAAYKPLDISNEAVDAIFLQL 765
Query: 810 QKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVLHIVTLV 869
QKDR+LGP V+ +WPAV+ FL+ +GH+T+LELCQ PPV+RYLHDLLQYA GVLHIVT +
Sbjct: 766 QKDRRLGPTFVKAQWPAVNNFLASSGHVTMLELCQTPPVDRYLHDLLQYAFGVLHIVTSI 825
Query: 870 PNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPSISNKPP 929
P+ RK I +ATLSNN GIAVILDAAN +S VDPEIIQPALNVLINLVCPPPS+SNKPP
Sbjct: 826 PDGRKAIAHATLSNNRAGIAVILDAANISNSIVDPEIIQPALNVLINLVCPPPSLSNKPP 885
Query: 930 LLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDRGSSAN 989
L AQ Q V GQ + PS + +
Sbjct: 886 L-AQNHQPVPGQATTRPSTD------------------------------------VAVG 908
Query: 990 TQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVL 1049
TQ + QTPV +SGLVGDRRI LGAG G AGLAA+LEQ YRQAREAVR N+GIK+L
Sbjct: 909 TQSTGNAPQTPVAPASSGLVGDRRIFLGAGTGSAGLAAKLEQVYRQAREAVRGNDGIKIL 968
Query: 1050 LHLLQPRIY-SPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGGQT 1108
L LLQPRIY +PPA DCLRALACRVLLGLARDDTIA ILTKL+VGK LSELIRDSGGQ+
Sbjct: 969 LKLLQPRIYVNPPATPDCLRALACRVLLGLARDDTIAQILTKLEVGKSLSELIRDSGGQS 1028
Query: 1109 PATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAAIAAATPISYHS 1168
T+QGRWQAEL+QVA+ELI IVTNSG A+TL A+DAATPTLRRIERAAIAAATPI+Y S
Sbjct: 1029 SGTDQGRWQAELAQVALELIGIVTNSGHATTLTASDAATPTLRRIERAAIAAATPITYDS 1088
Query: 1169 RELLLLIHEHLQASGLVTTAAQLLKEAQLTPL---------------------------- 1200
+ELLLLIHEHLQASGL TA+ LLKEAQLTPL
Sbjct: 1089 KELLLLIHEHLQASGLGDTASALLKEAQLTPLPSSASPSSIAYSTTQEMSTPLAQEQWPS 1148
Query: 1201 -----------PSLAA----PSS------------LAHQISTQESPSIQIQWPSGRSP-G 1232
P + A P+S LA +P Q QWPSGR+ G
Sbjct: 1149 GRANSGFFTSKPKVCAHDEDPNSRSNAALSAKKKHLASSTLEMPTPVAQQQWPSGRANCG 1208
Query: 1233 FLTGKSKLAARDEDISLKCDSSMSSKKKQLVFSPSFNLQSRHQSQSHDSQTPSSRKV--F 1290
F K+ ARDED S + +++ S+KKKQL FSPSF+ QSR QS SHD+ S++++
Sbjct: 1209 FCPSIPKINARDEDPSSRGNAAPSAKKKQLTFSPSFSSQSRKQSFSHDALPQSTQRINCC 1268
Query: 1291 SNSKQSAVPSVLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELKDTGLSLSGKRLHTG 1350
SNS A+ E E V K++ D D+Q KTPI+ P KRKLSEL+D+ S+ GKR+ G
Sbjct: 1269 SNS-DPALADTSETAAELVLKNDLDADAQFKTPISFPRKRKLSELRDS--SVPGKRIDLG 1325
Query: 1351 DLGLRSPSCPTPNSVRKSSLLNDPQGFSTPGSLAEYLDDNQCGNYHAGQATPSFQLGALN 1410
+ R++S D G TP S LD NQ G+ GQ TP+ QL +
Sbjct: 1326 E--------------RRNSTFADGSGLQTPAS---ALDANQSGSSRLGQMTPASQLRLPS 1368
Query: 1411 DPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTA 1470
DPQPSN ER++LDSLVVQYLKHQHRQC APITTLPP+SLLHPHVCPEPKR L+AP N+T
Sbjct: 1369 DPQPSNPERLSLDSLVVQYLKHQHRQCLAPITTLPPVSLLHPHVCPEPKRLLEAPLNMTG 1428
Query: 1471 RLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHT 1530
RLGTRE +S YSGVH NRRDRQFV+SRF+ WR+ RD+ AL TCI LG ++HIAVGSH
Sbjct: 1429 RLGTRELQSFYSGVHGNRRDRQFVFSRFKSWRSFRDET-ALFTCIALLGGTNHIAVGSHA 1487
Query: 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH 1590
E+KIF+++S S LES + HQAPVTLVQ ++S +TQLLLSSSS DV LW+ASSI GGP H
Sbjct: 1488 GEIKIFEASSGSMLESVSGHQAPVTLVQPYVSRDTQLLLSSSSSDVQLWDASSITGGPRH 1547
Query: 1591 SFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650
SF+GCKAA+FSNSG FAAL E S + +LLYD+QT KL+DT + R + YS +
Sbjct: 1548 SFDGCKAAKFSNSGLQFAALSCEASRKDVLLYDVQTCSPCQKLTDTVT--SSRSNPYSLV 1605
Query: 1651 HFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFRLL 1710
HFSP DT++LWNG+LWDRR V RFDQFTD+GGGGFHP+ NEVIINSE+WD+R F+LL
Sbjct: 1606 HFSPCDTLILWNGVLWDRRIPEKVRRFDQFTDYGGGGFHPSRNEVIINSEIWDMRTFKLL 1665
Query: 1711 RSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA 1770
RSVPSLDQT ITFN+RGDVIYA+LRRN+EDVMSAVHTRRVKHPLFAAFRT+DAINYSDIA
Sbjct: 1666 RSVPSLDQTAITFNSRGDVIYAMLRRNIEDVMSAVHTRRVKHPLFAAFRTLDAINYSDIA 1725
Query: 1771 TIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPT 1816
TIPVDRC+LDFATE TDSF+GLITM+DQEDMFSSAR+YEIGRRRPT
Sbjct: 1726 TIPVDRCLLDFATEPTDSFLGLITMEDQEDMFSSARMYEIGRRRPT 1771
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1922 | ||||||
| TAIR|locus:2126296 | 1883 | DCAF1 "AT4G31160" [Arabidopsis | 0.306 | 0.313 | 0.545 | 0.0 | |
| UNIPROTKB|Q9Y4B6 | 1507 | VPRBP "Protein VPRBP" [Homo sa | 0.199 | 0.254 | 0.335 | 2.5e-78 | |
| MGI|MGI:2445220 | 1506 | Vprbp "Vpr (HIV-1) binding pro | 0.199 | 0.254 | 0.335 | 6.7e-78 | |
| RGD|1305176 | 1512 | Vprbp "Vpr (HIV-1) binding pro | 0.199 | 0.253 | 0.330 | 8.7e-76 | |
| FB|FBgn0034641 | 1544 | mahj "mahjong" [Drosophila mel | 0.199 | 0.248 | 0.286 | 7.5e-60 | |
| WB|WBGene00014243 | 1701 | dcaf-1 [Caenorhabditis elegans | 0.258 | 0.292 | 0.262 | 2.2e-44 | |
| TAIR|locus:2051094 | 525 | MAC3B "MOS4-associated complex | 0.101 | 0.371 | 0.257 | 0.00064 | |
| RGD|1565004 | 324 | Poc1a "POC1 centriolar protein | 0.105 | 0.626 | 0.255 | 0.00077 |
| TAIR|locus:2126296 DCAF1 "AT4G31160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1595 (566.5 bits), Expect = 0., Sum P(5) = 0.
Identities = 341/625 (54%), Positives = 417/625 (66%)
Query: 329 GRDDSSRRRMNRGWI-RSRGKGRINEGAIETDQGLTSPVSGS-RLGQVRSIRDRSVSKSS 386
G D+S R +R + RS+ +GR G + T + S RLG++ +RDR +SK S
Sbjct: 311 GDDNSVRDDPSRHRLNRSKSRGR---GRVHEGAPDTEVLLASPRLGRLL-VRDRDLSKIS 366
Query: 387 DTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMXXXXXXXXXXXXXXXN 446
D + A D G + S + +ERED D+CFQ C +G+K+I+D+ +
Sbjct: 367 DGRNAEDVTVCLGKMKSGIMEIEREDNDECFQGCIIGTKNITDLVKRAVGAAETEARAAH 426
Query: 447 APLXXXXXXXXXXXXXXXXXXXXXFKTTNDEDXXXXXXXXXXXTVIDAADAVEVSRXXXX 506
AP FK++ E+ TVIDAA EVSR
Sbjct: 427 APDDAAKAAGDAAAELVKTAALEEFKSSGSEEAAVSAATRAAITVIDAA---EVSRNPTC 483
Query: 507 XXXXXXXXXXXXXXXXXXXXXYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLHEKG 566
+PD+ESLAQL+EKYCIQCLE LGEYVEVLGPVLHEKG
Sbjct: 484 VTSDQTTDVSEVS----------LPDIESLAQLQEKYCIQCLEILGEYVEVLGPVLHEKG 533
Query: 567 VDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNN 626
VDVC+ LL+R+S+ ++ S V+ LLPDVMKLICALAAHRKFAA+FV+R G+ KLLAVPR +
Sbjct: 534 VDVCIVLLERTSQLDDRSTVSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS 593
Query: 627 QTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNXXXXXXXX 686
+TF+GLSSCL+TIGSLQGIMERVCALP V+HQ+V+LAI+LL+C+QDQARKN
Sbjct: 594 ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAA 653
Query: 687 XXXXXXXXXXXXQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSE 746
QD LQKLL +L DAASVR+G N DRS PEV+TSSE
Sbjct: 654 FVFRAILDAFDAQDSLQKLLAILKDAASVRTGANT-------------DRSAPEVMTSSE 700
Query: 747 KQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNI--PNVRAAYKPLDISNEAIDA 804
KQ+A+HTC ALRQYFRAHLLLLVDSIRP++ +R + PN+RAAYKPLDISNEA+DA
Sbjct: 701 KQMAFHTCFALRQYFRAHLLLLVDSIRPSRISRGGVPSSMKPNIRAAYKPLDISNEAVDA 760
Query: 805 VFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVLH 864
+FLQLQKDR+LGP V+ +WPAV+ FL+ +GH+T+LELCQ PPV+RYLHDLLQYA GVLH
Sbjct: 761 IFLQLQKDRRLGPTFVKAQWPAVNNFLASSGHVTMLELCQTPPVDRYLHDLLQYAFGVLH 820
Query: 865 IVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPSI 924
IVT +P+ RK I +ATLSNN GIAVILDAAN +S VDPEIIQPALNVLINLVCPPPS+
Sbjct: 821 IVTSIPDGRKAIAHATLSNNRAGIAVILDAANISNSIVDPEIIQPALNVLINLVCPPPSL 880
Query: 925 SNKPPLLAQGQQSVSGQTSNGPSME 949
SNKPPL AQ Q V GQ + PS +
Sbjct: 881 SNKPPL-AQNHQPVPGQATTRPSTD 904
|
|
| UNIPROTKB|Q9Y4B6 VPRBP "Protein VPRBP" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 2.5e-78, Sum P(5) = 2.5e-78
Identities = 135/402 (33%), Positives = 203/402 (50%)
Query: 1421 TLDSLVVQYLKHQHRQCPAXXXXXXXXXXXXXXVCPEPKRSLDAPSNVTARLGTREFKST 1480
TLDS++ +YL+ QH +C CPEPK+ AP N T+RL R
Sbjct: 1003 TLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPK 1062
Query: 1481 YSGVHRNRRDRQFVYSRFRP---WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFD 1537
Y GV DR ++SRFRP +R +D TC F + +G+ T +LK+++
Sbjct: 1063 YGGVDGGCFDRHLIFSRFRPISVFREANEDESGF-TCCAFSARERFLMLGTCTGQLKLYN 1121
Query: 1538 SNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGCK 1596
S S H + +T ++ G L ++ SQ + LW S+ HSF
Sbjct: 1122 VFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFD-MKHSFTEDH 1180
Query: 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656
FS + T+ I YDIQT L + + + + F+P+D
Sbjct: 1181 YVEFSKHSQ-DRVIGTKGDIAHI--YDIQTGNKLLTLFNPDL---ANNYKRNCATFNPTD 1234
Query: 1657 TMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSL 1716
++L +G+LWD R++ +H+FD+F + G FHP G EVIIN+E+WDLR F LL +VP+L
Sbjct: 1235 DLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPAL 1294
Query: 1717 DQTTITFNARGDVIY-AILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD 1775
DQ + FN G V+Y A+L+ + ED + R+K P ++FRT +A +Y IATI V
Sbjct: 1295 DQCRVVFNHTGTVMYGAMLQADDEDDLME---ERMKSPFGSSFRTFNATDYKPIATIDVK 1351
Query: 1776 RCVLDFATERTDSFVGLITMDDQED---MFSSARIYEIGRRR 1814
R + D T+ D ++ +I D M + R+YE+GR+R
Sbjct: 1352 RNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQR 1393
|
|
| MGI|MGI:2445220 Vprbp "Vpr (HIV-1) binding protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 6.7e-78, Sum P(5) = 6.7e-78
Identities = 135/402 (33%), Positives = 203/402 (50%)
Query: 1421 TLDSLVVQYLKHQHRQCPAXXXXXXXXXXXXXXVCPEPKRSLDAPSNVTARLGTREFKST 1480
TLDS++ +YL+ QH +C CPEPK+ AP N T+RL R
Sbjct: 1002 TLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPK 1061
Query: 1481 YSGVHRNRRDRQFVYSRFRP---WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFD 1537
Y GV DR ++SRFRP +R +D TC F + +G+ T +LK+++
Sbjct: 1062 YGGVDGGCFDRHLIFSRFRPISVFREANEDESGF-TCCAFSARERFLMLGTCTGQLKLYN 1120
Query: 1538 SNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGCK 1596
S S H + +T ++ G L ++ SQ + LW S+ HSF
Sbjct: 1121 VFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFD-MKHSFTEDH 1179
Query: 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656
FS + T+ I YDIQT L + + + + F+P+D
Sbjct: 1180 YVEFSKHSQ-DRVIGTKGDIAHI--YDIQTGNKLLTLFNPDL---ANNYKRNCATFNPTD 1233
Query: 1657 TMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSL 1716
++L +G+LWD R++ +H+FD+F + G FHP G EVIIN+E+WDLR F LL +VP+L
Sbjct: 1234 DLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPAL 1293
Query: 1717 DQTTITFNARGDVIY-AILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD 1775
DQ + FN G V+Y A+L+ + ED + R+K P ++FRT +A +Y IATI V
Sbjct: 1294 DQCRVVFNHTGTVMYGAMLQADDEDDLLE---ERMKSPFGSSFRTFNATDYKPIATIDVK 1350
Query: 1776 RCVLDFATERTDSFVGLITMDDQED---MFSSARIYEIGRRR 1814
R + D T+ D ++ +I D M + R+YE+GR+R
Sbjct: 1351 RNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQR 1392
|
|
| RGD|1305176 Vprbp "Vpr (HIV-1) binding protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 8.7e-76, Sum P(5) = 8.7e-76
Identities = 135/408 (33%), Positives = 203/408 (49%)
Query: 1421 TLDSLVVQYLKHQHRQCPAXXXXXXXXXXXXXXVCPEPKRSLDAPSNVTARLGTREFKST 1480
TLDS++ +YL+ QH +C CPEPK+ AP N T+RL R
Sbjct: 1002 TLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPK 1061
Query: 1481 YSGVHRNRRDRQFVYSRFRP---WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFD 1537
Y GV DR ++SRFRP +R +D TC F + +G+ T +LK+++
Sbjct: 1062 YGGVDGGCFDRHLIFSRFRPISVFREANEDESGF-TCCAFSARERFLMLGTCTGQLKLYN 1120
Query: 1538 SNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGCK 1596
S S H + +T ++ G L ++ SQ + LW S+ HSF
Sbjct: 1121 VFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFD-MKHSFTEDH 1179
Query: 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656
FS + T+ I YDIQT L + + + + F+P+D
Sbjct: 1180 YVEFSKHSQ-DRVIGTKGDIAHI--YDIQTGNKLLTLFNPDL---ANNYKRNCATFNPTD 1233
Query: 1657 TMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSL 1716
++L +G+LWD R++ +H+FD+F + G FHP G EVIIN+E+WDLR F LL +VP+L
Sbjct: 1234 DLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPAL 1293
Query: 1717 DQTTITFNARGDVIY-AILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI------ 1769
DQ + FN G V+Y A+L+ + ED + R+K P ++FRT +A +Y I
Sbjct: 1294 DQCRVVFNHTGTVMYGAMLQADDEDDLLE---ERMKSPFGSSFRTFNATDYKPIVMFYFS 1350
Query: 1770 ATIPVDRCVLDFATERTDSFVGLITMDDQED---MFSSARIYEIGRRR 1814
ATI V R + D T+ D ++ +I D M + R+YE+GR+R
Sbjct: 1351 ATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQR 1398
|
|
| FB|FBgn0034641 mahj "mahjong" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 7.5e-60, Sum P(5) = 7.5e-60
Identities = 120/419 (28%), Positives = 193/419 (46%)
Query: 1406 LGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAXXXXXXXXXXXXXXVCPEPKRSLDAP 1465
+G D Q + +RITL+++V +YL +QH C CP+PK S
Sbjct: 1054 VGLAEDGQ-LHPKRITLNTIVTEYLTNQHSLCNNPVTTCPQFDLYEPHKCPDPKPSRLLS 1112
Query: 1466 SNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRD-DAGAL-LTCITFLGDSSH 1523
SN L +R + T +G + +R DR++V++ F PWR+ R D L TC G +
Sbjct: 1113 SNYN--LTSRHAR-TQAGFNTSRFDRRYVHTHFSPWRSIRSADYEDLEFTCCDLAG--KY 1167
Query: 1524 IAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS---SQDVHLWN 1580
I VG+ + ++F+ N H V ++++ +G+ L+++SS + LW
Sbjct: 1168 IIVGTQQGDGRVFNMNDGVEQFFSNCHNFSVDAIKANRAGD--LVITSSFWRTPTSILW- 1224
Query: 1581 ASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640
SIA + T + L+DI T A + T NL
Sbjct: 1225 --SIADDEFKLKLRLPDVTYCEFSQTVQDRLLGTQNECATLFDINTGSKVASFTPTIPNL 1282
Query: 1641 TGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE 1700
+ A +D ++L +G+LWD R+ +H+FD+F G FHP E+I N+E
Sbjct: 1283 YTKNRAT----LCRTDELILSDGVLWDVRSGKEIHKFDKFNQCISGVFHPNCLEIIANTE 1338
Query: 1701 VWDLRKFRLLRSVPSLDQTTITFNARGDVIY-AILRRNLEDVMSAVHTRRVKHPLFAAFR 1759
VWDLR F LL++VP LDQ TF+ VIY A L + + M +F
Sbjct: 1339 VWDLRTFHLLQTVPVLDQRNCTFSPM-HVIYGASLGADRDHDMETT-------TYDTSFN 1390
Query: 1760 TVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT----MDDQEDMFSSARIYEIGRRR 1814
+DA +YS IATI V R + D + S + ++ + +++ + +IY +G ++
Sbjct: 1391 VLDAYDYSSIATIDVKRNINDLSVSANGSLIAVVEDYSGYESKQETY--VKIYAVGVKK 1447
|
|
| WB|WBGene00014243 dcaf-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 2.2e-44, Sum P(5) = 2.2e-44
Identities = 143/544 (26%), Positives = 245/544 (45%)
Query: 1293 SKQSAVPSVLEIPHESVSKSNPDTDSQSKTPIA---LPMK-RKLSELKDTGLSLSGKRLH 1348
SK +V ++L+ E+ P + S + TPI LP S++ DT +L+ + L
Sbjct: 866 SKLDSVAAMLK--SEAKLPDRPASRSIN-TPILNKPLPSSGNNFSKINDTYPTLAPRTLE 922
Query: 1349 T--GDLGLRSPS----CPTPNSVRKSSLLNDPQGFSTPGSLAEYLDDNQCGNYHAG-QAT 1401
+ G + R PS +P +S +D F+TP Y G + +
Sbjct: 923 SEIGGISARRPSNAASLSSPAMATRSHSTDDDV-FATPTLPRRYTTS---GAFPKKLMIS 978
Query: 1402 PSFQ-LGALNDPQPSNSERIT--LDSLVVQYLKHQHRQCPAXXXXXXXXXXXXXXVCPEP 1458
P+ Q L L + S+ R L+S+V Y ++QH C CPE
Sbjct: 979 PARQKLRPLTPGESSSGYRPIKDLNSIVTDYFRNQHSTCKNPVTTCPPFSLFYQHKCPEL 1038
Query: 1459 KRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFL 1518
+ N++ R +E + V+ + + ++SRFR W+T D + T TF
Sbjct: 1039 SYQTNVVRNISLRTLDQELLRPHERVYSQWTNERTIFSRFRNWKTIHDHDESY-TKATFS 1097
Query: 1519 GDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH- 1577
D H+ VG E+ + ++ H + +T ++ G L S+ S+ +
Sbjct: 1098 VDDEHLIVGLFNGEVHWINVDTGLDEGHTNCHGSALTNIEPSKDGSMMLTSSAFSRPLSA 1157
Query: 1578 LWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDT 1636
LW A +H++ +F+N+ + + T D+ + YD +T + L+ LS
Sbjct: 1158 LWRLGE-ALQRVHTYREDSCVKFANT-TMQRIVGT-CRDKATV-YDTETNHVLDTYLS-- 1211
Query: 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNGILWD-RRNSVPVHRFDQFTDHG-GGGFHPAGNE 1694
+ G + + FSP D ++ +G+LWD R+ + +H FD+ + G FHP G +
Sbjct: 1212 --GIDGLQYEKNYASFSPDDKLIFNDGLLWDVRKKNSAIHVFDRLSKITLFGTFHPHGTQ 1269
Query: 1695 VIINSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPL 1754
++INSEV+D+R FR+L VP L++ ++FN+ G+++YA + DV H +
Sbjct: 1270 IVINSEVYDIRTFRMLHHVPELNRCQVSFNSTGNIMYAT---EVTDV----HCPDYDEKI 1322
Query: 1755 FAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT-----MDDQEDMFSSA-RIY 1808
F++FRT + +YS + T R V+D D + +I M D S+ +I
Sbjct: 1323 FSSFRTFETRDYSALTTFEGRRPVIDLCASHQDQKMCVIEKVRPQMSDYMIQASTQLKIV 1382
Query: 1809 EIGR 1812
EIGR
Sbjct: 1383 EIGR 1386
|
|
| TAIR|locus:2051094 MAC3B "MOS4-associated complex 3B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 0.00064, P = 0.00064
Identities = 58/225 (25%), Positives = 96/225 (42%)
Query: 1524 IAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS-QDVHLW--- 1579
IA G +FD S L + T H VT V+ G++ L+L++S+ + V +W
Sbjct: 237 IATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVK--FVGDSDLVLTASADKTVRIWRNP 294
Query: 1580 -NASSIAGGPM--HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636
+ + G + HS E +A + F + + D YD+ + A++SD
Sbjct: 295 GDGNYACGYTLNDHSAE-VRAVTVHPTNKYFVSA---SLDGTWCFYDLSSGSCLAQVSDD 350
Query: 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNGI------LWDRRNSVPVHRFDQFTDHGGG-GFH 1689
S N+ Y+ F P D ++L G +WD ++ V +FD T F
Sbjct: 351 SKNVD-----YTAAAFHP-DGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFS 404
Query: 1690 PAGNEVIINSE----VWDLRKFRLLRSVPSLDQTTITFNARGDVI 1730
G + +E +WDLRK R +S S D ++ F+ G +
Sbjct: 405 ENGYFLATAAEDGVRLWDLRKLRNFKSFLSADANSVEFDPSGSYL 449
|
|
| RGD|1565004 Poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 0.00077, P = 0.00077
Identities = 61/239 (25%), Positives = 105/239 (43%)
Query: 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571
+TC+ F ++ H+A GS L I+ S T H+ VT V SG LL+S
Sbjct: 22 VTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGH---LLAS 78
Query: 1572 SSQD--VHLWNASSIAGGPM----HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625
S+D V +W ++ G H+ ++ F + G L L T + D+ + ++
Sbjct: 79 GSRDKTVRIW-VPNVKGESTVFRAHTAT-VRSVHFCSDGQL---LVTASDDKTVKVWSTH 133
Query: 1626 TYQLEAKLSDTSVNLTGRGHAYS---QIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTD 1682
+ L+ +N R +S ++ S SD + LWD+ + VH + +
Sbjct: 134 RQRFLFSLTQ-HINWV-RCAKFSPDGRLIVSASDDKTVK---LWDKTSRECVH---SYCE 185
Query: 1683 HGGG----GFHPAGNEVII----NS-EVWDLRKFRLLR--SVPSLDQTTITFNARGDVI 1730
HGG FHP+G + N+ +VWD R RL++ + S ++F+ G+ +
Sbjct: 186 HGGFVTYVDFHPSGTCIAAAGMDNTVKVWDTRTHRLVQHYQLHSAAVNALSFHPSGNYL 244
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1922 1615 0.00083 125 3 11 22 0.42 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 627 (67 KB)
Total size of DFA: 605 KB (2270 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 134.99u 0.16s 135.15t Elapsed: 00:00:12
Total cpu time: 135.00u 0.16s 135.16t Elapsed: 00:00:12
Start: Fri May 10 06:41:04 2013 End: Fri May 10 06:41:16 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M086 | DCAF1_ARATH | No assigned EC number | 0.6088 | 0.8662 | 0.8842 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1922 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-14 | |
| pfam09538 | 104 | pfam09538, FYDLN_acid, Protein of unknown function | 2e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-07 | |
| pfam09538 | 104 | pfam09538, FYDLN_acid, Protein of unknown function | 1e-06 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 1e-05 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 5e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-04 | |
| COG3343 | 175 | COG3343, RpoE, DNA-directed RNA polymerase, delta | 1e-04 | |
| TIGR02300 | 129 | TIGR02300, FYDLN_acid, TIGR02300 family protein | 1e-04 | |
| pfam05285 | 317 | pfam05285, SDA1, SDA1 | 2e-04 | |
| pfam10446 | 449 | pfam10446, DUF2457, Protein of unknown function (D | 2e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 3e-04 | |
| pfam07093 | 557 | pfam07093, SGT1, SGT1 protein | 6e-04 | |
| pfam04889 | 241 | pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont | 0.001 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.001 | |
| COG5137 | 279 | COG5137, COG5137, Histone chaperone involved in ge | 0.001 | |
| pfam10446 | 449 | pfam10446, DUF2457, Protein of unknown function (D | 0.002 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.002 | |
| COG4530 | 129 | COG4530, COG4530, Uncharacterized protein conserve | 0.002 | |
| COG4530 | 129 | COG4530, COG4530, Uncharacterized protein conserve | 0.002 | |
| pfam09073 | 424 | pfam09073, BUD22, BUD22 | 0.002 | |
| pfam09073 | 424 | pfam09073, BUD22, BUD22 | 0.002 | |
| COG3343 | 175 | COG3343, RpoE, DNA-directed RNA polymerase, delta | 0.003 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.003 | |
| pfam04006 | 613 | pfam04006, Mpp10, Mpp10 protein | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 4e-14
Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 34/218 (15%)
Query: 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS 1572
TC+ F D +A GS +K++D + L + H PV V + G T L SS
Sbjct: 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSS 71
Query: 1573 SQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628
+ + LW+ + G + + G + FS G + ++ + D+ I ++D++T +
Sbjct: 72 DKTIRLWDLET--GECVRTLTGHTSYVSSVAFSPDGRILSSS---SRDKTIKVWDVETGK 126
Query: 1629 LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL---WNG--ILWDRRNSVPVHRFDQFTDH 1683
L G + + FSP T + +G LWD R V T H
Sbjct: 127 CLT-------TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT---LTGH 176
Query: 1684 GGGG----FHPAGNEVIINSE-----VWDLRKFRLLRS 1712
G F P G +++ +S +WDL + L +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214
|
Length = 289 |
| >gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 1809 EIGRRRPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSV 1868
E+ + R D++ + ++E++EDD +D D D D + DDL D DD
Sbjct: 39 EVAKSRAPAADAEDAAKKDEDEEDEDDVVLD---------DDDDDDDDDDL--PDLDDDD 87
Query: 1869 SDLDDEDDGDFMMDDVD 1885
DLDD+DD DF+ DD D
Sbjct: 88 VDLDDDDD-DFLEDDDD 103
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS 1572
+ F D + S +K++D ++ L + H+ V V G LL+S
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG---YLLASG 237
Query: 1573 SQD--VHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYD 1623
S+D + +W+ + G + + G + +S G A+ ++D I ++D
Sbjct: 238 SEDGTIRVWDLRT--GECVQTLSGHTNSVTSLAWSPDGKRLASG---SADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 1813 RRPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLD 1872
R P D D + DEEDE+D D D D D D + DL D+DD D
Sbjct: 44 RAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDL---DDDDDDFLED 100
Query: 1873 DEDD 1876
D+D+
Sbjct: 101 DDDE 104
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-05
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 1791 GLITMDDQEDMFSSARIYEIGRRRPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDG 1850
+ DD +D F G + ED+ + +D DE++E+DDD D
Sbjct: 295 SKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDD------------DL 342
Query: 1851 DGDSEGDDLSNSDEDDSVSDLDDEDDGD 1878
+ + E DLS+ +ED+ D DDEDD +
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDDEDDEE 370
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-05
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 1829 EEDEEDDDDVDVDPLLGADLDGDGDSEGDD---LSNSDEDDSVSDLDDEDDGDFMMDDVD 1885
+EEDD++ + DLD + + + DD L +ED+ + +D+ + DD D
Sbjct: 283 RGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDD-D 341
Query: 1886 YDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918
+ +++ E +EDE+ + + +EE+
Sbjct: 342 LEEEEEDVDLSDE-EEDEEDEDSDDEDDEEEEE 373
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (111), Expect = 6e-05
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 28/226 (12%)
Query: 1513 TCITFLGDSSHIAVGSHTKE-LKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571
T + F D +A GS +K++D + PL + H PV+ + G + S
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218
Query: 1572 SSQDVHLWNASS--IAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629
S + LW+ S+ + + + FS G+L A + +SD I L+D+++
Sbjct: 219 SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA---SGSSDGTIRLWDLRS--- 272
Query: 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG 1684
S L+G + + FSP +L LWD + H
Sbjct: 273 ---SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHE 328
Query: 1685 GG----GFHPAGNEVIINSE------VWDLRKFRLLRSVPSLDQTT 1720
G F P G+ ++ +WDLR + L+++
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.6 bits (109), Expect = 1e-04
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 33/246 (13%)
Query: 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTLVQSHLSGETQL 1567
+T I F D + GS +K++D ++ L H + V+ + +
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125
Query: 1568 LLSSSSQD--VHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILL 1621
LL+SSS D V LW+ S G + + EG + FS G L A+ + D I L
Sbjct: 126 LLASSSLDGTVKLWD-LSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS--GSSLDGTIKL 182
Query: 1622 YDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL----WNG--ILWDRRNSVPVH 1675
+D++T + + L+ + ++ + FSP +L+ +G LWD +
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSS-------LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235
Query: 1676 -RFDQFTDHGGGGFHPAGNEVIINSE-----VWDLR-KFRLLRSVPSLDQ--TTITFNAR 1726
+D F P G+ + S +WDLR LLR++ ++ F+
Sbjct: 236 STLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 1727 GDVIYA 1732
G ++ +
Sbjct: 296 GKLLAS 301
|
Length = 466 |
| >gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 1817 EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDD 1876
ED+ D D+ D+E+EEDD+ +D D + D D + D++ +D D +DEDD
Sbjct: 115 EDELDYDE---DKEEEEDDEVDSLD-----DENDDEDEDDDEIVEILIEDDEVD-EDEDD 165
Query: 1877 GDFMMDDVD 1885
+ D+ D
Sbjct: 166 DEDEEDEED 174
|
Length = 175 |
| >gnl|CDD|131353 TIGR02300, FYDLN_acid, TIGR02300 family protein | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1818 DDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDG 1877
+ DP+ E+ E ++ D +VDP GA GD +D +D+DD V+ L+DE+D
Sbjct: 59 KEVDPEIDEAAELVSLEEADEEVDP--GAPTPAGGDDLAEDEDIADDDDDVTFLEDEEDD 116
Query: 1878 DFMMDDV 1884
D +D+
Sbjct: 117 DIDDEDI 123
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 129 |
| >gnl|CDD|218538 pfam05285, SDA1, SDA1 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 1805 ARIYEIGRRRPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLS-NSD 1863
+ E R++ + D + DEE+E + ++ D D D EG+ + SD
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEE-----------DEDSDDEGEWIDVESD 124
Query: 1864 EDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918
++ SD +DE ++ D + E E+++ + E + E++
Sbjct: 125 KEIESSDSEDE-------EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
|
This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317 |
| >gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 1817 EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDD 1876
+++ D DD + DE+D++DDDD D + D DS DD + +D + +D DDE D
Sbjct: 56 DEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNEAGFADSDDESD 115
|
This is a family of uncharacterized proteins. Length = 449 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-04
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 1811 GRRRPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSD 1870
RR + D D E D D++DD+D + DL +SD+D S D
Sbjct: 237 KRRTIAQIDGIDSDDEGDGSDDDDDED----------------AIESDLDDSDDDVSDED 280
Query: 1871 LDDEDDGDFMM 1881
+D D D +M
Sbjct: 281 GEDLFDTDNVM 291
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|219293 pfam07093, SGT1, SGT1 protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-04
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 1797 DQEDMFSSAR------IYEIGRRRPTE-DDSDPDDAESDEEDEEDDDDVDVDPL------ 1843
D+++ F + EI P + DD+D DD E D+EDE+ D ++ L
Sbjct: 458 DEDEFFEFLKNMLGLKDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQ 517
Query: 1844 LGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYD 1887
+ A+L S D+SNS + +D+DD ++ VD D
Sbjct: 518 MDAELKQTDSSNNADISNSGSSGA----EDDDDDIEGVEPVDID 557
|
This family consists of several eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known to suppress GCR2 and is highly expressed in the muscle and heart. The function of this family is unknown although it has been speculated that SGT1 may be functionally analogous to the Gcr2p protein of Saccharomyces cerevisiae which is known to be a regulatory factor of glycolytic gene expression. Length = 557 |
| >gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 1820 SDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDD 1876
++ D + +ED++++D++ + + D D + DD D D ED+
Sbjct: 87 TNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDE 143
|
This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 1814 RPTEDDSDPDDAESDEEDE-EDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLD 1872
DD ++ + + D D D DLD D + DD + DEDD D+D
Sbjct: 107 EKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVD 166
Query: 1873 DEDDGDFMMDDVDYDGGGGLLEIVTEGDEDED 1904
DED+ + + + + V + D+ E
Sbjct: 167 DEDEEK--KEAKELEKLSDDDDFVWDEDDSEA 196
|
Length = 509 |
| >gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 1815 PTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDE 1874
P + D D ++ E EE + +++ D + +G+D G+G+ E L+ +E+++ D E
Sbjct: 169 PAQPDVDNEEEERLEESDGREEEEDEE--VGSDSYGEGNRE---LNEEEEEEAEGSDDGE 223
Query: 1875 DDGDFMMDDVDYDGGGGLLE----IVTEGDEDEDSQLVESLSSGDEE 1917
D D+ + +D G I E E+ E + +EE
Sbjct: 224 DVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEE 270
|
Length = 279 |
| >gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 1793 ITMDDQEDMFSSARIYEIGRRRPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDG 1852
+T++D M I ++G+ E + DD E D++D++D+D + D D
Sbjct: 26 LTLNDT--MKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDED----------EDDDDD 73
Query: 1853 DSEGDDLSNSDEDDSVSDLDDEDDG 1877
D + DD D+D ++ D DDG
Sbjct: 74 DDDEDDEDEDDDDSTLHDDSSADDG 98
|
This is a family of uncharacterized proteins. Length = 449 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 1817 EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDD 1876
+DD D DD + D++DE+DD+D D D + D + + E +L +DD +D+ +
Sbjct: 139 DDDLDDDDIDDDDDDEDDDEDDDDDDV---DDEDEEKKEAKELEKLSDDDDFVWDEDDSE 195
Query: 1877 GD 1878
Sbjct: 196 AL 197
|
Length = 509 |
| >gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 1809 EIGRRRPTEDDSDPDDAESDEEDEEDD----DDVDVDPLLGADLDGDGDSEGDDLSNSDE 1864
E E++ + E D E+EE + +D D DP G DL GD E DL + D+
Sbjct: 43 ETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGDDLPDLGDDEDVDLDDDDD 102
Query: 1865 DDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDED 1902
D + D +D+DD D G G + +E
Sbjct: 103 DTFLEDEEDDDD-----DVSGIIGVPG------DDEEV 129
|
Length = 129 |
| >gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 23/105 (21%)
Query: 1816 TEDDSDPDDAESDEEDEED--DDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDD 1873
T D+ ++ E + E D +++V+V L AD D G GDDL + +D+ V DLDD
Sbjct: 44 TTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKG---GDDLPDLGDDEDV-DLDD 99
Query: 1874 EDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918
+DD F+ D+ ED+D + + +++
Sbjct: 100 DDDDTFLEDE-----------------EDDDDDVSGIIGVPGDDE 127
|
Length = 129 |
| >gnl|CDD|220102 pfam09073, BUD22, BUD22 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 1803 SSARIYEIGRRRPTEDDSDPDDAESDEED------EEDDDDVDVDPLLGADLDGDGDSEG 1856
A+ + D +E ED EED D D G +D + EG
Sbjct: 161 KEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEG 220
Query: 1857 DDLSNSDEDDSVSDLDDEDDGDFMMDDVDY 1886
++ + + ++ S+ + D+ D + +
Sbjct: 221 EEAPSINYNEDTSE-SESDESDSEISESRS 249
|
BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424 |
| >gnl|CDD|220102 pfam09073, BUD22, BUD22 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 1813 RRPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLD 1872
+ + D D +++ES++E + ++ D D + + DS+ +D S D V D
Sbjct: 163 AKESSDKDDEEESESEDESKSEESAEDDS-----DDEEEEDSDSEDYSQYD-GMLVDSSD 216
Query: 1873 DEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918
+E+ + + + E +E + DE + S + +
Sbjct: 217 EEEGEEAPSINYN--------EDTSESESDESDSEISESRSVSDSE 254
|
BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424 |
| >gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 1826 ESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVD 1885
++ + D +VD D + D D + ++ +EDD V LDDE+D + D+ D
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDED-ELDYDEDKEE----EEDDEVDSLDDENDDE---DEDD 146
Query: 1886 YDGGGGLLEIVTEGDEDEDSQLVESLSSGDEE 1917
+ ++EI+ E DE ++ + + +E+
Sbjct: 147 DE----IVEILIEDDEVDEDEDDDEDEEDEED 174
|
Length = 175 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1796 DDQEDMFSSARIYEIGRRRPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSE 1855
D++D + + ++ + +DD D DD D++ ++DDDD D D D D D D E
Sbjct: 112 LDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDE---DDDDDDVDDE 168
Query: 1856 GDDLSNSDEDDSVSDLDDEDDGDFMMDD 1883
++ + E + +SD DD + +
Sbjct: 169 DEEKKEAKELEKLSDDDDFVWDEDDSEA 196
|
Length = 509 |
| >gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.004
Identities = 17/67 (25%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1817 EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDD 1876
ED SD D +S++ ++++++ + + L +D + +++ + S S +D +SD + EDD
Sbjct: 101 EDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLED-LSDDETEDD 159
Query: 1877 GDFMMDD 1883
+ M++
Sbjct: 160 EEKKMEE 166
|
This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1922 | |||
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.92 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.92 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.92 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.92 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.92 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.9 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.9 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.9 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.89 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.89 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.88 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.88 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.88 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.88 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.88 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.87 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.86 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.86 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.86 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.86 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.86 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.86 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.85 | |
| PTZ00421 | 493 | coronin; Provisional | 99.85 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.84 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.83 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.83 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.82 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.82 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.81 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.81 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.81 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.81 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.81 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.81 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.8 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.8 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.8 | |
| PTZ00420 | 568 | coronin; Provisional | 99.79 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.79 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.79 | |
| PTZ00421 | 493 | coronin; Provisional | 99.79 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.79 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.78 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.78 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.78 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.78 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.78 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.77 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.77 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.77 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.77 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.76 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.76 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.76 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.76 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.76 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.75 | |
| PTZ00420 | 568 | coronin; Provisional | 99.75 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.74 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.74 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.73 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.73 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.73 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.72 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.71 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.69 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.67 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.66 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.65 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.63 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.62 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.61 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.61 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.61 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.61 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.6 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.6 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.59 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.57 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.56 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.56 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.56 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.54 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.54 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.54 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.54 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.53 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.52 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.51 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.5 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.49 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.48 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.48 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.46 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.46 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.45 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.43 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.43 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.42 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.41 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.41 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.4 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.4 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.39 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.36 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.36 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.35 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.35 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.34 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.33 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.33 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.32 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.32 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.31 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.3 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.3 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.29 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.29 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.28 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.26 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.25 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.23 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.22 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.2 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.2 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.2 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.18 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.18 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.17 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.16 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.15 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.14 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.14 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.13 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.13 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.11 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.11 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.1 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.09 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.08 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.05 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.01 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.01 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.0 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.99 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.99 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.98 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.97 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.97 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.97 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.97 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.96 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.96 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.95 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.95 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.91 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.89 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.89 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.87 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.87 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.87 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.85 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.81 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.81 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.78 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.77 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.77 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.74 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.74 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.74 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.72 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.72 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 98.7 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.7 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.69 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.68 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.66 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.66 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.65 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.64 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.63 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.62 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.62 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.61 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.6 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.55 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.5 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.47 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.45 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.41 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.4 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.4 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.4 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.39 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.36 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.35 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.32 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.29 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.28 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.25 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.23 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.17 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.14 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.13 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.12 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.08 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.01 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.99 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.96 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.93 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.92 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.92 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 97.87 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.86 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.85 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.84 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.82 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.72 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.67 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.65 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.6 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.53 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.52 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.51 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.38 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.37 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.34 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.32 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.25 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.25 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.24 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.22 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.2 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.16 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 97.15 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.14 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.1 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.1 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.09 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.08 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 97.07 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.06 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.98 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.97 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.96 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.94 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 96.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.76 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.76 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.75 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.62 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 96.61 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.58 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.58 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.53 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.51 | |
| KOG2038 | 988 | consensus CAATT-binding transcription factor/60S r | 96.47 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 96.4 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.35 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.32 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.28 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.16 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.03 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.91 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 95.83 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.83 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 95.66 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.65 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.54 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.23 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.19 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 95.11 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.11 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.04 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.01 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 95.0 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.84 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.66 | |
| PF04147 | 840 | Nop14: Nop14-like family ; InterPro: IPR007276 Emg | 94.57 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.32 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.2 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.84 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 93.71 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 93.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.49 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 93.3 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 93.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.08 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 92.85 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 92.33 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 92.24 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 92.23 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 92.22 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.04 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 91.85 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 91.52 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 91.15 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 90.33 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 90.25 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 90.02 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 89.88 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 89.63 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 89.41 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 89.37 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 88.98 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 88.68 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 88.54 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 88.09 | |
| KOG0262 | 1640 | consensus RNA polymerase I, large subunit [Transcr | 87.89 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 86.37 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 85.94 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 85.92 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 85.81 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 84.89 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 84.86 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 84.67 | |
| KOG2051 | 1128 | consensus Nonsense-mediated mRNA decay 2 protein [ | 84.5 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 84.07 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 84.06 | |
| KOG1189 | 960 | consensus Global transcriptional regulator, cell d | 84.0 | |
| KOG1189 | 960 | consensus Global transcriptional regulator, cell d | 83.59 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 83.53 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 83.11 | |
| PF02724 | 622 | CDC45: CDC45-like protein; InterPro: IPR003874 CDC | 82.83 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 82.01 | |
| PRK10115 | 686 | protease 2; Provisional | 81.76 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 81.67 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 80.66 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 80.43 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 80.4 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 80.15 |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-284 Score=2509.03 Aligned_cols=1398 Identities=57% Similarity=0.900 Sum_probs=1192.3
Q ss_pred cccchhHHHHHHHHHHhhhccccccccccchhHhhhhhcccccccccCccccccccccCCCCccchHHHHHHhhhhhHHh
Q 000177 118 ESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDNVKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAV 197 (1922)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1922)
|++|||+|. ++|+||.|+++||||||| .|.+|+|+|||++..+|++| ++.+|+|+|-|||+||+||+||+
T Consensus 1 ~~s~~~~v~--s~~~l~~~~~~w~~~h~~--~~~~~~~~~~m~~~v~~~~e------~~~k~~~~~f~~~~~~~~~~~~l 70 (1516)
T KOG1832|consen 1 ENSYSTAVK--SARLLMNCSLTWMYPHVF--AVTENFKNWVMEEAVKFPGE------DSAKKEASDFEMLKTYSTGLLAL 70 (1516)
T ss_pred CCceeeehh--hHHHHHHHHHHhcccccc--cccccHHHHHHHHHHcCCch------hhccCCCChhhhcCCCchhhHHH
Confidence 689999999 789999999999999999 77799999999999999999 67789999999999999999999
Q ss_pred hhcCCCceehhhhhhhhHHHHHHhheeeeeccCccccccccccccccccccCcccccccccceeeeccCCCccccccccc
Q 000177 198 CLAGGGQVVEDVLTSGLSAKLMRYLRIRVLGETSQKDANHLAESKNSASATSLRGREEGRVRLRQILEHPDERTIDERSL 277 (1922)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (1922)
.|+..||+||||||+|||+|||||-|.| -|.||+||. ++...+| .|+|.+.+. ..+
T Consensus 71 ~~~~r~~~~~d~~~~~l~~~~~~~~~~~----------~~~t~~~~~----~l~~~~~--~~~~~i~~e-~~~------- 126 (1516)
T KOG1832|consen 71 SLASRGQIVEDVLTSGLSAKLMHYRVLR----------IHTTETKHV----SLKTKEE--SRVRKIVDE-GDH------- 126 (1516)
T ss_pred HHhhhceehhHHHHHHHHHHHHHhhccc----------cccchhhhe----eeecccc--ceeeeeecc-cch-------
Confidence 9999999999999999999999995554 367889997 7777777 678888773 222
Q ss_pred chhhhhcccC-C-CcCCCCCC----CCCCCcccccccccccccccccccccCCCCCCCCCchhhccccCCcccccCCccC
Q 000177 278 DDQDIERVTH-G-DECGADDG----EPHDGLAAGIDMSEAYTDAREGKTKLGDNDETGRDDSSRRRMNRGWIRSRGKGRI 351 (1922)
Q Consensus 278 ~~~~~~~~~~-~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1922)
-+|-+-+ | .++-.||+ +-++ .....|+|+|+|| |++.|+++++||++| +++||+||+
T Consensus 127 ---v~e~~~~~~~~~~qp~~~~~~~~~~~-----------~~~~~d~~~~~~d-~ns~~~~~~~~rl~~--~~~~~~~~~ 189 (1516)
T KOG1832|consen 127 ---VLETGREMGQTDVQPDGEFEIDDVFN-----------VSGVVDCKIKPGD-DNSVRDDPSRHRLNR--SKSRGRGRV 189 (1516)
T ss_pred ---HHHHHHHHhhhccCCCcceecchhcc-----------ccccceeccCCCC-ccchhhhHHHHHHHH--Hhhhhhhhh
Confidence 1221110 1 11222222 2333 6788999999999 899999999999999 899999999
Q ss_pred CCCCcccccccCCCCCCCccCCcccccccCcCccCCCCCCCCccccccccCCCccccccccCccccccccccccchHHHH
Q 000177 352 NEGAIETDQGLTSPVSGSRLGQVRSIRDRSVSKSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMV 431 (1922)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (1922)
-||++.+|+.+.||.- -.|||.+++..|++.+.||.-|.|+|.++.|.|++| +|+|.|+|
T Consensus 190 ~e~~~~t~~~l~s~~l--------l~~d~~~~~~~~g~~a~dv~~~~~~~~sg~mei~~~------------~~~~~~~~ 249 (1516)
T KOG1832|consen 190 HEGAPDTEVLLASPRL--------LVRDRDLSKISDGRNAEDVTVCLGKMKSGIMEIERE------------TKNITDLV 249 (1516)
T ss_pred hcCCCCCcccccCCcc--------cccchhhhhccccccchhhhhccchhcccceEEeec------------ccchhhHH
Confidence 9999999999999854 389999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHhhhhhHHHHHhhhhhhhcccCchhHHHHHHhhhhhhHhhccccceecccccccCccc
Q 000177 432 KKAVRAAEAEARAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVEVSRNSISNNVDS 511 (1922)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1922)
++||.+||.| | ++||+.|.||||||||++| +||+|+|||++++ |||| |||||..+
T Consensus 250 ~r~~~~~~~e-~-~~~~~~~~~~~gd~~~~~~-~~~~~~f~ss~~~--------------~~~~---e~s~~~~s----- 304 (1516)
T KOG1832|consen 250 KRAVGAAETE-R-AHAPDDAAKAAGDAAAELV-TAALEEFKSSGSE--------------IDAA---EVSRNVTS----- 304 (1516)
T ss_pred HHhhccCCcc-c-cCCCcchhhhcccHHHHHH-HHHHhhccCCCcc--------------hhHH---HHhccccc-----
Confidence 9999999999 4 4999999999999999999 9999999999998 6666 99999655
Q ss_pred ccccccccccccccccccccChHHHHHHHHHHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchh
Q 000177 512 VSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLP 591 (1922)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~q~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~ 591 (1922)
+...+|.+...||.++|++++||||||||+|||||||+| |||+++|+++|+.|+.+- ...++.+|+|
T Consensus 305 --------~~t~~v~~~~~~~~~~~~~~~~~~~~q~l~~lgey~e~l-pv~~~~g~~~~~~~~~~~----~q~~d~~l~~ 371 (1516)
T KOG1832|consen 305 --------DQTTDVSEVSLPDIESLAQLQEKYCIQCLEILGEYVEVL-PVLHEKGVDVCIVLLERT----SQLDDSPLLP 371 (1516)
T ss_pred --------ccCccccccccccccchHHHHHHHHHHHHHHHHhHHHHH-HHHHHhCchhhhhhhhhh----hccccccccH
Confidence 778899999999999999999999999999999999999 999999999999988763 3347789999
Q ss_pred hHHHHHHHHhhhhhhHHHHhccccchhhhccCCCcccccccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcC
Q 000177 592 DVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECT 671 (1922)
Q Consensus 592 eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~vPR~s~a~tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecs 671 (1922)
||||+||+|++|||||++||++|||||||.|||+|+||+|||+|||||+|+|++|||||++|.-||+++|+||||||+||
T Consensus 372 ~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs 451 (1516)
T KOG1832|consen 372 DVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCS 451 (1516)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhHhhHhhhhcchhHHHHHhhhcccHHHHHHHHhhhhccccccCCCccccCCccCcCCCCCChhhhchhhhHHHH
Q 000177 672 QDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAY 751 (1922)
Q Consensus 672 hds~r~~A~mFF~~sf~Fr~il~~FD~~dGLrkL~N~i~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~e~~~~s~rQ~~~ 751 (1922)
||+||||++|||+++|+||+|||+||+|||||||+|+|++++|+ +++|. |++-+|+..+++|||++
T Consensus 452 ~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~-~~~n~-------------d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 452 QDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASV-TGANT-------------DRSLPEVMISSSKQMAF 517 (1516)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-hccCc-------------CccccHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999 67764 34444555578899999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCC-CCCCCCCcCcccccccCCHHHHHHHHHHhhcccccCcccccCcchHHHHH
Q 000177 752 HTCVALRQYFRAHLLLLVDSIRPNKSNRS-AGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVRTRWPAVDRF 830 (1922)
Q Consensus 752 h~c~aLR~Yf~aHL~~~v~~~~~~~~~~s-~~~~~~~~~~~~k~~~~s~e~~~~~~~~l~~~r~~~~~~~~~~W~pvd~f 830 (1922)
|||+||||||||||+|||+++|++...+. ++...+..+++|||.+++++++++++++++++|++|+.|+...|++++.|
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 99999999999999999999988765543 44455667789999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHhhhcCCCchhhH---HHHHHHHhccceEEEeecchhhhhhhccccCCcc--chHHHHhhhhccCCC-CCc
Q 000177 831 LSLNGHITLLELCQAPPVERYL---HDLLQYALGVLHIVTLVPNSRKMIVNATLSNNHT--GIAVILDAANAVSSY-VDP 904 (1922)
Q Consensus 831 ~~l~g~~~lL~l~~~~~~~r~~---~e~v~~aL~vL~i~tvvP~~r~~l~~~~~s~~~~--Gi~ilL~~a~~g~~~-~D~ 904 (1922)
++|+|+.+||+||+.+|.|+|+ +|+++|||+||+|+|++|+.|+.|+..+++|++. ||+|||++|+ |+.+ +||
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~-g~~~i~Dp 676 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAAN-GSNSIVDP 676 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccc-ccccccCH
Confidence 9999999999999999999987 9999999999999999999999999999888776 9999999999 8854 599
Q ss_pred cchhHHHHHhhhcccCCCcCCCCCCccccCccccccccCCCCCCCcccccccccccccccccCccccccccccccccccc
Q 000177 905 EIIQPALNVLINLVCPPPSISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDR 984 (1922)
Q Consensus 905 ev~~~AL~Vl~ncVc~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 984 (1922)
|||++||+|||||||+||. ++++.+.+ .|+
T Consensus 677 ei~~~AL~vIincVc~pp~--~r~s~i~~----------v~S-------------------------------------- 706 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPT--TRPSTIVA----------VGS-------------------------------------- 706 (1516)
T ss_pred HHHHHHHhhhheeecCCCC--cchhhhhh----------ccc--------------------------------------
Confidence 9999999999999999984 34332111 010
Q ss_pred CCCcccccccCCCCCCCCCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHhhccccCCCCchh
Q 000177 985 GSSANTQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAAL 1064 (1922)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~e~~~~~~~~~VR~nnGIkvLL~LL~~k~~~Pit~a 1064 (1922)
..||+|+.+|.|.+.+ .+|+.|+|||++||.|||||+||+||+.| .|||+|
T Consensus 707 -----------------------~~g~~r~~l~~~~ks~----~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k--~P~t~a 757 (1516)
T KOG1832|consen 707 -----------------------QSGDRRIFLGAGTKSA----KLEQVLRQMWEAVRGNDGIKILLKLLQYK--NPPTTA 757 (1516)
T ss_pred -----------------------cCCCccccccCCCchH----HHHHHHHHHHHHHhcCccHHHHHHHHhcc--CCCCcH
Confidence 0267788888877654 67999999999999999999999999966 799999
Q ss_pred hHHHHHHHHHHhCccccHHHHHHHHhhcc--hHHHHHHHhccCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCccccc
Q 000177 1065 DCLRALACRVLLGLARDDTIAHILTKLQV--GKKLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAA 1142 (1922)
Q Consensus 1065 D~iRaLAcraL~GLaR~~~vrqIlskLpl--~~~lq~Lmr~p~lq~~~~e~~~f~~~f~~~A~eLie~vt~sGk~~~~~a 1142 (1922)
|||||||||+|+||||+++|||||+|||| +.++|+||++|+.++||.+|+.|| |||.+||+++ +|++.+.-+
T Consensus 758 D~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fc----k~A~~Ll~~~--~g~~lp~~~ 831 (1516)
T KOG1832|consen 758 DCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFC----KLASALLKEA--QGTPLPSSA 831 (1516)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHH----HHHHHHHHHH--hCCcCcccc
Confidence 99999999999999999999999999999 479999999999999999999887 6999999999 599876433
Q ss_pred -ccccCchHHHHHHHhhhhccccccChHHHHHHHHHHHHhcCchHHHHHHHHHcCCCCCCCcCCCCccccccccCCCCcc
Q 000177 1143 -TDAATPTLRRIERAAIAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQESPSI 1221 (1922)
Q Consensus 1143 -~da~~~sL~~i~RA~IvA~T~I~y~e~ELL~LI~~HL~~~GL~~TA~~L~kEA~L~~~p~l~~p~~~~~~~~~~~~~~~ 1221 (1922)
.+ ..+.+.+|++|+++|+|+|++.|||+|||+||.++||..+|.+|++||.||..| +.....| +|..
T Consensus 832 g~~---~~~~~~~~~~v~~~aq~sfp~~elL~li~~HL~ss~L~~~a~vl~~ea~LP~~~---As~~s~f------TP~~ 899 (1516)
T KOG1832|consen 832 GPS---SIAYSTTQEMVTPLAQESFPSNELLSLIKKHLASSTLEMPAPVLQQEAPLPKIN---ASKQSTF------TPSF 899 (1516)
T ss_pred Ccc---hhhhhhHHhhhhhhhhccCCHHHHHHHHHHHHhhcccCCchhhhhccCCCCCcc---ccccccc------Cccc
Confidence 43 577889999999999999999999999999999999999999999999994432 1111112 1211
Q ss_pred cccCCCCCCCCccCccccccccccccccccCCCccccccccccCCccccccccCCCCCCCCCCcccccccCCCCC-CCCC
Q 000177 1222 QIQWPSGRSPGFLTGKSKLAARDEDISLKCDSSMSSKKKQLVFSPSFNLQSRHQSQSHDSQTPSSRKVFSNSKQS-AVPS 1300 (1922)
Q Consensus 1222 ~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~ 1300 (1922)
..+.|.+ ..-+| .+.++.+-..++. +.+-
T Consensus 900 ~~~~p~S--~~~~p------------------------------------------------~~~~~In~~~~s~~a~~~ 929 (1516)
T KOG1832|consen 900 SSKQPFS--HDALP------------------------------------------------QSTQRINCCSNSDPALAD 929 (1516)
T ss_pred cCCCCCC--CCccc------------------------------------------------hhhhhhhccCCCchhhcc
Confidence 1111221 00000 0000000000000 0000
Q ss_pred cccccccccCCCCCCCCCCCCcCccccccccccccccccccccccccccCCCCCCCCCCCCCchhhccccCCCCCCCCCC
Q 000177 1301 VLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELKDTGLSLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGFSTP 1380 (1922)
Q Consensus 1301 ~~~~~~~~~~~~~~~~~~~~~tp~~~p~~r~~~~~~~~~~~~~~~r~~~~~~~~~s~~c~~~~~~rk~~~~~~~~~~~tp 1380 (1922)
.++......-++..++..++.+|++.|.+++.+.+.++. .|...|.+.....|.++++|
T Consensus 930 ~Se~~a~~a~~~~~~a~~q~p~~~~~p~~~~~s~l~~~~---------------------~p~rer~s~~f~~k~~l~~~ 988 (1516)
T KOG1832|consen 930 TSETAAELALKNDLDADAQFPTPISFPRKRKLSELRDSS---------------------VPGRERRSSTFADKSGLQTP 988 (1516)
T ss_pred cccccchhccCCCCCccccCCCCCCCCcccCCccccCcc---------------------cccccccCCCCcccccccCh
Confidence 000000000112445556777888888888776654221 12222333333445567778
Q ss_pred CCcccccccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCCCCCCcccCCCCCC
Q 000177 1381 GSLAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKR 1460 (1922)
Q Consensus 1381 ~s~~~~~d~~q~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~LdsIVtqyLr~QH~qC~~PVtt~PpfSLl~pH~CPePk~ 1460 (1922)
+|. ++.+|.+-.-.| +..|.+|.+.+||+||+||||+||++|+|||+||||||||+||+||+|++
T Consensus 989 ~s~---l~a~~~g~s~~g------------q~~~~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~ 1053 (1516)
T KOG1832|consen 989 ASA---LDANQSGSSRLG------------QMTPANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKR 1053 (1516)
T ss_pred hhh---cCCCCCCccccc------------cCCCcCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHH
Confidence 776 666663322222 23466888999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecccccceecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000177 1461 SLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS 1540 (1922)
Q Consensus 1461 ~lsAP~N~aaRl~sr~l~~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t 1540 (1922)
.+.+|.|++.|+.+|.+++.|+|.+|.++++++++++|++|++|+.|. ..++|++|+.+.++|+.|+..|.|++|++.+
T Consensus 1054 ~~~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~frd~~-~~fTc~afs~~~~hL~vG~~~Geik~~nv~s 1132 (1516)
T KOG1832|consen 1054 LLEAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFRDET-ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS 1132 (1516)
T ss_pred HhhcchhhhhcccchhhcCcccccccCcccchhhHhhcccchhhhccc-cceeeEEeecCCceEEeeeccceEEEEEccC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCceeeeccCCCCeeEEEeeecCCCcEEEEec---CCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCC
Q 000177 1541 SSPLESCTSHQAPVTLVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDR 1617 (1922)
Q Consensus 1541 gk~l~tL~gHss~VtsLq~afSpDG~lLaSSs---DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~Dg 1617 (1922)
|.....+.||.++|+.| ..+.||..+++++ .--..+|++.. .+.+.++|.+..++.|+..-..-+.| +...
T Consensus 1133 G~~e~s~ncH~SavT~v--ePs~dgs~~Ltsss~S~PlsaLW~~~s-~~~~~Hsf~ed~~vkFsn~~q~r~~g---t~~d 1206 (1516)
T KOG1832|consen 1133 GSMEESVNCHQSAVTLV--EPSVDGSTQLTSSSSSSPLSALWDASS-TGGPRHSFDEDKAVKFSNSLQFRALG---TEAD 1206 (1516)
T ss_pred ccccccccccccccccc--cccCCcceeeeeccccCchHHHhcccc-ccCccccccccceeehhhhHHHHHhc---cccc
Confidence 99999999999999999 6688898888753 23578999987 47889999999999999864433333 3335
Q ss_pred eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeeccEEEEcCCCcceeeeccCCCceEEEEecCCCEEEE
Q 000177 1618 GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1618 tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSggrLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LAS 1697 (1922)
.+.|||++|+..+.++-.+... ..+..+.+.|+|++.+++..|.+||+|....||+|+.++..+...|||+|+.|++
T Consensus 1207 ~a~~YDvqT~~~l~tylt~~~~---~~y~~n~a~FsP~D~LIlndGvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1207 DALLYDVQTCSPLQTYLTDTVT---SSYSNNLAHFSPCDTLILNDGVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVII 1283 (1516)
T ss_pred ceEEEecccCcHHHHhcCcchh---hhhhccccccCCCcceEeeCceeeeeccHHHHhhhhhheecccccccCCCceEEe
Confidence 6899999999988884322222 2466778999999999999999999999999999999998789999999999999
Q ss_pred EeEEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCc
Q 000177 1698 NSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRC 1777 (1922)
Q Consensus 1698 GSeIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~ 1777 (1922)
+++|||++|++++++++..+++.|.||..|++||+.. +..+.+..+|++++++|++++|++|++.+|++|+|++++|+
T Consensus 1284 NSEIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~~--~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~ 1361 (1516)
T KOG1832|consen 1284 NSEIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAML--NIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRC 1361 (1516)
T ss_pred echhhhhHHHHHHhcCccccceEEEeccCccchhhhh--hhhhhhhhhcccccccchhhhhccccccccccceeeecccc
Confidence 9999999999999999999999999999999999985 55677888999999999999999999999999999999999
Q ss_pred eEEEEEcCCCceEEEEecCCCCCc---cceEEEEEecCCCCCCCCCCCCCCCCCcCccCC
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDM---FSSARIYEIGRRRPTEDDSDPDDAESDEEDEED 1834 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~---dSsVRLyEVGr~r~~EDDeDdEDedDeDDDEDD 1834 (1922)
|.|+|.+|.+++++||++.+..++ .+++|+||+||+++.+||+|+||+++++|+|+|
T Consensus 1362 ~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~yEIGR~r~~~dd~DeeeD~e~Ed~dEd 1421 (1516)
T KOG1832|consen 1362 LLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARMYEIGRRRPTDDDSDEEEDDETEDEDED 1421 (1516)
T ss_pred hhhhhcCCccceEEEEeccChhhhhhhhhhhhhhhhcccCCCccccCccccchhhccccc
Confidence 999999999999999998775544 568999999999998877777665555554444
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=315.49 Aligned_cols=259 Identities=19% Similarity=0.330 Sum_probs=232.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC--CcEEEEe-cCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE--TQLLLSS-SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD--G~lLaSS-sDgtVkLWDl~t~~g 1586 (1922)
.+|..|.||.|++.|+|||.+|.++||+..+.+.+.+|.||+..|.++ .|+|. +.-++|+ .||+|++|++.+ .
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~--~fhP~~~~~~lat~s~Dgtvklw~~~~--e 251 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAA--VFHPVDSDLNLATASADGTVKLWKLSQ--E 251 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeE--EEccCCCccceeeeccCCceeeeccCC--C
Confidence 789999999999999999999999999999999999999999999999 78886 5577775 599999999997 6
Q ss_pred CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEe
Q 000177 1587 GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLL 1660 (1922)
Q Consensus 1587 k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLa 1660 (1922)
.++..+.+| ..++|||+|++|+|+ +.|.+.++||+++++.+.... ||...+ ++|+|||.+++
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~Ta---sfD~tWRlWD~~tk~ElL~QE---------GHs~~v~~iaf~~DGSL~~ 319 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTA---SFDSTWRLWDLETKSELLLQE---------GHSKGVFSIAFQPDGSLAA 319 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeec---ccccchhhcccccchhhHhhc---------ccccccceeEecCCCceee
Confidence 889999987 679999999999999 889999999999988766443 666555 99999999999
Q ss_pred ecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEcc-C
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNA-R 1726 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSP-d 1726 (1922)
|+| +|||+|+|++|..|.+|...| +|.|+|||..||+|| +|||++..+.+.++++|.+ +.|.|+| .
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 999 999999999999999999999 999999999999999 6999999999999999998 8999999 7
Q ss_pred CCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceE
Q 000177 1727 GDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSA 1805 (1922)
Q Consensus 1727 G~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsV 1805 (1922)
|.+|++++ ++...++|...+++++.+... +..|..+.+++++.+|+... .|.++
T Consensus 400 g~fL~Tas-------------------yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s------~DRT~ 454 (459)
T KOG0272|consen 400 GYFLVTAS-------------------YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS------FDRTI 454 (459)
T ss_pred CeEEEEcc-------------------cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec------cCcee
Confidence 88888885 566778888899999888876 55699999999999998653 55788
Q ss_pred EEEE
Q 000177 1806 RIYE 1809 (1922)
Q Consensus 1806 RLyE 1809 (1922)
++|.
T Consensus 455 KLW~ 458 (459)
T KOG0272|consen 455 KLWR 458 (459)
T ss_pred eecc
Confidence 8884
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=292.06 Aligned_cols=281 Identities=19% Similarity=0.304 Sum_probs=234.7
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-eeeccCCCCeeEEEe---eecCCC
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-ESCTSHQAPVTLVQS---HLSGET 1565 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-~tL~gHss~VtsLq~---afSpDG 1565 (1922)
.|-|...+-.|..++++|. ..|.|++|+|||++||+|+.||+|++||..+|+++ ..+.+|...|++++| ...|..
T Consensus 139 vR~WD~~TeTp~~t~KgH~-~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 139 VRLWDLDTETPLFTCKGHK-NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC 217 (480)
T ss_pred EEeeccCCCCcceeecCCc-cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc
Confidence 3444456677899999999 99999999999999999999999999999998776 578999999999965 344577
Q ss_pred cEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc
Q 000177 1566 QLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1566 ~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~ 1640 (1922)
++|++++ ||+|+|||+.. ++++..+.+| +|+.|--+| +|+++ +.|++|++|+...|++...+.
T Consensus 218 r~las~skDg~vrIWd~~~--~~~~~~lsgHT~~VTCvrwGG~g-liySg---S~DrtIkvw~a~dG~~~r~lk------ 285 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKL--GTCVRTLSGHTASVTCVRWGGEG-LIYSG---SQDRTIKVWRALDGKLCRELK------ 285 (480)
T ss_pred cceecccCCCCEEEEEccC--ceEEEEeccCccceEEEEEcCCc-eEEec---CCCceEEEEEccchhHHHhhc------
Confidence 7888854 99999999987 8899999987 789997654 67888 999999999999999988886
Q ss_pred cCCCCcceEEEE-----------cCCCCe-------------------------Eeecc-----EEEEcCC-Ccceeeec
Q 000177 1641 TGRGHAYSQIHF-----------SPSDTM-------------------------LLWNG-----ILWDRRN-SVPVHRFD 1678 (1922)
Q Consensus 1641 ~~~gh~~~vVaF-----------SPdG~l-------------------------LaSgg-----rLWDlrt-gk~I~kf~ 1678 (1922)
+|+|-++.++. .|.++. +++++ .+|+... .+++.+..
T Consensus 286 -GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt 364 (480)
T KOG0271|consen 286 -GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT 364 (480)
T ss_pred -ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh
Confidence 44555555444 455554 88877 8999875 45999999
Q ss_pred cCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhccccc
Q 000177 1679 QFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRV 1750 (1922)
Q Consensus 1679 gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ 1750 (1922)
+|...| .+.||||+++|+++| ++||.++|+.+.++.||-. ..|+|+.|.+.|++++
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S---------------- 428 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS---------------- 428 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC----------------
Confidence 999988 999999999999999 7999999999999999977 8999999999999995
Q ss_pred ccCCcceEEEEecCCCceeeeec-cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1751 KHPLFAAFRTVDAINYSDIATIP-VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1751 ksp~~ssFrt~Da~dys~IaTid-vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
.++.+++|+..+-+...... ....|+.+.|+|+|..++ +...+.++|+|.
T Consensus 429 ---kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~------sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 ---KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA------SGGKDKVLRLWR 479 (480)
T ss_pred ---CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee------cCCCceEEEeec
Confidence 34567788877766655555 355699999999999877 455668889884
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=288.22 Aligned_cols=279 Identities=15% Similarity=0.264 Sum_probs=237.5
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtV 1576 (1922)
++....+.||. +.|.|++|+|+|..|+||+.|.++++||+.+..+..+.++|...|.|| +|+|||+.|++|+ ||+|
T Consensus 105 trCssS~~GH~-e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcv--awsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 105 TRCSSSIAGHG-EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCV--AWSPDGKKIASGSKDGSI 181 (480)
T ss_pred ceeccccCCCC-CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEE--EECCCcchhhccccCCeE
Confidence 34556788999 999999999999999999999999999999999999999999999999 8999999999965 9999
Q ss_pred EEeccCCCCCCc-ceEeccc----eeEEEcC-----CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1577 HLWNASSIAGGP-MHSFEGC----KAARFSN-----SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1577 kLWDl~t~~gk~-l~tf~gh----~sVaFSP-----DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++||..+ +++ ...|.+| ++++|.| ..++|+++ +.||.|+|||+..+.++.++. +|.
T Consensus 182 ~lwdpkt--g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~---skDg~vrIWd~~~~~~~~~ls---------gHT 247 (480)
T KOG0271|consen 182 RLWDPKT--GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS---SKDGSVRIWDTKLGTCVRTLS---------GHT 247 (480)
T ss_pred EEecCCC--CCcccccccCcccceeEEeecccccCCCccceecc---cCCCCEEEEEccCceEEEEec---------cCc
Confidence 9999988 544 4667776 7899987 46789998 999999999999999999987 777
Q ss_pred ceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EE-----------EEecCCCE-------------
Q 000177 1647 YSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GG-----------GFHPAGNE------------- 1694 (1922)
Q Consensus 1647 ~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sV-----------aFSPdG~~------------- 1694 (1922)
..+ +.|--+ .++.+++ ++|+...|++++.+.+|..+| .+ +|.|.|++
T Consensus 248 ~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 248 ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 665 666543 3667777 999999999999999998877 33 56676666
Q ss_pred ------------EEEEeE-----EEecCC-CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCC
Q 000177 1695 ------------VIINSE-----VWDLRK-FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPL 1754 (1922)
Q Consensus 1695 ------------LASGSe-----IWDLrT-gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~ 1754 (1922)
+++|+. +|+-.. .+++..+.+|.. +.|.||||+++|++++ |
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS-------------------F 387 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS-------------------F 387 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee-------------------c
Confidence 999994 898754 458888899988 8999999999999996 6
Q ss_pred cceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCCCCCCCC
Q 000177 1755 FAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPTEDD 1819 (1922)
Q Consensus 1755 ~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~r~~EDD 1819 (1922)
+.+++.|+..+.+-++++.. -..|+.++|+.+.+.+. +...|+++++|+|..++...|-
T Consensus 388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlV------S~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLV------SGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEE------EcCCCceEEEEEeeeeeecccC
Confidence 77889999999999998874 45699999999988766 3556789999999888765543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=285.12 Aligned_cols=238 Identities=18% Similarity=0.235 Sum_probs=212.8
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEE
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGD--SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD--G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq 1558 (1922)
.|+..|....|. ......+++|+||. +.|.++.|+|. +..||||+.||+|++|++.+..++..+.+|...|..+
T Consensus 192 T~swsG~~kvW~--~~~~~~~~~l~gH~-~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~V- 267 (459)
T KOG0272|consen 192 TGSWSGLVKVWS--VPQCNLLQTLRGHT-SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRV- 267 (459)
T ss_pred EeecCCceeEee--cCCcceeEEEeccc-cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheee-
Confidence 344444444444 45568899999999 99999999996 6699999999999999999989999999999999999
Q ss_pred eeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1559 SHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1559 ~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
+|+|+|++|.|+ -|.+-+|||+++ +..+....|| .+++|+|||..+++| +.|..-+|||+++|.++..+
T Consensus 268 -afHPsG~~L~TasfD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~DGSL~~tG---GlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 268 -AFHPSGKFLGTASFDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQPDGSLAATG---GLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred -eecCCCceeeecccccchhhccccc--chhhHhhcccccccceeEecCCCceeecc---CccchhheeecccCcEEEEe
Confidence 999999999995 599999999998 6666666665 889999999999999 88999999999999999998
Q ss_pred ccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEec-CCCEEEEEe-----
Q 000177 1634 SDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHP-AGNEVIINS----- 1699 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSP-dG~~LASGS----- 1699 (1922)
. +|...+ +.|+|+|..++|++ +|||++..++++++.+|.+.| .|.|+| .|.+|++++
T Consensus 342 ~---------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 342 A---------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred c---------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence 6 677766 99999999999999 999999999999999999999 899999 788999999
Q ss_pred EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+||..+++.+++++.||+. .++.++|+|.+|++++.+.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 6999999999999999988 7999999999999986333
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=280.57 Aligned_cols=339 Identities=17% Similarity=0.219 Sum_probs=268.5
Q ss_pred CcccccccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCCCCCCcccCCCCCCC
Q 000177 1382 SLAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRS 1461 (1922)
Q Consensus 1382 s~~~~~d~~q~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~LdsIVtqyLr~QH~qC~~PVtt~PpfSLl~pH~CPePk~~ 1461 (1922)
.|.++++.++ .|+||..++ |+.||..++.|++..|..+|.+++ +|..++|+.+|+|..-
T Consensus 152 ~R~~ll~els-kyi~p~ill----------------P~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~~--- 210 (519)
T KOG0293|consen 152 ERDKLLDELS-KYIPPNILL----------------PKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGRL--- 210 (519)
T ss_pred hHHHHHHHHH-hhCCHhhcC----------------ChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCcc---
Confidence 5677899999 899999887 689999999999999999998887 6888999999999943
Q ss_pred CCCCCcceeecccccceecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000177 1462 LDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS 1541 (1922)
Q Consensus 1462 lsAP~N~aaRl~sr~l~~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg 1541 (1922)
+ -.++..++|..|+ +.||.+.||++|++|||+|+|.+..||.+...
T Consensus 211 --------------q-------------------ip~qt~qil~~ht-dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d 256 (519)
T KOG0293|consen 211 --------------Q-------------------IPSQTWQILQDHT-DEVWFLQFSHNGKYLASASKDSTAIIWIVVYD 256 (519)
T ss_pred --------------c-------------------CCchhhhhHhhCC-CcEEEEEEcCCCeeEeeccCCceEEEEEEecC
Confidence 1 0123356788999 99999999999999999999999999998654
Q ss_pred C---ceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeec
Q 000177 1542 S---PLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPT 1612 (1922)
Q Consensus 1542 k---~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~ 1612 (1922)
. ..+++.+|..+|..| .||||.++|++|. |..+++||+.+ +.+.+.+.. ..+++|.|||..|++|
T Consensus 257 ~~~kl~~tlvgh~~~V~yi--~wSPDdryLlaCg~~e~~~lwDv~t--gd~~~~y~~~~~~S~~sc~W~pDg~~~V~G-- 330 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYI--MWSPDDRYLLACGFDEVLSLWDVDT--GDLRHLYPSGLGFSVSSCAWCPDGFRFVTG-- 330 (519)
T ss_pred cceeeeeeeecccCceEEE--EECCCCCeEEecCchHheeeccCCc--chhhhhcccCcCCCcceeEEccCCceeEec--
Confidence 3 467889999999999 8999999999965 88899999998 777666642 3789999999999999
Q ss_pred CCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEE
Q 000177 1613 ETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGG 1687 (1922)
Q Consensus 1613 ~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVa 1687 (1922)
+.|+++..||+.. .....+.. .+...+..++.++||+++++.+ ++++..+...+.....+....+.+
T Consensus 331 -s~dr~i~~wdlDg-n~~~~W~g------vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 331 -SPDRTIIMWDLDG-NILGNWEG------VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred -CCCCcEEEecCCc-chhhcccc------cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence 8899999999973 44444430 0112244499999999998766 788887765555555554444999
Q ss_pred EecCCCEEEEEe-----EEEecCCCeEEEEEcCCCce----eEEEcc-CCCEEEEEEccCchhhhhhhcccccccCCcce
Q 000177 1688 FHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQT----TITFNA-RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAA 1757 (1922)
Q Consensus 1688 FSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~~----sVaFSP-dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ss 1757 (1922)
.|.+|++++++- .+||+...++++.+.||.+. .-+|.. +..+|++|+ -++.
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-------------------ED~k 463 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-------------------EDSK 463 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-------------------CCce
Confidence 999999998887 49999999999999999872 233443 336676663 2245
Q ss_pred EEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1758 FRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1758 Frt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
+++|+....+++++.... +.|+.++|+|.+..+-. +...|+++|||..++.
T Consensus 464 vyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A-----SasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 464 VYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA-----SASDDGTIRIWGPSDN 515 (519)
T ss_pred EEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh-----ccCCCCeEEEecCCcc
Confidence 788888899999988774 56999999998875432 3344689999987643
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=256.09 Aligned_cols=272 Identities=19% Similarity=0.278 Sum_probs=228.5
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dgt 1575 (1922)
.++..++|+||. +.|.++.|++|.++|+++|.||.+.|||..+.+.+..+.-....|..+ +|+|.|+++++|. |+.
T Consensus 44 ~~~~rr~LkGH~-~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtC--A~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 44 QMRTRRTLKGHL-NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTC--AYSPSGNFVACGGLDNK 120 (343)
T ss_pred eeeeEEEecccc-cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEE--EECCCCCeEEecCcCce
Confidence 355568999999 999999999999999999999999999999999888887778888888 9999999999965 999
Q ss_pred EEEeccCCCC--C--CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1576 VHLWNASSIA--G--GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1576 VkLWDl~t~~--g--k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
..||++.+.. + ...+.+.+| .++.|-+| ..|+|+ +.|.+..+||+++++.+..|. ||..
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~---SGD~TCalWDie~g~~~~~f~---------GH~g 187 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTG---SGDMTCALWDIETGQQTQVFH---------GHTG 187 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEec---CCCceEEEEEcccceEEEEec---------CCcc
Confidence 9999998521 1 234567777 56788775 567888 889999999999999999886 7877
Q ss_pred eE--EEEcC-CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1648 SQ--IHFSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1648 ~v--VaFSP-dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
.+ +.++| +++.+++++ +|||+|.+.++++|.+|..-| ++.|+|+|.-+++|+ ++||+|..+.+..+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 76 88899 999999998 999999999999999999999 999999999999999 69999999999888
Q ss_pred cCCCc----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCc
Q 000177 1714 PSLDQ----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDS 1788 (1922)
Q Consensus 1714 ~gH~~----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds 1788 (1922)
..... ++|+||..|++|++++.+.. ..+||......+..... +.+|..+..+|+|.
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy~d~~-------------------c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGYDDFT-------------------CNVWDTLKGERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeeecCCc-------------------eeEeeccccceEEEeeccCCeeEEEEECCCCc
Confidence 74333 79999999999999964432 23445444444455544 44599999999999
Q ss_pred eEEEEecCCCCCccceEEEEE
Q 000177 1789 FVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyE 1809 (1922)
-++ +...|+.+|||.
T Consensus 329 av~------TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 AVA------TGSWDSTLRIWA 343 (343)
T ss_pred EEE------ecchhHheeecC
Confidence 877 456788999983
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=249.39 Aligned_cols=270 Identities=18% Similarity=0.268 Sum_probs=223.2
Q ss_pred eEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC-----CCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecC
Q 000177 1501 WRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSN-----SSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~-----tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsD 1573 (1922)
..+|++|. +.|+.++..+. .+.|++++.|.+|.+|++. .|..++.|.||...|..+ ..++||++.++ |.|
T Consensus 8 ~~tl~gh~-d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv--~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 8 RGTLEGHT-DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDV--VLSSDGNFALSASWD 84 (315)
T ss_pred eeeecCCC-ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecce--EEccCCceEEecccc
Confidence 45789999 99999999985 5689999999999999985 466788999999999999 88999999999 569
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc--
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY-- 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-- 1647 (1922)
+++++||+.+ +++.+.|.+| .+++|++|.+.|++| +.|++|++|++.. .+..++.. ..+..
T Consensus 85 ~~lrlWDl~~--g~~t~~f~GH~~dVlsva~s~dn~qivSG---SrDkTiklwnt~g-~ck~t~~~-------~~~~~WV 151 (315)
T KOG0279|consen 85 GTLRLWDLAT--GESTRRFVGHTKDVLSVAFSTDNRQIVSG---SRDKTIKLWNTLG-VCKYTIHE-------DSHREWV 151 (315)
T ss_pred ceEEEEEecC--CcEEEEEEecCCceEEEEecCCCceeecC---CCcceeeeeeecc-cEEEEEec-------CCCcCcE
Confidence 9999999998 7889999887 789999999999999 9999999999985 44455531 12233
Q ss_pred eEEEEcCC--CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE-----EEecCCCeEEEEEc
Q 000177 1648 SQIHFSPS--DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1648 ~vVaFSPd--G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IWDLrTgklL~tl~ 1714 (1922)
.++.|+|+ ..+|++++ ++||+++.+..+.|.+|+..+ .+.+||||..+++|++ +||++.++.+.++.
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 44999998 68888888 999999999999999999999 9999999999999995 99999999999998
Q ss_pred CCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc----------CCceEEEEE
Q 000177 1715 SLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV----------DRCVLDFAT 1783 (1922)
Q Consensus 1715 gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv----------kr~I~dLa~ 1783 (1922)
+... ++++|+|+-.+|+++. .+++++||..+-..+.+... ...-..++|
T Consensus 232 a~~~v~sl~fspnrywL~~at--------------------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAAT--------------------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred CCCeEeeEEecCCceeEeecc--------------------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 6665 8999999998888872 23455555544443333322 223567899
Q ss_pred cCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1784 ERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1784 SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+++|..+-. +..++.+|+|+|.+
T Consensus 292 s~dG~tLf~------g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 292 SADGQTLFA------GYTDNVIRVWQVAK 314 (315)
T ss_pred cCCCcEEEe------eecCCcEEEEEeec
Confidence 999987662 45668999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=249.13 Aligned_cols=228 Identities=18% Similarity=0.337 Sum_probs=195.2
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
...+.+.+.|+||. -.|..+..++||++.+++|.|+++++||+.+++..+.|.||...|.++ +|++|++.|++++ |
T Consensus 50 ~~~G~~~r~~~GHs-H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsv--a~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 50 IKYGVPVRRLTGHS-HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSV--AFSTDNRQIVSGSRD 126 (315)
T ss_pred cccCceeeeeeccc-eEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEE--EecCCCceeecCCCc
Confidence 34467889999999 999999999999999999999999999999999999999999999999 8999999999966 9
Q ss_pred CcEEEeccCCCCCCcceEecc------ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG------CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g------h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
.+|++||+. +.+..++.. +.|+.|+|+ ..+|+++ +.|++|++||+++.+...++. ++.+
T Consensus 127 kTiklwnt~---g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~---s~DktvKvWnl~~~~l~~~~~-------gh~~ 193 (315)
T KOG0279|consen 127 KTIKLWNTL---GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA---SWDKTVKVWNLRNCQLRTTFI-------GHSG 193 (315)
T ss_pred ceeeeeeec---ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc---cCCceEEEEccCCcchhhccc-------cccc
Confidence 999999997 567766644 479999997 6788888 999999999999988877764 2344
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEc--
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVP-- 1714 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~-- 1714 (1922)
..+.+++||||.+++++| .+||++.++.++.+.......+++|+|+-.+|+.+. +|||+.+..++..+.
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 455599999999999998 899999999998886544333999999999888776 799999988877665
Q ss_pred --CC-----Cc--eeEEEccCCCEEEEEEccCc
Q 000177 1715 --SL-----DQ--TTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1715 --gH-----~~--~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
+. .. .+++|+++|..|++++.++.
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 22 11 58999999999999976554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=256.22 Aligned_cols=266 Identities=16% Similarity=0.280 Sum_probs=223.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~ 1588 (1922)
..|..|.|.|+|+.|++|+..|.+.+|+..+......++.|.++|+++ .|++++.++++|+ +|.||+|+..- ..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnm---nn 171 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNM---NN 171 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeE--EEccCCCEEEEcCCCceEEecccch---hh
Confidence 569999999999999999999999999987766666779999999999 8899999999986 89999999874 34
Q ss_pred ceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1589 MHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1589 l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
+..++. +++++|+|+...|+++ +.|++|+|||....+....+. +++..+.++.|+|.-.+|+++|
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~~kee~vL~-------GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRMPKEERVLR-------GHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccCCchhheec-------cCCCCcceeccCCccceeEEcc
Confidence 445544 4899999999999999 999999999999888776664 5667777899999999999999
Q ss_pred -----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEE
Q 000177 1664 -----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVI 1730 (1922)
Q Consensus 1664 -----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~L 1730 (1922)
++||.++|.++.++.+|.+.| .+.|+|++++|+++| +++|+++-+.+.++.+|.. +++.|+|-..-|
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 999999999999999999999 999999999999999 4999999999999999987 899999988777
Q ss_pred EEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc--CCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1731 YAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1731 aSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
++.... +.++..+......++..+.. ...|++++|+|-|..++. ...+..+|.|
T Consensus 322 ftsgg~------------------Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~t------gsnd~t~rfw 377 (464)
T KOG0284|consen 322 FTSGGS------------------DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILAT------GSNDRTVRFW 377 (464)
T ss_pred eeeccC------------------CCceEEEeccccccccCCCcccccceeeeeccccceeEee------cCCCcceeee
Confidence 765332 23344444444455555554 557999999999999985 3345789999
Q ss_pred EecCCC
Q 000177 1809 EIGRRR 1814 (1922)
Q Consensus 1809 EVGr~r 1814 (1922)
.-+|..
T Consensus 378 ~r~rp~ 383 (464)
T KOG0284|consen 378 TRNRPG 383 (464)
T ss_pred ccCCCC
Confidence 754443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-23 Score=225.51 Aligned_cols=269 Identities=22% Similarity=0.377 Sum_probs=220.4
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
+++|++|. +.|++++|+|++++|++|+.||.|++|++.+++....+.+|...+..+ .|++++++++++ .|+.|++|
T Consensus 2 ~~~~~~h~-~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHT-GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV--AASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccC-CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEE--EECCCCCEEEEEcCCCeEEEE
Confidence 35678999 999999999999999999999999999999998888899999999999 889999888875 59999999
Q ss_pred ccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
|+.. ++.+..+.. +.++.|+|++++++++ +.|+.|++||+.+++....+. .+......+.|+|+
T Consensus 79 ~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~ 146 (289)
T cd00200 79 DLET--GECVRTLTGHTSYVSSVAFSPDGRILSSS---SRDKTIKVWDVETGKCLTTLR-------GHTDWVNSVAFSPD 146 (289)
T ss_pred EcCc--ccceEEEeccCCcEEEEEEcCCCCEEEEe---cCCCeEEEEECCCcEEEEEec-------cCCCcEEEEEEcCc
Confidence 9987 566666654 4789999998888887 678999999999888877765 11223555999999
Q ss_pred CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEE
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTIT 1722 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVa 1722 (1922)
+.++++++ ++||+++++++..+..|...+ ++.|+|+++.+++++ .+||+++++.+..+..|.. .++.
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE
Confidence 99888764 899999999999999888777 999999998888887 4999999999988877764 7999
Q ss_pred EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCc
Q 000177 1723 FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDM 1801 (1922)
Q Consensus 1723 FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~ 1801 (1922)
|+|++.+++++.. ...+++|+..+...+..+.. ...|..++|+|++.++++.. .
T Consensus 227 ~~~~~~~~~~~~~-------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~ 281 (289)
T cd00200 227 FSPDGYLLASGSE-------------------DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS------A 281 (289)
T ss_pred EcCCCcEEEEEcC-------------------CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec------C
Confidence 9999888888731 23456666665666555543 34699999999998887653 3
Q ss_pred cceEEEEE
Q 000177 1802 FSSARIYE 1809 (1922)
Q Consensus 1802 dSsVRLyE 1809 (1922)
++.+++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 35677774
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=267.61 Aligned_cols=192 Identities=23% Similarity=0.344 Sum_probs=179.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
.-..+++.||+ ++|..+.|+|+.++|+++|.|++|++|.+.+..++..++||..||+.+ .|+|-|.+++|+ .|++.
T Consensus 441 ~~~~~~L~GH~-GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV--~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 441 SGTSRTLYGHS-GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV--QFAPRGYYFATASHDQTA 517 (707)
T ss_pred CceeEEeecCC-CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeE--EecCCceEEEecCCCcee
Confidence 34456799999 999999999999999999999999999999999999999999999999 789999999995 59999
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--E
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--I 1650 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--V 1650 (1922)
+||.... ..+++.|.+| .|+.|||+..++++| +.|++|++||+.+|..+..|. ||..++ +
T Consensus 518 rLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y~aTG---SsD~tVRlWDv~~G~~VRiF~---------GH~~~V~al 583 (707)
T KOG0263|consen 518 RLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNYVATG---SSDRTVRLWDVSTGNSVRIFT---------GHKGPVTAL 583 (707)
T ss_pred eeeeccc--CCchhhhcccccccceEEECCcccccccC---CCCceEEEEEcCCCcEEEEec---------CCCCceEEE
Confidence 9999987 7889998886 789999999999999 999999999999999999996 677666 9
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
+|||+|++|++++ ++||+.+++++..+.+|.+.+ ++.|+.+|..||+|+ ++||+..
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999 999999999999999998888 999999999999999 6999875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=243.63 Aligned_cols=274 Identities=18% Similarity=0.264 Sum_probs=230.1
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..++..+++.+|. +.|.|+++.|-.++++||+.|++|+|||+.+|+...++.||-..|..+ ++|+-..|++++ .|+
T Consensus 139 apwKl~rVi~gHl-gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~v--avS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 139 APWKLYRVISGHL-GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGV--AVSKRHPYLFSAGEDK 215 (460)
T ss_pred Ccceehhhhhhcc-ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeee--eecccCceEEEecCCC
Confidence 3456678889999 999999999999999999999999999999999999999999999999 889999999995 699
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE-
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ- 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v- 1649 (1922)
.|+-||+.. .+.++.+.|| .|++.+|.-+.|++| +.|.+++|||+++...+.++. ||...+
T Consensus 216 ~VKCwDLe~--nkvIR~YhGHlS~V~~L~lhPTldvl~t~---grDst~RvWDiRtr~~V~~l~---------GH~~~V~ 281 (460)
T KOG0285|consen 216 QVKCWDLEY--NKVIRHYHGHLSGVYCLDLHPTLDVLVTG---GRDSTIRVWDIRTRASVHVLS---------GHTNPVA 281 (460)
T ss_pred eeEEEechh--hhhHHHhccccceeEEEeccccceeEEec---CCcceEEEeeecccceEEEec---------CCCCcce
Confidence 999999998 7888887776 889999999999999 899999999999999999986 676665
Q ss_pred -EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc
Q 000177 1650 -IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 -VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+.+.|.+..+++++ ++||++.|+...++..|...+ +++.||....+++++ +-|++..+..++.+.+|..
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccc
Confidence 88899999999988 999999999999999999888 999999999999999 6899999999999999987
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceee------eeccCCceEEEEEcCCCceE
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA------TIPVDRCVLDFATERTDSFV 1790 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia------Tidvkr~I~dLa~SPdds~L 1790 (1922)
++++.+.|| ++++| .++....+|.. -+..+|+... +++.+..|+..+|+..+..|
T Consensus 362 iintl~~nsD~-v~~~G-~dng~~~fwdw---------------ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 362 IINTLSVNSDG-VLVSG-GDNGSIMFWDW---------------KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred eeeeeeeccCc-eEEEc-CCceEEEEEec---------------CcCcccccccccccCCccccccceeEEeecccCceE
Confidence 788888886 44444 23322221111 1233444443 33456789999999999988
Q ss_pred EEEecCCCCCccceEEEEE
Q 000177 1791 GLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1791 AVVe~dds~d~dSsVRLyE 1809 (1922)
... +.+..+++|+
T Consensus 425 it~------eadKtIk~~k 437 (460)
T KOG0285|consen 425 ITG------EADKTIKMYK 437 (460)
T ss_pred Eec------cCCcceEEEe
Confidence 754 4557788885
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=264.97 Aligned_cols=218 Identities=21% Similarity=0.344 Sum_probs=193.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------------------CceeeeccCCCCeeEEE
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSS-------------------------------SPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg-------------------------------k~l~tL~gHss~VtsLq 1558 (1922)
..++|+.|++|+++||.|-.|..|++|.+... ...+++.||.++|+.+
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~- 457 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC- 457 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee-
Confidence 57999999999999999999999999998631 1134678999999999
Q ss_pred eeecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1559 SHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1559 ~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
.|+|+.++|++|+ |++|+||.+.+ ..++-.++|| +.+.|+|-|-+|+++ +.|++.++|.....+.+..|
T Consensus 458 -sFsPd~rfLlScSED~svRLWsl~t--~s~~V~y~GH~~PVwdV~F~P~GyYFata---s~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 458 -SFSPDRRFLLSCSEDSSVRLWSLDT--WSCLVIYKGHLAPVWDVQFAPRGYYFATA---SHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred -eecccccceeeccCCcceeeeeccc--ceeEEEecCCCcceeeEEecCCceEEEec---CCCceeeeeecccCCchhhh
Confidence 9999999999976 99999999998 7888888887 679999999999999 99999999999987777766
Q ss_pred ccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
. ++-..+.++.|+|+..|+++++ ++||+.+|..++.|.||...| +++|||+|++|++|+ .||
T Consensus 532 a-------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 532 A-------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred c-------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 4 2333456699999999999999 999999999999999999999 999999999999999 499
Q ss_pred ecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhh
Q 000177 1703 DLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDV 1741 (1922)
Q Consensus 1703 DLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv 1741 (1922)
|+.+++++..+.+|.. +++.||.+|.+|++++.++...+
T Consensus 605 Dl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 605 DLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred EcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 9999999999999976 79999999999999965554333
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-23 Score=256.61 Aligned_cols=272 Identities=20% Similarity=0.341 Sum_probs=228.3
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
..++.+|....|+|+.|+++|++|++++.|+.|++|+..+++ ....+.+|...|+.+ .|+|++++++++ .|++|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~--~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDV--AFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeee--EECCCCcEEEEecCCceEE
Confidence 455656532889999999999999999999999999998877 778889999999999 899999999996 499999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ceEEE
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YSQIH 1651 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~vVa 1651 (1922)
|||+.. .+..++++.+| ++++|+|+|+.+++| +.|++|+|||+++++++..+. +|. +..++
T Consensus 229 iwd~~~-~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sg---s~D~tvriWd~~~~~~~~~l~---------~hs~~is~~~ 295 (456)
T KOG0266|consen 229 IWDLKD-DGRNLKTLKGHSTYVTSVAFSPDGNLLVSG---SDDGTVRIWDVRTGECVRKLK---------GHSDGISGLA 295 (456)
T ss_pred EeeccC-CCeEEEEecCCCCceEEEEecCCCCEEEEe---cCCCcEEEEeccCCeEEEeee---------ccCCceEEEE
Confidence 999943 25788999987 889999999999999 899999999999999999997 454 44499
Q ss_pred EcCCCCeEeecc-----EEEEcCCCc--ceeeeccCCCc--e-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSV--PVHRFDQFTDH--G-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk--~I~kf~gh~~~--V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
|+++|++|++++ ++||+.++. ++..+.++... + ++.|+|+|.++++++ ++||++.++.+..+.+|
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 999999999888 999999998 67888887776 5 999999999999999 59999999999999988
Q ss_pred Cce-----eEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--CceEEEEEcCCCce
Q 000177 1717 DQT-----TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--RCVLDFATERTDSF 1789 (1922)
Q Consensus 1717 ~~~-----sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--r~I~dLa~SPdds~ 1789 (1922)
... +..+++.|.+++++.. +..+.+|+..+...+..+... ..+..++|+|...+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~~-------------------d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGSE-------------------DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENL 436 (456)
T ss_pred CCcceeEecccccCCCCeEEEEeC-------------------CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCe
Confidence 772 4455778999999852 334666776665555555554 56899999999999
Q ss_pred EEEEecCCCCCccceEEEEEe
Q 000177 1790 VGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++... ...+..+++|..
T Consensus 437 ~~s~s----~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 437 IASSS----FEGDGLIRLWKY 453 (456)
T ss_pred eeecC----cCCCceEEEecC
Confidence 88653 334578899964
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=239.31 Aligned_cols=274 Identities=16% Similarity=0.219 Sum_probs=233.0
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
..++...+.+.+|. ..|+.+-|+|+-..+++++.|++|++||..+|+++..++||++.|..| +|+..|++|+++ +|
T Consensus 95 ipRp~l~~~l~g~r-~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di--~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHR-SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDI--SFDASGKYLATCSSD 171 (406)
T ss_pred CCCCCchhhhhccc-cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEE--EEecCccEEEecCCc
Confidence 34555566778999 999999999999999999999999999999999999999999999999 899999999995 48
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
-.+++||..+. .+++..+.+| .++.|-|.|.+|+++ +.|++|+.|++.++-++.+|. +|..++
T Consensus 172 l~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~---srD~tik~We~~tg~cv~t~~---------~h~ewv 238 (406)
T KOG0295|consen 172 LSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSC---SRDNTIKAWECDTGYCVKTFP---------GHSEWV 238 (406)
T ss_pred cchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeec---ccccceeEEecccceeEEecc---------CchHhE
Confidence 88999999862 4556666554 789999999999999 999999999999999999997 777776
Q ss_pred --EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecC---------------CCEEEEEe-----EE
Q 000177 1650 --IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPA---------------GNEVIINS-----EV 1701 (1922)
Q Consensus 1650 --VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPd---------------G~~LASGS-----eI 1701 (1922)
+..+.||.++++++ ++|-+.++++...+..|...+ +++|-|. |.++.+++ ++
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 89999999999999 999999999988999999998 8888763 35888888 59
Q ss_pred EecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ce
Q 000177 1702 WDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CV 1778 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I 1778 (1922)
||+.++.++.++.+|++ +.++|+|.|+||++... +.++++||-.+.....+..... -+
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-------------------Dktlrvwdl~~~~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD-------------------DKTLRVWDLKNLQCMKTLEAHEHFV 379 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec-------------------CCcEEEEEeccceeeeccCCCccee
Confidence 99999999999999999 69999999999999842 2457788877777776666533 36
Q ss_pred EEEEEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1779 LDFATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1779 ~dLa~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
..+.++.+-.++. ++..+..+++|+
T Consensus 380 t~lDfh~~~p~Vv------TGsVdqt~KvwE 404 (406)
T KOG0295|consen 380 TSLDFHKTAPYVV------TGSVDQTVKVWE 404 (406)
T ss_pred EEEecCCCCceEE------eccccceeeeee
Confidence 7777777666533 355668889987
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=230.59 Aligned_cols=260 Identities=18% Similarity=0.260 Sum_probs=214.8
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEE
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN-SSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~-tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVk 1577 (1922)
|+-.+.+|. +.|+++.|+|+|.+|+||+.|..|.+|++. ..+...++++|.++|..+ .|.+|+..|++ |.|.+|+
T Consensus 39 p~m~l~gh~-geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l--~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHK-GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMEL--HGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCc-ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEee--eeccCCCEEEEecCCceEE
Confidence 455678899 999999999999999999999999999964 344566789999999999 88999999998 5699999
Q ss_pred EeccCCCCCCcceEecccee----EEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1578 LWNASSIAGGPMHSFEGCKA----ARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh~s----VaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.||+++ +++++.+++|+. +.-+.-|. ++.++ +.|+++++||+++..+++++. ..++...++|
T Consensus 116 ~wD~~t--G~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg---sdD~t~kl~D~R~k~~~~t~~--------~kyqltAv~f 182 (338)
T KOG0265|consen 116 GWDAET--GKRIRKHKGHTSFVNSLDPSRRGPQLVCSG---SDDGTLKLWDIRKKEAIKTFE--------NKYQLTAVGF 182 (338)
T ss_pred EEeccc--ceeeehhccccceeeecCccccCCeEEEec---CCCceEEEEeecccchhhccc--------cceeEEEEEe
Confidence 999999 999999998733 33222244 44454 899999999999999999886 3467777999
Q ss_pred cCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC----eEEEEEcCCC
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF----RLLRSVPSLD 1717 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg----klL~tl~gH~ 1717 (1922)
..++..+.+++ ++||++.+...+.+.||.+.| .+..+|+|.++.+.+ ++||++-+ +++..+.+|.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 99999999999 999999999999999999999 999999999999999 69999864 4577777765
Q ss_pred c------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceE
Q 000177 1718 Q------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFV 1790 (1922)
Q Consensus 1718 ~------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~L 1790 (1922)
- -.++|+|+++.+.+++.+ ....+||......+..... ...|..+.++|...+|
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~d-------------------r~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSAD-------------------RFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPII 323 (338)
T ss_pred hhhhhhcceeeccCCCCcccccccc-------------------ceEEEeecccccEEEEcCCcceeEEEeeecCCCcEE
Confidence 4 488999999999998522 2345666665555555554 3458999999999988
Q ss_pred EEEe
Q 000177 1791 GLIT 1794 (1922)
Q Consensus 1791 AVVe 1794 (1922)
..+.
T Consensus 324 ls~~ 327 (338)
T KOG0265|consen 324 LSCS 327 (338)
T ss_pred EEec
Confidence 8764
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=244.07 Aligned_cols=229 Identities=17% Similarity=0.313 Sum_probs=200.3
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHT-KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~D-GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
-|.+..|..++.+.--. ..|..+.|+..|.+|+.|+.. |.+-||++++...+...++|...++++ .++|||++++|
T Consensus 291 LyelP~f~lih~LSis~-~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l--~YSpDgq~iaT 367 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISD-QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSL--AYSPDGQLIAT 367 (893)
T ss_pred EEecCCceEEEEeeccc-ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeE--EECCCCcEEEe
Confidence 45678888898887654 679999999999999998865 899999999999888999999999999 89999999999
Q ss_pred e-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 S-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
| .|++|+|||..+ +-|+.+|..| +.+.|+..|+.+++. +-||+|+.||+..+.+..+|..|.. -
T Consensus 368 G~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~llss---SLDGtVRAwDlkRYrNfRTft~P~p------~ 436 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLSS---SLDGTVRAWDLKRYRNFRTFTSPEP------I 436 (893)
T ss_pred ccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEEe---ecCCeEEeeeecccceeeeecCCCc------e
Confidence 5 599999999998 8899999876 679999999999998 8999999999999999999974332 2
Q ss_pred cceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC-eEEEE
Q 000177 1646 AYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF-RLLRS 1712 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg-klL~t 1712 (1922)
+-.+++..|.|.++..++ .+|++++|+.+-.+.||.++| +++|+|.|..|+++| ++||+-.. ..+.+
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence 345599999999999888 899999999999999999999 899999999999999 69998543 34455
Q ss_pred Ec-CCCceeEEEccCCCEEEEEE
Q 000177 1713 VP-SLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1713 l~-gH~~~sVaFSPdG~~LaSgs 1734 (1922)
+. .|+...++|+|+|+-|+++.
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEE
Confidence 55 35558999999999999874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=227.45 Aligned_cols=220 Identities=15% Similarity=0.246 Sum_probs=193.1
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------CceeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS------SPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg------k~l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
..+.++-.+ ..|..|+|+|.|+++|.|+-|....||++.+. +..+.+.+|++.+.++ .|.+|+++|.+|.|
T Consensus 89 K~haipl~s-~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC--~f~dD~~ilT~SGD 165 (343)
T KOG0286|consen 89 KVHAIPLPS-SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCC--RFLDDNHILTGSGD 165 (343)
T ss_pred ceeEEecCc-eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEE--EEcCCCceEecCCC
Confidence 344455556 88999999999999999999999999999754 3456789999999999 78888888888889
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.++.+||+++ ++.+..|.+| .++.++| +++.|++| +-|++.++||++.+.++++|. ++...++
T Consensus 166 ~TCalWDie~--g~~~~~f~GH~gDV~slsl~p~~~ntFvSg---~cD~~aklWD~R~~~c~qtF~-------ghesDIN 233 (343)
T KOG0286|consen 166 MTCALWDIET--GQQTQVFHGHTGDVMSLSLSPSDGNTFVSG---GCDKSAKLWDVRSGQCVQTFE-------GHESDIN 233 (343)
T ss_pred ceEEEEEccc--ceEEEEecCCcccEEEEecCCCCCCeEEec---ccccceeeeeccCcceeEeec-------ccccccc
Confidence 9999999999 8999999997 6799999 89999999 889999999999999999996 2333455
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC--Cce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--DHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
.+.|.|+|.-+++++ ++||+|..+.+..|.... .++ +++||..|++|..|. .+||.-.++.+..+.|
T Consensus 234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G 313 (343)
T KOG0286|consen 234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG 313 (343)
T ss_pred eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec
Confidence 699999999999998 999999999988887443 234 999999999999987 4999999999999999
Q ss_pred CCc--eeEEEccCCCEEEEEE
Q 000177 1716 LDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs 1734 (1922)
|.+ .++..+|||..+++++
T Consensus 314 HeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 314 HENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred cCCeeEEEEECCCCcEEEecc
Confidence 998 7999999999999984
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=236.90 Aligned_cols=248 Identities=15% Similarity=0.265 Sum_probs=214.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~ 1588 (1922)
..|++++|+.+|.+||+|+.||.++||+. +|..+.+|..|.+||.+| .|+.+|.||++++ |+++.|||..+ +..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~sl--KWnk~G~yilS~~vD~ttilwd~~~--g~~ 310 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSL--KWNKKGTYILSGGVDGTTILWDAHT--GTV 310 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEE--EEcCCCCEEEeccCCccEEEEeccC--ceE
Confidence 57999999999999999999999999997 688889999999999999 7899999999965 99999999988 667
Q ss_pred ceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeec
Q 000177 1589 MHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWN 1662 (1922)
Q Consensus 1589 l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSg 1662 (1922)
...|.-| ..|.|-.+ ..|+++ +.|+.|++|-+....++.++. +|...+ +.|+|.|.+|+++
T Consensus 311 ~q~f~~~s~~~lDVdW~~~-~~F~ts---~td~~i~V~kv~~~~P~~t~~---------GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSN-DEFATS---STDGCIHVCKVGEDRPVKTFI---------GHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred EEeeeeccCCccceEEecC-ceEeec---CCCceEEEEEecCCCcceeee---------cccCceEEEEECCCCceEEEe
Confidence 6666654 45778765 456777 889999999999888888886 565554 9999999999999
Q ss_pred c-----EEEEcCCCcceeeeccCCCce-EEEEecCC---------CEEEEEe-----EEEecCCCeEEEEEcCCCc--ee
Q 000177 1663 G-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG---------NEVIINS-----EVWDLRKFRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG---------~~LASGS-----eIWDLrTgklL~tl~gH~~--~s 1720 (1922)
+ +||......+++.|+.|...| .+.|+|.| ..+++++ ++||+..+.+++++..|.. .+
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 8 999999999999999999888 89999865 3567766 6999999999999988876 89
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
|+|+|+|+++++|. ++..+.+|+...++...+......|+.++|+..|.++++..
T Consensus 458 vafS~~g~ylAsGs-------------------~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 458 VAFSPNGRYLASGS-------------------LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred EEecCCCcEEEecC-------------------CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEe
Confidence 99999999999995 44566777778888888887778899999999999988764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=217.02 Aligned_cols=226 Identities=16% Similarity=0.274 Sum_probs=188.9
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-c
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-S 1572 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-s 1572 (1922)
.+++.+++++.. ++.|+.+...||++.||+++.. .|++||+++++ ++.+|.+|+..|+.| .|..+|+.+.+| .
T Consensus 28 ~tG~C~rTiqh~-dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV--gF~~dgrWMyTgse 103 (311)
T KOG0315|consen 28 LTGICSRTIQHP-DSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV--GFQCDGRWMYTGSE 103 (311)
T ss_pred hcCeEEEEEecC-ccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE--EEeecCeEEEecCC
Confidence 455667777544 4999999999999999999875 69999999875 588999999999999 889999999996 4
Q ss_pred CCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
||+++|||++. ..+-+.|+ .++++..+|+...|++| ..+|.|++||+.+..+...+-+. ..-....
T Consensus 104 Dgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~---dqsg~irvWDl~~~~c~~~liPe------~~~~i~s 172 (311)
T KOG0315|consen 104 DGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISG---DQSGNIRVWDLGENSCTHELIPE------DDTSIQS 172 (311)
T ss_pred CceEEEEeccC--cccchhccCCCCcceEEecCCcceEEee---cCCCcEEEEEccCCccccccCCC------CCcceee
Confidence 99999999998 44444443 36999999999899998 88899999999988776655411 1334555
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCC------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC-eEEE
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNS------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF-RLLR 1711 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtg------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg-klL~ 1711 (1922)
++..|||.+++... ++|++-+. .++++|+.|+..+ .+.|||++++|+++| +||+..++ ++-.
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 99999999998655 89998764 4788999999988 999999999999999 69999987 7777
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
++.+|.. |..+||.+|.||++++.+
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCCC
Confidence 8889966 899999999999999644
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-23 Score=244.04 Aligned_cols=271 Identities=14% Similarity=0.206 Sum_probs=215.1
Q ss_pred CceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
.-+.++++.||. ..|+++.|.| .+.+|++|+.|+.|+||++.. +.++++|.||..+|..+ .|+++|.-++|+ -|
T Consensus 203 Pkk~~~~~~gH~-kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~--~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 203 PKKLSHNLSGHT-KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDA--SFNNCGTSFLSASFD 279 (503)
T ss_pred cHhheeeccCCc-cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhh--hccccCCeeeeeecc
Confidence 345678899999 9999999999 899999999999999999976 89999999999999999 899999988885 59
Q ss_pred CcEEEeccCCCCCCcceEecc---ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc--
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG---CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY-- 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-- 1647 (1922)
+.|++||+++ |+++..|.. .+|+.|+|++ +.|++| +.|+.|+.||+++++.++.+. .|-.
T Consensus 280 ~~lKlwDtET--G~~~~~f~~~~~~~cvkf~pd~~n~fl~G---~sd~ki~~wDiRs~kvvqeYd---------~hLg~i 345 (503)
T KOG0282|consen 280 RFLKLWDTET--GQVLSRFHLDKVPTCVKFHPDNQNIFLVG---GSDKKIRQWDIRSGKVVQEYD---------RHLGAI 345 (503)
T ss_pred eeeeeecccc--ceEEEEEecCCCceeeecCCCCCcEEEEe---cCCCcEEEEeccchHHHHHHH---------hhhhhe
Confidence 9999999999 999988865 3899999988 788888 889999999999999888775 3333
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEe---E--EEecCC---CeEEEE
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINS---E--VWDLRK---FRLLRS 1712 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGS---e--IWDLrT---gklL~t 1712 (1922)
..+.|-++|+.+++.+ ++|+.+.+.+++....+.... ++..||++++++.=+ . ++.+.. ...-+.
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~ 425 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR 425 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh
Confidence 3499999999999887 999999988776554444433 899999999988766 1 333321 233455
Q ss_pred EcCCCc----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCC
Q 000177 1713 VPSLDQ----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTD 1787 (1922)
Q Consensus 1713 l~gH~~----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdd 1787 (1922)
+.||.. +.|.|||||.+|++|..+ ..+.+||-.+-+.+..+... ..+..+.|+|..
T Consensus 426 feGh~vaGys~~v~fSpDG~~l~SGdsd-------------------G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 426 FEGHSVAGYSCQVDFSPDGRTLCSGDSD-------------------GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred hcceeccCceeeEEEcCCCCeEEeecCC-------------------ccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 677766 799999999999999422 23445555555555555554 568899999965
Q ss_pred c-eEEEEecCCCCCccceEEEEE
Q 000177 1788 S-FVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1788 s-~LAVVe~dds~d~dSsVRLyE 1809 (1922)
. .+|. ...++.|++|+
T Consensus 487 ~Skvat------~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVAT------CGWDGLIKIWD 503 (503)
T ss_pred cceeEe------cccCceeEecC
Confidence 5 4443 33567888884
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=245.72 Aligned_cols=221 Identities=23% Similarity=0.367 Sum_probs=194.6
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS-NSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl-~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
..+++.+|. ..|++++|+|+|++|++|+.|++|+|||+ ..+..++++.+|...|+++ +|+|+++++++| .|++|+
T Consensus 195 ~~~~l~~h~-~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~--~f~p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 195 LLRELSGHT-RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSV--AFSPDGNLLVSGSDDGTVR 271 (456)
T ss_pred hhccccccc-cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEE--EecCCCCEEEEecCCCcEE
Confidence 677778999 99999999999999999999999999999 6668999999999999999 899999999995 599999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc--eeeeeccccccccCCCC-cceEE
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQ--LEAKLSDTSVNLTGRGH-AYSQI 1650 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk--~i~tL~d~s~~~~~~gh-~~~vV 1650 (1922)
|||+++ ++++..+.+| .+++|++++++|+++ +.|+.|+|||+.++. +...+.. .... ....+
T Consensus 272 iWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~ 340 (456)
T KOG0266|consen 272 IWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSA---SYDGTIRVWDLETGSKLCLKLLSG------AENSAPVTSV 340 (456)
T ss_pred EEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEc---CCCccEEEEECCCCceeeeecccC------CCCCCceeEE
Confidence 999998 8999999886 789999999999998 889999999999999 4555541 0112 35569
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce----EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG----GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V----sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
.|+|++.+++++. ++||++.++++..+.+|...+ +..+++.|.++++|+ .+||+.++..+..+.+|
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 9999999999887 999999999999999998753 556688999999999 49999999999999999
Q ss_pred -Cc--eeEEEccCCCEEEEEE
Q 000177 1717 -DQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1717 -~~--~sVaFSPdG~~LaSgs 1734 (1922)
.. ..+.|+|...++++..
T Consensus 421 ~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 421 SKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred CCCceeccccCCCcCeeeecC
Confidence 44 6899999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=229.11 Aligned_cols=238 Identities=19% Similarity=0.302 Sum_probs=204.3
Q ss_pred ecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEE
Q 000177 1479 STYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1479 ~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq 1558 (1922)
..+|..+|..+.| ...+..+.+|..|. ++|.+++|+.+|++|++|+.|+++.|||..++.....|.-|..+-..|
T Consensus 250 LatG~~~G~~riw---~~~G~l~~tl~~Hk-gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV- 324 (524)
T KOG0273|consen 250 LATGSEDGEARIW---NKDGNLISTLGQHK-GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV- 324 (524)
T ss_pred EEEeecCcEEEEE---ecCchhhhhhhccC-CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce-
Confidence 4455554443322 45777888999999 999999999999999999999999999999999999999999887788
Q ss_pred eeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1559 SHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1559 ~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.|-.+..+..++.|+.|+|+.+.. ..|+.+|.+| .++.|+|.|..|+++ +.|++++||.+....+...+.
T Consensus 325 -dW~~~~~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~alk~n~tg~LLaS~---SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 325 -DWQSNDEFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVNALKWNPTGSLLASC---SDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred -EEecCceEeecCCCceEEEEEecC--CCcceeeecccCceEEEEECCCCceEEEe---cCCCeeEeeecCCCcchhhhh
Confidence 566676777777899999999987 7899999987 789999999999999 999999999998888877775
Q ss_pred cccccccCCCCcce--EEEEcCCC---------CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1635 DTSVNLTGRGHAYS--QIHFSPSD---------TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1635 d~s~~~~~~gh~~~--vVaFSPdG---------~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
.|... .+.|+|+| ..+++++ ++||+..+.++++|.+|..+| +++|+|+|.|+++
T Consensus 399 ---------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 399 ---------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred ---------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 55544 48888876 3455555 999999999999999999999 9999999999999
Q ss_pred Ee-----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEcc
Q 000177 1698 NS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~ 1736 (1922)
|+ .||+.+++++++++.+... ..++||.+|+.|.+...+
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred cCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 99 4999999999999998777 899999999999887533
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=220.16 Aligned_cols=238 Identities=20% Similarity=0.309 Sum_probs=202.4
Q ss_pred cccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe
Q 000177 1480 TYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS 1559 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~ 1559 (1922)
..||.+...+.|+. +...+..-++++|+ +.|..+.|.+|++.|++++.|++|+.||+++|+..+.+++|...|+++
T Consensus 63 aSgG~Dr~I~LWnv-~gdceN~~~lkgHs-gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~-- 138 (338)
T KOG0265|consen 63 ASGGSDRAIVLWNV-YGDCENFWVLKGHS-GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL-- 138 (338)
T ss_pred eecCCcceEEEEec-cccccceeeecccc-ceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec--
Confidence 34455444444443 55566667788999 999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEE-e-cCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1560 HLSGETQLLLS-S-SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1560 afSpDG~lLaS-S-sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
..+.-|..+++ + .|++++|||+++ ..+++++.. .+++.|.-++..+++| +-|+.|++||++.+....++.
T Consensus 139 ~p~rrg~~lv~SgsdD~t~kl~D~R~--k~~~~t~~~kyqltAv~f~d~s~qv~sg---gIdn~ikvWd~r~~d~~~~ls 213 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDGTLKLWDIRK--KEAIKTFENKYQLTAVGFKDTSDQVISG---GIDNDIKVWDLRKNDGLYTLS 213 (338)
T ss_pred CccccCCeEEEecCCCceEEEEeecc--cchhhccccceeEEEEEecccccceeec---cccCceeeeccccCcceEEee
Confidence 55556666665 3 599999999998 677777743 4889999999999999 889999999999999999886
Q ss_pred cccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCC----CcceeeeccCCCce-----EEEEecCCCEEEEE
Q 000177 1635 DTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRN----SVPVHRFDQFTDHG-----GGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1635 d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrt----gk~I~kf~gh~~~V-----sVaFSPdG~~LASG 1698 (1922)
||...+ +..+|+|.++++.+ ++||++- .+++..|.+|...+ .++|+|++.++..|
T Consensus 214 ---------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag 284 (338)
T KOG0265|consen 214 ---------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG 284 (338)
T ss_pred ---------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccc
Confidence 777766 89999999999988 9999994 34688898876443 78999999999988
Q ss_pred e-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1699 S-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1699 S-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+ -+||..+...+..++||.. +++.|+|...+|.+++.
T Consensus 285 s~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 285 SADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred cccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 8 3999998899999999987 89999999999998853
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=246.96 Aligned_cols=275 Identities=15% Similarity=0.186 Sum_probs=202.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----C----ceeeeccCCCCeeEEEeeecC-CCcEEEEe-cC
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----S----PLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SS 1573 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----k----~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sD 1573 (1922)
+..|. +.|++++|+|+|++|++|+.|++|+||++.+. . ....+. +...|.++ .|++ ++.+|+++ .|
T Consensus 479 ~~~~~-~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l--~~~~~~~~~las~~~D 554 (793)
T PLN00181 479 LLNSS-NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGI--CWNSYIKSQVASSNFE 554 (793)
T ss_pred ccCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeE--EeccCCCCEEEEEeCC
Confidence 34588 99999999999999999999999999997542 1 122333 35678999 6665 46777775 59
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++|+|||+.+ ++.+..+.+| ++++|+| ++.+|++| +.|++|++||++++.++.++. ......
T Consensus 555 g~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~iWd~~~~~~~~~~~--------~~~~v~ 621 (793)
T PLN00181 555 GVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKLWSINQGVSIGTIK--------TKANIC 621 (793)
T ss_pred CeEEEEECCC--CeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEEEECCCCcEEEEEe--------cCCCeE
Confidence 9999999987 7777788765 7899997 78999999 889999999999998888775 123445
Q ss_pred EEEEc-CCCCeEeecc-----EEEEcCCCc-ceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC------CeE
Q 000177 1649 QIHFS-PSDTMLLWNG-----ILWDRRNSV-PVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK------FRL 1709 (1922)
Q Consensus 1649 vVaFS-PdG~lLaSgg-----rLWDlrtgk-~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT------gkl 1709 (1922)
++.|+ ++|.+|++++ ++||+++++ ++..+.+|...+ ++.|. ++.+|++++ +|||+++ +++
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 58884 5788999877 999999876 678888999888 88997 678888888 5999974 367
Q ss_pred EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceee---eeccCCceEEEEEc
Q 000177 1710 LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA---TIPVDRCVLDFATE 1784 (1922)
Q Consensus 1710 L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia---Tidvkr~I~dLa~S 1784 (1922)
++++.+|.. +++.|+|+|.+|++++.++...+|... .+ .....+.......+. .......|.+++|+
T Consensus 701 l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~------~~--~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 701 LHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA------FP--MPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772 (793)
T ss_pred eEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC------CC--CceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence 888999877 789999999999999654433332110 00 000001100011111 11223459999999
Q ss_pred CCCceEEEEecCCCCCccceEEEEEe
Q 000177 1785 RTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1785 Pdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
|++..+++.. .++.+++|++
T Consensus 773 ~~~~~lva~~------~dG~I~i~~~ 792 (793)
T PLN00181 773 GQSSTLVAAN------STGNIKILEM 792 (793)
T ss_pred CCCCeEEEec------CCCcEEEEec
Confidence 9999877653 3467899974
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=236.45 Aligned_cols=223 Identities=14% Similarity=0.251 Sum_probs=186.3
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEE-ecCCcEEEe
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLS-SSSQDVHLW 1579 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaS-SsDgtVkLW 1579 (1922)
..+..|. +.|+++.|+++|.+++||+.+|.||+|+.+-.. ++.+.+ |...|+++ +|+|+...+++ |+|++|+||
T Consensus 132 tilQaHD-s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdl--afSpnDskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 132 TILQAHD-SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDL--AFSPNDSKFLTCSDDGTIKIW 207 (464)
T ss_pred HHhhhhc-ccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhhee--ccCCCCceeEEecCCCeEEEE
Confidence 3457899 999999999999999999999999999985444 455554 45999999 88987776666 569999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEc
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFS 1653 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFS 1653 (1922)
|... .+....+.+| +++.|||....|+++ +.|+.|++||.+++.|+.++. +|...+ +.|+
T Consensus 208 df~~--~kee~vL~GHgwdVksvdWHP~kgLiasg---skDnlVKlWDprSg~cl~tlh---------~HKntVl~~~f~ 273 (464)
T KOG0284|consen 208 DFRM--PKEERVLRGHGWDVKSVDWHPTKGLIASG---SKDNLVKLWDPRSGSCLATLH---------GHKNTVLAVKFN 273 (464)
T ss_pred eccC--CchhheeccCCCCcceeccCCccceeEEc---cCCceeEeecCCCcchhhhhh---------hccceEEEEEEc
Confidence 9987 6666777876 899999999999998 899999999999999999885 666665 9999
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCC-EEEEEe-----EEEecCCCeEEEEEc-CCCc--
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVWDLRKFRLLRSVP-SLDQ-- 1718 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIWDLrTgklL~tl~-gH~~-- 1718 (1922)
|++++|++++ +++|+++-+.+.+|.+|...+ ++.|||-.. .+.+|+ ..|.+...+++..++ +|+.
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI 353 (464)
T ss_pred CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccce
Confidence 9999999999 999999999999999999988 999999654 555555 378887666666665 6665
Q ss_pred eeEEEccCCCEEEEEEccCchhhh
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
++++|+|-|.+|++++++....++
T Consensus 354 wsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 354 WSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred eeeeccccceeEeecCCCcceeee
Confidence 899999999999998655544443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-21 Score=210.17 Aligned_cols=253 Identities=13% Similarity=0.216 Sum_probs=205.2
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----ee
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KA 1597 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~s 1597 (1922)
-+|+|+|+|.+|++|...+|.|.++++-..+.|+.+ ...|++++|+++....|++||+++....|+.+|.+| ..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrL--eiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRL--EITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeE--EEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 489999999999999999999999999888999999 889999999999999999999998666689999886 78
Q ss_pred EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCc
Q 000177 1598 ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSV 1672 (1922)
Q Consensus 1598 VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk 1672 (1922)
+.|.-+|+.+++| +.||+++|||++.-.+...+. +..+++.+..+|+...|+++. ++||++...
T Consensus 89 VgF~~dgrWMyTg---seDgt~kIWdlR~~~~qR~~~--------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 89 VGFQCDGRWMYTG---SEDGTVKIWDLRSLSCQRNYQ--------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred EEEeecCeEEEec---CCCceEEEEeccCcccchhcc--------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 9999999999999 999999999999977766665 345666799999988888766 999999887
Q ss_pred ceeeeccCC-Cce-EEEEecCCCEEEEEe-----EEEecCCC------eEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1673 PVHRFDQFT-DHG-GGGFHPAGNEVIINS-----EVWDLRKF------RLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1673 ~I~kf~gh~-~~V-sVaFSPdG~~LASGS-----eIWDLrTg------klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+.+.+.... ..+ ++..+|+|.+++.+. -+|++-+. +++..++.|.. ..+.+||++++|++++.+.
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence 666554332 344 899999999998877 29998653 46677788877 6889999999999985333
Q ss_pred chhhhhhhcccccccCCcceEEEEecCCC-ceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1738 LEDVMSAVHTRRVKHPLFAAFRTVDAINY-SDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1738 ~~dv~s~lh~rr~ksp~~ssFrt~Da~dy-s~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
..++|...++ +.-..++. .+=++|.+||.++.||...+ .+..+|+|++..
T Consensus 238 -------------------tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas------sd~~~rlW~~~~ 289 (311)
T KOG0315|consen 238 -------------------TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS------SDHTARLWDLSA 289 (311)
T ss_pred -------------------eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC------CCCceeeccccc
Confidence 3455655555 33333333 34599999999999988653 347899998743
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=224.50 Aligned_cols=229 Identities=19% Similarity=0.331 Sum_probs=203.8
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
+.|.+.++...+.|+||. +.|..++|+..|++|+++|.|-.+++||.++ .++++.+.+|...|.++ .|-|.|.+|+
T Consensus 133 kv~D~~tg~~e~~LrGHt-~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V--~f~P~gd~il 209 (406)
T KOG0295|consen 133 KVFDTETGELERSLRGHT-DSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSV--FFLPLGDHIL 209 (406)
T ss_pred EEEEccchhhhhhhhccc-cceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeE--EEEecCCeee
Confidence 345566677789999999 8899999999999999999999999999987 57888899999999999 8889999999
Q ss_pred Ee-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1570 SS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1570 SS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
++ .|.+|+.|++.+ +-++.+|.+| +.+..+.||..++++ +.|.++++|-+.+++|...+. .+.
T Consensus 210 S~srD~tik~We~~t--g~cv~t~~~h~ewvr~v~v~~DGti~As~---s~dqtl~vW~~~t~~~k~~lR-------~hE 277 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDT--GYCVKTFPGHSEWVRMVRVNQDGTIIASC---SNDQTLRVWVVATKQCKAELR-------EHE 277 (406)
T ss_pred ecccccceeEEeccc--ceeEEeccCchHhEEEEEecCCeeEEEec---CCCceEEEEEeccchhhhhhh-------ccc
Confidence 95 499999999999 8999999987 678888899999999 899999999999998877664 356
Q ss_pred CcceEEEEcCC---------------CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----
Q 000177 1645 HAYSQIHFSPS---------------DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1645 h~~~vVaFSPd---------------G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
|.+.+++|-|. ++++.+++ ++||+.+|.++.++.+|.++| .++|||.|+||+++.
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence 77777888763 24666766 999999999999999999999 999999999999998
Q ss_pred -EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1700 -EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
++||+++.++++++..|.. +++.|+.+-.++++|+
T Consensus 358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEEEEeccceeeeccCCCcceeEEEecCCCCceEEecc
Confidence 5999999999999998876 8999999999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-21 Score=212.22 Aligned_cols=273 Identities=17% Similarity=0.288 Sum_probs=216.5
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--eccCCCCeeEEEeeecCC-CcEEEE-ecCCcEE
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpD-G~lLaS-SsDgtVk 1577 (1922)
+.+++|. ..|.+++|+-+|..|++|+.|+++++|+++....... +.+|++.|-.++ |+|. ..++++ +.|.+|+
T Consensus 14 r~~~~~~-~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~--w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHV-QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLC--WDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhh-hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhhe--eCCCCCcceEEecCCceEE
Confidence 4567899 9999999999999999999999999999988765544 489999999994 4443 334444 7899999
Q ss_pred EeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1578 LWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
+||++. ++++..... ...+.|+|+|.+++.+ +.|..|.+.|.++.+.....+ .....+-++|+.
T Consensus 91 ~wd~r~--~k~~~~i~~~~eni~i~wsp~g~~~~~~---~kdD~it~id~r~~~~~~~~~--------~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 91 IWDIRS--GKCTARIETKGENINITWSPDGEYIAVG---NKDDRITFIDARTYKIVNEEQ--------FKFEVNEISWNN 157 (313)
T ss_pred EEEecc--CcEEEEeeccCcceEEEEcCCCCEEEEe---cCcccEEEEEecccceeehhc--------ccceeeeeeecC
Confidence 999998 888877643 4678999999999999 889999999999988776654 223344488887
Q ss_pred CCCeEe-ecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeE
Q 000177 1655 SDTMLL-WNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTI 1721 (1922)
Q Consensus 1655 dG~lLa-Sgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sV 1721 (1922)
++.+++ +.| .|-....-+++..++.|.... ++.|+|+|+|+|+|+ .+||+...-+++.+.-++- ..+
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl 237 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL 237 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence 776655 555 677777889999999998655 999999999999999 4999998888888887765 899
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCC--
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQE-- 1799 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~-- 1799 (1922)
.||.+|++|++++.+-..+ +-+..+...+..+....+.+.++|+|+...||-...+..+
T Consensus 238 SFS~dg~~lASaSEDh~ID-------------------IA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~ 298 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFID-------------------IAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDS 298 (313)
T ss_pred EeccCcceeeccCccceEE-------------------eEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCcc
Confidence 9999999999995333222 2334456667777788889999999999999987644322
Q ss_pred -CccceEEEEE
Q 000177 1800 -DMFSSARIYE 1809 (1922)
Q Consensus 1800 -d~dSsVRLyE 1809 (1922)
-..+.+++|-
T Consensus 299 ~reag~vKiFG 309 (313)
T KOG1407|consen 299 NREAGTVKIFG 309 (313)
T ss_pred ccccceeEEec
Confidence 2235677774
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=236.03 Aligned_cols=291 Identities=18% Similarity=0.227 Sum_probs=221.3
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S 1571 (1922)
|.|.-...+..|.+|. ++|..+.|+|++.++++|+.|-.|+||+..+.+++.++.||-..|..+ .|++.-.+|++ |
T Consensus 36 WDYRM~tli~rFdeHd-GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~--~FHheyPWIlSAS 112 (1202)
T KOG0292|consen 36 WDYRMGTLIDRFDEHD-GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV--FFHHEYPWILSAS 112 (1202)
T ss_pred ehhhhhhHHhhhhccC-CccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe--eccCCCceEEEcc
Confidence 3455556677788999 999999999999999999999999999999999999999999999999 88999999999 5
Q ss_pred cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee---------------
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK--------------- 1632 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t--------------- 1632 (1922)
+|.||+||++++ .+++..+.|| .|..|||....++++ +-|.+|+|||+..-+....
T Consensus 113 DDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhptEDlIVSa---SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 113 DDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPTEDLIVSA---SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred CCCeEEEEeccC--CceEEEEecCceEEEeeccCCccceEEEe---cccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 699999999998 8999999997 578999999999999 8999999999863111100
Q ss_pred ---ec--cccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCc--ceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1633 ---LS--DTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSV--PVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1633 ---L~--d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk--~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
|. |........||...+ ++|+|+-.+|++++ ++|.....+ .+.+..+|.+.| ++.|||..+.|++
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILS 267 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEe
Confidence 00 111122224565544 99999999999999 899988655 567788999999 9999999999999
Q ss_pred Ee-----EEEecCCCeEEEEEcC-CCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccC---------CcceEEEE
Q 000177 1698 NS-----EVWDLRKFRLLRSVPS-LDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHP---------LFAAFRTV 1761 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~g-H~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp---------~~ssFrt~ 1761 (1922)
+| +|||+...+.++++.- ++. |.++-+|..+.++++. +.+-.++. +..+|+.+. ....++.+
T Consensus 268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFk-leRErpa~~v~~n~LfYvkd~~i~~~ 345 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFK-LERERPAYAVNGNGLFYVKDRFIRSY 345 (1202)
T ss_pred cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEE-EcccCceEEEcCCEEEEEccceEEee
Confidence 99 5999999999999963 333 9999999999999883 33322221 111121111 12233444
Q ss_pred ecCCCceeeeeccC------CceEEEEEcCCCceEEEE
Q 000177 1762 DAINYSDIATIPVD------RCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1762 Da~dys~IaTidvk------r~I~dLa~SPdds~LAVV 1793 (1922)
|-.+-++......+ .+.+.++++|....+.+.
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 44443333333332 357788999977655554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=202.69 Aligned_cols=226 Identities=23% Similarity=0.377 Sum_probs=193.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
....+....+..|. ..++++.|+|++++|++++.||.|++||+.+++....+..|...|.++ .|++++++++++. |
T Consensus 38 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~ 114 (289)
T cd00200 38 LETGELLRTLKGHT-GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV--AFSPDGRILSSSSRD 114 (289)
T ss_pred eeCCCcEEEEecCC-cceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE--EEcCCCCEEEEecCC
Confidence 34455677788898 899999999999999999999999999999988889999999999999 8899999999977 9
Q ss_pred CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
+.|.+||+.+ ++++..+.. +.++.|+|++.+++++ +.|+.|++||+++++.+..+. .+......
T Consensus 115 ~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~ 182 (289)
T cd00200 115 KTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPDGTFVASS---SQDGTIKLWDLRTGKCVATLT-------GHTGEVNS 182 (289)
T ss_pred CeEEEEECCC--cEEEEEeccCCCcEEEEEEcCcCCEEEEE---cCCCcEEEEEccccccceeEe-------cCccccce
Confidence 9999999986 666666664 4789999999988887 668999999999888877775 12223555
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+.|+|+++.+++++ ++||+++++.+..+..|...+ ++.|+|++.++++++ .+||+.+++.+..+..|..
T Consensus 183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 262 (289)
T cd00200 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN 262 (289)
T ss_pred EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC
Confidence 99999998777666 999999999999998888777 999999999999887 4999999999999988765
Q ss_pred --eeEEEccCCCEEEEEEc
Q 000177 1719 --TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~ 1735 (1922)
.++.|+|++.+++++..
T Consensus 263 ~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 263 SVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred cEEEEEECCCCCEEEEecC
Confidence 79999999999998853
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=232.67 Aligned_cols=255 Identities=15% Similarity=0.270 Sum_probs=218.6
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
..-+ ..|..++|+|.-.+|+++-..|.|++||..-+.++..|..|.++|..| .|+|+..++++| +|.+|+||+..+
T Consensus 6 EskS-sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv--~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 6 ESKS-SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGV--DFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hccc-ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCcccee--eecCCCCeEEecCCccEEEEEeccc
Confidence 3344 779999999999999999999999999999999999999999999999 899999999995 699999999998
Q ss_pred CCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1584 IAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1584 ~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
.+|+.++.|| +.+.||+.--+|+++ ++|.+|+||+..+++++..+. +|+|-+.+..|+|...++
T Consensus 83 --rrclftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWNwqsr~~iavlt-------GHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWNWQSRKCIAVLT-------GHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred --ceehhhhccccceeEEeeccCCCceEEEc---cCCCeEEEEeccCCceEEEEe-------cCceEEEeeccCCccceE
Confidence 8999999997 789999999999999 999999999999999999986 677888889999999999
Q ss_pred eecc-----EEEEcCC--------C-------------------cc--eeeeccCCCce-EEEEecCCCEEEEEe-----
Q 000177 1660 LWNG-----ILWDRRN--------S-------------------VP--VHRFDQFTDHG-GGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1660 aSgg-----rLWDlrt--------g-------------------k~--I~kf~gh~~~V-sVaFSPdG~~LASGS----- 1699 (1922)
++++ ++||+.- + .. .+.+.||...| -++|||.-..|++|+
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 9999 9999862 1 01 13457788778 889999999999999
Q ss_pred EEEecCCCe--EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-
Q 000177 1700 EVWDLRKFR--LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV- 1774 (1922)
Q Consensus 1700 eIWDLrTgk--lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv- 1774 (1922)
++|-+...+ .+.+..||.+ .++-|+|..+.|.+.+ -+.+|++||......+.++.-
T Consensus 231 KlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSns-------------------EDksirVwDm~kRt~v~tfrre 291 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS-------------------EDKSIRVWDMTKRTSVQTFRRE 291 (1202)
T ss_pred eEEEeccccceeehhhhcccCCcceEEecCccceeEecC-------------------CCccEEEEecccccceeeeecc
Confidence 588886543 3456778877 7999999999999874 234689999888888888743
Q ss_pred CCceEEEEEcCCCceEEEE
Q 000177 1775 DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1775 kr~I~dLa~SPdds~LAVV 1793 (1922)
..+.|-++.+|..+.+|..
T Consensus 292 ndRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 292 NDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred CCeEEEEEecCCcceeeee
Confidence 4468889999988887754
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-20 Score=223.76 Aligned_cols=265 Identities=15% Similarity=0.241 Sum_probs=227.6
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--CCcEEEecc
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--SQDVHLWNA 1581 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--DgtVkLWDl 1581 (1922)
|.... ..|+|++|++.-+.|++|-..|...+|.+....+++.+.-...+|..+ +|+..|.+|+.++ -|.+-||++
T Consensus 261 ln~~~-~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~--~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 261 LNQNS-SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTV--SFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred ecccc-cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEE--EecccCCEEEEcCCccceEEEEEe
Confidence 33444 679999999999999999999999999999999999988778899999 8888999999965 569999999
Q ss_pred CCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCC
Q 000177 1582 SSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPS 1655 (1922)
Q Consensus 1582 ~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPd 1655 (1922)
++ ...+...++| ++++++|||+++++| +.||.|+|||.++|-|..+|. .|...+ ++|+..
T Consensus 338 qs--EsYVlKQQgH~~~i~~l~YSpDgq~iaTG---~eDgKVKvWn~~SgfC~vTFt---------eHts~Vt~v~f~~~ 403 (893)
T KOG0291|consen 338 QS--ESYVLKQQGHSDRITSLAYSPDGQLIATG---AEDGKVKVWNTQSGFCFVTFT---------EHTSGVTAVQFTAR 403 (893)
T ss_pred ec--cceeeeccccccceeeEEECCCCcEEEec---cCCCcEEEEeccCceEEEEec---------cCCCceEEEEEEec
Confidence 98 5556666666 899999999999999 999999999999999999997 455444 999999
Q ss_pred CCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCCc--ee
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~~--~s 1720 (1922)
|+.+++.+ +.||+...+..++|......- +++..|.|..++.|+ .||+++||+++..+.||.. .+
T Consensus 404 g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG 483 (893)
T ss_pred CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee
Confidence 99999887 999999999999998776544 899999999999998 3999999999999999988 78
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-CceeeeeccCCceEEEEEcCCCceEEEEecCCCC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-YSDIATIPVDRCVLDFATERTDSFVGLITMDDQE 1799 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-ys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~ 1799 (1922)
++|+|.|..|++++ ++.+++.|+..+ ...+.++++...+..+++.|+|..+||...
T Consensus 484 l~f~~~~~~LaS~S-------------------WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTl---- 540 (893)
T KOG0291|consen 484 LSFSPDGSLLASGS-------------------WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATL---- 540 (893)
T ss_pred eEEccccCeEEecc-------------------ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEe----
Confidence 99999999999985 455677777654 345677888889999999999999998853
Q ss_pred CccceEEEEEe
Q 000177 1800 DMFSSARIYEI 1810 (1922)
Q Consensus 1800 d~dSsVRLyEV 1810 (1922)
++.+.+|++
T Consensus 541 --dgqItf~d~ 549 (893)
T KOG0291|consen 541 --DGQITFFDI 549 (893)
T ss_pred --cceEEEEEh
Confidence 345666654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=211.45 Aligned_cols=272 Identities=18% Similarity=0.262 Sum_probs=209.8
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------C------CceeeeccCCCCeeEEEeeecC
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS------------S------SPLESCTSHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t------------g------k~l~tL~gHss~VtsLq~afSp 1563 (1922)
..+..|+ +++.+.+||+||.+++|||.|..|||+|++. | -.++++..|...|+++ .|+|
T Consensus 106 ~ylt~HK-~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l--~FHP 182 (430)
T KOG0640|consen 106 KYLTSHK-SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL--DFHP 182 (430)
T ss_pred EEEeecc-cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce--eecc
Confidence 3467899 9999999999999999999999999999851 1 2367889999999999 8999
Q ss_pred CCcEEEEec-CCcEEEeccCCCCCC-cceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1564 ETQLLLSSS-SQDVHLWNASSIAGG-PMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1564 DG~lLaSSs-DgtVkLWDl~t~~gk-~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
...+|++++ |++|++||+.....+ ....|+ .++++.|||.|.+++.| +...++++||+.|.+|...-.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg---TdHp~~rlYdv~T~Qcfvsan---- 255 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG---TDHPTLRLYDVNTYQCFVSAN---- 255 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe---cCCCceeEEeccceeEeeecC----
Confidence 999999965 999999999762111 112233 35899999999999998 888999999999998866543
Q ss_pred cccCCCCcc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC--ce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1639 NLTGRGHAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD--HG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1639 ~~~~~gh~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
+..+|.. ..+.++++|++.++++ +|||--+++|+.+|....+ .| +..|..||+||++.+ ++|.
T Consensus 256 --Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 256 --PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred --cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 2234554 4499999999999998 9999999999999965433 23 889999999999998 5999
Q ss_pred cCCCeEEEEEcCCCc-------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec--c
Q 000177 1704 LRKFRLLRSVPSLDQ-------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP--V 1774 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~-------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid--v 1774 (1922)
+.+++++.++.|... +...||.+..|++.--. ...++..||+.+-..+.... .
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE------------------as~slcsWdaRtadr~~l~slgH 395 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE------------------ASNSLCSWDARTADRVALLSLGH 395 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc------------------ccCceeeccccchhhhhhcccCC
Confidence 999999999986522 57789998888875410 22456677776654443333 3
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1775 DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1775 kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
...+..+.-+|.+.-+... ..|-..|.|-
T Consensus 396 n~a~R~i~HSP~~p~FmTc------sdD~raRFWy 424 (430)
T KOG0640|consen 396 NGAVRWIVHSPVEPAFMTC------SDDFRARFWY 424 (430)
T ss_pred CCCceEEEeCCCCCceeee------cccceeeeee
Confidence 4457777778887755433 2335677774
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=209.91 Aligned_cols=285 Identities=15% Similarity=0.159 Sum_probs=219.1
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccC
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNAS 1582 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~ 1582 (1922)
|+||. .+++.++|+.+|.+|+++++|.++.||-..+|+.+-++.||++.|+|+ ..+.+.+.+++| .|.+++|||+.
T Consensus 6 l~GHE-RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~--Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 6 LQGHE-RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCC--DIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccCc-cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEE--EecCCcceeeeccccceeEEEEcC
Confidence 67999 999999999999999999999999999999999999999999999999 666788899996 59999999999
Q ss_pred CCCCCcceEecc---ceeEEEcCCCCEEEEeecC--CCCCeEEEEECCCC-------ceeeeeccccccccCCCCcceEE
Q 000177 1583 SIAGGPMHSFEG---CKAARFSNSGNLFAALPTE--TSDRGILLYDIQTY-------QLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1583 t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~--S~DgtIrIWDlrTg-------k~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
+ ++++.+++- ++.+.|+++|++++.+... +.-+.|.+||++.. .+...+. .......++
T Consensus 83 t--Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-------t~~skit~a 153 (327)
T KOG0643|consen 83 T--GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-------TPDSKITSA 153 (327)
T ss_pred C--CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-------CCccceeee
Confidence 9 899888864 5889999999988876322 24467999999843 3333333 233455669
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCc-ceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSV-PVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk-~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
-|.|-+++|+++. ..||+++|+ .+..-..|...| .++|+|+..+++++| ++||+++.++++++.....
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P 233 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP 233 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc
Confidence 9999999999887 899999985 566667788888 999999999999999 5999999999999985544
Q ss_pred -eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecC
Q 000177 1719 -TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMD 1796 (1922)
Q Consensus 1719 -~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~d 1796 (1922)
++.+++|..++++.+...+-.++... ......+.. ++++...-..|..+.. -.+|+.++++|+|+..+
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT---~~r~GKFEA--rFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs----- 303 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTT---STRAGKFEA--RFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS----- 303 (327)
T ss_pred ccceecccccceEEecCCceeeeeeee---cccccchhh--hHHHHHHHHHhccccccccCcceeEECCCCcccc-----
Confidence 89999998888887754443333211 000010111 1122222223333333 35799999999999766
Q ss_pred CCCCccceEEEEEec
Q 000177 1797 DQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1797 ds~d~dSsVRLyEVG 1811 (1922)
++..|+.||++-..
T Consensus 304 -SGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 304 -SGGEDGYVRLHHFD 317 (327)
T ss_pred -cCCCCceEEEEEec
Confidence 56677899998653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=224.59 Aligned_cols=228 Identities=17% Similarity=0.320 Sum_probs=198.6
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
|.|.+...++.|.-.. -+|.+++|-+.-+++++|+.|..|+||+.++++.+.+|.+|...|.+| +.+|.-.+++|+
T Consensus 40 WnyetqtmVksfeV~~-~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~i--avHPt~P~vLtsS 116 (794)
T KOG0276|consen 40 WNYETQTMVKSFEVSE-VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSI--AVHPTLPYVLTSS 116 (794)
T ss_pred Eecccceeeeeeeecc-cchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeee--eecCCCCeEEecC
Confidence 3455666666666555 789999999999999999999999999999999999999999999999 889999999995
Q ss_pred cCCcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+|-+|++||++. ...+.++|+|| .+++|+| |.+.|+++ +-|++|++|.+.+..+..++. +|...
T Consensus 117 DDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~---sLDrTVKVWslgs~~~nfTl~-------gHekG 185 (794)
T KOG0276|consen 117 DDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDPNTFASA---SLDRTVKVWSLGSPHPNFTLE-------GHEKG 185 (794)
T ss_pred CccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCccceeee---eccccEEEEEcCCCCCceeee-------ccccC
Confidence 588999999986 46788999997 5789999 67899999 899999999999988888886 33445
Q ss_pred ceEEEEcCCC--CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1647 YSQIHFSPSD--TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1647 ~~vVaFSPdG--~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
++++.|-+-| .++++++ ++||.++..|+.++.||.+.+ .++|||.=..|++|| +||+-.|.++..++
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 6668888766 6899988 999999999999999999999 899999999999999 59999999988887
Q ss_pred c-CCCc-eeEEEccCCCEEEEEE
Q 000177 1714 P-SLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1714 ~-gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
. +... |+++-.+.+..|+.|+
T Consensus 266 n~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 266 NYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred hcCCceEEEEeecCCCCeEEEec
Confidence 6 3333 9999999988888884
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=206.85 Aligned_cols=272 Identities=15% Similarity=0.203 Sum_probs=203.8
Q ss_pred eeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC---Cceeee-ccCCCCeeEEEeeecCCCcEEEEec-
Q 000177 1499 RPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSS---SPLESC-TSHQAPVTLVQSHLSGETQLLLSSS- 1572 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tg---k~l~tL-~gHss~VtsLq~afSpDG~lLaSSs- 1572 (1922)
-.++++.+|. +.|+.++|+|- |..|||||.|+.|+||+...+ .+...+ .+|+..|.++ +|+|.|++|++++
T Consensus 5 ~~~~~~~gh~-~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsv--Awsp~g~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHK-DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSV--AWSPHGRYLASASF 81 (312)
T ss_pred eeEEeecCCC-CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeee--eecCCCcEEEEeec
Confidence 4567889999 89999999997 899999999999999998743 344444 6899999999 8999999999965
Q ss_pred CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc---eeeeeccccccccCCCC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQ---LEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk---~i~tL~d~s~~~~~~gh 1645 (1922)
|.++.||.-.....+++.+++|| .+++|+++|++|+++ +.|+.|.||.+..+. ++..++ +|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC---SRDKSVWiWe~deddEfec~aVL~---------~H 149 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC---SRDKSVWIWEIDEDDEFECIAVLQ---------EH 149 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe---eCCCeEEEEEecCCCcEEEEeeec---------cc
Confidence 99999998876567788999987 899999999999999 999999999998544 334443 45
Q ss_pred cce--EEEEcCCCCeEeecc-----EEEEcC---CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeE
Q 000177 1646 AYS--QIHFSPSDTMLLWNG-----ILWDRR---NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1646 ~~~--vVaFSPdG~lLaSgg-----rLWDlr---tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgkl 1709 (1922)
... .+.|+|...+|++++ ++|+-. ...++.++.+|++.+ +++|+|+|..|++++ +||-+.+.
T Consensus 150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-- 227 (312)
T KOG0645|consen 150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-- 227 (312)
T ss_pred cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--
Confidence 544 499999999999999 788766 235899999999988 999999999999999 58886522
Q ss_pred EEEEcC-C--CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc--CCceEEEEEc
Q 000177 1710 LRSVPS-L--DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDFATE 1784 (1922)
Q Consensus 1710 L~tl~g-H--~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dLa~S 1784 (1922)
+++ | ....+.|. ...|+++..++...++. ...+| +...|..+...+. .-.|+.+.|+
T Consensus 228 ---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~-----~s~~~--------d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 228 ---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK-----ESDSP--------DEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred ---cchhcccceEeeeec--ccceEeccCCCEEEEEE-----ecCCC--------CCchHHHHHhhhcccccccceEEEc
Confidence 221 2 12678888 45777775443222211 00111 1123333333322 2359999999
Q ss_pred CC-CceEEEEecCCCCCccceEEEEEec
Q 000177 1785 RT-DSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1785 Pd-ds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
|. ...|+. ...|+.|++|++.
T Consensus 290 p~~~~~L~s------~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLAS------GGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceee------cCCCceEEEEEec
Confidence 95 444442 3334889999863
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=225.26 Aligned_cols=259 Identities=14% Similarity=0.247 Sum_probs=225.7
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
.++|..|+ ..|.|+.|+|...+++++-..|.|.|||.++...+++|.-..-||... .|-...+++++| +|..|+||
T Consensus 6 krk~~~rS-dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~--kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 6 KRKFQSRS-DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAA--KFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhHhhccC-CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhh--eeeeccceEEEecCCceEEEE
Confidence 34556688 899999999999999999999999999999999999998888999998 777788888886 59999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
+.++ +..+++|..| ++++.||...+++++ ++|-+|++||.+. ..+.++|. +|.|-+..++|+|
T Consensus 83 nynt--~ekV~~FeAH~DyIR~iavHPt~P~vLts---SDDm~iKlW~we~~wa~~qtfe-------GH~HyVMqv~fnP 150 (794)
T KOG0276|consen 83 NYNT--GEKVKTFEAHSDYIRSIAVHPTLPYVLTS---SDDMTIKLWDWENEWACEQTFE-------GHEHYVMQVAFNP 150 (794)
T ss_pred eccc--ceeeEEeeccccceeeeeecCCCCeEEec---CCccEEEEeeccCceeeeeEEc-------CcceEEEEEEecC
Confidence 9999 8889999987 899999999999998 9999999999985 46677775 4555666699999
Q ss_pred CC-CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCC--CEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1655 SD-TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG--NEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1655 dG-~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG--~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
.+ +.+++++ ++|.+.+..+..++++|...| ++.|-+-| .+|++|+ +|||.+|..+++++.||.+
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 66 6788888 999999999999999999999 99998765 6999999 6999999999999999988
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEE
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVV 1793 (1922)
+.+.|+|.=..|++++. +.+.++|++.+|+...+... -.++++++..+.+..+++-
T Consensus 231 s~v~fhp~lpiiisgsE-------------------DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG 287 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSE-------------------DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVG 287 (794)
T ss_pred eEEEecCCCcEEEEecC-------------------CccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEe
Confidence 69999999999999952 34678899999988887766 4569999998888877654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-21 Score=235.83 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=125.6
Q ss_pred CceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCC
Q 000177 1542 SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSD 1616 (1922)
Q Consensus 1542 k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~D 1616 (1922)
+..++|..|+..-+|+ +|+.+.++|+.|. .|.|++|++.+ |.......+| +.+.-+.+|..+++.+. ...
T Consensus 1092 r~w~~frd~~~~fTc~--afs~~~~hL~vG~~~Geik~~nv~s--G~~e~s~ncH~SavT~vePs~dgs~~Ltsss-~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCI--AFSGGTNHLAVGSHAGEIKIFNVSS--GSMEESVNCHQSAVTLVEPSVDGSTQLTSSS-SSS 1166 (1516)
T ss_pred ccchhhhccccceeeE--EeecCCceEEeeeccceEEEEEccC--ccccccccccccccccccccCCcceeeeecc-ccC
Confidence 4456788889999999 8999988888865 99999999998 7766677666 44666778888877632 222
Q ss_pred CeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCeEe--ecc---EEEEcCCCcceeeeccCCC-----ceE
Q 000177 1617 RGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL--WNG---ILWDRRNSVPVHRFDQFTD-----HGG 1685 (1922)
Q Consensus 1617 gtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa--Sgg---rLWDlrtgk~I~kf~gh~~-----~Vs 1685 (1922)
--..+|++.. +...++|. ....+.|+..-+.-+ +.+ .+||+.++.++.+|-.... ..+
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~-----------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFD-----------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred chHHHhccccccCcccccc-----------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence 3467899864 44444443 122377776543333 333 8999999988777432211 127
Q ss_pred EEEecCCCEEEEEeEEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEE
Q 000177 1686 GGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1686 VaFSPdG~~LASGSeIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSg 1733 (1922)
+.|+|+...|.-.+-+||++..+.++.|..... -.-.|+|+|.-++.-
T Consensus 1236 a~FsP~D~LIlndGvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1236 AHFSPCDTLILNDGVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN 1284 (1516)
T ss_pred cccCCCcceEeeCceeeeeccHHHHhhhhhheecccccccCCCceEEee
Confidence 899999999998889999998877777764444 366799999888764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=227.58 Aligned_cols=207 Identities=15% Similarity=0.250 Sum_probs=166.6
Q ss_pred EecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCCC-cEEEE-ec
Q 000177 1503 TCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGET-QLLLS-SS 1572 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpDG-~lLaS-Ss 1572 (1922)
.|.+|. +.|++++|+| ++++|++|+.|++|+|||+.++ .++.++.+|...|.+| .|+|++ .+|++ +.
T Consensus 70 ~l~GH~-~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l--~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 70 ILLGQE-GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV--SFHPSAMNVLASAGA 146 (493)
T ss_pred eEeCCC-CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEE--EeCcCCCCEEEEEeC
Confidence 478999 9999999999 8899999999999999999765 3567889999999999 889875 57777 56
Q ss_pred CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc-
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY- 1647 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~- 1647 (1922)
|++|+|||+.+ ++.+..+.+| .+++|+|+|++|+++ +.|++|+|||+++++.+.++. +|..
T Consensus 147 DgtVrIWDl~t--g~~~~~l~~h~~~V~sla~spdG~lLatg---s~Dg~IrIwD~rsg~~v~tl~---------~H~~~ 212 (493)
T PTZ00421 147 DMVVNVWDVER--GKAVEVIKCHSDQITSLEWNLDGSLLCTT---SKDKKLNIIDPRDGTIVSSVE---------AHASA 212 (493)
T ss_pred CCEEEEEECCC--CeEEEEEcCCCCceEEEEEECCCCEEEEe---cCCCEEEEEECCCCcEEEEEe---------cCCCC
Confidence 99999999998 7777777764 789999999999999 899999999999999887775 3432
Q ss_pred --eEEEEcCCCCeEeecc---------EEEEcCCCc-ceeeeccCCC-ce-EEEEecCCCEEEEEe------EEEecCCC
Q 000177 1648 --SQIHFSPSDTMLLWNG---------ILWDRRNSV-PVHRFDQFTD-HG-GGGFHPAGNEVIINS------EVWDLRKF 1707 (1922)
Q Consensus 1648 --~vVaFSPdG~lLaSgg---------rLWDlrtgk-~I~kf~gh~~-~V-sVaFSPdG~~LASGS------eIWDLrTg 1707 (1922)
..+.|.+++.++++.+ ++||+++.. ++..+..+.. .+ ...|++++++|++++ ++||+.++
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 3478999988887543 899999754 5554443332 33 668999999998876 49999999
Q ss_pred eEEEEEcCCC---ceeEEEccC
Q 000177 1708 RLLRSVPSLD---QTTITFNAR 1726 (1922)
Q Consensus 1708 klL~tl~gH~---~~sVaFSPd 1726 (1922)
+++....... ...++|.|.
T Consensus 293 ~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 293 RLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ceEEEeeccCCCCCcceEeccc
Confidence 8877654322 257777774
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=212.56 Aligned_cols=303 Identities=19% Similarity=0.231 Sum_probs=232.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCCcCCCCCCCCCCccc---------CCCC----CCCCCCCCcceeecccccceecc
Q 000177 1416 NSERITLDSLVVQYLKHQHRQC-PAPITTLPPLSLLHPHV---------CPEP----KRSLDAPSNVTARLGTREFKSTY 1481 (1922)
Q Consensus 1416 ~~p~~~LdsIVtqyLr~QH~qC-~~PVtt~PpfSLl~pH~---------CPeP----k~~lsAP~N~aaRl~sr~l~~~~ 1481 (1922)
..||.||-.++-|.|+-|+.|- ..|-++ +.||.... .|.- ...-..++--++++.....+...
T Consensus 154 VVppSRLlaLlGQaLKWQqHQGLLPPGt~---iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvs 230 (508)
T KOG0275|consen 154 VVPPSRLLALLGQALKWQQHQGLLPPGTT---IDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVS 230 (508)
T ss_pred EcChHHHHHHHHHHhhhHhhcCCCCCCce---eeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEee
Confidence 3578999999999999886664 333333 45554221 1110 00112234446788888888888
Q ss_pred cCCccccccceeeecCceeeE------EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCe
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWR------TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPV 1554 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpir------tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~V 1554 (1922)
|..+|-..+|+|.....+.-- .|.-|. +.|.|+.||.|...|++|+.||.|+||.+.+|.|++.| .+|+..|
T Consensus 231 gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd-~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGv 309 (508)
T KOG0275|consen 231 GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD-DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGV 309 (508)
T ss_pred ccccceeeeehhccchhhhhhhhhhhcceeecc-cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCe
Confidence 888888888888665544322 233466 89999999999999999999999999999999999999 5999999
Q ss_pred eEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1555 TLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
+++ .||.|+..+++ |-|.+++|.-+.+ ++++..|.|| +.+.|.++|.+++++ +.||+|++|+..+..|
T Consensus 310 t~l--~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKEfrGHsSyvn~a~ft~dG~~iisa---SsDgtvkvW~~KtteC 382 (508)
T KOG0275|consen 310 TCL--SFSRDNSQILSASFDQTVRIHGLKS--GKCLKEFRGHSSYVNEATFTDDGHHIISA---SSDGTVKVWHGKTTEC 382 (508)
T ss_pred eEE--EEccCcchhhcccccceEEEecccc--chhHHHhcCccccccceEEcCCCCeEEEe---cCCccEEEecCcchhh
Confidence 999 89999988888 5599999999998 9999999998 568999999999999 8999999999999999
Q ss_pred eeeeccccccccCCCCcceEEEEcCCC-CeEeecc-----EEEEcCCCcceeeeccCC----CceEEEEecCCCEEEEEe
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG-----ILWDRRNSVPVHRFDQFT----DHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg-----rLWDlrtgk~I~kf~gh~----~~VsVaFSPdG~~LASGS 1699 (1922)
+.+|.+. +..+.++.+-.-|.+ ..++.+. ++.++ .|+.+++|.... ..++++.+|.|.++.+.+
T Consensus 383 ~~Tfk~~-----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 383 LSTFKPL-----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred hhhccCC-----CCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 9999732 134556666555544 4444443 44444 478888886432 344899999999999888
Q ss_pred E-----EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1700 E-----VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1700 e-----IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+ .|.+.+|++-++++-|.. -.++-+|..+.|++.+.
T Consensus 457 ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 457 EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc
Confidence 4 577888999999998876 68888998888887643
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=232.60 Aligned_cols=234 Identities=15% Similarity=0.208 Sum_probs=185.1
Q ss_pred ecCceeeEEec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------C
Q 000177 1495 YSRFRPWRTCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--------------------------------S 1541 (1922)
Q Consensus 1495 ~srfrpirtLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--------------------------------g 1541 (1922)
++.....+.+. .|. +.||++.||+||+|||+|+.||.|+||.+.. .
T Consensus 253 lsal~~~Qe~~~ah~-gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 253 LSALTVVQEISNAHK-GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred ceeeEEeeccccccC-CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 34445566677 799 9999999999999999999999999998744 0
Q ss_pred ----------------------------CceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec
Q 000177 1542 ----------------------------SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE 1593 (1922)
Q Consensus 1542 ----------------------------k~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~ 1593 (1922)
+++..|.||...|..| +||.++-+|.+|-|.||+||++.. ..|+..|.
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDl--SWSKn~fLLSSSMDKTVRLWh~~~--~~CL~~F~ 407 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDL--SWSKNNFLLSSSMDKTVRLWHPGR--KECLKVFS 407 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheec--ccccCCeeEeccccccEEeecCCC--cceeeEEe
Confidence 1234578999999999 889887666667799999999998 88999986
Q ss_pred c---ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----E
Q 000177 1594 G---CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----I 1664 (1922)
Q Consensus 1594 g---h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----r 1664 (1922)
- ++||+|+| |.++|++| +-|+.|+||++...+.+.-.. ....+..++|.|+|++.+.|+ +
T Consensus 408 HndfVTcVaFnPvDDryFiSG---SLD~KvRiWsI~d~~Vv~W~D--------l~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISG---SLDGKVRLWSISDKKVVDWND--------LRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred cCCeeEEEEecccCCCcEeec---ccccceEEeecCcCeeEeehh--------hhhhheeEEeccCCceEEEEEeccEEE
Confidence 5 59999999 78999999 899999999999877665443 124455699999999999887 8
Q ss_pred EEEcCCCcceeeeccC--------CCce-EEEEecCCC--EEEEEe----EEEecCCCeEEEEEcCCCc----eeEEEcc
Q 000177 1665 LWDRRNSVPVHRFDQF--------TDHG-GGGFHPAGN--EVIINS----EVWDLRKFRLLRSVPSLDQ----TTITFNA 1725 (1922)
Q Consensus 1665 LWDlrtgk~I~kf~gh--------~~~V-sVaFSPdG~--~LASGS----eIWDLrTgklL~tl~gH~~----~sVaFSP 1725 (1922)
+|+....+.+..++-+ ...| ++.|.|... .|++.. +|+|+++..++..++|+.+ ....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 9998877765554321 1235 888987654 455544 6999999999999997765 6889999
Q ss_pred CCCEEEEEEccCchhhhhhh
Q 000177 1726 RGDVIYAILRRNLEDVMSAV 1745 (1922)
Q Consensus 1726 dG~~LaSgs~~d~~dv~s~l 1745 (1922)
+|++|++++ ++.+.+.|..
T Consensus 557 Dgk~IVs~s-eDs~VYiW~~ 575 (712)
T KOG0283|consen 557 DGKHIVSAS-EDSWVYIWKN 575 (712)
T ss_pred CCCEEEEee-cCceEEEEeC
Confidence 999999996 5556665543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=199.82 Aligned_cols=250 Identities=14% Similarity=0.197 Sum_probs=204.3
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEe
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLW 1579 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLW 1579 (1922)
.+++..|. ++|..+.|+-||+|.++++.|.+|++||...|.+++++.+|...|..+ +.+.|+..+++ |.|..|.+|
T Consensus 10 ~~~l~~~q-gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~--~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQ-GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDA--ALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccc-cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeec--cccccccccccCCCCceEEEE
Confidence 45677899 999999999999999999999999999999999999999999999999 67778888877 569999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC--ceeeeeccccccccCCCCcceEEEEc
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTY--QLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg--k~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
|+.+ ++.++.|.+| +.+.|+.+...+++| +-|.++++||.++. ++++.+. .....+..+.
T Consensus 87 DV~T--Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sg---sfD~s~r~wDCRS~s~ePiQild---------ea~D~V~Si~ 152 (307)
T KOG0316|consen 87 DVNT--GKVDRRFRGHLAQVNTVRFNEESSVVASG---SFDSSVRLWDCRSRSFEPIQILD---------EAKDGVSSID 152 (307)
T ss_pred Eccc--CeeeeecccccceeeEEEecCcceEEEec---cccceeEEEEcccCCCCccchhh---------hhcCceeEEE
Confidence 9999 9999999987 889999999999999 88999999999864 3455443 3344445555
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc----
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---- 1718 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---- 1718 (1922)
-.+..|++++ +.||+|.|+...-+-+ .+| ++.|+++|+.++.++ ++.|-.||++++.++||.+
T Consensus 153 v~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 153 VAEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred ecccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 6677788776 9999999987655544 456 999999999999888 6999999999999999988
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC--ceEEEEEcCCCc
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR--CVLDFATERTDS 1788 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr--~I~dLa~SPdds 1788 (1922)
...+++.....+++++.+. ...+||-.+-..+..+.+.. .|.++.++|.-.
T Consensus 231 ldc~l~qsdthV~sgSEDG-------------------~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDG-------------------KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred eeeeecccceeEEeccCCc-------------------eEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence 4677888888888885322 23455555555555555533 378999999544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=215.26 Aligned_cols=222 Identities=15% Similarity=0.252 Sum_probs=190.5
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEec-CC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSSS-SQ 1574 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSSs-Dg 1574 (1922)
+++..+++.+|. .+|..+.||||.++|++++.|..+++||+.+|.+...+ .+|...+.++ +|.|||.-+++|+ |+
T Consensus 258 ~~kl~~tlvgh~-~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc--~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 258 HFKLKKTLVGHS-QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSC--AWCPDGFRFVTGSPDR 334 (519)
T ss_pred ceeeeeeeeccc-CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCccee--EEccCCceeEecCCCC
Confidence 478889999999 99999999999999999999999999999999998888 5677888999 8899999999965 99
Q ss_pred cEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1575 DVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
++..||+. +..+..+++ +++++..+||+++++. +.|..|++|+..+......+. ..+....
T Consensus 335 ~i~~wdlD---gn~~~~W~gvr~~~v~dlait~Dgk~vl~v---~~d~~i~l~~~e~~~dr~lis--------e~~~its 400 (519)
T KOG0293|consen 335 TIIMWDLD---GNILGNWEGVRDPKVHDLAITYDGKYVLLV---TVDKKIRLYNREARVDRGLIS--------EEQPITS 400 (519)
T ss_pred cEEEecCC---cchhhcccccccceeEEEEEcCCCcEEEEE---ecccceeeechhhhhhhcccc--------ccCceeE
Confidence 99999997 556666666 3789999999999998 789999999998866654443 3567777
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce---EEEEe-cCCCEEEEEeE-----EEecCCCeEEEEEcC
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG---GGGFH-PAGNEVIINSE-----VWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V---sVaFS-PdG~~LASGSe-----IWDLrTgklL~tl~g 1715 (1922)
++.|.+++++++.- ++||+...+.+.+|.||.... .-||. .+..+|++||+ ||+..+++++.++.|
T Consensus 401 ~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 401 FSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 99999999988654 999999999999999998754 44554 45689999994 999999999999999
Q ss_pred CCc--eeEEEccCCCEEEEEEc
Q 000177 1716 LDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
|.. ++|+|||....++++..
T Consensus 481 Hs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred CcceeeEEecCCCCHHHhhccC
Confidence 988 79999998877766533
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=203.09 Aligned_cols=268 Identities=18% Similarity=0.253 Sum_probs=205.7
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEE
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHL 1578 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkL 1578 (1922)
.+.+|..|+ +.|.+|+.+|+.++++||+.|-...||++.++.....+.+|...|+++ .||.+|.||+||+ +|.|+|
T Consensus 56 S~~tF~~H~-~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~--~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHT-DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCC--SFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcC-CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEE--EEccCceEEEecCCCccEEE
Confidence 356789999 999999999999999999999999999999999999999999999999 8899999999987 999999
Q ss_pred eccCCCCCCcceEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEE
Q 000177 1579 WNASSIAGGPMHSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHF 1652 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaF 1652 (1922)
|...+ +.....+. ...-+.|||-+..|++| +.||.+.+|.+.++...+.+. ||..++ -.|
T Consensus 133 ~~~st--g~~~~~~~~e~~dieWl~WHp~a~illAG---~~DGsvWmw~ip~~~~~kv~~---------Gh~~~ct~G~f 198 (399)
T KOG0296|consen 133 FKVST--GGEQWKLDQEVEDIEWLKWHPRAHILLAG---STDGSVWMWQIPSQALCKVMS---------GHNSPCTCGEF 198 (399)
T ss_pred EEccc--CceEEEeecccCceEEEEecccccEEEee---cCCCcEEEEECCCcceeeEec---------CCCCCcccccc
Confidence 99998 55555553 34678999999999998 999999999999987777775 565554 789
Q ss_pred cCCCCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEeE-------------------------
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINSE------------------------- 1700 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGSe------------------------- 1700 (1922)
.|+|+.++++. ++||..++++++++.+..+.- ++.++.++..++.|++
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 99999999765 999999999999886433221 4444444444444441
Q ss_pred ---------------------------------EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhh
Q 000177 1701 ---------------------------------VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAV 1745 (1922)
Q Consensus 1701 ---------------------------------IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~l 1745 (1922)
|||+.+.++-+.+. |.. ..+.|-+ -.+|+++.
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c----------- 345 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTAC----------- 345 (399)
T ss_pred cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeec-----------
Confidence 44444333322222 222 3444444 33344332
Q ss_pred cccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1746 HTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1746 h~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+..++.||+.+.....+.... ..|++++++|+.+++..+. .++..++|++.
T Consensus 346 --------~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s------~D~~a~VF~v~ 398 (399)
T KOG0296|consen 346 --------ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS------DDNTALVFEVP 398 (399)
T ss_pred --------cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec------CCCeEEEEecC
Confidence 3456889999999988888764 4699999999999887663 34778898874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=221.72 Aligned_cols=239 Identities=15% Similarity=0.262 Sum_probs=197.3
Q ss_pred ecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEE
Q 000177 1479 STYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1479 ~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq 1558 (1922)
...+++++..+.|.+ |...+.+++|.+|. .+|..++|+++|..++|+|.|+.|++||+++|+++..|.- ...++|+
T Consensus 230 lLS~gmD~~vklW~v-y~~~~~lrtf~gH~-k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cv- 305 (503)
T KOG0282|consen 230 LLSGGMDGLVKLWNV-YDDRRCLRTFKGHR-KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCV- 305 (503)
T ss_pred EEecCCCceEEEEEE-ecCcceehhhhcch-hhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceee-
Confidence 456788888888887 77899999999999 9999999999999999999999999999999999988852 3567888
Q ss_pred eeecCCC-cEEEE-ecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1559 SHLSGET-QLLLS-SSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1559 ~afSpDG-~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
.|+||+ +++++ ++|+.|+.||+++ ++.++.+.. +..+.|-++|++|++. +.|++++||+.+....++.
T Consensus 306 -kf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~~~g~rFiss---SDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 306 -KFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFVDEGRRFISS---SDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred -ecCCCCCcEEEEecCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEccCCceEeee---ccCccEEEEEcCCCccchh
Confidence 788888 55555 5799999999998 777766654 4889999999999998 8999999999998877665
Q ss_pred eccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC---cceeeeccCCCc---eEEEEecCCCEEEEEe--
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS---VPVHRFDQFTDH---GGGGFHPAGNEVIINS-- 1699 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg---k~I~kf~gh~~~---VsVaFSPdG~~LASGS-- 1699 (1922)
+.+ ...|..+++..+|++++++.-+ .+|.+... ..-++|.+|.-. +.+.|||||.+|++|.
T Consensus 380 i~~------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 380 IAD------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred hcc------hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 541 2358888899999999999776 45554422 234567777643 3799999999999998
Q ss_pred ---EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1700 ---EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 ---eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
-+||.+|-+++..+++|+. ..+.|+|...-.+++
T Consensus 454 G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 454 GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred ccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe
Confidence 3999999999999999977 689999976544443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=207.12 Aligned_cols=279 Identities=14% Similarity=0.202 Sum_probs=193.4
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec---cCCCCeeEEEeeecCCCcEEEE-
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT---SHQAPVTLVQSHLSGETQLLLS- 1570 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~---gHss~VtsLq~afSpDG~lLaS- 1570 (1922)
-..|+...+++.|. .-|+|+.|+|||++++|.+.||+|.|||-.+|+.+..+. +|.+.|+.| +|+||++.++|
T Consensus 177 GPPFKFk~s~r~Hs-kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal--sWsPDs~~~~T~ 253 (603)
T KOG0318|consen 177 GPPFKFKSSFREHS-KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL--SWSPDSTQFLTV 253 (603)
T ss_pred CCCeeeeecccccc-cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE--EECCCCceEEEe
Confidence 34566677889999 899999999999999999999999999999999999986 999999999 89999999988
Q ss_pred ecCCcEEEeccCCCCCCcceEec-------------------------------------------cc----eeEEEcCC
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSFE-------------------------------------------GC----KAARFSNS 1603 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf~-------------------------------------------gh----~sVaFSPD 1603 (1922)
|.|.+++|||+.+ .+++.+|. || +++..+|+
T Consensus 254 SaDkt~KIWdVs~--~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 254 SADKTIKIWDVST--NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred cCCceEEEEEeec--cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 5699999999987 44433321 22 67899999
Q ss_pred CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE----------------------------------
Q 000177 1604 GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ---------------------------------- 1649 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v---------------------------------- 1649 (1922)
+++|++| +.||.|.-||+.+|..-.... .+|...+
T Consensus 332 ~~~i~Sg---syDG~I~~W~~~~g~~~~~~g--------~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 332 GKTIYSG---SYDGHINSWDSGSGTSDRLAG--------KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred CCEEEee---ccCceEEEEecCCcccccccc--------ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 9999999 999999999998876543221 1222222
Q ss_pred ----------EEEcCCCCeEeecc--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEE
Q 000177 1650 ----------IHFSPSDTMLLWNG--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1650 ----------VaFSPdG~lLaSgg--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~t 1712 (1922)
++..+++.+++... .|-=++..+.+.+..-.-..-+++++|++.++++|+ .||.+....+...
T Consensus 401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce
Confidence 33333332222111 111111111111121111122789999999999999 3888876543322
Q ss_pred --EcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee-eeec-cCCceEEEEEcCC
Q 000177 1713 --VPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI-ATIP-VDRCVLDFATERT 1786 (1922)
Q Consensus 1713 --l~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I-aTid-vkr~I~dLa~SPd 1786 (1922)
...|.. ++|+|||+|.||+++- .... .-.++..++... .... ...+|..++|+|+
T Consensus 481 ~~~~~h~a~iT~vaySpd~~yla~~D-a~rk------------------vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 481 AKLLEHRAAITDVAYSPDGAYLAAGD-ASRK------------------VVLYDVASREVKTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred eeeecccCCceEEEECCCCcEEEEec-cCCc------------------EEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence 234544 8999999999999982 1111 222333332221 1111 2456999999999
Q ss_pred CceEEEEecCCCCCccceEEEEEecCCC
Q 000177 1787 DSFVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1787 ds~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
...+| ++..|+.|-||+|.+..
T Consensus 542 n~~vA------TGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 542 NKLVA------TGSLDTNVIIYSVKKPA 563 (603)
T ss_pred ceEEE------eccccceEEEEEccChh
Confidence 99988 45678999999996643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-20 Score=207.93 Aligned_cols=258 Identities=14% Similarity=0.283 Sum_probs=202.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--------eccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--------CTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--------L~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
+-+-|..|||||++|++||.||.|.+||..+|+..+. |--|..+|.|+ .||.|..+|++|+ ||.|++|.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci--~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCI--SFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEE--eecccHHHhhccCcCCcEEEEE
Confidence 5678999999999999999999999999999976543 34478899999 8999999999976 99999999
Q ss_pred cCCCCCCcceEec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEc
Q 000177 1581 ASSIAGGPMHSFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFS 1653 (1922)
Q Consensus 1581 l~t~~gk~l~tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFS 1653 (1922)
+.+ +.|++.|. |++|+.|+.|+..++++ +.|.+++|.-+.+|++++.|. ||...+ +.|+
T Consensus 292 i~t--G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvRiHGlKSGK~LKEfr---------GHsSyvn~a~ft 357 (508)
T KOG0275|consen 292 IET--GQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVRIHGLKSGKCLKEFR---------GHSSYVNEATFT 357 (508)
T ss_pred Eec--chHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEEEeccccchhHHHhc---------CccccccceEEc
Confidence 999 99999886 46899999999999998 889999999999999999885 777666 9999
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccCCC--ce-EEEEecCC-CEEEEEeE-----EEecCCCeEEEEEcCCCc-
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD--HG-GGGFHPAG-NEVIINSE-----VWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~V-sVaFSPdG-~~LASGSe-----IWDLrTgklL~tl~gH~~- 1718 (1922)
++|..+++++ ++|+.++..|+.+|+.... .+ ++..-|.. ..++.+.+ |-++. |+.++++.....
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkRE 436 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKRE 436 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCcc
Confidence 9999999877 9999999999999976543 33 66666643 45666653 55664 889998874433
Q ss_pred ----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEE
Q 000177 1719 ----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1719 ----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVV 1793 (1922)
-+...||.|.++|+...+. .+..|.......-.+..+ ++.+..++-+|..+.+|..
T Consensus 437 gGdFi~~~lSpkGewiYcigED~-------------------vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGEDG-------------------VLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred CCceEEEEecCCCcEEEEEccCc-------------------EEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence 5788999999999884222 122233333333344444 4457788889998888854
Q ss_pred ecCCCCCccceEEEEE
Q 000177 1794 TMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1794 e~dds~d~dSsVRLyE 1809 (1922)
. .|+..++|.
T Consensus 498 s------EDgllKLWk 507 (508)
T KOG0275|consen 498 S------EDGLLKLWK 507 (508)
T ss_pred c------ccchhhhcC
Confidence 2 345666763
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=216.66 Aligned_cols=271 Identities=12% Similarity=0.159 Sum_probs=220.5
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEecc
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNA 1581 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl 1581 (1922)
++.||. ..|.+++||.+...+++|+ .+.|+||+..+.++++++.+- .+.+. .|-|.+++++.|. .|.+.|||+
T Consensus 368 ~~~GHR-~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~--~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 368 EIGGHR-SDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILAS--KFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeccch-hheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEE--EecCCCceEEEeccCCceEEEEe
Confidence 456899 9999999998887777765 468999999999999999754 66676 8899999999975 899999999
Q ss_pred CCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC-----Cc--eeeeec-cccccccCCCCcceE
Q 000177 1582 SSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQT-----YQ--LEAKLS-DTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1582 ~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-----gk--~i~tL~-d~s~~~~~~gh~~~v 1649 (1922)
.+ ...+-+...| ++++.+||++.+++| +.|++|++||..- |. .+..+. ...+. ....+-+
T Consensus 442 aS--~~l~Eti~AHdgaIWsi~~~pD~~g~vT~---saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe---l~ddvL~ 513 (888)
T KOG0306|consen 442 AS--ASLVETIRAHDGAIWSISLSPDNKGFVTG---SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE---LEDDVLC 513 (888)
T ss_pred eh--hhhhhhhhccccceeeeeecCCCCceEEe---cCCcEEEEEeEEEEeccCcccceeeeeccceEEe---ccccEEE
Confidence 87 5666666654 889999999999999 9999999999752 11 111111 00000 1344556
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+.+||||++|+.+= ++|-+.+-+..-++.||.-+| |+..+||++.+++|| +||-+.-|.+-+++-+|+.
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 99999999998665 899999988888899999998 999999999999999 6999999999999999987
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ceEEEEEcCCCceEEEEec
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I~dLa~SPdds~LAVVe~ 1795 (1922)
.+|.|-|....++++++ +..++-||+..+..|.+.+... .|+.+++.|+|.++.
T Consensus 594 Svm~V~F~P~~~~FFt~gK-------------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv---- 650 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGK-------------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV---- 650 (888)
T ss_pred ceeEEEEcccceeEEEecC-------------------cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEE----
Confidence 79999998888888742 2357788999999999888754 599999999999976
Q ss_pred CCCCCccceEEEEEecC
Q 000177 1796 DDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1796 dds~d~dSsVRLyEVGr 1812 (1922)
+..+|.++|+|+-++
T Consensus 651 --s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 651 --SSSHDKSIRLWERTD 665 (888)
T ss_pred --eccCCceeEeeeccC
Confidence 345678999998543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=223.26 Aligned_cols=219 Identities=16% Similarity=0.244 Sum_probs=185.8
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecCCC-cEEEE-ecCCc
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSGET-QLLLS-SSSQD 1575 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSpDG-~lLaS-SsDgt 1575 (1922)
+.+.||+ ..|.++....+|-+|+|||+|.+|++|.++.+. ++....||++.|.+| +++..+ .++++ |.|++
T Consensus 359 ~ii~GH~-e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav--a~~~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 359 QIIPGHT-EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV--AGSKLGASFFVSVSQDCT 435 (775)
T ss_pred EEEeCch-hheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee--eecccCccEEEEecCCce
Confidence 3678999 999999966678999999999999999874443 445668999999999 555544 46777 56999
Q ss_pred EEEeccCCCC-CCcceEe----------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1576 VHLWNASSIA-GGPMHSF----------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1576 VkLWDl~t~~-gk~l~tf----------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+++|++.... ......| +.+++++++|+.+.|+|| +.|++.+||++.......++. |
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~---SqDktaKiW~le~~~l~~vLs---------G 503 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG---SQDKTAKIWDLEQLRLLGVLS---------G 503 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec---ccccceeeecccCceEEEEee---------C
Confidence 9999997510 1111122 125999999999999999 999999999999888888886 6
Q ss_pred Ccc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1645 HAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1645 h~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
|.. +++.|+|.+++++|++ +||.+.+..|+++|.||...| .+.|-.+|+.|++++ +||++.+..++.
T Consensus 504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 665 4599999999999888 999999999999999999999 999999999999998 799999999999
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
++..|.. |.++-+|.+.+++++..
T Consensus 584 tlD~H~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 584 TLDAHNDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred hhhhccceeEEEeecCccceeEecCC
Confidence 9999987 89999999998888743
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=210.89 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=198.8
Q ss_pred CCCcccCCCCCCCCCCCCcceeecccccceecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe
Q 000177 1449 LLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS 1528 (1922)
Q Consensus 1449 Ll~pH~CPePk~~lsAP~N~aaRl~sr~l~~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS 1528 (1922)
+.+.++.|. .|++|+.....+-. .|+.. ...+.++|.--. ..|+++.|-.||++|+.|.
T Consensus 29 vssl~fsp~------~P~d~aVt~S~rvq--ly~~~------------~~~~~k~~srFk-~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 29 VSSLCFSPK------HPYDFAVTSSVRVQ--LYSSV------------TRSVRKTFSRFK-DVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred ceeEecCCC------CCCceEEecccEEE--EEecc------------hhhhhhhHHhhc-cceeEEEeecCCeEEEccC
Confidence 334555553 48888887776642 22211 111222222223 6799999999999999999
Q ss_pred CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE-EEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcC
Q 000177 1529 HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL-LSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSN 1602 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL-aSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP 1602 (1922)
..|.|+|||..+...++.+.+|+.+|..+ .|+|++..+ ++|+ |+.+++||+.+ ......+.+| +|.+|+|
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~--~f~~~d~t~l~s~sDd~v~k~~d~s~--a~v~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVT--KFSPQDNTMLVSGSDDKVVKYWDLST--AYVQAELSGHTDYVRCGDISP 163 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEE--EecccCCeEEEecCCCceEEEEEcCC--cEEEEEecCCcceeEeecccc
Confidence 99999999987777889999999999999 788876554 4454 78899999987 4444467776 7899999
Q ss_pred C-CCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCC-ccee
Q 000177 1603 S-GNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNS-VPVH 1675 (1922)
Q Consensus 1603 D-G~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtg-k~I~ 1675 (1922)
- +..+++| +.||+|++||+++. ..+..+. +++++..+.|-|.|.+|+++| ++||+.+| +.+.
T Consensus 164 ~~~hivvtG---sYDg~vrl~DtR~~~~~v~eln--------hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 164 ANDHIVVTG---SYDGKVRLWDTRSLTSRVVELN--------HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred CCCeEEEec---CCCceEEEEEeccCCceeEEec--------CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh
Confidence 5 5577887 99999999999987 6666666 788888899999999999888 99999965 5666
Q ss_pred eeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEcc
Q 000177 1676 RFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1676 kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~ 1736 (1922)
.+..|+..| |+.+..++..|++++ ++||+.+.+.++++.-... -+++.+|+++.++.|..+
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 666688888 999999999999999 7999999999998874443 799999999999998543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=221.76 Aligned_cols=259 Identities=14% Similarity=0.230 Sum_probs=204.5
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCC------------CCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGS--HTKELKIFDSNS------------SSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS--~DGtIkIWDl~t------------gk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
-+|.+..|.++..+|||..++||+ .||.++||+.+. .+.+.+...|.+.|+|+ .|++||++|++
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CV--R~S~dG~~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCV--RFSPDGSYLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEE--EECCCCCeEee
Confidence 457667899999999999999999 999999999742 23455668899999999 89999999999
Q ss_pred ec-CCcEEEeccCC-----CCC-----------CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1571 SS-SQDVHLWNASS-----IAG-----------GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1571 Ss-DgtVkLWDl~t-----~~g-----------k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
|+ |+.|.||.... ..+ +++..+.+| ..++|+|++.+++++ +.|++|.|||.++.++
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~---s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV---SLDNSVIIWNAKTFEL 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe---cccceEEEEcccccee
Confidence 65 88899999872 111 234455555 679999999999999 9999999999999988
Q ss_pred eeeeccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC------ce-EEEEecCCCEE
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD------HG-GGGFHPAGNEV 1695 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~------~V-sVaFSPdG~~L 1695 (1922)
+.++. +|...+ ++|.|-|+|+++-+ ++|++.+....+.+.++.. .+ .+.|||||.+|
T Consensus 164 ~~vl~---------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 164 LKVLR---------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred eeeee---------cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCee
Confidence 88886 777777 99999999999887 9999888777777766543 12 78999999999
Q ss_pred EEEe---------EEEecCCCeEEEEEcCCCc--eeEEEccC--------C-------C--EEEEEEccCchhhhhhhcc
Q 000177 1696 IINS---------EVWDLRKFRLLRSVPSLDQ--TTITFNAR--------G-------D--VIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1696 ASGS---------eIWDLrTgklL~tl~gH~~--~sVaFSPd--------G-------~--~LaSgs~~d~~dv~s~lh~ 1747 (1922)
++.. .|.+-.+++.-..+-||.. .++.|||. | . .+++|+
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS------------- 301 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS------------- 301 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec-------------
Confidence 9987 3888888888888999988 79999982 1 1 222332
Q ss_pred cccccCCcceEEEEecCCCceeeeecc--CCceEEEEEcCCCceEEEEecC
Q 000177 1748 RRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDFATERTDSFVGLITMD 1796 (1922)
Q Consensus 1748 rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dLa~SPdds~LAVVe~d 1796 (1922)
.+.++.+|....-.++..+.. ...|.|++|+|+|..|-++.+|
T Consensus 302 ------qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D 346 (942)
T KOG0973|consen 302 ------QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD 346 (942)
T ss_pred ------CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC
Confidence 234566666655566555532 5679999999999988877533
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=190.63 Aligned_cols=262 Identities=15% Similarity=0.209 Sum_probs=211.1
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--C
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--S 1573 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--D 1573 (1922)
..|++.+.|+.-. +.|+++.|+++|.+|++++.|-+|+|||..+++.++++..+...|..++|. +++...+.++. |
T Consensus 2 ~s~~~ak~f~~~~-~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Ft-h~~~~~i~sStk~d 79 (311)
T KOG1446|consen 2 RSFRPAKVFRETN-GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFT-HHSNTVIHSSTKED 79 (311)
T ss_pred cccccccccccCC-CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEe-cCCceEEEccCCCC
Confidence 4577778888866 889999999999999999999999999999999999999999999999542 23444555554 8
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
.+|+.-++.+ .+.++-|.|| ++++.+|-++.|+++ +.|++|++||++..+|...+. -...++
T Consensus 80 ~tIryLsl~d--NkylRYF~GH~~~V~sL~~sP~~d~FlS~---S~D~tvrLWDlR~~~cqg~l~---------~~~~pi 145 (311)
T KOG1446|consen 80 DTIRYLSLHD--NKYLRYFPGHKKRVNSLSVSPKDDTFLSS---SLDKTVRLWDLRVKKCQGLLN---------LSGRPI 145 (311)
T ss_pred CceEEEEeec--CceEEEcCCCCceEEEEEecCCCCeEEec---ccCCeEEeeEecCCCCceEEe---------cCCCcc
Confidence 9999999998 8999999997 789999988999999 899999999999988877664 344567
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCC--cceeeeccC----CCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNS--VPVHRFDQF----TDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtg--k~I~kf~gh----~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
++|+|+|-+++.+. +|||+|+- .|-.+|.-. ..+..+.|||||++|+.++ .+.|--+|.++.++
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 99999999998665 99999963 466666433 3344899999999998888 37788889999999
Q ss_pred cCCCc-----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--CceEEEEEcCC
Q 000177 1714 PSLDQ-----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--RCVLDFATERT 1786 (1922)
Q Consensus 1714 ~gH~~-----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--r~I~dLa~SPd 1786 (1922)
.++.+ -...|+|+|++|+++.. +..+.+|+..+...+..+... ..+..+.|+|.
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fvl~gs~-------------------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFVLSGSD-------------------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eeccCCCCcceeEEECCCCcEEEEecC-------------------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 88776 38899999999999953 234566666666666666552 34667778887
Q ss_pred CceEEE
Q 000177 1787 DSFVGL 1792 (1922)
Q Consensus 1787 ds~LAV 1792 (1922)
-..++.
T Consensus 287 ~~mf~s 292 (311)
T KOG1446|consen 287 YAMFVS 292 (311)
T ss_pred eeeeee
Confidence 666553
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=198.84 Aligned_cols=265 Identities=16% Similarity=0.186 Sum_probs=192.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcce
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~ 1590 (1922)
-.||.|++.|.+||+|..||.|.|||+.|...-+++.+|..+|+++ +||+||++|+|+ .|+.|++||+.. +.+++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl--~WS~dgr~LltsS~D~si~lwDl~~--gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSL--CWSRDGRKLLTSSRDWSIKLWDLLK--GSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEE--EecCCCCEeeeecCCceeEEEeccC--CCcee
Confidence 6899999999999999999999999999999999999999999999 889999999995 599999999998 77877
Q ss_pred Eec---cceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeec-cccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1591 SFE---GCKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLS-DTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1591 tf~---gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~-d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
.+. .++.+.|+|- .+.++++ -.+..-.+.++..++. ..++ ++.. ..+.......|.+.|+++++|.
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~---~~~~sp~vi~~s~~~h-~~Lp~d~d~---dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVAT---IMEESPVVIDFSDPKH-SVLPKDDDG---DLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred EEEccCccceeeeccccCCeEEEE---EecCCcEEEEecCCce-eeccCCCcc---ccccccccccccCCCCEEEEecCc
Confidence 664 3689999994 3444443 2233344555543221 1111 0000 0111122246999999999887
Q ss_pred ---EEEEcCCCcceeeeccCC-Cce-EEEEecCCCEEEEEe-----EEEecCC-------CeE--EEEEcC---CCc-ee
Q 000177 1664 ---ILWDRRNSVPVHRFDQFT-DHG-GGGFHPAGNEVIINS-----EVWDLRK-------FRL--LRSVPS---LDQ-TT 1720 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh~-~~V-sVaFSPdG~~LASGS-----eIWDLrT-------gkl--L~tl~g---H~~-~s 1720 (1922)
.++|..+-++++.|.--. +.| .+.|+..|.++++++ +.|+++. +++ .+.+.. ..+ ++
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 799999999999887666 566 899999999999998 4565541 111 111111 111 58
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC--ceEEEEEcCCCceEEEEecCCC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR--CVLDFATERTDSFVGLITMDDQ 1798 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr--~I~dLa~SPdds~LAVVe~dds 1798 (1922)
+.||.+|.|+++++. ....+.+|+....+.+.-....+ -..|+.|+|....|+.++
T Consensus 255 ccfs~dgeYv~a~s~------------------~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~---- 312 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSA------------------RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA---- 312 (405)
T ss_pred eeecCCccEEEeccc------------------cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc----
Confidence 999999999999842 23456777777777766666533 488999999999888662
Q ss_pred CCccceEEEEEecC
Q 000177 1799 EDMFSSARIYEIGR 1812 (1922)
Q Consensus 1799 ~d~dSsVRLyEVGr 1812 (1922)
-+++++|.+-.
T Consensus 313 ---sg~v~iw~~~~ 323 (405)
T KOG1273|consen 313 ---SGVVYIWAVVQ 323 (405)
T ss_pred ---CCceEEEEeec
Confidence 25789997644
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=197.68 Aligned_cols=245 Identities=14% Similarity=0.160 Sum_probs=186.5
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe-
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS- 1559 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~- 1559 (1922)
.||-+-..+.|. .+.......+.+|+ +.|+|+.||.||.+||||+-+|.|+||...++.....+. ..+..|.|
T Consensus 81 TGGgDD~AflW~--~~~ge~~~eltgHK-DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl 154 (399)
T KOG0296|consen 81 TGGGDDLAFLWD--ISTGEFAGELTGHK-DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWL 154 (399)
T ss_pred ecCCCceEEEEE--ccCCcceeEecCCC-CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEE
Confidence 344433333333 35556778899999 999999999999999999999999999999999888886 44555555
Q ss_pred eecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1560 HLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1560 afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.|+|.+.+|+.|+ ||.|.+|.+.+ +...+.+.|| ++-.|.|+|++++++ ..|++|++||..+++++.++.
T Consensus 155 ~WHp~a~illAG~~DGsvWmw~ip~--~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg---y~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 155 KWHPRAHILLAGSTDGSVWMWQIPS--QALCKVMSGHNSPCTCGEFIPDGKRILTG---YDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred EecccccEEEeecCCCcEEEEECCC--cceeeEecCCCCCcccccccCCCceEEEE---ecCceEEEEecCCCceeEEec
Confidence 8999999999965 99999999987 5667888886 667899999999999 889999999999999988776
Q ss_pred ------ccccccc--------------------------------------CCCCcceEEEEcC---CCCeEeecc----
Q 000177 1635 ------DTSVNLT--------------------------------------GRGHAYSQIHFSP---SDTMLLWNG---- 1663 (1922)
Q Consensus 1635 ------d~s~~~~--------------------------------------~~gh~~~vVaFSP---dG~lLaSgg---- 1663 (1922)
.+..... .+.+...++.|.| .=.+.++++
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~ 309 (399)
T KOG0296|consen 230 QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT 309 (399)
T ss_pred ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccce
Confidence 1110000 0011111122222 223333333
Q ss_pred -EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1664 -ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1664 -rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.|||+.+.++-+.+......+.+.|-+ ..+|++++ ++||.|+|+++.++.||.. .+++++|+++.+++++.
T Consensus 310 i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 310 IAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred EEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 799999888777775444444999999 67777777 6999999999999999987 79999999999999965
Q ss_pred cC
Q 000177 1736 RN 1737 (1922)
Q Consensus 1736 ~d 1737 (1922)
++
T Consensus 389 D~ 390 (399)
T KOG0296|consen 389 DN 390 (399)
T ss_pred CC
Confidence 54
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=213.42 Aligned_cols=280 Identities=14% Similarity=0.178 Sum_probs=223.7
Q ss_pred cCceeeEEecCCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFL-GDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFS-PDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
...++.+.+-|-. +.|..++|- |+.++|+.+++.+.+|+|++.+..+. .+.||+..|.++ ....+|-+|+|++ |
T Consensus 311 ~~l~i~k~ivG~n-dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL--~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 311 DELTIVKQIVGYN-DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSL--DVWSSGDLLATGSKD 386 (775)
T ss_pred cccEEehhhcCCc-hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeee--eecccCcEEEEecCC
Confidence 5677777788866 789988876 57789999999999999998877775 789999999999 4445677888865 9
Q ss_pred CcEEEeccCCCC--CCcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccc----cccC
Q 000177 1574 QDVHLWNASSIA--GGPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV----NLTG 1642 (1922)
Q Consensus 1574 gtVkLWDl~t~~--gk~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~----~~~~ 1642 (1922)
+++++|.++..- ..++....+| .+++++..+ .+|+++ +.|.++++|++...+.... +... ....
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv---S~D~tlK~W~l~~s~~~~~--~~~~~~~~t~~a 461 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV---SQDCTLKLWDLPKSKETAF--PIVLTCRYTERA 461 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe---cCCceEEEecCCCcccccc--cceehhhHHHHh
Confidence 999999884411 1233444555 568887754 678888 9999999999986322111 0111 1122
Q ss_pred CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
|+..+++++++|++++++|++ +||++...+...++.||...+ +|.|+|+.+.++++| +||.+.++.+++
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence 556677899999999999999 999999999999999999999 999999999999999 799999999999
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCc
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDS 1788 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds 1788 (1922)
++.||.. -.+.|-.+|+.|+++. .+.-+++|+..+...+.++|.. .+|+.++.++.+.
T Consensus 542 T~eGH~~aVlra~F~~~~~qliS~~-------------------adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 542 TFEGHTSAVLRASFIRNGKQLISAG-------------------ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred eecCccceeEeeeeeeCCcEEEecc-------------------CCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 9999998 5888999999999884 2345678888888888888884 4699999999988
Q ss_pred eEEEEecCCCCCccceEEEEE
Q 000177 1789 FVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyE 1809 (1922)
++.. ...|+.+-+|.
T Consensus 603 ~~~t------gg~Dg~i~~wk 617 (775)
T KOG0319|consen 603 MFVT------GGGDGRIIFWK 617 (775)
T ss_pred eeEe------cCCCeEEEEee
Confidence 6553 34557788885
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-19 Score=195.43 Aligned_cols=273 Identities=17% Similarity=0.243 Sum_probs=221.0
Q ss_pred EEecCCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEE
Q 000177 1502 RTCRDDAGALLTCITFLG---DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSP---DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVk 1577 (1922)
.++.||+ .+|-.++||| +|-+|+++++||.-.+-+-++|..+.+|.||.+.|++. ..+.+....++ +.|-+-+
T Consensus 8 l~c~ght-rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~--~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHT-RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSA--TLNKNATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCC-cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeee--ecCchhhhhhhhcccchhh
Confidence 4678999 9999999996 89999999999999999999999999999999999998 67766666666 4599999
Q ss_pred EeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEE
Q 000177 1578 LWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHF 1652 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaF 1652 (1922)
|||.-+ +..+++|.. +..++|+.|.++|++| +.++.++|||++..+.... ...+|+..+ +.|
T Consensus 85 vw~a~t--gdelhsf~hkhivk~~af~~ds~~lltg---g~ekllrvfdln~p~App~--------E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 85 VWDAVT--GDELHSFEHKHIVKAVAFSQDSNYLLTG---GQEKLLRVFDLNRPKAPPK--------EISGHTGGIRTVLW 151 (334)
T ss_pred hhhhhh--hhhhhhhhhhheeeeEEecccchhhhcc---chHHHhhhhhccCCCCCch--------hhcCCCCcceeEEE
Confidence 999988 888888864 3889999999999999 8889999999986442111 123666655 889
Q ss_pred cCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc-eeEE
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ-TTIT 1722 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~-~sVa 1722 (1922)
...++.|++.. ++||.++++.++++.......++-++++|.+|.++- ++||..++.+++.+....+ .+..
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESAS 231 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccccc
Confidence 98888888755 999999999999997665555999999999987765 6999999999999886554 7899
Q ss_pred EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee-c-cCCceEEEEEcCCCceEEEEecCCCCC
Q 000177 1723 FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI-P-VDRCVLDFATERTDSFVGLITMDDQED 1800 (1922)
Q Consensus 1723 FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi-d-vkr~I~dLa~SPdds~LAVVe~dds~d 1800 (1922)
.+|+..+++++. ++++ .+.+|-.+...|..+ . ...+|.++.++|+|...| ++.
T Consensus 232 L~P~k~~fVaGg----ed~~---------------~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA------sGS 286 (334)
T KOG0278|consen 232 LHPKKEFFVAGG----EDFK---------------VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYA------SGS 286 (334)
T ss_pred ccCCCceEEecC----cceE---------------EEEEeccCCceeeecccCCCCceEEEEECCCCceee------ccC
Confidence 999987777772 2221 344565666666664 2 245799999999999877 455
Q ss_pred ccceEEEEEecCCCC
Q 000177 1801 MFSSARIYEIGRRRP 1815 (1922)
Q Consensus 1801 ~dSsVRLyEVGr~r~ 1815 (1922)
.|+++|||.+...+.
T Consensus 287 EDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGKT 301 (334)
T ss_pred CCceEEEEEecCCCc
Confidence 679999999876554
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=192.30 Aligned_cols=227 Identities=19% Similarity=0.251 Sum_probs=196.2
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
.+-|.-.+...++++.+|. ..|..++.+.|...+++|+.|..|.+||+.+|+..+.|.+|...|+.+ .|+.+...++
T Consensus 41 vrLWNp~rg~liktYsghG-~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV--~fNeesSVv~ 117 (307)
T KOG0316|consen 41 VRLWNPLRGALIKTYSGHG-HEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV--RFNEESSVVA 117 (307)
T ss_pred EEeecccccceeeeecCCC-ceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE--EecCcceEEE
Confidence 3334455777899999999 999999999999999999999999999999999999999999999999 8899999999
Q ss_pred Eec-CCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1570 SSS-SQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1570 SSs-DgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+++ |.++++||.++...+|++.+.. +.++..+ +..|++| +.||+++.||++.|+...-. .+
T Consensus 118 SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG---S~DGtvRtydiR~G~l~sDy---------~g 183 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG---SVDGTVRTYDIRKGTLSSDY---------FG 183 (307)
T ss_pred eccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee---ccCCcEEEEEeecceeehhh---------cC
Confidence 966 9999999999866778888764 4555554 5678888 89999999999998875544 48
Q ss_pred CcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce---EEEEecCCCEEEEEeE-----EEecCCCeEEE
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG---GGGFHPAGNEVIINSE-----VWDLRKFRLLR 1711 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V---sVaFSPdG~~LASGSe-----IWDLrTgklL~ 1711 (1922)
|++++++|+++++..+.++ ++.|-.+|+.+..|++|.+.- .++++.....+++||+ +||+-..+.+.
T Consensus 184 ~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 184 HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence 9999999999999998776 999999999999999998744 7889988999999995 99999999998
Q ss_pred EEcCCCc---eeEEEccCCCEEEEE
Q 000177 1712 SVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1712 tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
.++.+.. .++.++|.-..++++
T Consensus 264 k~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 264 KLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred eeccCCceeEEeeecccCccceeEe
Confidence 8886654 799999987666655
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=205.88 Aligned_cols=269 Identities=14% Similarity=0.208 Sum_probs=196.7
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeee-ccCCCCeeEEEeeecCCCcEEEE-ecCCc
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESC-TSHQAPVTLVQSHLSGETQLLLS-SSSQD 1575 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL-~gHss~VtsLq~afSpDG~lLaS-SsDgt 1575 (1922)
-.|++|+ ..|.++++.|.|..|+|||.|-+|++||+..-. ..+.+ .+....|+++ .|++.|..|++ +....
T Consensus 161 i~l~hgt-k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl--~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGT-KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSL--QYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCc-eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccccccee--eecCCCCeEEEEecCcc
Confidence 3477888 999999999999999999999999999996432 22233 4556789999 77888776655 77888
Q ss_pred EEEeccCCCCCCcceEe-------------ccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCc-eeeeeccc
Q 000177 1576 VHLWNASSIAGGPMHSF-------------EGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQ-LEAKLSDT 1636 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf-------------~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~ 1636 (1922)
.+|+|-.- ..+..| +|| +|.+|+|.. ..|+++ +.|++++|||+...+ ..+.|. +
T Consensus 238 akl~DRdG---~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~---s~DgtlRiWdv~~~k~q~qVik-~ 310 (641)
T KOG0772|consen 238 AKLLDRDG---FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC---SYDGTLRIWDVNNTKSQLQVIK-T 310 (641)
T ss_pred eeEEccCC---ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe---cCCCcEEEEecCCchhheeEEe-e
Confidence 99998763 222221 234 789999964 578888 899999999998654 333343 1
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC--cceeee-ccCCC--ce-EEEEecCCCEEEEEe-----E
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS--VPVHRF-DQFTD--HG-GGGFHPAGNEVIINS-----E 1700 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg--k~I~kf-~gh~~--~V-sVaFSPdG~~LASGS-----e 1700 (1922)
.... +..-...+++|+|+|++|+++. .+||.++. ++.+.+ +.|.. .| |+.||++|++|++-+ +
T Consensus 311 k~~~-g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAG-GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCC-CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 1111 1122333499999999988665 89998643 343333 45655 55 999999999999988 6
Q ss_pred EEecCCC-eEEEEEcCCCc----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC
Q 000177 1701 VWDLRKF-RLLRSVPSLDQ----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD 1775 (1922)
Q Consensus 1701 IWDLrTg-klL~tl~gH~~----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk 1775 (1922)
+||++.+ +++.+..+... +.++|||+.++|++|... .+......+.++|..+|..+..+++.
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~-------------~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSA-------------PNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccc-------------cCCCCCceEEEEeccceeeEEEecCC
Confidence 9999985 56776666554 799999999999998421 11212346889999999999999985
Q ss_pred C-ceEEEEEcCCCceEEEEe
Q 000177 1776 R-CVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1776 r-~I~dLa~SPdds~LAVVe 1794 (1922)
. .|..+.|+|.=+.|.+..
T Consensus 457 ~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred CceEEEEeecchhhheeeec
Confidence 4 599999999777666553
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=220.46 Aligned_cols=230 Identities=19% Similarity=0.282 Sum_probs=185.8
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CCceeeeccCCCCeeEEEee
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS------------------SSPLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t------------------gk~l~tL~gHss~VtsLq~a 1560 (1922)
+.+.+...|. +.|+|+.|+|||++||+||.|+.|.||.... .++..++.+|...|..+ +
T Consensus 60 k~l~~m~~h~-~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv--~ 136 (942)
T KOG0973|consen 60 KHLCTMDDHD-GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV--N 136 (942)
T ss_pred hhheeecccc-CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee--c
Confidence 4456677899 9999999999999999999999999999762 12466789999999999 8
Q ss_pred ecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1561 LSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1561 fSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
|+|++.+|++++ |++|.|||..+ .+.+.++.+| ..+.|.|-|++|++- +.|++|+||++.+..+.+++..
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~t--F~~~~vl~~H~s~VKGvs~DP~Gky~ASq---sdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKT--FELLKVLRGHQSLVKGVSWDPIGKYFASQ---SDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred cCCCccEEEEecccceEEEEcccc--ceeeeeeecccccccceEECCccCeeeee---cCCceEEEEEcccceeeEeecc
Confidence 899999999965 99999999998 6888999987 679999999999998 8999999999988888888763
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc---------EEEEcCCCcceeeeccCCCce-EEEEecC------C-------
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG---------ILWDRRNSVPVHRFDQFTDHG-GGGFHPA------G------- 1692 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg---------rLWDlrtgk~I~kf~gh~~~V-sVaFSPd------G------- 1692 (1922)
+.-... .......+.|||||++|++.. .|.+-.+.+.-..|-||..++ ++.|+|. .
T Consensus 212 pf~~~~-~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 212 PFEESP-LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred chhhCC-CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 321110 111122399999999999654 688877778888899999998 9999972 1
Q ss_pred C----EEEEEe-----EEEecCCCeEEEEEc---CCCceeEEEccCCCEEEEEEccC
Q 000177 1693 N----EVIINS-----EVWDLRKFRLLRSVP---SLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1693 ~----~LASGS-----eIWDLrTgklL~tl~---gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
+ .+|+|+ .||....-+++..+. .+....++|+|||..|++++.+.
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence 1 456666 399998777765544 45558999999999999886443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=221.49 Aligned_cols=209 Identities=19% Similarity=0.285 Sum_probs=169.4
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWDl~t~~g 1586 (1922)
..|.+++|++ ++.+|++|+.||+|+|||+.+++.+..+.+|...|+++ .|+| ++.+|+++ .|++|++||+.+ +
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l--~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~ 608 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSI--DYSSADPTLLASGSDDGSVKLWSINQ--G 608 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEE--EEcCCCCCEEEEEcCCCEEEEEECCC--C
Confidence 5799999987 57899999999999999999999999999999999999 7886 77888885 599999999987 6
Q ss_pred CcceEecc---ceeEEEc-CCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCc--ceEEEEcCCCCeE
Q 000177 1587 GPMHSFEG---CKAARFS-NSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHA--YSQIHFSPSDTML 1659 (1922)
Q Consensus 1587 k~l~tf~g---h~sVaFS-PDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~--~~vVaFSPdG~lL 1659 (1922)
.++.++.. +.++.|+ +++.+|++| +.|++|++||+++++ .+.++. +|. +..+.|. ++.++
T Consensus 609 ~~~~~~~~~~~v~~v~~~~~~g~~latg---s~dg~I~iwD~~~~~~~~~~~~---------~h~~~V~~v~f~-~~~~l 675 (793)
T PLN00181 609 VSIGTIKTKANICCVQFPSESGRSLAFG---SADHKVYYYDLRNPKLPLCTMI---------GHSKTVSYVRFV-DSSTL 675 (793)
T ss_pred cEEEEEecCCCeEEEEEeCCCCCEEEEE---eCCCeEEEEECCCCCccceEec---------CCCCCEEEEEEe-CCCEE
Confidence 67766654 3778885 478999999 889999999998765 344443 454 4448887 67788
Q ss_pred eecc-----EEEEcCC------CcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc--------
Q 000177 1660 LWNG-----ILWDRRN------SVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP-------- 1714 (1922)
Q Consensus 1660 aSgg-----rLWDlrt------gk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~-------- 1714 (1922)
++++ ++||++. .+++++|.+|...+ ++.|+|++.+|++|+ .+|+......+.++.
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 8776 9999985 36788999999887 899999999999999 499987654443221
Q ss_pred -----CCC--ceeEEEccCCCEEEEEEc
Q 000177 1715 -----SLD--QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1715 -----gH~--~~sVaFSPdG~~LaSgs~ 1735 (1922)
.+. ..+++|+|+|.+|+++..
T Consensus 756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred ccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence 122 279999999999999853
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-17 Score=184.39 Aligned_cols=255 Identities=14% Similarity=0.200 Sum_probs=188.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE-EEe-cCCcEEEeccCCCCCCcceEecc---c
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL-LSS-SSQDVHLWNASSIAGGPMHSFEG---C 1595 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL-aSS-sDgtVkLWDl~t~~gk~l~tf~g---h 1595 (1922)
+..+++++.|+.|++||+.+++.+..+..|.. +.++ .|+|+++.+ +++ .++.|++||..+ ++.+..+.. .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l--~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGI--TLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSGPDP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCce--EECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCCCCc
Confidence 35788999999999999999999888876654 6778 789999876 444 589999999987 665555543 3
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcC
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRR 1669 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlr 1669 (1922)
..+.|+|+++.+++++ ..++.|++||+.+++.+..+. .++....++|+|+|++++++. .+||..
T Consensus 76 ~~~~~~~~g~~l~~~~--~~~~~l~~~d~~~~~~~~~~~--------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 76 ELFALHPNGKILYIAN--EDDNLVTVIDIETRKVLAEIP--------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred cEEEECCCCCEEEEEc--CCCCeEEEEECCCCeEEeEee--------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 6788999999776551 567899999999988777664 223345599999999988655 577998
Q ss_pred CCcceeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC---------ceeEEEccCCCEEEEEE
Q 000177 1670 NSVPVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD---------QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1670 tgk~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~---------~~sVaFSPdG~~LaSgs 1734 (1922)
+++.+..+.......++.|+|+|++|+.++ .+||+.+++.+..+..+. ...+.|+|+|++++.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 887766554333444899999999886544 499999998877664221 14689999999987663
Q ss_pred ccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1735 RRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1735 ~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
..+ ..+.+||..+++.+..+.....+..++|+|++.++++.. ..++.+++|++...
T Consensus 226 ~~~------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-----~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 226 GPA------------------NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTN-----GVSNDVSVIDVAAL 281 (300)
T ss_pred CCC------------------CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEc-----CCCCeEEEEECCCC
Confidence 211 235677777766665555566799999999999987653 12357889987543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=211.39 Aligned_cols=214 Identities=14% Similarity=0.204 Sum_probs=162.6
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC--------ceeeeccCCCCeeEEEeeecCCCc
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSS--------PLESCTSHQAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk--------~l~tL~gHss~VtsLq~afSpDG~ 1566 (1922)
.+..++.+|.+|. +.|++++|+|+ +.+|+||+.||+|+|||+.++. ++..+.+|...|.+| .|+|++.
T Consensus 62 ~r~~~v~~L~gH~-~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV--af~P~g~ 138 (568)
T PTZ00420 62 MRKPPVIKLKGHT-SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII--DWNPMNY 138 (568)
T ss_pred CCCceEEEEcCCC-CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE--EECCCCC
Confidence 3456788899999 99999999996 7899999999999999997642 344678999999999 8899887
Q ss_pred EE-EE-ecCCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1567 LL-LS-SSSQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1567 lL-aS-SsDgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
.+ ++ |.|++|+|||+++ ++.+..+. .+.+++|+|+|++|+++ +.|++|+|||+++++.+.++.
T Consensus 139 ~iLaSgS~DgtIrIWDl~t--g~~~~~i~~~~~V~SlswspdG~lLat~---s~D~~IrIwD~Rsg~~i~tl~------- 206 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIEN--EKRAFQINMPKKLSSLKWNIKGNLLSGT---CVGKHMHIIDPRKQEIASSFH------- 206 (568)
T ss_pred eEEEEEeCCCeEEEEECCC--CcEEEEEecCCcEEEEEECCCCCEEEEE---ecCCEEEEEECCCCcEEEEEe-------
Confidence 54 55 5699999999987 55555553 24889999999999988 789999999999999888775
Q ss_pred CCCCcce-------EEEEcCCCCeEeecc---------EEEEcCC-CcceeeeccCC--CceEEEE-ecCCCEEEEEe--
Q 000177 1642 GRGHAYS-------QIHFSPSDTMLLWNG---------ILWDRRN-SVPVHRFDQFT--DHGGGGF-HPAGNEVIINS-- 1699 (1922)
Q Consensus 1642 ~~gh~~~-------vVaFSPdG~lLaSgg---------rLWDlrt-gk~I~kf~gh~--~~VsVaF-SPdG~~LASGS-- 1699 (1922)
+|... ...|++++.+|+++| +|||+++ ++++..+..+. ..+...| .++|.++++|+
T Consensus 207 --gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 207 --IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred --cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 44432 134678999988755 7999995 66777664433 3333344 45588888886
Q ss_pred ---EEEecCCCeEEEEEcCC----CceeEEEccCC
Q 000177 1700 ---EVWDLRKFRLLRSVPSL----DQTTITFNARG 1727 (1922)
Q Consensus 1700 ---eIWDLrTgklL~tl~gH----~~~sVaFSPdG 1727 (1922)
++|++..+. +..+... ....++|.|.-
T Consensus 285 ~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 699998764 2333221 12688888853
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=194.05 Aligned_cols=227 Identities=19% Similarity=0.218 Sum_probs=186.2
Q ss_pred ec-CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1495 YS-RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1495 ~s-rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
|+ .+..+.++.||+ +.||||..+-+.++|+||+.|.++++||+.+|+++.+++ -..+|..+ .|+.+|++++.+.|
T Consensus 38 ~s~nGerlGty~GHt-GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~--~F~~~gn~~l~~tD 113 (327)
T KOG0643|consen 38 YSLNGERLGTYDGHT-GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV--DFSFGGNLILASTD 113 (327)
T ss_pred EecCCceeeeecCCC-ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE--eeccCCcEEEEEeh
Confidence 44 677789999999 999999999999999999999999999999999999986 35789999 88999998888643
Q ss_pred ------CcEEEeccCCCC-----CCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1574 ------QDVHLWNASSIA-----GGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1574 ------gtVkLWDl~t~~-----gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
+.|.++|++... ..|...+.. .+.+-|.|-+++|++| ..||.|.+||+++|+....-.
T Consensus 114 ~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G---he~G~is~~da~~g~~~v~s~---- 186 (327)
T KOG0643|consen 114 KQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG---HEDGSISIYDARTGKELVDSD---- 186 (327)
T ss_pred hhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe---cCCCcEEEEEcccCceeeech----
Confidence 468999998421 344555543 4788999999999999 899999999999986544322
Q ss_pred cccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--E-----------
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--E----------- 1700 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--e----------- 1700 (1922)
..+.+.++.+.|+|+..++++++ ++||+++-.++++|.......+.+++|...+++.|+ +
T Consensus 187 --~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~ 264 (327)
T KOG0643|consen 187 --EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRA 264 (327)
T ss_pred --hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccc
Confidence 12456677799999999999998 999999999999997665555999999988888887 2
Q ss_pred ------EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1701 ------VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1701 ------IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
+|++-..+.+..+++|-. ++|+|+|+|+..+++.
T Consensus 265 GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 265 GKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred cchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 444444455778889976 9999999999888883
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-19 Score=203.84 Aligned_cols=265 Identities=16% Similarity=0.247 Sum_probs=206.4
Q ss_pred EEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEec
Q 000177 1502 RTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWN 1580 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWD 1580 (1922)
..|.||. ++|.|++=+|.. ..+++|+.||.|+|||+...++..+|.+|.+.|..| .++. +.++.+|+|.+|+.|.
T Consensus 60 ~~L~gHr-dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi--~v~~-~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 60 GSLDGHR-DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGI--CVTQ-TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhccccc-cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeE--Eecc-cceEEecCCcceeeee
Confidence 4568999 999999999976 789999999999999999999999999999999999 5554 6677778999999999
Q ss_pred cCCCCCCcceEeccc---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1581 ASSIAGGPMHSFEGC---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
+. +.+++++-+. ..+.-+..+..|+|| + ..|.|||.+...++.++.. .-....++.|+|...
T Consensus 136 ~~---~~p~~tilg~s~~~gIdh~~~~~~FaTc---G--e~i~IWD~~R~~Pv~smsw-------G~Dti~svkfNpvET 200 (433)
T KOG0268|consen 136 ID---GPPLHTILGKSVYLGIDHHRKNSVFATC---G--EQIDIWDEQRDNPVSSMSW-------GADSISSVKFNPVET 200 (433)
T ss_pred cc---CCcceeeecccccccccccccccccccc---C--ceeeecccccCCccceeec-------CCCceeEEecCCCcc
Confidence 97 4578887653 556666667888988 3 3499999998888887761 123456699999886
Q ss_pred eEe-ecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE-----EEecCC-CeEEEEEcCCCc--eeEEE
Q 000177 1658 MLL-WNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE-----VWDLRK-FRLLRSVPSLDQ--TTITF 1723 (1922)
Q Consensus 1658 lLa-Sgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe-----IWDLrT-gklL~tl~gH~~--~sVaF 1723 (1922)
.|+ +++ .|||+++++++++.........++|+|.+-.++++++ .+|++. .+++....+|.. .+|.|
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc
Confidence 655 443 8999999999988865555558999998777788874 667775 356777778876 79999
Q ss_pred ccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--CceEEEEEcCCCceEEEEecCCCCCc
Q 000177 1724 NARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--RCVLDFATERTDSFVGLITMDDQEDM 1801 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--r~I~dLa~SPdds~LAVVe~dds~d~ 1801 (1922)
||.|+-+++++ ++.+++++.......--..-.+ ..|+++.|+-+.+||. ++..
T Consensus 281 sptG~Efvsgs-------------------yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~------SGSd 335 (433)
T KOG0268|consen 281 SPTGQEFVSGS-------------------YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYII------SGSD 335 (433)
T ss_pred CCCcchhcccc-------------------ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEE------ecCC
Confidence 99999999985 5566777765544332222223 3699999999999976 3445
Q ss_pred cceEEEEEe
Q 000177 1802 FSSARIYEI 1810 (1922)
Q Consensus 1802 dSsVRLyEV 1810 (1922)
+..||+|..
T Consensus 336 d~nvRlWka 344 (433)
T KOG0268|consen 336 DGNVRLWKA 344 (433)
T ss_pred Ccceeeeec
Confidence 578999964
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-17 Score=206.76 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=162.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc----------e---eeeccCCCCeeEEEeeecC-CCcEEEEe-cCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP----------L---ESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQ 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~----------l---~tL~gHss~VtsLq~afSp-DG~lLaSS-sDg 1574 (1922)
..|+...+++|+..+++++.+..+..|+...+.. . ..+.+|.+.|+++ .|+| ++++|+++ .|+
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v--~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDV--AFNPFDPQKLFTASEDG 98 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEE--EEcCCCCCEEEEEeCCC
Confidence 4456666777777777777777777777543321 1 2468999999999 8898 78888885 599
Q ss_pred cEEEeccCCCC-----CCcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1575 DVHLWNASSIA-----GGPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1575 tVkLWDl~t~~-----gk~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+|+|||+.... ..++..+.+| .+++|+|++ ++|+++ +.|++|+|||+.+++.+..+. .+.
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg---s~DgtVrIWDl~tg~~~~~l~-------~h~ 168 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA---GADMVVNVWDVERGKAVEVIK-------CHS 168 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE---eCCCEEEEEECCCCeEEEEEc-------CCC
Confidence 99999997521 1356677775 789999985 688998 889999999999998887775 122
Q ss_pred CcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEe---------EEEecCCCe
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINS---------EVWDLRKFR 1708 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGS---------eIWDLrTgk 1708 (1922)
..+..++|+|+|.+|++++ ++||+++++.+.++.+|.... .+.|+|++..+++++ ++||+++..
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 3345599999999999887 899999999999999887654 788999988877653 599998754
Q ss_pred -EEEEEcCCCc---eeEEEccCCCEEEEEE
Q 000177 1709 -LLRSVPSLDQ---TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1709 -lL~tl~gH~~---~sVaFSPdG~~LaSgs 1734 (1922)
++..+..+.. ....|++++.+|+++.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 4444433322 4567999999999875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-19 Score=196.60 Aligned_cols=225 Identities=14% Similarity=0.181 Sum_probs=194.7
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dgt 1575 (1922)
++.-+.+|.||. +.||.+.++.+...-++++.|-+.+|||.-+|..+.+|. |..-|..+ +|+.|.++|++|. +.-
T Consensus 48 tgdwigtfeghk-gavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~--af~~ds~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHK-GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAV--AFSQDSNYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccC-cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeE--EecccchhhhccchHHH
Confidence 344578999999 999999999999999999999999999999999999886 88899999 8999999999965 889
Q ss_pred EEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
++|||++.+ ..+...+.+| +.+.|....+.|++. +.|++|++||.+++..++++. ..+.+.++.
T Consensus 124 lrvfdln~p-~App~E~~ghtg~Ir~v~wc~eD~~iLSS---add~tVRLWD~rTgt~v~sL~--------~~s~VtSlE 191 (334)
T KOG0278|consen 124 LRVFDLNRP-KAPPKEISGHTGGIRTVLWCHEDKCILSS---ADDKTVRLWDHRTGTEVQSLE--------FNSPVTSLE 191 (334)
T ss_pred hhhhhccCC-CCCchhhcCCCCcceeEEEeccCceEEee---ccCCceEEEEeccCcEEEEEe--------cCCCCccee
Confidence 999999874 3345556554 778999988999997 889999999999999999987 467788899
Q ss_pred EcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE-----EEecCCCeEEEEE-cCCCc--e
Q 000177 1652 FSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE-----VWDLRKFRLLRSV-PSLDQ--T 1719 (1922)
Q Consensus 1652 FSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe-----IWDLrTgklL~tl-~gH~~--~ 1719 (1922)
++++|++|.+.- ++||..+-.+++.++...+.-+...+|+..+++.|++ .||..|+..+..+ ++|.. .
T Consensus 192 vs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 192 VSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred eccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 999999987543 9999999999999987766669999999988888884 6799999988886 78876 7
Q ss_pred eEEEccCCCEEEEEEccC
Q 000177 1720 TITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1720 sVaFSPdG~~LaSgs~~d 1737 (1922)
||.|+|+|...++++.+.
T Consensus 272 cVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDG 289 (334)
T ss_pred EEEECCCCceeeccCCCc
Confidence 999999999999886444
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-17 Score=203.75 Aligned_cols=251 Identities=18% Similarity=0.217 Sum_probs=192.6
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-CceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS-SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSI 1584 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg-k~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~ 1584 (1922)
.|+ .+.+.++|.|+|++|+|++.||.|++|+.... ..-.++.-|...|.+++ .. .+.+++++.+++|.+|.+..+
T Consensus 11 aht-~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia--~~-s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHT-GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA--CY-SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hcc-CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe--ec-ccceEEeeccceEEEeeCCCC
Confidence 588 88999999999999999999999999998766 33344444888999993 32 224444567999999999873
Q ss_pred CC-CcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEe
Q 000177 1585 AG-GPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLL 1660 (1922)
Q Consensus 1585 ~g-k~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLa 1660 (1922)
.. ..+..|.- .++++|+.+|++++.| +.|-.|++-++.+.....++. +|..++ +.|+|.+++|+
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaag---sdD~~vK~~~~~D~s~~~~lr---------gh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAG---SDDTAVKLLNLDDSSQEKVLR---------GHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEee---cCceeEEEEeccccchheeec---------ccCCceeeeeEcCCCCEEE
Confidence 22 24555553 5899999999999999 899999999999888888775 676666 99999999999
Q ss_pred ecc-----EEEEcCCCcceeeeccCC-------Cce--EEEEecCC-CEEEEEe----EEEecCCCeEEEEEcCCCc---
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFT-------DHG--GGGFHPAG-NEVIINS----EVWDLRKFRLLRSVPSLDQ--- 1718 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~-------~~V--sVaFSPdG-~~LASGS----eIWDLrTgklL~tl~gH~~--- 1718 (1922)
+.+ ++||+.++.+.+++.+.. ..+ .++|||+| .+++.+. ++|+..++.....+.....
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence 655 999999998877775432 122 68999995 4555555 5999999888887764322
Q ss_pred -eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1719 -TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1719 -~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
+.+.|+|+|.||+++. ++..+.+|+..+ ..+....+.|..++|.|+...|.++.
T Consensus 235 ~~~~~wsPnG~YiAAs~-------------------~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAAST-------------------LDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred eEEEEEcCCCcEEeeec-------------------cCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEe
Confidence 7999999999999984 233455666544 22345567899999999998887775
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=182.29 Aligned_cols=255 Identities=12% Similarity=0.126 Sum_probs=190.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e-
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S- 1571 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S- 1571 (1922)
....+.++++..|. .+.+++|+|+|+.+ ++++.++.|++||+.+++....+..|.. +..+ .|+|+++.+++ +
T Consensus 18 ~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~--~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 18 TATLEVTRTFPVGQ--RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF--ALHPNGKILYIANE 92 (300)
T ss_pred CCCCceEEEEECCC--CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE--EECCCCCEEEEEcC
Confidence 44566777777665 36789999999976 6778899999999999988877765544 4566 78999987755 3
Q ss_pred cCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSD-RGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
.++.|++||+.+ .+.+..+.. ..+++|+|+|++++++ ..+ ..+.+||..+++....+. .++..
T Consensus 93 ~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~---~~~~~~~~~~d~~~~~~~~~~~--------~~~~~ 159 (300)
T TIGR03866 93 DDNLVTVIDIET--RKVLAEIPVGVEPEGMAVSPDGKIVVNT---SETTNMAHFIDTKTYEIVDNVL--------VDQRP 159 (300)
T ss_pred CCCeEEEEECCC--CeEEeEeeCCCCcceEEECCCCCEEEEE---ecCCCeEEEEeCCCCeEEEEEE--------cCCCc
Confidence 489999999987 666666652 3789999999999987 433 467888999887765543 12334
Q ss_pred eEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCC--------CceEEEEecCCCEEEEEe------EEEecCCC
Q 000177 1648 SQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFT--------DHGGGGFHPAGNEVIINS------EVWDLRKF 1707 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~--------~~VsVaFSPdG~~LASGS------eIWDLrTg 1707 (1922)
..+.|+|++++++..+ ++||+.+++.+..+..+. ....+.|+|+|++++++. .+||++++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 4589999999875322 899999998877664321 123688999999865542 49999999
Q ss_pred eEEEEEc-CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC
Q 000177 1708 RLLRSVP-SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1708 klL~tl~-gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP 1785 (1922)
+.+..+. ++..++++|+|+|++|+++.. ....+.+||..+...+.++......+.++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 EVLDYLLVGQRVWQLAFTPDEKYLLTTNG------------------VSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred cEEEEEEeCCCcceEEECCCCCEEEEEcC------------------CCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 8887654 444589999999999998732 23457889988888888888777778777764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=209.09 Aligned_cols=228 Identities=18% Similarity=0.299 Sum_probs=198.9
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
.|.....+.++++.. +.+.|+.|-|.++++++|...|.+.|||+.+...+.++.+|.+.|+++ +.+||++.++++
T Consensus 398 iWn~~t~kciRTi~~---~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi--~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITC---GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI--SLSPDNKGFVTG 472 (888)
T ss_pred EEEccCcceeEEecc---ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee--eecCCCCceEEe
Confidence 344566888888865 569999999999999999999999999999999999999999999999 889999999885
Q ss_pred -cCCcEEEeccCCCCC---Ccc--------eEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1572 -SSQDVHLWNASSIAG---GPM--------HSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~g---k~l--------~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
.|.+|++||+..... ... ++++ .+.|+.+||||++++.+ --|++|+||-+.+-+...++.
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs---LLdnTVkVyflDtlKFflsLY-- 547 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS---LLDNTVKVYFLDTLKFFLSLY-- 547 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE---eccCeEEEEEecceeeeeeec--
Confidence 599999999864211 111 1111 25899999999999998 889999999999988877775
Q ss_pred cccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1637 SVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1637 s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
||.-++ +..+||+++++|++ ++|-+.-|.|-+.|-+|.+.| ++.|-|....+.+++ +-||
T Consensus 548 -------GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 548 -------GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred -------ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 776666 88999999999999 999999999999999999998 999999999999999 4899
Q ss_pred cCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1704 LRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
-..++.++++.+|.. ++++.+|+|.++++++++
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence 999999999999987 999999999999999643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.4e-19 Score=201.08 Aligned_cols=200 Identities=21% Similarity=0.338 Sum_probs=165.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
..|+|+.+. ...+++|..|.+|+|||.++..+++.+.||++.|.|+++ +.++|++| +|.+|++||+++ +++
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy----d~rviisGSSDsTvrvWDv~t--ge~ 269 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY----DERVIVSGSSDSTVRVWDVNT--GEP 269 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec----cceEEEecCCCceEEEEeccC--Cch
Confidence 679999985 668999999999999999999999999999999999954 77788885 599999999999 899
Q ss_pred ceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeec
Q 000177 1589 MHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWN 1662 (1922)
Q Consensus 1589 l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSg 1662 (1922)
+.++-+| ..+.|+ ..+++++ +.|.+|.+||+.....+... ....||...+ +.|+ +++++++
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtc---SkDrsiaVWdm~sps~it~r------rVLvGHrAaVNvVdfd--~kyIVsA 336 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTC---SKDRSIAVWDMASPTDITLR------RVLVGHRAAVNVVDFD--DKYIVSA 336 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEe---cCCceeEEEeccCchHHHHH------HHHhhhhhheeeeccc--cceEEEe
Confidence 8888766 445665 5789999 99999999999875432211 1123565444 6664 5699887
Q ss_pred c-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCE
Q 000177 1663 G-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDV 1729 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~ 1729 (1922)
+ ++|++.++..++++.+|...| |+.| +|+++++|| ++||+..|.+++.+.||.. .++.|+. +.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--kr 412 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KR 412 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ce
Confidence 7 999999999999999999888 6555 689999999 6999999999999999988 7999964 67
Q ss_pred EEEEE
Q 000177 1730 IYAIL 1734 (1922)
Q Consensus 1730 LaSgs 1734 (1922)
|++|.
T Consensus 413 IVSGa 417 (499)
T KOG0281|consen 413 IVSGA 417 (499)
T ss_pred eeecc
Confidence 77774
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=201.91 Aligned_cols=262 Identities=16% Similarity=0.219 Sum_probs=208.3
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEec
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWN 1580 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWD 1580 (1922)
+..|. +.|..+.|-++...|++|+.|..|++|++...+ ...++.|..++|+.+ .|.++++.+++ +.|+.+++|+
T Consensus 171 ld~h~-gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~--d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHE-GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSI--DFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhccc-cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCccee--eecCCCceEEeecCCCceeeee
Confidence 45688 999999999998999999999999999998776 567888999999999 88888887777 6799999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+.. .+..+++.+| +++.|......+++| +.|.+|++||+....|..++. .+...+.+..+ .
T Consensus 248 vd~--~r~~~TLsGHtdkVt~ak~~~~~~~vVsg---s~DRtiK~WDl~k~~C~kt~l--------~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 248 VDS--LRLRHTLSGHTDKVTAAKFKLSHSRVVSG---SADRTIKLWDLQKAYCSKTVL--------PGSQCNDIVCS--I 312 (459)
T ss_pred ccc--hhhhhhhcccccceeeehhhccccceeec---cccchhhhhhhhhhheecccc--------ccccccceEec--c
Confidence 998 8888999997 677887776668888 999999999999988888764 12333334444 4
Q ss_pred CeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC------CCcee
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS------LDQTT 1720 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g------H~~~s 1720 (1922)
..++++. ++||++++.++.....+....++..+++|..|.+++ ++.|+++....+++.. ++.+.
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence 4555555 999999999999988877444999999999999999 4999999998888763 34479
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc---CCceEEEEEcCCCceEEEEecCC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV---DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv---kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
+.|||++.|+++|+ .+.++++|+..+.+....... ...|..++|+|.|..+..+.
T Consensus 393 vvfSpd~~YvaAGS-------------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad--- 450 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGS-------------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD--- 450 (459)
T ss_pred eEECCCCceeeecc-------------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc---
Confidence 99999999999995 334556666555554444333 22599999999999887553
Q ss_pred CCCccceEEEE
Q 000177 1798 QEDMFSSARIY 1808 (1922)
Q Consensus 1798 s~d~dSsVRLy 1808 (1922)
....+++|
T Consensus 451 ---k~~~v~lW 458 (459)
T KOG0288|consen 451 ---KQKAVTLW 458 (459)
T ss_pred ---CCcceEec
Confidence 23456666
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=208.19 Aligned_cols=268 Identities=16% Similarity=0.230 Sum_probs=215.9
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee-eccCCCCeeEEEeeecCCCcEEEEec-CCcEEE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES-CTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHL 1578 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t-L~gHss~VtsLq~afSpDG~lLaSSs-DgtVkL 1578 (1922)
.+.+.+|.+..|.|..|. +.++++|+.|++|++||..++..+.+ +.||.+.|+++ .+..-+.+|++|+ |.++++
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l--~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGL--AFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeE--EEecCCCEEEEEecCCcEEe
Confidence 455666554789999998 66899999999999999999999988 99999999999 5554567777765 999999
Q ss_pred eccCCCCCCcceEecccee--EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1579 WNASSIAGGPMHSFEGCKA--ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~gh~s--VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
||+.+ +.|.+++.+|.+ .+++-.+.++++| +.|.+|++|++.+++++.++. +|...+-+..-++
T Consensus 276 Wd~~s--g~C~~~l~gh~stv~~~~~~~~~~~sg---s~D~tVkVW~v~n~~~l~l~~---------~h~~~V~~v~~~~ 341 (537)
T KOG0274|consen 276 WDCST--GECTHSLQGHTSSVRCLTIDPFLLVSG---SRDNTVKVWDVTNGACLNLLR---------GHTGPVNCVQLDE 341 (537)
T ss_pred EecCC--CcEEEEecCCCceEEEEEccCceEeec---cCCceEEEEeccCcceEEEec---------cccccEEEEEecC
Confidence 99998 999999999843 3344456677776 899999999999999999885 5777775555568
Q ss_pred CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC-eEEEEEcCCCceeEEEc
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF-RLLRSVPSLDQTTITFN 1724 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg-klL~tl~gH~~~sVaFS 1724 (1922)
.++++++ ++||+.++++++++.+|+..| ++.+.+. .++++|+ ++||+++. +++.++.+|....-.+.
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~ 420 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL 420 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc
Confidence 8999887 999999999999999999999 8887776 8899998 69999999 99999999988555555
Q ss_pred cCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--CceEEEEEcCCCceEEEEecCCCCCcc
Q 000177 1725 ARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--RCVLDFATERTDSFVGLITMDDQEDMF 1802 (1922)
Q Consensus 1725 PdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--r~I~dLa~SPdds~LAVVe~dds~d~d 1802 (1922)
..+++|.++. .+..+++||..++..+.++... ..|..+++. +..+++.. .+
T Consensus 421 ~~~~~Lvs~~-------------------aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~-------~~ 473 (537)
T KOG0274|consen 421 LRDNFLVSSS-------------------ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSS-------DD 473 (537)
T ss_pred cccceeEecc-------------------ccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEe-------cC
Confidence 5677888773 4457889999999998888874 567777766 23333322 34
Q ss_pred ceEEEEEecCCC
Q 000177 1803 SSARIYEIGRRR 1814 (1922)
Q Consensus 1803 SsVRLyEVGr~r 1814 (1922)
+.+++|++....
T Consensus 474 ~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 474 GSVKLWDLRSGT 485 (537)
T ss_pred CeeEEEecccCc
Confidence 778999775443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=202.91 Aligned_cols=212 Identities=16% Similarity=0.278 Sum_probs=182.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSI 1584 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~ 1584 (1922)
+. ..|+++.|+++|.+|++|..+|.|.|||..+.+.+.++.+ |...|-++ +|+ +..+.+|+ |+.|..||++.
T Consensus 216 ~~-~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l--aW~--~~~lssGsr~~~I~~~dvR~- 289 (484)
T KOG0305|consen 216 GE-ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL--AWN--SSVLSSGSRDGKILNHDVRI- 289 (484)
T ss_pred CC-CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE--ecc--CceEEEecCCCcEEEEEEec-
Confidence 45 8899999999999999999999999999999999999988 99999999 564 56777754 99999999997
Q ss_pred CCCcce-Eeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCC-C
Q 000177 1585 AGGPMH-SFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPS-D 1656 (1922)
Q Consensus 1585 ~gk~l~-tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPd-G 1656 (1922)
.+... ++.+| ..+.|++|++++++| +.|+.+.|||......+.++. +|...+ ++|+|- .
T Consensus 290 -~~~~~~~~~~H~qeVCgLkws~d~~~lASG---gnDN~~~Iwd~~~~~p~~~~~---------~H~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 290 -SQHVVSTLQGHRQEVCGLKWSPDGNQLASG---GNDNVVFIWDGLSPEPKFTFT---------EHTAAVKALAWCPWQS 356 (484)
T ss_pred -chhhhhhhhcccceeeeeEECCCCCeeccC---CCccceEeccCCCccccEEEe---------ccceeeeEeeeCCCcc
Confidence 33333 35555 668999999999999 899999999998777777775 576666 999995 4
Q ss_pred CeEeecc-------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-------EEEecCCCeEEEEEcCCCc--ee
Q 000177 1657 TMLLWNG-------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-------EVWDLRKFRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1657 ~lLaSgg-------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-------eIWDLrTgklL~tl~gH~~--~s 1720 (1922)
.+|+++| ++||..+|+.+...+...+..++.|++..+.|+++. .||+..+.+.+..+.+|.. ..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~ 436 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY 436 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE
Confidence 6777777 999999999999998877777999999999998887 4999999999999999988 69
Q ss_pred EEEccCCCEEEEEEccC
Q 000177 1721 ITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d 1737 (1922)
+++||+|..|+++..+.
T Consensus 437 la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADE 453 (484)
T ss_pred EEECCCCCEEEEecccC
Confidence 99999999999985433
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=193.32 Aligned_cols=226 Identities=11% Similarity=0.169 Sum_probs=192.6
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
..|....++...++.||. ..|..++||+.-.||++++.|+.|+-||+...+.++.+.||-+.|+++ ..+|.-..|++
T Consensus 176 kIwDlatg~LkltltGhi-~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L--~lhPTldvl~t 252 (460)
T KOG0285|consen 176 KIWDLATGQLKLTLTGHI-ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL--DLHPTLDVLVT 252 (460)
T ss_pred EEEEcccCeEEEeecchh-heeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE--eccccceeEEe
Confidence 345567788889999999 999999999999999999999999999999999999999999999999 88998888988
Q ss_pred e-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 S-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
| .|.+++|||+++ ...++.+.|| ..+.+.|..-.+++| +.|++|++||++.|+...++. .|
T Consensus 253 ~grDst~RvWDiRt--r~~V~~l~GH~~~V~~V~~~~~dpqvit~---S~D~tvrlWDl~agkt~~tlt---------~h 318 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRT--RASVHVLSGHTNPVASVMCQPTDPQVITG---SHDSTVRLWDLRAGKTMITLT---------HH 318 (460)
T ss_pred cCCcceEEEeeecc--cceEEEecCCCCcceeEEeecCCCceEEe---cCCceEEEeeeccCceeEeee---------cc
Confidence 5 599999999998 7789999997 568888877778998 999999999999999988886 34
Q ss_pred cce--EEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1646 AYS--QIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1646 ~~~--vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
... .++.+|....+++++ +-|++..|..++.+.+|+..+ ++....||- +++|+ -+||.+++...+.+
T Consensus 319 kksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred cceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccc
Confidence 444 499999999999998 899999999999999999988 777777765 45555 28999988765554
Q ss_pred c---CC---Cc----eeEEEccCCCEEEEEE
Q 000177 1714 P---SL---DQ----TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1714 ~---gH---~~----~sVaFSPdG~~LaSgs 1734 (1922)
. .. .. ...+|...|..|+++-
T Consensus 398 ~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 398 QTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred cccccCCccccccceeEEeecccCceEEecc
Confidence 2 11 11 5778888999999883
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=200.45 Aligned_cols=237 Identities=18% Similarity=0.233 Sum_probs=192.0
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEee
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~a 1560 (1922)
.||.+.....|+....+...+.+|.|-. +.|+.+.|.++++++++.++|+.+++|+++..+...++.||++.|+++ .
T Consensus 192 tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a--k 268 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA--K 268 (459)
T ss_pred hcchhhhhhhhhcccchhhhhhhhhccC-CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee--h
Confidence 3455555555555555566778888887 899999999999999999999999999999999999999999999999 5
Q ss_pred ecCCCcEEEEe-cCCcEEEeccCCCCCCcceEec-c--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1561 LSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFE-G--CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1561 fSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~-g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
|.....-++++ .|.+||+||+.. ..|..++- + ++.|+.+ +..+++| ..|++|++||+++..+...++
T Consensus 269 ~~~~~~~vVsgs~DRtiK~WDl~k--~~C~kt~l~~S~cnDI~~~--~~~~~Sg---H~DkkvRfwD~Rs~~~~~sv~-- 339 (459)
T KOG0288|consen 269 FKLSHSRVVSGSADRTIKLWDLQK--AYCSKTVLPGSQCNDIVCS--ISDVISG---HFDKKVRFWDIRSADKTRSVP-- 339 (459)
T ss_pred hhccccceeeccccchhhhhhhhh--hheeccccccccccceEec--ceeeeec---ccccceEEEeccCCceeeEee--
Confidence 55555547775 599999999997 66665542 2 3445544 5567777 889999999999999988886
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccC-----CCceEEEEecCCCEEEEEe-----EE
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF-----TDHGGGGFHPAGNEVIINS-----EV 1701 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh-----~~~VsVaFSPdG~~LASGS-----eI 1701 (1922)
.+..+..+..+++|..|++++ .+.|+++....+.|... .++..++|||++.|+++|| .|
T Consensus 340 ------~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 340 ------LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred ------cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence 344666799999999999888 89999998887777543 2344899999999999999 59
Q ss_pred EecCCCeEEEEEcCCC----ceeEEEccCCCEEEEEEc
Q 000177 1702 WDLRKFRLLRSVPSLD----QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~----~~sVaFSPdG~~LaSgs~ 1735 (1922)
|++.++++.+.+.... .++++|+|.|..++++.+
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 9999999988887432 279999999999999853
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=197.87 Aligned_cols=191 Identities=17% Similarity=0.342 Sum_probs=161.9
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSS 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsD 1573 (1922)
.......++|.||+ +.|.|+.|. .+.|++||.|.+|+|||+++|+++.++.+|...|..+ .|+ +.++++ |.|
T Consensus 224 ~n~~~c~~~L~GHt-GSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl--rf~--ng~mvtcSkD 296 (499)
T KOG0281|consen 224 KNSLECLKILTGHT-GSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL--RFS--NGYMVTCSKD 296 (499)
T ss_pred cccHHHHHhhhcCC-CcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE--EEe--CCEEEEecCC
Confidence 34556678899999 999999996 5699999999999999999999999999999999999 674 346666 459
Q ss_pred CcEEEeccCCCCC-CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1574 QDVHLWNASSIAG-GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~g-k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.++.+||+..+.. .+.+.+.|| +.+.|+ .++|+++ +.|.+|++|++.|+.++.++. +|...
T Consensus 297 rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsA---SgDRTikvW~~st~efvRtl~---------gHkRG 362 (499)
T KOG0281|consen 297 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSA---SGDRTIKVWSTSTCEFVRTLN---------GHKRG 362 (499)
T ss_pred ceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEe---cCCceEEEEeccceeeehhhh---------ccccc
Confidence 9999999987321 123445565 566664 6799999 899999999999999999986 89988
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
+.+.--.|+++++++ ++||+..|.+++.+.||..-+ ++.|. .+.|++|. +|||+.++.
T Consensus 363 IAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 363 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred ceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEeccccc
Confidence 888888999999998 999999999999999999998 89985 47889888 699998753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=196.19 Aligned_cols=252 Identities=19% Similarity=0.274 Sum_probs=201.6
Q ss_pred EecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1503 TCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
+.+.| +.|++++|||... -+|+.+ .-.+.||+..+....+++.-....|+++ .|-.||+++++|+ .|.|+|||
T Consensus 22 ~~ke~--~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~--~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 22 VHKEH--NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSV--DFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred ccccc--CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEE--EeecCCeEEEccCCcCcEEEec
Confidence 34455 4899999999443 233332 3468999998888888887778999999 8889999999986 89999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEc
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFS 1653 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFS 1653 (1922)
+.+ ...++.+.+| +.+.|+|.+ ..|++| ++|+.+++||+.+......+. +|...+ .+|+
T Consensus 97 ~k~--r~iLR~~~ah~apv~~~~f~~~d~t~l~s~---sDd~v~k~~d~s~a~v~~~l~---------~htDYVR~g~~~ 162 (487)
T KOG0310|consen 97 MKS--RVILRQLYAHQAPVHVTKFSPQDNTMLVSG---SDDKVVKYWDLSTAYVQAELS---------GHTDYVRCGDIS 162 (487)
T ss_pred ccc--HHHHHHHhhccCceeEEEecccCCeEEEec---CCCceEEEEEcCCcEEEEEec---------CCcceeEeeccc
Confidence 765 4456777776 678999965 566666 889999999999988644554 677665 8899
Q ss_pred CCCC-eEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCC-eEEEEEcCCCc--
Q 000177 1654 PSDT-MLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKF-RLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1654 PdG~-lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTg-klL~tl~gH~~-- 1718 (1922)
|-.. +++||| ++||+++. ..+..| .|..+| ++.|-|.|..|++++ +|||+-+| +++.....|..
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceE
Confidence 8765 677877 99999987 566666 466777 999999999999988 79999965 55555555766
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEE
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVV 1793 (1922)
+|+.+..++..|++++ ++...++|+..+|+-+.++....+|.+++++|+++.+++-
T Consensus 242 TcL~l~s~~~rLlS~s-------------------LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGS-------------------LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEEeecCCceEeecc-------------------cccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence 8999999999999984 5566889999999999999999999999999999877654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-17 Score=190.55 Aligned_cols=262 Identities=17% Similarity=0.289 Sum_probs=206.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l 1589 (1922)
.++++...|....++||+.|.++.++|..+++.+.+|+||+..|+.+ .|+++...+++ +.|..|+||.... ....
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v--~~~~~~~~v~~aSad~~i~vws~~~--~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSV--KFHKDLDTVITASADEIIRVWSVPL--SSEP 296 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEE--EeccchhheeecCCcceEEeecccc--ccCc
Confidence 46777777777899999999999999999999999999999999999 89999888888 5699999999976 3333
Q ss_pred eEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1590 HSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1590 ~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
..... ++.+..+|+|.||+++ +.|+++.+.|++++.++....+. ..+-...+++|+|||-++.++.
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fsd~~~g~~lt~vs~~-----~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFSDISSGSQLTVVSDE-----TSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cccccccccceeeeeccCCcEEEEe---cCCceEEEEEccCCcEEEEEeec-----cccceeEEeeEcCCceEEeccCCC
Confidence 33333 4889999999999999 89999999999999998877521 0122345599999999999887
Q ss_pred ---EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC---ceeEEEccCCCEEE
Q 000177 1664 ---ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD---QTTITFNARGDVIY 1731 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~---~~sVaFSPdG~~La 1731 (1922)
++||+.++..+.+|.+|...| .+.|+-||.||+++. ++||+|..+..+++.-.+ ..++.|.+.|.+|+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence 999999999999999999999 999999999999998 599999988888887555 38999999999999
Q ss_pred EEEccCchhhhhhhcccccccCCcceEEEEe--cCCCceeeeeccCC-ceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1732 AILRRNLEDVMSAVHTRRVKHPLFAAFRTVD--AINYSDIATIPVDR-CVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1732 Sgs~~d~~dv~s~lh~rr~ksp~~ssFrt~D--a~dys~IaTidvkr-~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
++. .+... ..++ ...|..+..+.... ....+.|.....+++.. .++...++|
T Consensus 449 ~~g-~~l~V------------------y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~------smd~~l~~~ 503 (506)
T KOG0289|consen 449 IAG-SDLQV------------------YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAST------SMDAILRLY 503 (506)
T ss_pred eec-ceeEE------------------EEEecccccceeeehhhhcccccceeeecccceEEeec------cchhheEEe
Confidence 882 11111 1111 12344444444333 45666777778888754 355567776
Q ss_pred E
Q 000177 1809 E 1809 (1922)
Q Consensus 1809 E 1809 (1922)
.
T Consensus 504 a 504 (506)
T KOG0289|consen 504 A 504 (506)
T ss_pred e
Confidence 5
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-17 Score=192.13 Aligned_cols=226 Identities=20% Similarity=0.270 Sum_probs=194.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS- 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS- 1570 (1922)
.|.+..-+.+.+|+||. -.|+.+.|+|+...+++++.|..|+||.+....+......|..+|+.+ ..+|.|.||++
T Consensus 245 ~~d~~s~q~l~~~~Gh~-kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l--s~h~tgeYllsA 321 (506)
T KOG0289|consen 245 LFDKPSNQILATLKGHT-KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL--SLHPTGEYLLSA 321 (506)
T ss_pred EEecchhhhhhhccCcc-eEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceee--eeccCCcEEEEe
Confidence 34455667788999999 999999999999999999999999999998888888889999999999 88999999998
Q ss_pred ecCCcEEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+.|++..+.|+++ +.++..... .++.+|||||..|.+| ..|+.|+|||+.++..+..|+ +
T Consensus 322 s~d~~w~Fsd~~~--g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg---t~d~~vkiwdlks~~~~a~Fp---------g 387 (506)
T KOG0289|consen 322 SNDGTWAFSDISS--GSQLTVVSDETSDVEYTSAAFHPDGLIFGTG---TPDGVVKIWDLKSQTNVAKFP---------G 387 (506)
T ss_pred cCCceEEEEEccC--CcEEEEEeeccccceeEEeeEcCCceEEecc---CCCceEEEEEcCCccccccCC---------C
Confidence 5699999999998 666654433 4889999999999998 899999999999988888776 6
Q ss_pred CcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC--ceEEEEecCCCEEEEEe---EEEecC----CCe
Q 000177 1645 HAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD--HGGGGFHPAGNEVIINS---EVWDLR----KFR 1708 (1922)
Q Consensus 1645 h~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~VsVaFSPdG~~LASGS---eIWDLr----Tgk 1708 (1922)
|..++ ++|+-+|.|+++.. ++||+|.-+...+|..... ..++.|.+.|.+|++++ .||-.. ++.
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 77666 99999999999776 9999999888888865543 33999999999999988 366655 677
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
.+..+..|.. +.+.|.....++++++
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred eeehhhhcccccceeeecccceEEeecc
Confidence 8888887774 8999999999999874
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=205.86 Aligned_cols=218 Identities=17% Similarity=0.266 Sum_probs=179.1
Q ss_pred eeecCceeeEE-ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1493 FVYSRFRPWRT-CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1493 fi~srfrpirt-LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
|.......+.+ |.||. +.|++++|..-+.+|++|+.|.+++|||+.+|++..++.+|.+.|.++ .. ...++++|
T Consensus 233 ~~~~~~~~i~~~l~GH~-g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~--~~--~~~~~~sg 307 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHF-GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL--TI--DPFLLVSG 307 (537)
T ss_pred eecccceEEEeeccCCC-CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE--Ec--cCceEeec
Confidence 33344556666 99999 999999999878899999999999999999999999999999999999 33 45566664
Q ss_pred -cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.|.+|++|++.+ +.+++.+.+| +++..+ +.++++| +.|++|++||+.+++++.++. +|.
T Consensus 308 s~D~tVkVW~v~n--~~~l~l~~~h~~~V~~v~~~--~~~lvsg---s~d~~v~VW~~~~~~cl~sl~---------gH~ 371 (537)
T KOG0274|consen 308 SRDNTVKVWDVTN--GACLNLLRGHTGPVNCVQLD--EPLLVSG---SYDGTVKVWDPRTGKCLKSLS---------GHT 371 (537)
T ss_pred cCCceEEEEeccC--cceEEEeccccccEEEEEec--CCEEEEE---ecCceEEEEEhhhceeeeeec---------CCc
Confidence 599999999998 8899999876 666666 8899999 889999999999999999997 788
Q ss_pred ceEEEEcCCC-CeEeecc-----EEEEcCCC-cceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1647 YSQIHFSPSD-TMLLWNG-----ILWDRRNS-VPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1647 ~~vVaFSPdG-~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
..+.++..++ ..+++++ ++||+++. ++++++.+|...+ -.....+++|++++ ++||..++++++++.
T Consensus 372 ~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 372 GRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred ceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeec
Confidence 8875555556 8888888 99999999 9999999998877 33345578899888 699999999999999
Q ss_pred CCC-c--eeEEEccCCCEEEEEE
Q 000177 1715 SLD-Q--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1715 gH~-~--~sVaFSPdG~~LaSgs 1734 (1922)
++. . ..+.+. ...+++++
T Consensus 451 ~~~~~~v~~l~~~--~~~il~s~ 471 (537)
T KOG0274|consen 451 GRHVGGVSALALG--KEEILCSS 471 (537)
T ss_pred cCCcccEEEeecC--cceEEEEe
Confidence 843 3 344443 34555553
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-17 Score=187.83 Aligned_cols=224 Identities=17% Similarity=0.325 Sum_probs=183.1
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCCce----eeeccCCCCeeEEEeeecCCCcE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSS---HIAVGSHTKELKIFDSNSSSPL----ESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~---lLASGS~DGtIkIWDl~tgk~l----~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
-..++.+.++.||. ++|..++|.-... .++++|.|.++++|.++.+... ....||...|-+| +..++|..
T Consensus 131 d~~Gk~~~~~~Ght-~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV--sv~~sgtr 207 (423)
T KOG0313|consen 131 DLKGKSIKTIVGHT-GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV--SVDSSGTR 207 (423)
T ss_pred ecCCceEEEEecCC-cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE--EecCCCCe
Confidence 44778889999999 9999888865333 5999999999999999877543 3346999999999 88899999
Q ss_pred EEEec-CCcEEEeccCC-----------------------CCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeE
Q 000177 1568 LLSSS-SQDVHLWNASS-----------------------IAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGI 1619 (1922)
Q Consensus 1568 LaSSs-DgtVkLWDl~t-----------------------~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtI 1619 (1922)
+++++ |.+|+||+... ....++.++.|| .++.|++ ...++++ +.|++|
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~---SwDHTI 283 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV---SWDHTI 283 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEee---cccceE
Confidence 98865 99999999322 012345566676 5688988 6678888 899999
Q ss_pred EEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCc---ceeeeccCCCce-EEEEec
Q 000177 1620 LLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSV---PVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1620 rIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk---~I~kf~gh~~~V-sVaFSP 1690 (1922)
+.||+.+++++.++. .+...+++.++|..++|++++ ++||.|++. +.++|.+|.++| ++.|+|
T Consensus 284 k~WDletg~~~~~~~--------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 284 KVWDLETGGLKSTLT--------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred EEEEeecccceeeee--------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 999999999998886 456777899999999999988 999999864 568899999999 999999
Q ss_pred CCCE-EEEEe-----EEEecCCCe-EEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1691 AGNE-VIINS-----EVWDLRKFR-LLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1691 dG~~-LASGS-----eIWDLrTgk-lL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
...+ |++++ ++||+|+.+ ++..+.+|.. -++.|+. |..|++|.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGG 407 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGG 407 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEecc
Confidence 7764 56666 699999987 9999999977 6888886 45777774
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=187.35 Aligned_cols=309 Identities=14% Similarity=0.170 Sum_probs=226.9
Q ss_pred CCccccccceeeecCceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeee
Q 000177 1483 GVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1483 g~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~af 1561 (1922)
|.+..++.+.|.+..+..+..+.||. ..|++|.|-|. .-+++|||.|++|.+|+-...+...++..|...|+++ .|
T Consensus 122 GEGrerfg~~F~~DSG~SvGei~GhS-r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~V--Ry 198 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSVGEITGHS-RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCV--RY 198 (603)
T ss_pred ecCccceeEEEEecCCCccceeeccc-eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeE--EE
Confidence 34444677888899999999999999 99999999994 4489999999999999988888888999999999999 89
Q ss_pred cCCCcEEEE-ecCCcEEEeccCCCCCCcceEec---cc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1562 SGETQLLLS-SSSQDVHLWNASSIAGGPMHSFE---GC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1562 SpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~---gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
+|||.++++ |+|++|.+||-.+ ++.+..|. +| ..+.|+||++.|+++ +.|++++|||+.+.+++.++
T Consensus 199 sPDG~~Fat~gsDgki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~---SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPDSTQFLTV---SADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCCCceEEEe---cCCceEEEEEeeccceEEEe
Confidence 999999999 7899999999998 77788887 33 789999999999999 99999999999999999998
Q ss_pred ccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
.-... ...+.--+-|. ...|++.+ .+++...+.+++.+.+|+..| ++..+|++++|++|+ .-|
T Consensus 274 ~~~~~----v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 274 PMGST----VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ecCCc----hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 61111 01111114555 33444333 789999899999999999999 999999999999999 379
Q ss_pred ecCCCeEEEEE-cCCCc--eeEEEccCCCEEEEEEccCchhhhh---hh-cccccccCCcc-eEEEEec-----------
Q 000177 1703 DLRKFRLLRSV-PSLDQ--TTITFNARGDVIYAILRRNLEDVMS---AV-HTRRVKHPLFA-AFRTVDA----------- 1763 (1922)
Q Consensus 1703 DLrTgklL~tl-~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s---~l-h~rr~ksp~~s-sFrt~Da----------- 1763 (1922)
+..++..-+-. .+|.. .+++-+..+.++..++.+....+-- .. ....++-...+ .+.+...
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 99888765444 45655 6777777777777775332111100 00 00001111111 1111111
Q ss_pred ----CCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1764 ----INYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1764 ----~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+...+.+++.......++++|++..+||-. .|..+++|.+.
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG------~Dgkvhvysl~ 473 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG------QDGKVHVYSLS 473 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCCCCEEEEec------ccceEEEEEec
Confidence 1223334444556678889999999988753 34679999874
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=199.23 Aligned_cols=199 Identities=12% Similarity=0.184 Sum_probs=152.3
Q ss_pred EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCCCCC------CcceEeccc--
Q 000177 1526 VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASSIAG------GPMHSFEGC-- 1595 (1922)
Q Consensus 1526 SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t~~g------k~l~tf~gh-- 1595 (1922)
.|+.++.|++|+......+..+.+|..+|+++ .|+|+ +.+|+++ .|++|+|||+.+... .++..+.+|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~l--afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDL--QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEE--EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 37788999999998888888999999999999 78986 6788885 599999999975211 133455554
Q ss_pred --eeEEEcCCCCEE-EEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEE
Q 000177 1596 --KAARFSNSGNLF-AALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWD 1667 (1922)
Q Consensus 1596 --~sVaFSPDG~~L-aSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWD 1667 (1922)
.+++|+|++..+ +++ +.|++|+|||+++++.+..+. +...+..++|+|+|.+|++++ +|||
T Consensus 127 ~V~sVaf~P~g~~iLaSg---S~DgtIrIWDl~tg~~~~~i~--------~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSS---GFDSFVNIWDIENEKRAFQIN--------MPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred cEEEEEECCCCCeEEEEE---eCCCeEEEEECCCCcEEEEEe--------cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 789999998765 577 789999999999998776664 234456699999999999765 9999
Q ss_pred cCCCcceeeeccCCCce--E----EEEecCCCEEEEEe---------EEEecCC-CeEEEEEcCCCc-e---eEEEccCC
Q 000177 1668 RRNSVPVHRFDQFTDHG--G----GGFHPAGNEVIINS---------EVWDLRK-FRLLRSVPSLDQ-T---TITFNARG 1727 (1922)
Q Consensus 1668 lrtgk~I~kf~gh~~~V--s----VaFSPdG~~LASGS---------eIWDLrT-gklL~tl~gH~~-~---sVaFSPdG 1727 (1922)
+++++.+.++.+|.+.+ . ..|++++.+|++++ +|||+++ .+++.++..+.. . .....++|
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999999999998764 2 23568999998866 4999995 667766653332 2 22334558
Q ss_pred CEEEEEEccC
Q 000177 1728 DVIYAILRRN 1737 (1922)
Q Consensus 1728 ~~LaSgs~~d 1737 (1922)
.++++|..+.
T Consensus 276 ~l~lsGkGD~ 285 (568)
T PTZ00420 276 LIYLIGKGDG 285 (568)
T ss_pred CEEEEEECCC
Confidence 8888875444
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-18 Score=211.91 Aligned_cols=217 Identities=19% Similarity=0.399 Sum_probs=192.9
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
+.+..|. ..|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|..+|.+| .|+.+..+|++|. +|+|++||
T Consensus 22 ~~~~~hs-aav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl--~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHS-AAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL--TFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhh-hhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee--ecCcchhhhcccccCCceeeee
Confidence 4455788 889999987788999999999999999998888888999999999999 8899999998865 99999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ceEEEEcC
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YSQIHFSP 1654 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~vVaFSP 1654 (1922)
+.. .+.++++.+| .++.|+|-+.+++.| +.|..+++||++...|.+++. +|. ..++.|+|
T Consensus 99 lee--Ak~vrtLtgh~~~~~sv~f~P~~~~~a~g---Stdtd~~iwD~Rk~Gc~~~~~---------s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 99 LEE--AKIVRTLTGHLLNITSVDFHPYGEFFASG---STDTDLKIWDIRKKGCSHTYK---------SHTRVVDVLRLSP 164 (825)
T ss_pred hhh--hhhhhhhhccccCcceeeeccceEEeccc---cccccceehhhhccCceeeec---------CCcceeEEEeecC
Confidence 998 7888888886 679999999999888 889999999999888988886 454 44599999
Q ss_pred CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeE
Q 000177 1655 SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTI 1721 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sV 1721 (1922)
+|+++++++ +|||+..|+.++.|..|...+ ++.|||..-.+++|+ ++||+++++++........ .++
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~ 244 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSL 244 (825)
T ss_pred CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceee
Confidence 999999988 999999999999999999888 999999999999999 5999999999887764433 799
Q ss_pred EEccCCCEEEEEEc
Q 000177 1722 TFNARGDVIYAILR 1735 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~ 1735 (1922)
+|+|+|..++++..
T Consensus 245 ~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 245 AFNPDGKIVLSGEQ 258 (825)
T ss_pred eecCCceeeecCch
Confidence 99999999999854
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=178.73 Aligned_cols=230 Identities=13% Similarity=0.163 Sum_probs=187.5
Q ss_pred ccceeeecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1489 RDRQFVYSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1489 ~dr~fi~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
.++.....++..--..++|. +.|-.++|+| ....+++++.|.+|++||+..+++...+....+.|+. .|+|+|.+
T Consensus 45 ~v~n~e~~r~~~~~~~~gh~-~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i---~wsp~g~~ 120 (313)
T KOG1407|consen 45 SVWNLERDRFRKELVYRGHT-DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINI---TWSPDGEY 120 (313)
T ss_pred EEEEecchhhhhhhcccCCC-cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEE---EEcCCCCE
Confidence 33333333555555678999 8999999998 6679999999999999999999999888655555554 58999999
Q ss_pred EEEec-CCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1568 LLSSS-SQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1568 LaSSs-DgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
++.+. |..|...|.++ .+.+...+ ..+-+.|+.++++|+.. ..-|+|.|.....-+.+++++
T Consensus 121 ~~~~~kdD~it~id~r~--~~~~~~~~~~~e~ne~~w~~~nd~Fflt---~GlG~v~ILsypsLkpv~si~--------- 186 (313)
T KOG1407|consen 121 IAVGNKDDRITFIDART--YKIVNEEQFKFEVNEISWNNSNDLFFLT---NGLGCVEILSYPSLKPVQSIK--------- 186 (313)
T ss_pred EEEecCcccEEEEEecc--cceeehhcccceeeeeeecCCCCEEEEe---cCCceEEEEeccccccccccc---------
Confidence 98865 88999999987 55554433 24778899888877776 566899999888888888776
Q ss_pred CCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE-----EEecCCCeEE
Q 000177 1644 GHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VWDLRKFRLL 1710 (1922)
Q Consensus 1644 gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IWDLrTgklL 1710 (1922)
.|+.++ +.|+|+|+++++++ .|||+..--+++.|..+.-+| .+.|+.+|++||++|+ |=++.||..+
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 677776 88999999999999 899999988999999999889 9999999999999994 6677899999
Q ss_pred EEEcCCCc-eeEEEccCCCEEEEEEcc
Q 000177 1711 RSVPSLDQ-TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1711 ~tl~gH~~-~sVaFSPdG~~LaSgs~~ 1736 (1922)
..++.... ..|+|+|....|+-+..+
T Consensus 267 ~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 267 WEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEeeccCCceeEEecCCCceeeEEecC
Confidence 99885444 799999999888876543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=182.80 Aligned_cols=270 Identities=16% Similarity=0.202 Sum_probs=198.8
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDgtVkLWDl~t 1583 (1922)
-|. +.|.++... +++|+||++||+++|||. .|++..++.||+++|.++.|....+ ...+++ |.|.++++|-++.
T Consensus 103 ~hd-DWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHD-DWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cch-hhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 377 899999887 789999999999999997 7999999999999999886633222 223444 6799999999986
Q ss_pred CCCC--cceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec-----------------cccccc
Q 000177 1584 IAGG--PMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS-----------------DTSVNL 1640 (1922)
Q Consensus 1584 ~~gk--~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~-----------------d~s~~~ 1640 (1922)
+... .+..-.|| -++...++|.+|++| +.|.+|+||+..+. ....+. ......
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg---S~D~~lkiWs~~~~-~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG---SWDTMLKIWSVETD-EEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEee---cccceeeecccCCC-ccccccccchhhhhhhhhhhcccccCceE
Confidence 3221 12222355 678889999999999 99999999993211 000000 001111
Q ss_pred cCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1641 TGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1641 ~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
...||..++ +.|++ ...+.+++ +.||+.+++.+.++.+.....++.++|..+.|++|+ ++||.+++.
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence 224777766 88988 66677777 999999999998887776666999999999999999 699999853
Q ss_pred ---EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc-eeeeecc-CCceEEE
Q 000177 1709 ---LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS-DIATIPV-DRCVLDF 1781 (1922)
Q Consensus 1709 ---lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys-~IaTidv-kr~I~dL 1781 (1922)
..+++.+|.+ ..+.|||...+++.... ++...++||...-+ ++.++.. ..+|+++
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S------------------~D~t~klWDvRS~k~plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS------------------YDNTVKLWDVRSTKAPLYDIAGHNDKVLSV 395 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEe------------------cCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence 4577889998 69999999888775521 44566777766655 7777765 4568999
Q ss_pred EEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1782 ATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1782 a~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
.|+..+-. + ++..|..+++++
T Consensus 396 dW~~~~~I-v------SGGaD~~l~i~~ 416 (423)
T KOG0313|consen 396 DWNEGGLI-V------SGGADNKLRIFK 416 (423)
T ss_pred eccCCceE-E------eccCcceEEEec
Confidence 98865432 2 355668888885
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=177.07 Aligned_cols=259 Identities=12% Similarity=0.200 Sum_probs=181.2
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeec--cCCCCeeEEEeeecCCCcEEEE-ec-CC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCT--SHQAPVTLVQSHLSGETQLLLS-SS-SQ 1574 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~--gHss~VtsLq~afSpDG~lLaS-Ss-Dg 1574 (1922)
..+|++|. +.|++++|+.||++|+|++.|++|+||++...... +.+. -.-+--+.+ .|+||-+-++. .. ..
T Consensus 79 ~~~LKgH~-~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V--~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 79 VSVLKGHK-KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV--VFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhccC-CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEE--EECCCcceEEEEEccCC
Confidence 45688999 99999999999999999999999999999764221 1110 011223566 78998765554 43 66
Q ss_pred cEEEeccCCC-CCCcceEec--------c-c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc
Q 000177 1575 DVHLWNASSI-AGGPMHSFE--------G-C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1575 tVkLWDl~t~-~gk~l~tf~--------g-h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~ 1640 (1922)
++++|.+... .|...+.+. . | -.+-...++++|+++ +.|.+|.+||++ |+.+.++...
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa---s~dt~i~lw~lk-Gq~L~~idtn---- 227 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA---SLDTKICLWDLK-GQLLQSIDTN---- 227 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe---cCCCcEEEEecC-Cceeeeeccc----
Confidence 7999987541 122222111 1 1 234445567899999 889999999999 8888887511
Q ss_pred cCCCCcceEEEEcCCCCeEeecc-----EEEEcCC---C-----cceeeeccCCCce-EEEEecCCCEEEEEe-----EE
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN---S-----VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EV 1701 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt---g-----k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eI 1701 (1922)
.-....++.||+|+++++++ ++|.+-- | +.+..+.||...+ ..+|+|+...+++.| +|
T Consensus 228 ---q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 228 ---QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred ---cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence 11122389999999999988 8998753 2 2356678999988 999999999999999 59
Q ss_pred EecCC-------CeEEEEEc--CC----CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce
Q 000177 1702 WDLRK-------FRLLRSVP--SL----DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD 1768 (1922)
Q Consensus 1702 WDLrT-------gklL~tl~--gH----~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~ 1768 (1922)
||+.- -+.+++.+ -| ....+..+|+|+.++.+. .+.++.+.+.+...
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--------------------gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--------------------GSDLKVFASEDGKD 364 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--------------------CCceEEEEcccCcc
Confidence 99752 22333332 12 126899999999999883 34455555544443
Q ss_pred eeeecc--CCceEEEEEcCCCceEEEE
Q 000177 1769 IATIPV--DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1769 IaTidv--kr~I~dLa~SPdds~LAVV 1793 (1922)
..+.+. ...|..++|+++|++++.+
T Consensus 365 ~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 365 YPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred chhHHHhhcCceeeEEecCCCcEEeee
Confidence 333322 4569999999999999977
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=186.49 Aligned_cols=223 Identities=17% Similarity=0.268 Sum_probs=179.3
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEecCC-c
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSSSSQ-D 1575 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSSsDg-t 1575 (1922)
..+++|-+|. +.|+++.|+|....|++|+.|++||+||+.+....+.+ -....+|.+| +|+|.|.+|+.|.|. +
T Consensus 163 PvIRTlYDH~-devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsi--SfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 163 PVIRTLYDHV-DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSI--SFHPSGEFLLVGTDHPT 239 (430)
T ss_pred ceEeehhhcc-CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeE--eecCCCceEEEecCCCc
Confidence 3578999999 99999999999999999999999999999765433322 2346789999 999999999998765 7
Q ss_pred EEEeccCCCCCCcceEe-------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1576 VHLWNASSIAGGPMHSF-------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf-------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++|||+++ .+|...- .+++++.+++.+++.+++ +.||.|+|||--+++|+.++.. ...+..+.
T Consensus 240 ~rlYdv~T--~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa---SkDG~IklwDGVS~rCv~t~~~-----AH~gsevc 309 (430)
T KOG0640|consen 240 LRLYDVNT--YQCFVSANPDDQHTGAITQVRYSSTGSLYVTA---SKDGAIKLWDGVSNRCVRTIGN-----AHGGSEVC 309 (430)
T ss_pred eeEEeccc--eeEeeecCcccccccceeEEEecCCccEEEEe---ccCCcEEeeccccHHHHHHHHh-----hcCCceee
Confidence 99999998 5543322 125889999999999999 9999999999999999999861 01122344
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC--ce----EEEEecCCCEEEEEeE------EEecCCCeEEE
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD--HG----GGGFHPAGNEVIINSE------VWDLRKFRLLR 1711 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~V----sVaFSPdG~~LASGSe------IWDLrTgklL~ 1711 (1922)
.+.|..+|+++++.| ++|.+.+++++..|.|... .. ...|+.+..|++.-.+ -||-++...+.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 488999999999998 9999999999999976521 11 5678888888876653 79999987666
Q ss_pred EEc-CCCc--eeEEEccCCCEEEEEE
Q 000177 1712 SVP-SLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1712 tl~-gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
-+. +|.. ..+.-||.+..+++++
T Consensus 390 l~slgHn~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 390 LLSLGHNGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred hcccCCCCCceEEEeCCCCCceeeec
Confidence 555 6666 7889999999999885
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=191.76 Aligned_cols=257 Identities=16% Similarity=0.212 Sum_probs=203.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceE
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~t 1591 (1922)
+-+.|+ ..+.|++|.. ..|.+|+..++........+...|+++ .|+++|.+|+.| .+|.|.|||... .+.+..
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv--~ws~~G~~LavG~~~g~v~iwD~~~--~k~~~~ 254 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSV--KWSPDGSHLAVGTSDGTVQIWDVKE--QKKTRT 254 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEE--EECCCCCEEEEeecCCeEEEEehhh--cccccc
Confidence 456788 4456666654 469999999998766666668999999 889999999997 599999999987 666777
Q ss_pred ecc-c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc-
Q 000177 1592 FEG-C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG- 1663 (1922)
Q Consensus 1592 f~g-h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg- 1663 (1922)
+.+ | -+++|. +..+.+| +.|+.|.+||++..+..... ..+|...+ +.|++++.+++++|
T Consensus 255 ~~~~h~~rvg~laW~--~~~lssG---sr~~~I~~~dvR~~~~~~~~--------~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN--SSVLSSG---SRDGKILNHDVRISQHVVST--------LQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred ccCCcCceeEEEecc--CceEEEe---cCCCcEEEEEEecchhhhhh--------hhcccceeeeeEECCCCCeeccCCC
Confidence 766 4 567887 6677777 89999999999987765541 12455444 99999999999999
Q ss_pred ----EEEEcCCCcceeeeccCCCce-EEEEecC-CCEEEEEe-------EEEecCCCeEEEEEcCCCc-eeEEEccCCCE
Q 000177 1664 ----ILWDRRNSVPVHRFDQFTDHG-GGGFHPA-GNEVIINS-------EVWDLRKFRLLRSVPSLDQ-TTITFNARGDV 1729 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~kf~gh~~~V-sVaFSPd-G~~LASGS-------eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~ 1729 (1922)
.|||.....++.+|..|...| .++|+|- ...||+|+ ++||..+++.+..+....+ +++.|++..+-
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKE 401 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCE
Confidence 899998889999999999999 9999995 56888888 5999999999998875555 99999999988
Q ss_pred EEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1730 IYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1730 LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
|+++.... ...+.+|.-.+++.+..+.. ..+|..++++|++..+++.. .|.++|+|
T Consensus 402 i~sthG~s-----------------~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a------~DETlrfw 458 (484)
T KOG0305|consen 402 LLSTHGYS-----------------ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA------ADETLRFW 458 (484)
T ss_pred EEEecCCC-----------------CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec------ccCcEEec
Confidence 88874321 12355666666677776655 34599999999999999774 34578888
Q ss_pred Eec
Q 000177 1809 EIG 1811 (1922)
Q Consensus 1809 EVG 1811 (1922)
.+-
T Consensus 459 ~~f 461 (484)
T KOG0305|consen 459 NLF 461 (484)
T ss_pred ccc
Confidence 763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=179.23 Aligned_cols=222 Identities=15% Similarity=0.231 Sum_probs=179.1
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC---cEEEEecC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET---QLLLSSSS 1573 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG---~lLaSSsD 1573 (1922)
++.|+..+..|. +.|++++.+ +.++|+||.|-+|+|||+.+...+..+..|.+.|+++ .|.++- .+|.++.|
T Consensus 32 ~l~~lF~~~aH~-~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL--~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 32 TLKPLFAFSAHA-GSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITAL--KFYPPLSKSHLLSGSDD 106 (362)
T ss_pred eeeccccccccc-cceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEE--EecCCcchhheeeecCC
Confidence 456778889999 999999997 8999999999999999999999999999999999999 666665 44444679
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
|.|.+|+... ..++.++++| +.++.||.++.-++. +.|+.+++||+-+|+.-..++ ..+....
T Consensus 107 G~i~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS~KLALsV---g~D~~lr~WNLV~Gr~a~v~~--------L~~~at~ 173 (362)
T KOG0294|consen 107 GHIIIWRVGS--WELLKSLKAHKGQVTDLSIHPSGKLALSV---GGDQVLRTWNLVRGRVAFVLN--------LKNKATL 173 (362)
T ss_pred CcEEEEEcCC--eEEeeeecccccccceeEecCCCceEEEE---cCCceeeeehhhcCccceeec--------cCCccee
Confidence 9999999988 8888999876 789999999999998 889999999999988766654 3455556
Q ss_pred EEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1650 IHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
+.|+|.|.+++..+ -+|.+.+.+....+.......++.|-. +.++++|. .+||..+..++..+.+|..
T Consensus 174 v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RV 252 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRV 252 (362)
T ss_pred eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchhhe
Confidence 99999999777666 688887766655554443333666654 55666666 4999999999999999988
Q ss_pred eeEE--EccCCCEEEEEEccC
Q 000177 1719 TTIT--FNARGDVIYAILRRN 1737 (1922)
Q Consensus 1719 ~sVa--FSPdG~~LaSgs~~d 1737 (1922)
..+. -+|.+.+|++++.+.
T Consensus 253 K~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 253 KDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred eeeEEEecCCceEEEEeccCc
Confidence 3443 477889999986433
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-16 Score=170.00 Aligned_cols=221 Identities=18% Similarity=0.273 Sum_probs=168.7
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-----eeeeccCCCCeeEEEee--ecCCCcEEEEec--CCc
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-----LESCTSHQAPVTLVQSH--LSGETQLLLSSS--SQD 1575 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-----l~tL~gHss~VtsLq~a--fSpDG~lLaSSs--Dgt 1575 (1922)
+.|. +.|+|.+|||+|++|+|||.|++|++.-.+...+ ...|.-|.+.|..++|- ....+.+|+++. |..
T Consensus 86 khhk-gsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 86 KHHK-GSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred cccC-ccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 3577 9999999999999999999999999976543322 24678899999999541 122467888854 777
Q ss_pred EEEeccCCCCCCcceEecccee---EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC-CCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGCKA---ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG-RGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh~s---VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~-~gh~~~vVa 1651 (1922)
|.+-|... ++..+.+.+|+. .-++-+|-+|++| +.|++|++||++-..++.++.. .....+ ....+..++
T Consensus 165 iy~tdc~~--g~~~~a~sghtghilalyswn~~m~~sg---sqdktirfwdlrv~~~v~~l~~-~~~~~glessavaav~ 238 (350)
T KOG0641|consen 165 IYITDCGR--GQGFHALSGHTGHILALYSWNGAMFASG---SQDKTIRFWDLRVNSCVNTLDN-DFHDGGLESSAVAAVA 238 (350)
T ss_pred EEEeecCC--CCcceeecCCcccEEEEEEecCcEEEcc---CCCceEEEEeeeccceeeeccC-cccCCCcccceeEEEE
Confidence 77777776 888999988732 3355678999998 9999999999999999988751 111111 112334499
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeE-----EEEEcC
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRL-----LRSVPS 1715 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgkl-----L~tl~g 1715 (1922)
..|.|++|+++- .+||++-+++|+.|..|...| ++.|+|.-.|+++++ ++-|++ |.+ +..+..
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~e 317 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAE 317 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEe
Confidence 999999999876 899999999999999999999 999999999999999 466665 322 334445
Q ss_pred CCc--eeEEEccCCCEEEEE
Q 000177 1716 LDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSg 1733 (1922)
|.. -.+.|+|+.-.+++.
T Consensus 318 hkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred ccCceEEEEecCccceeeec
Confidence 554 578899987666655
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=175.90 Aligned_cols=227 Identities=20% Similarity=0.283 Sum_probs=181.8
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH--TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~--DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
...+.+..+++..+. -+|..++|....+.++.++. |.+|+..++.+.+.++.|.||...|++| +.+|-+..++++
T Consensus 42 d~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL--~~sP~~d~FlS~ 118 (311)
T KOG1446|consen 42 DSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSL--SVSPKDDTFLSS 118 (311)
T ss_pred EcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEE--EecCCCCeEEec
Confidence 344667778887777 78999999998888888887 8999999999999999999999999999 788887777775
Q ss_pred -cCCcEEEeccCCCCCCcceE--eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC--ceeeeeccccccccCCCCc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHS--FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTY--QLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~t--f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg--k~i~tL~d~s~~~~~~gh~ 1646 (1922)
-|++|++||++. .++... +.+-..++|.|+|-+|+++ .....|++||++.. .+..++.-. . ..+.
T Consensus 119 S~D~tvrLWDlR~--~~cqg~l~~~~~pi~AfDp~GLifA~~---~~~~~IkLyD~Rs~dkgPF~tf~i~----~-~~~~ 188 (311)
T KOG1446|consen 119 SLDKTVRLWDLRV--KKCQGLLNLSGRPIAAFDPEGLIFALA---NGSELIKLYDLRSFDKGPFTTFSIT----D-NDEA 188 (311)
T ss_pred ccCCeEEeeEecC--CCCceEEecCCCcceeECCCCcEEEEe---cCCCeEEEEEecccCCCCceeEccC----C-CCcc
Confidence 599999999997 455433 3445778999999999998 44459999999964 334444300 0 1122
Q ss_pred c-eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce----EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1647 Y-SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG----GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1647 ~-~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V----sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
. ..+.|||+|++++.+. ++.|.-+|..+.+|.++.+.. ..+|+|+|++|++|+ .+|++++++.+.
T Consensus 189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 2 3399999999888443 889999999999998876543 899999999999999 399999999999
Q ss_pred EEcCC-Cc--eeEEEccCCCEEEEE
Q 000177 1712 SVPSL-DQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1712 tl~gH-~~--~sVaFSPdG~~LaSg 1733 (1922)
.+.+. .. .++.|||.-.+++++
T Consensus 269 ~~~~~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred EecCCCCCCccccccCCceeeeeec
Confidence 99874 33 799999988777776
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=195.08 Aligned_cols=218 Identities=23% Similarity=0.317 Sum_probs=176.4
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCCCC------ceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCC
Q 000177 1514 CITFL-GDSSHIAVGSHTKELKIFDSNSSS------PLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1514 ~LaFS-PDG~lLASGS~DGtIkIWDl~tgk------~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~ 1585 (1922)
.+..+ |.+++|+|||.||.|++|++..-. .+.++..|...|+.+ ....+++.|++ |+|.+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDi--iL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDI--ILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhH--HhhcCCCceEEecCCceEEEeecccCc
Confidence 44555 367789999999999999985322 366788999999999 77788877777 679999999998732
Q ss_pred CCcceEeccc----eeEEE-cCCCCEEEEeecCCCCCeEEEEECCCC--ceeeeeccccccccCCCCcceE--EEEcCCC
Q 000177 1586 GGPMHSFEGC----KAARF-SNSGNLFAALPTETSDRGILLYDIQTY--QLEAKLSDTSVNLTGRGHAYSQ--IHFSPSD 1656 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaF-SPDG~~LaSgS~~S~DgtIrIWDlrTg--k~i~tL~d~s~~~~~~gh~~~v--VaFSPdG 1656 (1922)
.-|+.++..| .|+++ -++...+++| +-|+.|.+||+.++ +.+.++.....+....|+...+ ++.+++|
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSg---GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASG---GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEec---CCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 2456666655 78888 7788888888 89999999999988 4455554222222222454444 8888999
Q ss_pred CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEE
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITF 1723 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaF 1723 (1922)
..|+++| ++||.++++.+.++.||...| .+..+++|..++++| ++||+...+++.++..|.. |.+..
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 8999988 999999999999999999999 899999999999999 7999999999999998877 89999
Q ss_pred ccCCCEEEEEEcc
Q 000177 1724 NARGDVIYAILRR 1736 (1922)
Q Consensus 1724 SPdG~~LaSgs~~ 1736 (1922)
+|+=.++|+|.++
T Consensus 264 ~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 264 SPSFTHVYSGGRD 276 (735)
T ss_pred CCCcceEEecCCC
Confidence 9999999998543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=188.10 Aligned_cols=229 Identities=16% Similarity=0.267 Sum_probs=171.5
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce------------eeeccCCCCeeEEEeeecCCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL------------ESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l------------~tL~gHss~VtsLq~afSpDG 1565 (1922)
|+.+.-...|. |++++|++.|..|++.+....++|+|-+..... ..-+||...++|. +|+|+.
T Consensus 206 fr~l~P~E~h~---i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g--~whP~~ 280 (641)
T KOG0772|consen 206 FRQLQPCETHQ---INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCG--CWHPDN 280 (641)
T ss_pred hhccCcccccc---cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecc--ccccCc
Confidence 56566555676 999999999999998888899999996543322 2237899999999 667764
Q ss_pred --cEEEEecCCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1566 --QLLLSSSSQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1566 --~lLaSSsDgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.+|.++.|++++|||+... .+.+..|+. .+.|+|+|+|+.|++| ..||.|.+||......-..+.
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag---c~DGSIQ~W~~~~~~v~p~~~ 356 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNT-KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG---CLDGSIQIWDKGSRTVRPVMK 356 (641)
T ss_pred ccceEEecCCCcEEEEecCCc-hhheeEEeeccCCCcccCceeeecCCCcchhhhc---ccCCceeeeecCCcccccceE
Confidence 4666678999999999862 233344432 3789999999999998 889999999986432211111
Q ss_pred cccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC-cceeeeccCCCce---EEEEecCCCEEEEEe------
Q 000177 1635 DTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG---GGGFHPAGNEVIINS------ 1699 (1922)
Q Consensus 1635 d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V---sVaFSPdG~~LASGS------ 1699 (1922)
-.... ..+..+.+++||++|++|++-| ++||+++. ++++.+.+..... .++|||+.+.|++|+
T Consensus 357 vk~AH--~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 357 VKDAH--LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred eeecc--CCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence 00000 0133556799999999999888 99999975 5888887776554 899999999999998
Q ss_pred -----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 -----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 -----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
-+||..++..+.++.-... ..+.|||.=+.|++++.+.
T Consensus 435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred CCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 1889999999988874444 5789999888888775544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=197.95 Aligned_cols=201 Identities=20% Similarity=0.330 Sum_probs=160.4
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC-CCcEEEEec-CCc
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG-ETQLLLSSS-SQD 1575 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp-DG~lLaSSs-Dgt 1575 (1922)
-+|++.|+||. +.|..+.||.+ ++|++.|.|.|||+|++...+|+.+|. |...|+|| .|+| |.+|+++|+ |+.
T Consensus 359 ekP~~ef~GHt-~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV--aFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHT-ADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV--AFNPVDDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccc-hhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE--EecccCCCcEeecccccc
Confidence 36778899999 99999999975 589999999999999999999999997 99999999 7777 678888876 999
Q ss_pred EEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc-cCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL-TGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~-~~~gh~~~vVa 1651 (1922)
|+||++.. .+.+.... -+++++|.|+|+..+.| +.+|.+++|++..-+....+.-..... ...++.+.-+.
T Consensus 434 vRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~avIG---t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 434 VRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAVIG---TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred eEEeecCc--CeeEeehhhhhhheeEEeccCCceEEEE---EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence 99999986 33333222 25999999999999999 888999999999877766654111111 11233445588
Q ss_pred EcCCCC--eEeecc----EEEEcCCCcceeeeccCCCc---eEEEEecCCCEEEEEeE-----EEecCCCe
Q 000177 1652 FSPSDT--MLLWNG----ILWDRRNSVPVHRFDQFTDH---GGGGFHPAGNEVIINSE-----VWDLRKFR 1708 (1922)
Q Consensus 1652 FSPdG~--lLaSgg----rLWDlrtgk~I~kf~gh~~~---VsVaFSPdG~~LASGSe-----IWDLrTgk 1708 (1922)
|.|... +|+|.. +|||.++..++++|+|+.+. +...|+.||++|+++++ ||++....
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 887654 666555 99999999999999988654 38899999999999994 99985443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-16 Score=173.12 Aligned_cols=210 Identities=20% Similarity=0.296 Sum_probs=161.9
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCCceeeeccCCCCeeEEEeeecCC-Cc-EEEEecCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSN-SSSPLESCTSHQAPVTLVQSHLSGE-TQ-LLLSSSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~-tgk~l~tL~gHss~VtsLq~afSpD-G~-lLaSSsDgtVkLWDl~t~~ 1585 (1922)
+.+..++|++ ..+.+++++.||+++|||+. ..+++..++.|...|.++ .|++. ++ +|.+|.|++||||+...
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Sv--dwn~~~r~~~ltsSWD~TiKLW~~~r-- 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSV--DWNTVRRRIFLTSSWDGTIKLWDPNR-- 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEe--ccccccceeEEeeccCCceEeecCCC--
Confidence 7899999998 45689999999999999964 346788999999999999 55553 33 44446699999999987
Q ss_pred CCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe-E
Q 000177 1586 GGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM-L 1659 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l-L 1659 (1922)
.+.+++|.+| ....|+| .++.|+++ +.|+++++||++.......++ .+.....++.|+.-+.. +
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~---Sgd~~l~lwdvr~~gk~~~i~-------ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASA---SGDGTLRLWDVRSPGKFMSIE-------AHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEc---cCCceEEEEEecCCCceeEEE-------eccceeEeecccccCCcEE
Confidence 7789999997 4578999 57899998 899999999998644333354 12233445788886654 5
Q ss_pred eecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCC-CEEEEEe-----EEEecCCC-eEEEEEcCCCc--eeEEE
Q 000177 1660 LWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAG-NEVIINS-----EVWDLRKF-RLLRSVPSLDQ--TTITF 1723 (1922)
Q Consensus 1660 aSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG-~~LASGS-----eIWDLrTg-klL~tl~gH~~--~sVaF 1723 (1922)
+|++ +.||+++- .++..+.+|.-.| .+.|||.. ..|++++ +|||.... .++.++.-|.. +.+.|
T Consensus 207 ~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred EecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence 5666 99999975 4888999999888 99999975 5778887 69999854 45666666665 78888
Q ss_pred ccC-CCEEEEE
Q 000177 1724 NAR-GDVIYAI 1733 (1922)
Q Consensus 1724 SPd-G~~LaSg 1733 (1922)
|+. +.++++.
T Consensus 287 s~~~~~~vAs~ 297 (311)
T KOG0277|consen 287 SLFDPGQVAST 297 (311)
T ss_pred ccccCceeeec
Confidence 885 4455554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=181.27 Aligned_cols=269 Identities=17% Similarity=0.245 Sum_probs=199.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CCceeeeccCCCCeeEEEeeecCCCc-EEEEec-CCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNS--SSPLESCTSHQAPVTLVQSHLSGETQ-LLLSSS-SQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--gk~l~tL~gHss~VtsLq~afSpDG~-lLaSSs-DgtVkLWDl~t~~ 1585 (1922)
+.|+++.|+|.-.+|++++.||+++||.++. ...+..+.--..+|.+. .|.|+|+ .+++++ ....+.||+.+..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a--~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKA--EFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCcccee--eecCCCceEEEecccceEEEEeeccccc
Confidence 6899999999999999999999999999863 33455555557899999 8899998 666654 7789999998732
Q ss_pred CCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1586 GGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1586 gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
-..+....+ ......+|++++|+.. +..|.|.+....|+..+.+++ ....+..++|+.+++.|+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~---G~~G~I~lLhakT~eli~s~K--------ieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIA---GNNGHIHLLHAKTKELITSFK--------IEGVVSDFTFSSDSKELL 360 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEc---ccCceEEeehhhhhhhhheee--------eccEEeeEEEecCCcEEE
Confidence 222333333 3567889999999998 888999999999999998886 234444599999998877
Q ss_pred ecc-----EEEEcCCCcceeeeccCCC--ceEEEEecCCCEEEEEe-----EEEecCC------CeEEEEEcCCCc--ee
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFTD--HGGGGFHPAGNEVIINS-----EVWDLRK------FRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~~--~VsVaFSPdG~~LASGS-----eIWDLrT------gklL~tl~gH~~--~s 1720 (1922)
..+ .+||+++..++++|..... ..+++.+++|.|||+|| .|||..+ -++++++..... ++
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 554 8999999999999965433 33889999999999999 3787553 355666654443 79
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQED 1800 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d 1800 (1922)
+.|||++++|+.+++....- -+-+.-|..+.|+.|...+ .+ -..+.+++|+|.+.++|+..
T Consensus 441 l~Fn~d~qiLAiaS~~~kna------lrLVHvPS~TVFsNfP~~n-~~------vg~vtc~aFSP~sG~lAvGN------ 501 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNA------LRLVHVPSCTVFSNFPTSN-TK------VGHVTCMAFSPNSGYLAVGN------ 501 (514)
T ss_pred eeeCcchhhhhhhhhccccc------eEEEeccceeeeccCCCCC-Cc------ccceEEEEecCCCceEEeec------
Confidence 99999999999885433211 1233344444555444331 11 23589999999999999752
Q ss_pred ccceEEEEEe
Q 000177 1801 MFSSARIYEI 1810 (1922)
Q Consensus 1801 ~dSsVRLyEV 1810 (1922)
....+.+|.+
T Consensus 502 e~grv~l~kL 511 (514)
T KOG2055|consen 502 EAGRVHLFKL 511 (514)
T ss_pred CCCceeeEee
Confidence 3367888875
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-16 Score=174.38 Aligned_cols=273 Identities=18% Similarity=0.259 Sum_probs=198.9
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgt 1575 (1922)
.|+.++.|.||. ++||.++-......+.++|.|.+.+||.+++|.|+.+|.||.+.|++| .|++.+.++++ +.|++
T Consensus 137 ~~~lvre~~GHk-DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsi--kfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHK-DGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSI--KFHNSGLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccc-cceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeE--EeccccceEEEccCCcc
Confidence 356677889999 999999988877799999999999999999999999999999999999 89999999999 56999
Q ss_pred EEEeccCCCCCCcc----eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--
Q 000177 1576 VHLWNASSIAGGPM----HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ-- 1649 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l----~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v-- 1649 (1922)
..||...-.-..|. ....+..-+.-+-.......++..+...+|++ ++..|. +|...+
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~lt---------gH~~vV~a 277 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLT---------GHRAVVSA 277 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee-------eeeeee---------ccccceEe
Confidence 99998432000011 01111011111111111122111122223332 223333 565555
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC-CeEEEEEcCCC
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK-FRLLRSVPSLD 1717 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT-gklL~tl~gH~ 1717 (1922)
..|-..|+.+++++ .+||+.+|.+++.+.||.... .++-||+.+.+++.+ ++||++. -+.+..|.||.
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 66888999999988 899999999999999999888 889999999999999 5999984 35577788998
Q ss_pred c--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-CceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1718 Q--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-YSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1718 ~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-ys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
. +++.|+-+.+ +++++. +..+++||-.+ .++++++....+++.++++..+..||+-
T Consensus 358 dtVTS~vF~~dd~-vVSgSD-------------------DrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiP- 416 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR-VVSGSD-------------------DRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIP- 416 (481)
T ss_pred cceeEEEEecCCc-eeecCC-------------------CceEEEeeeccccCcceeeecCCccceeEeecCCceEEec-
Confidence 7 7999998754 455532 23466777554 5679999999999999999999888854
Q ss_pred cCCCCCccceEEEEEecCCC
Q 000177 1795 MDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1795 ~dds~d~dSsVRLyEVGr~r 1814 (1922)
.++ ..||+|++...+
T Consensus 417 ---hDN--RqvRlfDlnG~R 431 (481)
T KOG0300|consen 417 ---HDN--RQVRLFDLNGNR 431 (481)
T ss_pred ---cCC--ceEEEEecCCCc
Confidence 122 679999875544
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=168.92 Aligned_cols=217 Identities=12% Similarity=0.182 Sum_probs=163.0
Q ss_pred ceeeEEec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--CceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1498 FRPWRTCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS--SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1498 frpirtLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg--k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
+....++. +|+ ..|.+|+|+|.|++|++||.|.++.||.-..+ +++.++.||...|.++ +|+++|.+|++|+ |
T Consensus 50 ~~ck~vld~~hk-rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V--aws~sG~~LATCSRD 126 (312)
T KOG0645|consen 50 WTCKTVLDDGHK-RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV--AWSASGNYLATCSRD 126 (312)
T ss_pred EEEEEeccccch-heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE--EEcCCCCEEEEeeCC
Confidence 45555565 499 99999999999999999999999999987644 6788999999999999 8999999999965 9
Q ss_pred CcEEEeccCCC-CCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECC---CCceeeeeccccccccCCCC
Q 000177 1574 QDVHLWNASSI-AGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQ---TYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 gtVkLWDl~t~-~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr---Tgk~i~tL~d~s~~~~~~gh 1645 (1922)
+.|.||.+... ...++..+++| ..+.|||....|+++ +.|++|++|+-. ...+++++. +|
T Consensus 127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~---SYDnTIk~~~~~~dddW~c~~tl~---------g~ 194 (312)
T KOG0645|consen 127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC---SYDNTIKVYRDEDDDDWECVQTLD---------GH 194 (312)
T ss_pred CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe---ccCCeEEEEeecCCCCeeEEEEec---------Cc
Confidence 99999999741 23456667766 679999999999999 999999999876 345777775 55
Q ss_pred --cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCC-----
Q 000177 1646 --AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRK----- 1706 (1922)
Q Consensus 1646 --~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrT----- 1706 (1922)
++.+++|+|.|..+++++ +||-..+. +.+ |...+ .+.|. + ..|++++ +++.-..
T Consensus 195 ~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p 267 (312)
T KOG0645|consen 195 ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEP 267 (312)
T ss_pred cceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCc
Confidence 556699999999999888 89986632 222 33444 57887 3 4566666 3443322
Q ss_pred -CeEEE-EEcCCCc--eeEEEccC-CCEEEEEEcc
Q 000177 1707 -FRLLR-SVPSLDQ--TTITFNAR-GDVIYAILRR 1736 (1922)
Q Consensus 1707 -gklL~-tl~gH~~--~sVaFSPd-G~~LaSgs~~ 1736 (1922)
.+++. .-..|.. ++|.|+|. ...|+++..+
T Consensus 268 ~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 268 SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred hHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence 12222 2224544 99999995 5667776433
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-17 Score=199.08 Aligned_cols=189 Identities=19% Similarity=0.325 Sum_probs=167.9
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
...+..+..|.+|. ++|.|+.|+++..+|+.|+.+|+||+||+..++.++++.||...+.+| .|+|-+.|.++++ |
T Consensus 57 i~kp~~i~S~~~he-spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv--~f~P~~~~~a~gStd 133 (825)
T KOG0267|consen 57 IGKPNAITSLTGHE-SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV--DFHPYGEFFASGSTD 133 (825)
T ss_pred ccCCchhheeeccC-CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee--eeccceEEecccccc
Confidence 34555566789999 999999999999999999999999999999999999999999999999 7999999998854 9
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce-
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS- 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~- 1648 (1922)
..+++||++. ..|.+.+.+| .++.|+|+|++++.+ +.|.+++|||...|+....|+ +|...
T Consensus 134 td~~iwD~Rk--~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g---~ed~tvki~d~~agk~~~ef~---------~~e~~v 199 (825)
T KOG0267|consen 134 TDLKIWDIRK--KGCSHTYKSHTRVVDVLRLSPDGRWVASG---GEDNTVKIWDLTAGKLSKEFK---------SHEGKV 199 (825)
T ss_pred ccceehhhhc--cCceeeecCCcceeEEEeecCCCceeecc---CCcceeeeecccccccccccc---------cccccc
Confidence 9999999997 6789999876 778999999999998 889999999999999988886 44444
Q ss_pred -EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE
Q 000177 1649 -QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE 1700 (1922)
Q Consensus 1649 -vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe 1700 (1922)
.+.|+|..-++.+++ ++||+++...|.........+ +..|+|+|..+++|.+
T Consensus 200 ~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 200 QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 488999998888888 999999988888777777777 9999999999999884
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-14 Score=154.33 Aligned_cols=275 Identities=15% Similarity=0.195 Sum_probs=198.7
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-----Cc-e---eeeccCCCCeeEEEee
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN------SS-----SP-L---ESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~------tg-----k~-l---~tL~gHss~VtsLq~a 1560 (1922)
..|..+.+|... ..|.+++|+|.|.+.++||..++++|.... .+ ++ . +.-+.|.+.|+|. +
T Consensus 21 ~~f~~i~~l~ds--qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~--~ 96 (350)
T KOG0641|consen 21 KHFEAINILEDS--QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCT--A 96 (350)
T ss_pred cceEEEEEecch--hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEE--E
Confidence 346667777653 479999999999999999999999987542 11 11 1 1225689999999 8
Q ss_pred ecCCCcEEEEec-CCcEEEeccCCCCCC---cceEecc----ceeEEEcCC----CCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1561 LSGETQLLLSSS-SQDVHLWNASSIAGG---PMHSFEG----CKAARFSNS----GNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1561 fSpDG~lLaSSs-DgtVkLWDl~t~~gk---~l~tf~g----h~sVaFSPD----G~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
|+|+|++|++|+ |.+|++.-++..... .-..|.- ++.++|-.+ +..++++ +..|..|.+-|..+|+
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~--gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA--GAGDCKIYITDCGRGQ 174 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec--CCCcceEEEeecCCCC
Confidence 899999999965 999999877651111 1123332 377888653 4567766 4568889999999999
Q ss_pred eeeeeccccccccCCCCcceEEE-EcCCCCeEeecc-----EEEEcCCCcceeeecc--CC-----Cce-EEEEecCCCE
Q 000177 1629 LEAKLSDTSVNLTGRGHAYSQIH-FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ--FT-----DHG-GGGFHPAGNE 1694 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh~~~vVa-FSPdG~lLaSgg-----rLWDlrtgk~I~kf~g--h~-----~~V-sVaFSPdG~~ 1694 (1922)
..+.+. ||...+++ ++=+|-++++++ ++||++-..++.++.. |. ..+ +++..|.|+.
T Consensus 175 ~~~a~s---------ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 175 GFHALS---------GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred cceeec---------CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 988886 77777633 444677888888 9999999888887743 22 234 7899999999
Q ss_pred EEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC---
Q 000177 1695 VIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI--- 1764 (1922)
Q Consensus 1695 LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~--- 1764 (1922)
|++|. -+||++.+++++.+..|.. .+|.|||...|+.+++.+.. +++-|-.
T Consensus 246 l~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-------------------ikltdlqgdl 306 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-------------------IKLTDLQGDL 306 (350)
T ss_pred eeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-------------------EEEeecccch
Confidence 99998 3999999999999998876 89999999999999864332 2222211
Q ss_pred --CCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1765 --NYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1765 --dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
....+..-+.+..+..+.|+|.+-.+. +...+.++.+|..
T Consensus 307 a~el~~~vv~ehkdk~i~~rwh~~d~sfi------sssadkt~tlwa~ 348 (350)
T KOG0641|consen 307 AHELPIMVVAEHKDKAIQCRWHPQDFSFI------SSSADKTATLWAL 348 (350)
T ss_pred hhcCceEEEEeccCceEEEEecCccceee------eccCcceEEEecc
Confidence 112223335577788899999875433 1334577888864
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=179.91 Aligned_cols=270 Identities=19% Similarity=0.268 Sum_probs=200.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---Cceeeecc--CCCCeeEEEeeecCCCcEEEEe-c
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS---SPLESCTS--HQAPVTLVQSHLSGETQLLLSS-S 1572 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg---k~l~tL~g--Hss~VtsLq~afSpDG~lLaSS-s 1572 (1922)
+.+++| .|. .-|.++.+|...++++||++ |.|||||+... .++..+.+ ....|.++ ...|||+.|++| .
T Consensus 411 rq~~tL-~HG-EvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSc--kL~pdgrtLivGGe 485 (705)
T KOG0639|consen 411 RQINTL-AHG-EVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSC--KLLPDGRTLIVGGE 485 (705)
T ss_pred Hhhhhh-ccC-cEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeee--EecCCCceEEeccc
Confidence 344444 577 77888999999999999986 67999999532 23444433 35678888 789999988885 4
Q ss_pred CCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc-
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY- 1647 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~- 1647 (1922)
-.++.|||+..........+.. +..++.+||.+..+++ ..||.|.|||+.+...+..|. ||..
T Consensus 486 astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsc---csdGnI~vwDLhnq~~Vrqfq---------GhtDG 553 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSC---CSDGNIAVWDLHNQTLVRQFQ---------GHTDG 553 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeee---ccCCcEEEEEcccceeeeccc---------CCCCC
Confidence 7899999998743333333332 4778999999998888 789999999999999999886 6665
Q ss_pred -eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE---EEecCCCe-EEEEEcCCC
Q 000177 1648 -SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE---VWDLRKFR-LLRSVPSLD 1717 (1922)
Q Consensus 1648 -~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe---IWDLrTgk-lL~tl~gH~ 1717 (1922)
.++.++++|..|-++| +.||+++++.+...+...+.+++.++|++.+|+.|-+ +|=+.+.+ ....+.-|+
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlhe 633 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHE 633 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccc
Confidence 4599999999999999 9999999988877766666669999999999999973 77665533 334455566
Q ss_pred c--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEec
Q 000177 1718 Q--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1718 ~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~ 1795 (1922)
. -++.|.+.|+++++...++.-..| +.|+..+ |........|....++.++++|..-
T Consensus 634 ScVLSlKFa~cGkwfvStGkDnlLnaw--------rtPyGas-----------iFqskE~SsVlsCDIS~ddkyIVTG-- 692 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDNLLNAW--------RTPYGAS-----------IFQSKESSSVLSCDISFDDKYIVTG-- 692 (705)
T ss_pred cEEEEEEecccCceeeecCchhhhhhc--------cCccccc-----------eeeccccCcceeeeeccCceEEEec--
Confidence 5 589999999999998665543333 3444433 2223334568888889999987743
Q ss_pred CCCCCccceEEEEEe
Q 000177 1796 DDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1796 dds~d~dSsVRLyEV 1810 (1922)
..+....+|+|
T Consensus 693 ----SGdkkATVYeV 703 (705)
T KOG0639|consen 693 ----SGDKKATVYEV 703 (705)
T ss_pred ----CCCcceEEEEE
Confidence 23345667776
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=166.30 Aligned_cols=252 Identities=13% Similarity=0.143 Sum_probs=178.2
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CCce-eeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSNS-SSPL-ESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~t-gk~l-~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
+.|.+++||| ...+++.||.||+||+|+++. |... +....|.++|.++ +|+.||..++++ .|+.+++||+.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v--~WsddgskVf~g~~Dk~~k~wDL~S-- 103 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDV--CWSDDGSKVFSGGCDKQAKLWDLAS-- 103 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEE--EEccCCceEEeeccCCceEEEEccC--
Confidence 7899999999 566777999999999999976 4433 3446799999999 889999999885 599999999998
Q ss_pred CCcceEeccc----eeEEEcCCCC--EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1586 GGPMHSFEGC----KAARFSNSGN--LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaFSPDG~--~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
++ +.++..| ..+.|-+... .|+|| +.|++|+.||++..+.+.++. -+..+.+.+--..++
T Consensus 104 ~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R~~~pv~t~~----------LPeRvYa~Dv~~pm~ 169 (347)
T KOG0647|consen 104 GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTRSSNPVATLQ----------LPERVYAADVLYPMA 169 (347)
T ss_pred CC-eeeeeecccceeEEEEecCCCcceeEec---ccccceeecccCCCCeeeeee----------ccceeeehhccCcee
Confidence 54 4445443 7888887654 78888 999999999999999888876 222222222222233
Q ss_pred e--ecc---EEEEcCCCcce-eeeccCCCc-e-EEEEecCCCEEEEEe-----EEEecCCC--eEEEEEcCCC-------
Q 000177 1660 L--WNG---ILWDRRNSVPV-HRFDQFTDH-G-GGGFHPAGNEVIINS-----EVWDLRKF--RLLRSVPSLD------- 1717 (1922)
Q Consensus 1660 a--Sgg---rLWDlrtgk~I-~kf~gh~~~-V-sVaFSPdG~~LASGS-----eIWDLrTg--klL~tl~gH~------- 1717 (1922)
+ ++. .+|+++.+... +.....-.+ + +++..++..-.+.|+ .|..+..+ +.-.+++.|.
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 3 333 78999866432 222222122 2 888888877778888 26666544 3334455554
Q ss_pred -c---eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEE
Q 000177 1718 -Q---TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGL 1792 (1922)
Q Consensus 1718 -~---~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAV 1792 (1922)
. ++|+|+|.-..|+++. .+..|.+||......+.+... ..+|...+++.+|.++|-
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaG-------------------sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAG-------------------SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred ceEEecceEeecccceEEEec-------------------CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence 1 7899999877888763 345688888777766666444 667999999999998875
Q ss_pred Ee-cCCC
Q 000177 1793 IT-MDDQ 1798 (1922)
Q Consensus 1793 Ve-~dds 1798 (1922)
.- +|.+
T Consensus 311 A~gYDWS 317 (347)
T KOG0647|consen 311 ALGYDWS 317 (347)
T ss_pred Eeecccc
Confidence 43 4443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=170.68 Aligned_cols=187 Identities=19% Similarity=0.316 Sum_probs=148.1
Q ss_pred ceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQ 1574 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDg 1574 (1922)
-+|++.|+.|. ..|.+|.|++ ++..++++|.|++||+|+..-++.+.+|.||.+.|+.. .|+|. ..++++ |.|+
T Consensus 94 s~Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a--~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 94 SKPIHKFKEHK-REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA--AFSPHIPNLFASASGDG 170 (311)
T ss_pred CcchhHHHhhh-hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE--ecCCCCCCeEEEccCCc
Confidence 35899999999 9999999998 66788899999999999999999999999999999999 66774 456666 6799
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCcce
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++++||++.. ++.+. +..| .++.|+. +.+.++|| +.|+.|++||++.-+ .+..+ .+++..+.
T Consensus 171 ~l~lwdvr~~-gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg---~vd~~vr~wDir~~r~pl~eL-------~gh~~AVR 238 (311)
T KOG0277|consen 171 TLRLWDVRSP-GKFMS-IEAHNSEILCCDWSKYNHNVLATG---GVDNLVRGWDIRNLRTPLFEL-------NGHGLAVR 238 (311)
T ss_pred eEEEEEecCC-CceeE-EEeccceeEeecccccCCcEEEec---CCCceEEEEehhhccccceee-------cCCceEEE
Confidence 9999999874 54443 5544 7899998 55677777 899999999999744 22222 23444455
Q ss_pred EEEEcCCC-CeEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecC-CCEEEEEe
Q 000177 1649 QIHFSPSD-TMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPA-GNEVIINS 1699 (1922)
Q Consensus 1649 vVaFSPdG-~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPd-G~~LASGS 1699 (1922)
.++|||.. .+|++++ +|||...+ .++.+++.|+..+ .+.|++. +.++|+.+
T Consensus 239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 239 KVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred EEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 59999987 4566777 99999855 4777888888877 7888874 56888887
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-15 Score=167.65 Aligned_cols=227 Identities=20% Similarity=0.266 Sum_probs=174.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
.|.+.+|++-++|.+|. -+|+|++||+||++|+|+|.|..|++||+..|.+++.+. ..++|+..+|....+++.+++-
T Consensus 49 I~D~~T~~iar~lsaH~-~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 49 IYDFDTFRIARMLSAHV-RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred EEEccccchhhhhhccc-cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEE
Confidence 44567889999999999 999999999999999999999999999999999988776 4689999965544566677664
Q ss_pred cCCcEEEeccCCCCCCcceEecc----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEG----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~g----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
-+..-.+-++.. +++++-. ..+..|.+.|++|++| ...|.+.+||..|-+++..+.-+.
T Consensus 127 ~~~sp~vi~~s~----~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG---tsKGkllv~~a~t~e~vas~rits---- 195 (405)
T KOG1273|consen 127 MEESPVVIDFSD----PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG---TSKGKLLVYDAETLECVASFRITS---- 195 (405)
T ss_pred ecCCcEEEEecC----CceeeccCCCccccccccccccccCCCCEEEEe---cCcceEEEEecchheeeeeeeech----
Confidence 444444455543 2222211 1345699999999999 888999999999999998886111
Q ss_pred CCCCcceEEEEcCCCCeEeecc-----EEEEcCC-------C--cceeeeccCC---CceEEEEecCCCEEEEEe-----
Q 000177 1642 GRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN-------S--VPVHRFDQFT---DHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt-------g--k~I~kf~gh~---~~VsVaFSPdG~~LASGS----- 1699 (1922)
...+..+.|+..|+.++... +.|+++. + .+.++++..- .+-+++|+.+|.|++.++
T Consensus 196 --~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 196 --VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHA 273 (405)
T ss_pred --heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccccee
Confidence 12233488999999988666 7788762 1 2446665433 344899999999999998
Q ss_pred -EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1700 -EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 -eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
-||....|.+++.+.|... -.|.|+|--..|++.
T Consensus 274 LYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred EEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 2999999999999998875 588899988777765
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=177.01 Aligned_cols=213 Identities=13% Similarity=0.150 Sum_probs=173.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc--eeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..|.+|.++|||+.|++|+.-.++.|||+..... ...+....-..+.+ +.+||.++.++ ++||.|.|||+.. .
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyAL--a~spDakvcFsccsdGnI~vwDLhn--q 541 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL--AISPDAKVCFSCCSDGNIAVWDLHN--Q 541 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhh--hcCCccceeeeeccCCcEEEEEccc--c
Confidence 6799999999999999999999999999976543 23344444556677 88999998888 5799999999998 7
Q ss_pred CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1587 GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1587 k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
..++.|+|| .|+.++++|..|.+| +-|++|+.||++++..+.... ....+..+.++|++.+|+.+
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTG---GlDntvRcWDlregrqlqqhd--------F~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTG---GLDNTVRCWDLREGRQLQQHD--------FSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecC---CCccceeehhhhhhhhhhhhh--------hhhhheecccCCCccceeee
Confidence 788999987 789999999999999 899999999999988765432 12345568889999999976
Q ss_pred c---EEEEcCCCc-ceeeeccCCCce-EEEEecCCCEEEEEeE-----EEecCCCeEEEEEcCCCc-eeEEEccCCCEEE
Q 000177 1663 G---ILWDRRNSV-PVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VWDLRKFRLLRSVPSLDQ-TTITFNARGDVIY 1731 (1922)
Q Consensus 1663 g---rLWDlrtgk-~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IWDLrTgklL~tl~gH~~-~sVaFSPdG~~La 1731 (1922)
- .+|=+.+.+ ..+.+..|...| ++.|.+.|+++++.++ .|.+--|..+...+.... .++.+|-|.++|+
T Consensus 611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIV 690 (705)
T ss_pred cccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEE
Confidence 5 788777554 456667778888 9999999999999994 888877877776665444 7888999999999
Q ss_pred EEEccC
Q 000177 1732 AILRRN 1737 (1922)
Q Consensus 1732 Sgs~~d 1737 (1922)
+++.+.
T Consensus 691 TGSGdk 696 (705)
T KOG0639|consen 691 TGSGDK 696 (705)
T ss_pred ecCCCc
Confidence 996544
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=181.25 Aligned_cols=185 Identities=16% Similarity=0.264 Sum_probs=160.9
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--CceeeeccCCCCeeEEEeee-cCCCcEEEEec-CCcE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS--SPLESCTSHQAPVTLVQSHL-SGETQLLLSSS-SQDV 1576 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg--k~l~tL~gHss~VtsLq~af-SpDG~lLaSSs-DgtV 1576 (1922)
+..++.|. +.|+.+....+|+.|+++|.|.+|++|+...+ -++.++..|...|.|| ++ .++..++++|+ |+.|
T Consensus 66 ~asme~Hs-DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl--a~~ak~~~lvaSgGLD~~I 142 (735)
T KOG0308|consen 66 IASMEHHS-DWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL--AYIAKNNELVASGGLDRKI 142 (735)
T ss_pred hhhhhhhH-hHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee--eecccCceeEEecCCCccE
Confidence 56678899 99999999999999999999999999999887 5788899999999999 66 66777888865 9999
Q ss_pred EEeccCCCCCCcceEec---------c----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1577 HLWNASSIAGGPMHSFE---------G----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~---------g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
.|||+++...+.+.++. | +++++.+++|..|++| +..+.+++||.++++.+..+.
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG---gtek~lr~wDprt~~kimkLr--------- 210 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG---GTEKDLRLWDPRTCKKIMKLR--------- 210 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec---CcccceEEeccccccceeeee---------
Confidence 99999973223444443 2 3778889999889988 778999999999999998886
Q ss_pred CCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE
Q 000177 1644 GHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE 1700 (1922)
Q Consensus 1644 gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe 1700 (1922)
||..++ +-.++||..+++++ ++||+...+++++|..|...+ ++..+|+=.++.+|++
T Consensus 211 GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC
Confidence 888877 88999999999887 999999999999999999999 8888999999999994
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-14 Score=167.56 Aligned_cols=254 Identities=14% Similarity=0.187 Sum_probs=195.4
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce----ee------------e--ccCCCCeeEEEeeecC
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL----ES------------C--TSHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l----~t------------L--~gHss~VtsLq~afSp 1563 (1922)
+.+..|. -+|+||+++||++++++++.||+|.-|++.+++.. .+ . ++|...|.++ +.|+
T Consensus 136 ~~~~~H~-~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~--avS~ 212 (479)
T KOG0299|consen 136 RVIGKHQ-LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL--AVSS 212 (479)
T ss_pred eeecccc-CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE--EEcC
Confidence 4456788 89999999999999999999999999999887633 11 1 2788889999 8999
Q ss_pred CCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1564 ETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1564 DG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
||+||++|. |..|.||+.++ .+.++.|++| .+++|-.....++++ +.|++|++|++.....+.++.
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~gt~~lys~---s~Drsvkvw~~~~~s~vetly---- 283 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKGTSELYSA---SADRSVKVWSIDQLSYVETLY---- 283 (479)
T ss_pred CCcEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecCccceeee---ecCCceEEEehhHhHHHHHHh----
Confidence 999999975 99999999999 8888999987 567887777778888 889999999999887777775
Q ss_pred cccCCCCcceEEEEcC--CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecC
Q 000177 1639 NLTGRGHAYSQIHFSP--SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSP--dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
||+..++.++. -++.+-.++ ++|++..- .--.|.++...+ |++|-. ..++++|| -+|++.
T Consensus 284 -----GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 284 -----GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred -----CCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeec
Confidence 88888866554 344554554 99999543 333577888788 777765 46678888 399999
Q ss_pred CCeEEEEEc-CCC-------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC----Cc
Q 000177 1706 KFRLLRSVP-SLD-------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN----YS 1767 (1922)
Q Consensus 1706 TgklL~tl~-gH~-------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d----ys 1767 (1922)
+.+++.+.+ .|. .++++..|..+++++++ ...+++.|...+ ..
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-------------------~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-------------------WSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-------------------CCCceEEEEecCCccccc
Confidence 998888765 221 25788888888888874 234455554333 34
Q ss_pred eeeeeccCCceEEEEEcCCCceEEEE
Q 000177 1768 DIATIPVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1768 ~IaTidvkr~I~dLa~SPdds~LAVV 1793 (1922)
++..+....-|+.++|+++|.+|.+.
T Consensus 418 ~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 418 LLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eeeecccccEEEEEEEccCCCEEEEe
Confidence 56666777889999999999966554
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-14 Score=172.90 Aligned_cols=270 Identities=14% Similarity=0.221 Sum_probs=201.6
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeeccCCCCeeE-EEeeecCCCcEEEEecCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTL-VQSHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~gHss~Vts-Lq~afSpDG~lLaSSsDg 1574 (1922)
++..+++.+|. ..|..|++.+ +.+++++|.||++++|+-..++.+ ..+.+|.+.|.. +++.-+..+++++.+.|.
T Consensus 4 Y~ls~~l~gH~-~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHK-SDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCc-cchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 45678899999 8898888765 458999999999999997655544 356788888877 743223345566667799
Q ss_pred cEEEeccCCCCCCcceEeccc--eeEEEc--CCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE-
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC--KAARFS--NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ- 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh--~sVaFS--PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v- 1649 (1922)
+|.+|.... ..|+.++.+| +-++.+ .++. +++| +.|.++++|-+. ++...+. +|+..+
T Consensus 82 ~i~v~~~~~--~~P~~~LkgH~snVC~ls~~~~~~-~iSg---SWD~TakvW~~~--~l~~~l~---------gH~asVW 144 (745)
T KOG0301|consen 82 TIIVFKLSQ--AEPLYTLKGHKSNVCSLSIGEDGT-LISG---SWDSTAKVWRIG--ELVYSLQ---------GHTASVW 144 (745)
T ss_pred eEEEEecCC--CCchhhhhccccceeeeecCCcCc-eEec---ccccceEEecch--hhhcccC---------Ccchhee
Confidence 999999988 8899999998 223343 4455 8898 999999999764 4444443 666555
Q ss_pred -EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc
Q 000177 1650 -IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 -VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+.+-|.+ .++|++ ++|.- ++.+++|.+|++.| .+++-|++.++-++. ++|++ ++.++.++.+|..
T Consensus 145 Av~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn 220 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN 220 (745)
T ss_pred eeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccce
Confidence 7778888 666776 89975 78999999999999 899998876654444 69999 7999999999998
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ceEEEEEcCCCceEEEEec
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I~dLa~SPdds~LAVVe~ 1795 (1922)
.+++..+++..|+++..+ .++++|+.. .....+.... .||++.+-++|..+.
T Consensus 221 ~vYsis~~~~~~~Ivs~gED-------------------rtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvv---- 275 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGED-------------------RTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVV---- 275 (745)
T ss_pred EEEEEEecCCCCeEEEecCC-------------------ceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEE----
Confidence 788866777777776322 345666554 5566666655 799999888887533
Q ss_pred CCCCCccceEEEEEecCCCCCCC
Q 000177 1796 DDQEDMFSSARIYEIGRRRPTED 1818 (1922)
Q Consensus 1796 dds~d~dSsVRLyEVGr~r~~ED 1818 (1922)
...|+.||||.+.+.|-+++
T Consensus 276 ---g~SDG~VrVfT~~k~R~As~ 295 (745)
T KOG0301|consen 276 ---GGSDGRVRVFTVDKDRKASD 295 (745)
T ss_pred ---eccCceEEEEEecccccCCH
Confidence 22458999999887776543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=176.77 Aligned_cols=286 Identities=15% Similarity=0.211 Sum_probs=192.9
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCC---------------------cee------
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDS---SHIAVGSHTKELKIFDSNSSS---------------------PLE------ 1545 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG---~lLASGS~DGtIkIWDl~tgk---------------------~l~------ 1545 (1922)
..|+.+..++||. +.|.+++|..-+ -+|+|||.|..||||.+.-+. ...
T Consensus 179 d~f~~v~el~GH~-DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 179 DSFARVAELEGHT-DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred cceeEEEEeeccc-hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence 3678899999999 999999999744 389999999999999873221 111
Q ss_pred ----eeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEe-----c----cceeEEEcCCCCEEEEee
Q 000177 1546 ----SCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSF-----E----GCKAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1546 ----tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf-----~----gh~sVaFSPDG~~LaSgS 1611 (1922)
.+.||.+-|+++ .|+|.+..|++ |.|.++.+|.-.+..|--+... . |.+.+.|+|+++.|++-
T Consensus 258 s~eall~GHeDWV~sv--~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~- 334 (764)
T KOG1063|consen 258 SFEALLMGHEDWVYSV--WWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH- 334 (764)
T ss_pred ehhhhhcCcccceEEE--EEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe-
Confidence 124999999999 78999954544 7799999998876323222221 1 23778999999999887
Q ss_pred cCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc--------------------------
Q 000177 1612 TETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-------------------------- 1663 (1922)
Q Consensus 1612 ~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-------------------------- 1663 (1922)
+..|..++|-........... ...||...+ ++|+|.|++|++.|
T Consensus 335 --g~~Gg~hlWkt~d~~~w~~~~------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 335 --GRTGGFHLWKTKDKTFWTQEP------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred --cccCcEEEEeccCccceeecc------ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc
Confidence 777889999833211111110 012454444 66666666666555
Q ss_pred -------------------------EEEEcC-------------------------------------------CCc---
Q 000177 1664 -------------------------ILWDRR-------------------------------------------NSV--- 1672 (1922)
Q Consensus 1664 -------------------------rLWDlr-------------------------------------------tgk--- 1672 (1922)
++|+.. +|.
T Consensus 407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 111111 000
Q ss_pred ------------------------------ceeeeccCCCce-EEEEecCCCEEEEEeE----------EEecCCCeEEE
Q 000177 1673 ------------------------------PVHRFDQFTDHG-GGGFHPAGNEVIINSE----------VWDLRKFRLLR 1711 (1922)
Q Consensus 1673 ------------------------------~I~kf~gh~~~V-sVaFSPdG~~LASGSe----------IWDLrTgklL~ 1711 (1922)
.++++.||...+ +++.+|+|+++|++++ +|+..+...++
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~ 566 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ 566 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh
Confidence 012334555556 8899999999999983 99999999888
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCce
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSF 1789 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~ 1789 (1922)
.+.+|.- +.++|||||++|++++++....++... -. ....| .|.. .-...|-|++..|+|++.+
T Consensus 567 ~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~----~~--~~~e~------~fa~--~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ----ED--IKDEF------RFAC--LKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred eecccceEEEEEEECCCCcEEEEeecCceEEeeeee----cc--cchhh------hhcc--ccccceEEEEcccCcccce
Confidence 9999876 899999999999999876654443210 00 00001 1111 1223566999999999999
Q ss_pred EEEEecCCCCCccceEEEEEecCC
Q 000177 1790 VGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
++.. ..|..|++|+....
T Consensus 633 FaTa------SRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATA------SRDKKVKVWEEPDL 650 (764)
T ss_pred eEEe------cCCceEEEEeccCc
Confidence 8854 35688999986443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=171.75 Aligned_cols=286 Identities=14% Similarity=0.217 Sum_probs=195.2
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEecc
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl 1581 (1922)
..++||+ +.|.|+...|.|.+|++|+.||+|+||.+.+|.|++++.- .+.|.||.|...++-.+|+.+....+.|-+.
T Consensus 394 lvyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 4578999 9999999999999999999999999999999999998863 4689999443333444555543333443332
Q ss_pred CCC---------------------------------C----CC--cceEeccceeEEEcCCCCEEEEeecCCCCCeEEEE
Q 000177 1582 SSI---------------------------------A----GG--PMHSFEGCKAARFSNSGNLFAALPTETSDRGILLY 1622 (1922)
Q Consensus 1582 ~t~---------------------------------~----gk--~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIW 1622 (1922)
.-+ . +. .+..++.++.+.||..|+||++...++....|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 110 0 00 01112224789999999999999777788899999
Q ss_pred ECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1623 DIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1623 DlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
++...+...-|. ........+.|+|.-.+++.++ ++||+..+..++++.....++ +++.||+|..|+.
T Consensus 552 QLSK~~sQ~PF~-------kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 552 QLSKRKSQSPFR-------KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ecccccccCchh-------hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 998766544442 0122334499999999888777 999999988888888888888 8999999999999
Q ss_pred Ee---E-EE-ecCC-CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhh-hhcccccccCCcceEEEEecCCCce
Q 000177 1698 NS---E-VW-DLRK-FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMS-AVHTRRVKHPLFAAFRTVDAINYSD 1768 (1922)
Q Consensus 1698 GS---e-IW-DLrT-gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s-~lh~rr~ksp~~ssFrt~Da~dys~ 1768 (1922)
|+ + +| |+.- .++.+++.-|.. ++|+|++.-..+++++.+....++. .+-+.-++.|+.-.++.+.+.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH---- 700 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH---- 700 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc----
Confidence 99 2 45 6653 467777877776 8999999999999986433221110 000011112211111111110
Q ss_pred eeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1769 IATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1769 IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
...-.-.|.+..|+|...++-.. ..++.+|+|
T Consensus 701 --~~~~~~gVLd~~wHP~qpWLfsA------GAd~tirlf 732 (733)
T KOG0650|consen 701 --EKTNDLGVLDTIWHPRQPWLFSA------GADGTIRLF 732 (733)
T ss_pred --eeecccceEeecccCCCceEEec------CCCceEEee
Confidence 00012358999999999987744 345788887
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-14 Score=175.45 Aligned_cols=215 Identities=14% Similarity=0.225 Sum_probs=165.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
|. ..|.+++.. +.+|++|+.+++|.+|...+++.-..+.-.+-+++++ +|+.+|++++.| +|-.|++-++.+
T Consensus 55 ~g-~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~--~v~g~g~~iaagsdD~~vK~~~~~D-- 127 (933)
T KOG1274|consen 55 SG-ELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDL--AVSGSGKMIAAGSDDTAVKLLNLDD-- 127 (933)
T ss_pred cC-ceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEE--EEecCCcEEEeecCceeEEEEeccc--
Confidence 55 677887765 5599999999999999999887765565567889999 889999999995 588999999987
Q ss_pred CCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC-CCcceEEEEcCCCCeEe
Q 000177 1586 GGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR-GHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~-gh~~~vVaFSPdG~lLa 1660 (1922)
......+.+| .++.|+|.+++|++. +.||.|+|||+.++.+..++......+... ......++|+|+|..++
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvs---s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVS---SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEE---ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 6667778776 789999999999998 889999999999999988886433222222 22233499999965555
Q ss_pred ecc-----EEEEcCCCcceeeecc--CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCceeEEEccCC
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQ--FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQTTITFNARG 1727 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~g--h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~~sVaFSPdG 1727 (1922)
..+ ++|+...+....++.. +...+ .+.|+|+|+|||+++ -|||+.+... .......++++|.|++
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--HEFKRAVCCEAWKPNA 282 (933)
T ss_pred eeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--ccccceeEEEecCCCC
Confidence 333 8999988887777643 22324 899999999999999 3999997221 2222334899999998
Q ss_pred CEEEEE
Q 000177 1728 DVIYAI 1733 (1922)
Q Consensus 1728 ~~LaSg 1733 (1922)
+.|-..
T Consensus 283 n~it~~ 288 (933)
T KOG1274|consen 283 NAITLI 288 (933)
T ss_pred CeeEEE
Confidence 876544
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-14 Score=168.00 Aligned_cols=221 Identities=15% Similarity=0.250 Sum_probs=164.5
Q ss_pred ceeeEEe-cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEecCCc
Q 000177 1498 FRPWRTC-RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSSSSQD 1575 (1922)
Q Consensus 1498 frpirtL-rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSSsDgt 1575 (1922)
+.+.+.- ++|. ..|.+++.|+||+||++|+.|..|.||+.++.+.++.|.+|.+.|.++ +|-... +++.+|.|++
T Consensus 191 ~~~~k~~r~~h~-keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L--~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 191 GNPLKESRKGHV-KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSL--AFRKGTSELYSASADRS 267 (479)
T ss_pred cCCCCccccccc-ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeee--eeecCccceeeeecCCc
Confidence 3344333 4899 999999999999999999999999999999999999999999999999 555444 4555577999
Q ss_pred EEEeccCCCCCCcceEeccceeEEEcC----CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGCKAARFSN----SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh~sVaFSP----DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|++|+++. ...+.++-+|....+.- -++.+-+| +.|+++++|++.....+ .+. +.+....+++
T Consensus 268 vkvw~~~~--~s~vetlyGHqd~v~~IdaL~reR~vtVG---grDrT~rlwKi~eesql-ifr-------g~~~sidcv~ 334 (479)
T KOG0299|consen 268 VKVWSIDQ--LSYVETLYGHQDGVLGIDALSRERCVTVG---GRDRTVRLWKIPEESQL-IFR-------GGEGSIDCVA 334 (479)
T ss_pred eEEEehhH--hHHHHHHhCCccceeeechhcccceEEec---cccceeEEEecccccee-eee-------CCCCCeeeEE
Confidence 99999987 56677777875544433 24444444 79999999999543222 222 1223344577
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccC------------CCce-EEEEecCCCEEEEEe-----EEEecCCC-
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF------------TDHG-GGGFHPAGNEVIINS-----EVWDLRKF- 1707 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh------------~~~V-sVaFSPdG~~LASGS-----eIWDLrTg- 1707 (1922)
|-.+. .+++++ .||++.+.+++.++... +.|+ +++..|....+++|+ ++|-+..+
T Consensus 335 ~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 335 FINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred Eeccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 76554 555665 89999999998877421 1167 889999999999999 79988765
Q ss_pred ---eEEEEEcCCC-ceeEEEccCCCEEEEEEc
Q 000177 1708 ---RLLRSVPSLD-QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1708 ---klL~tl~gH~-~~sVaFSPdG~~LaSgs~ 1735 (1922)
.++..++-.. .++++|+++|+.|+++..
T Consensus 414 r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 414 RAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 5566665222 289999999998888843
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=158.15 Aligned_cols=222 Identities=16% Similarity=0.213 Sum_probs=162.4
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
+....|. ++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|..+|..+.|.-.+.-.+|+|| .|.+|+.||
T Consensus 66 ka~~~~~-~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 66 KAQQSHD-GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhhccC-CCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 4455688 999999999999999999999999999999994 5678889999999955333344588886 499999999
Q ss_pred cCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1581 ASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
++. ..++.++.-- ++-+..--..+++.+ ..++.|.+|+++.+....... . ....+...+++..++....
T Consensus 144 ~R~--~~pv~t~~LPeRvYa~Dv~~pm~vVa---ta~r~i~vynL~n~~te~k~~--~---SpLk~Q~R~va~f~d~~~~ 213 (347)
T KOG0647|consen 144 TRS--SNPVATLQLPERVYAADVLYPMAVVA---TAERHIAVYNLENPPTEFKRI--E---SPLKWQTRCVACFQDKDGF 213 (347)
T ss_pred cCC--CCeeeeeeccceeeehhccCceeEEE---ecCCcEEEEEcCCCcchhhhh--c---CcccceeeEEEEEecCCce
Confidence 998 7777776542 322222233456666 678899999998765433221 0 0124666677777777766
Q ss_pred eecc-----EEEEcCCC--cceeeeccCCC---------ce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC
Q 000177 1660 LWNG-----ILWDRRNS--VPVHRFDQFTD---------HG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1660 aSgg-----rLWDlrtg--k~I~kf~gh~~---------~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~ 1717 (1922)
+.++ -+..+..+ +.-.+|+-|.. .| +++|||.-..|++.+ .+||-.....+++.+.|.
T Consensus 214 alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~ 293 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP 293 (347)
T ss_pred EeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC
Confidence 7666 45555554 33334544432 12 789999988888876 499999888888888787
Q ss_pred c--eeEEEccCCCEEEEEEc
Q 000177 1718 Q--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1718 ~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+ ++..||.+|.+++-+..
T Consensus 294 qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 294 QPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred CccceeEecCCCCEEEEEee
Confidence 7 89999999999887644
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=160.58 Aligned_cols=118 Identities=12% Similarity=0.196 Sum_probs=98.0
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC------CCCceeee-ccCCCCeeEEEeeecCCCcEEEEec-CC
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN------SSSPLESC-TSHQAPVTLVQSHLSGETQLLLSSS-SQ 1574 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~------tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSSs-Dg 1574 (1922)
.+.+|. ++|+++.||.++++|++|+.|..+++|+++ +.+++... ..|.+.|+|+ .|...+++|.+|. ++
T Consensus 51 D~~~H~-GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L--~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 51 DVREHT-GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSL--EFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhc-cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEE--EEccCCeeEecCCCcc
Confidence 467899 999999999999999999999999999985 33555544 3456899999 8888888999965 99
Q ss_pred cEEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1575 DVHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
+|.+.|+.+ .+.+..+.. +..+..+|..+.|++. +.++.|.+||++..+
T Consensus 128 ~VI~HDiEt--~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~---t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 128 TVIKHDIET--KQSIYVANENNNRGDVYHMDQHPTDNTLIVV---TRAKLVSFIDNRDRQ 182 (609)
T ss_pred eeEeeeccc--ceeeeeecccCcccceeecccCCCCceEEEE---ecCceEEEEeccCCC
Confidence 999999998 566665542 4678889988888888 889999999998654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-14 Score=166.81 Aligned_cols=218 Identities=18% Similarity=0.346 Sum_probs=162.9
Q ss_pred CCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC----------CceeeeccCCCCeeEEEeeecCCCcEEEEecCC
Q 000177 1506 DDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS----------SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg----------k~l~tL~gHss~VtsLq~afSpDG~lLaSSsDg 1574 (1922)
-|. +.|+.+.+-| +..+|++++..+.|.|||..+. .+-.++.||...-++|.|.....|.+|.++.|+
T Consensus 122 ~h~-gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHD-GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred cCC-ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 488 9999999999 5568889999999999998542 122378999998889955444456666668899
Q ss_pred cEEEeccCCCCC-----CcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCC--ceeeeeccccccccC
Q 000177 1575 DVHLWNASSIAG-----GPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTY--QLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1575 tVkLWDl~t~~g-----k~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTg--k~i~tL~d~s~~~~~ 1642 (1922)
+|++||+..... .+...|.+| ..++|++ +...|+++ +.|+.+.|||+|++ ++.... ..
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv---~dd~~L~iwD~R~~~~~~~~~~-------~a 270 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV---GDDGKLMIWDTRSNTSKPSHSV-------KA 270 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee---cCCCeEEEEEcCCCCCCCcccc-------cc
Confidence 999999976322 234556665 6789999 45778888 89999999999963 222222 22
Q ss_pred CCCcceEEEEcCCCCeEe-ecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCCC-EEEEEe-----EEEecCCC-
Q 000177 1643 RGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVWDLRKF- 1707 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIWDLrTg- 1707 (1922)
+....++++|+|-+.+++ +++ .|||+|+- +++++|.+|...| .|.|+|+.. .|++++ .|||+..-
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 344566699999776555 555 89999975 5899999999999 999999865 555555 49999642
Q ss_pred -------------eEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1708 -------------RLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1708 -------------klL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
+++..-.||.. +.+.|+|+..+++++.
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV 392 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence 23455567776 7999999999887663
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=159.38 Aligned_cols=222 Identities=16% Similarity=0.221 Sum_probs=166.3
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---CceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS---SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg---k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
..|. +.|..+...--|++|+|++.|++||||.+..+ +.+.++.||.+||+.+.|+.-.-|.+|++|+ |+.|.||.
T Consensus 8 t~H~-D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHE-DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhh-hhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4688 88888888888999999999999999999765 4577899999999999776555799999976 99999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCc--eeeeeccccccccCCCCcceEEEE
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQ--LEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk--~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
-..+.....+.+..| ++++|.|. |-.|+++ +.||.|.|.+.++.. ....+. ..|...++.++|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca---sSDG~vsvl~~~~~g~w~t~ki~------~aH~~GvnsVsw 157 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA---SSDGKVSVLTYDSSGGWTTSKIV------FAHEIGVNSVSW 157 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEe---eCCCcEEEEEEcCCCCccchhhh------hccccccceeee
Confidence 887322233444443 89999996 5677777 899999999987641 111111 112233445999
Q ss_pred cCC---C-----------CeEeecc-----EEEEcCCCc--ceeeeccCCCce-EEEEecCC----CEEEEEeE-----E
Q 000177 1653 SPS---D-----------TMLLWNG-----ILWDRRNSV--PVHRFDQFTDHG-GGGFHPAG----NEVIINSE-----V 1701 (1922)
Q Consensus 1653 SPd---G-----------~lLaSgg-----rLWDlrtgk--~I~kf~gh~~~V-sVaFSPdG----~~LASGSe-----I 1701 (1922)
.|- | +.|+++| +||+..++. .-++|.+|.+++ .++|.|.- .+|+++|. |
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 886 4 5588888 999998864 456699999999 99999974 47899983 8
Q ss_pred EecCC------CeEEEEEcCCCceeEEEccCCCEEEEEEccC
Q 000177 1702 WDLRK------FRLLRSVPSLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1702 WDLrT------gklL~tl~gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
|-.+. .++++.++ ...+.+.||+.|++|+.+..++
T Consensus 238 wt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred EEecCccCcccccccccCC-cceEEEEEeccccEEEEecCCc
Confidence 87652 23344433 1238999999999999886555
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-13 Score=165.58 Aligned_cols=271 Identities=18% Similarity=0.193 Sum_probs=207.7
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S 1571 (1922)
|.....+.+++|+++. +.|+++.=+|-=..++.|..+|+|.|+|+..++.+.+|+.-.+.|+++ +|..||..+.+ |
T Consensus 187 ~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl--SFrtDG~p~las~ 263 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFF-SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL--SFRTDGNPLLASG 263 (910)
T ss_pred EEeccCcEEEEecccc-cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE--EeccCCCeeEEec
Confidence 4467888999999999 999999999988899999999999999999999999998556999999 88989886665 4
Q ss_pred -cCCcEEEeccCCCCCCcceEec-----------------------------------------------cc----e---
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFE-----------------------------------------------GC----K--- 1596 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~-----------------------------------------------gh----~--- 1596 (1922)
..|.+.+||++. .+.+.... || .
T Consensus 264 ~~~G~m~~wDLe~--kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ir 341 (910)
T KOG1539|consen 264 RSNGDMAFWDLEK--KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIR 341 (910)
T ss_pred cCCceEEEEEcCC--CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhee
Confidence 378999999875 11111000 00 1
Q ss_pred --------------------------------------------------------------------------------
Q 000177 1597 -------------------------------------------------------------------------------- 1596 (1922)
Q Consensus 1597 -------------------------------------------------------------------------------- 1596 (1922)
T Consensus 342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence
Q ss_pred -------------------------------eEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1597 -------------------------------AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1597 -------------------------------sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+++.++.|++.+.| ...|+|-+|++++|-...++. ....|
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG---~S~G~Id~fNmQSGi~r~sf~------~~~ah 492 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG---YSKGTIDRFNMQSGIHRKSFG------DSPAH 492 (910)
T ss_pred ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe---ccCCeEEEEEcccCeeecccc------cCccc
Confidence 12233333333333 334455555555554444442 01234
Q ss_pred cceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1646 AYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1646 ~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
...+ ++....++.+++++ ++||...+.+++++.-......+.+|.....++++. .++|+.|.+.++.+
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f 572 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF 572 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh
Confidence 4444 67777778899887 999999998888887666666888888777777666 48999999999999
Q ss_pred cCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEE
Q 000177 1714 PSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1714 ~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LA 1791 (1922)
.||.. +.++|||+|++|+++. +++.+++||.-+...|-.+-++.+...+.++|+|.++|
T Consensus 573 ~gh~nritd~~FS~DgrWlisas-------------------mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 573 WGHGNRITDMTFSPDGRWLISAS-------------------MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred hccccceeeeEeCCCCcEEEEee-------------------cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 99988 8999999999999984 66789999999999999998999999999999999999
Q ss_pred EEecC
Q 000177 1792 LITMD 1796 (1922)
Q Consensus 1792 VVe~d 1796 (1922)
++..+
T Consensus 634 T~Hvd 638 (910)
T KOG1539|consen 634 TVHVD 638 (910)
T ss_pred EEEec
Confidence 98644
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=169.26 Aligned_cols=211 Identities=14% Similarity=0.249 Sum_probs=170.5
Q ss_pred ceeeEEecCCCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCc
Q 000177 1498 FRPWRTCRDDAGALLTC-ITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQD 1575 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~-LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgt 1575 (1922)
+-....+.+|. +.|.+ ++|-+ ++-.|++|+.|++|.+|......++.++++|.+.|.++ +...++.+|.+|.|.+
T Consensus 47 ~l~~~~~~~~~-g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~l--s~~~~~~~iSgSWD~T 123 (745)
T KOG0301|consen 47 YLETHAFEGPK-GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSL--SIGEDGTLISGSWDST 123 (745)
T ss_pred cccceecccCc-ceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeee--ecCCcCceEecccccc
Confidence 34456688888 88877 88886 45569999999999999999999999999999999999 6566777444467999
Q ss_pred EEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--
Q 000177 1576 VHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ-- 1649 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v-- 1649 (1922)
+++|-.. ++...+.+| +.+.+-|.+ .++|| +.|++|++|.- ++++++|. +|...+
T Consensus 124 akvW~~~----~l~~~l~gH~asVWAv~~l~e~-~~vTg---saDKtIklWk~--~~~l~tf~---------gHtD~VRg 184 (745)
T KOG0301|consen 124 AKVWRIG----ELVYSLQGHTASVWAVASLPEN-TYVTG---SADKTIKLWKG--GTLLKTFS---------GHTDCVRG 184 (745)
T ss_pred eEEecch----hhhcccCCcchheeeeeecCCC-cEEec---cCcceeeeccC--Cchhhhhc---------cchhheee
Confidence 9999885 467778887 666777776 78898 89999999986 67778786 787776
Q ss_pred EEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc--CCC
Q 000177 1650 IHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP--SLD 1717 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~--gH~ 1717 (1922)
+++-+++.++-++. ++|++ +|.++..+.+|++.+ ++...+++..|++++ +||+.. .+.+.+. +..
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtts 261 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTS 261 (745)
T ss_pred eEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccc
Confidence 88888776554333 99998 789999999999999 888777888888888 599987 5555554 444
Q ss_pred ceeEEEccCCCEEEEE
Q 000177 1718 QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1718 ~~sVaFSPdG~~LaSg 1733 (1922)
.|++.+-++|+.++.+
T Consensus 262 iWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 262 IWSAKVLLNGDIVVGG 277 (745)
T ss_pred eEEEEEeeCCCEEEec
Confidence 5899999999888776
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-14 Score=158.14 Aligned_cols=214 Identities=17% Similarity=0.250 Sum_probs=164.3
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------CC----------------------------
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS------NS---------------------------- 1540 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl------~t---------------------------- 1540 (1922)
....+.+.++.||. +.|+|++|++.+.+++|+|.|++.+||.. ..
T Consensus 177 ~Esg~CL~~Y~GH~-GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~ 255 (481)
T KOG0300|consen 177 LESGACLATYTGHT-GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEK 255 (481)
T ss_pred eccccceeeecccc-cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccc
Confidence 45566778889999 99999999999999999999999999972 11
Q ss_pred --C----CceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEE
Q 000177 1541 --S----SPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAA 1609 (1922)
Q Consensus 1541 --g----k~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaS 1609 (1922)
+ .++..|.+|...|.+. .|-..|+.+++ +.|.+..|||+++ +.++..+.|| +.++-||..+++++
T Consensus 256 sD~~tiRvPl~~ltgH~~vV~a~--dWL~gg~Q~vTaSWDRTAnlwDVEt--ge~v~~LtGHd~ELtHcstHptQrLVvT 331 (481)
T KOG0300|consen 256 SDGHTIRVPLMRLTGHRAVVSAC--DWLAGGQQMVTASWDRTANLWDVET--GEVVNILTGHDSELTHCSTHPTQRLVVT 331 (481)
T ss_pred cCCceeeeeeeeeeccccceEeh--hhhcCcceeeeeeccccceeeeecc--CceeccccCcchhccccccCCcceEEEE
Confidence 0 1244678999999998 66777888877 6699999999999 8999999997 67888999999999
Q ss_pred eecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCc-ceeeeccCC
Q 000177 1610 LPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSV-PVHRFDQFT 1681 (1922)
Q Consensus 1610 gS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk-~I~kf~gh~ 1681 (1922)
. +.|.+.++||++.. +.... .+.||...+ +.|..+++. ++++ ++||+++-+ ++.++....
T Consensus 332 s---SrDtTFRLWDFRea--I~sV~------VFQGHtdtVTS~vF~~dd~v-VSgSDDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 332 S---SRDTTFRLWDFREA--IQSVA------VFQGHTDTVTSVVFNTDDRV-VSGSDDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred e---ccCceeEeccchhh--cceee------eecccccceeEEEEecCCce-eecCCCceEEEeeeccccCcceeeecCC
Confidence 8 89999999999842 22221 224777665 778776654 4555 999999764 777776555
Q ss_pred CceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEc-----CCCc--eeEEEccC
Q 000177 1682 DHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP-----SLDQ--TTITFNAR 1726 (1922)
Q Consensus 1682 ~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~-----gH~~--~sVaFSPd 1726 (1922)
....++.+..++.|++-. ++||+. |..+..++ +|.. +|++|..+
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeecccc
Confidence 444778888888888876 599997 55555554 5554 68888643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-13 Score=152.76 Aligned_cols=250 Identities=14% Similarity=0.188 Sum_probs=175.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
+.|+.+.|+|.++.|+.+++||++++||+........++ |..++.++ +|.++.+.+..+.||.|+++|+.+.....+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c--~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDC--AFADESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeee--eccCCceEEEeccCceEEEEEecCCcceee
Confidence 789999999999999999999999999998875555554 89999999 888776666667799999999997322222
Q ss_pred eEe-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1590 HSF-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1590 ~tf-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
.+. .+++|+.+++-...+++| +.|++|++||.+......++. ....+.+.+-.|+.|+.++
T Consensus 91 gth~~~i~ci~~~~~~~~vIsg---sWD~~ik~wD~R~~~~~~~~d----------~~kkVy~~~v~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISG---SWDKTIKFWDPRNKVVVGTFD----------QGKKVYCMDVSGNRLVVGTSDRKV 157 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEc---ccCccEEEEeccccccccccc----------cCceEEEEeccCCEEEEeecCceE
Confidence 222 235899999988889998 999999999999866555554 2235566666777777644
Q ss_pred EEEEcCCCccee-eec-cCCCce-EEEEecCCCEEEEEe-------EEEecCC--CeEEEEEcCCCc-----------ee
Q 000177 1664 ILWDRRNSVPVH-RFD-QFTDHG-GGGFHPAGNEVIINS-------EVWDLRK--FRLLRSVPSLDQ-----------TT 1720 (1922)
Q Consensus 1664 rLWDlrtgk~I~-kf~-gh~~~V-sVaFSPdG~~LASGS-------eIWDLrT--gklL~tl~gH~~-----------~s 1720 (1922)
.+||+|+-.... ... ...-.+ ++++-|++.=.+.+| +.+|... .+.-..++.|.. +.
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 899999765322 111 222334 899999887666666 3455541 112223343322 79
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEe
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe 1794 (1922)
++|+|--..+++|..+.. +..||..+.+.+..+.. +..|..++++.+|..+|+..
T Consensus 238 i~Fhp~~~tfaTgGsDG~-------------------V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGI-------------------VNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eEeccccceEEecCCCce-------------------EEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 999999888999854432 23344444443333332 45689999999999999875
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-13 Score=150.91 Aligned_cols=269 Identities=18% Similarity=0.212 Sum_probs=178.4
Q ss_pred cCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC------------ce---eeeccCCCCeeEEEeeecCCCcEE
Q 000177 1505 RDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSS------------PL---ESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk------------~l---~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
+.|. +.|+++...+ .|+++++|+.||.|.+||++.-. ++ ..-.+|...|.++.|.....|-+.
T Consensus 40 r~Hg-GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPHG-GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred ccCC-CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 5688 9999999998 78999999999999999996432 11 112578999999977544444443
Q ss_pred EEecCCcEEEeccCCCCCCcceEec--c-ceeEEEcCC---CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1569 LSSSSQDVHLWNASSIAGGPMHSFE--G-CKAARFSNS---GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1569 aSSsDgtVkLWDl~t~~gk~l~tf~--g-h~sVaFSPD---G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
.++-|.++||||.++ .+....|+ + +.+-+|+|- ...|++| ..|-.|++.|+.+|.+.+++.
T Consensus 119 ssSFDhtlKVWDtnT--lQ~a~~F~me~~VYshamSp~a~sHcLiA~g---tr~~~VrLCDi~SGs~sH~Ls-------- 185 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNT--LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG---TRDVQVRLCDIASGSFSHTLS-------- 185 (397)
T ss_pred cccccceEEEeeccc--ceeeEEeecCceeehhhcChhhhcceEEEEe---cCCCcEEEEeccCCcceeeec--------
Confidence 335599999999998 45444443 3 466678883 3456665 788999999999999999997
Q ss_pred CCCcceE--EEEcCCCCeEeecc------EEEEcCCC-cceeeeccCC--------------Cce-EEEEecCCCEEEEE
Q 000177 1643 RGHAYSQ--IHFSPSDTMLLWNG------ILWDRRNS-VPVHRFDQFT--------------DHG-GGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1643 ~gh~~~v--VaFSPdG~lLaSgg------rLWDlrtg-k~I~kf~gh~--------------~~V-sVaFSPdG~~LASG 1698 (1922)
||...+ +.|+|...+++..+ ++||+|.. -+...++.|+ +.+ +++|+.+|.++++.
T Consensus 186 -GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 186 -GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred -cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 888777 89999999888444 99999964 3555554443 334 78999999999998
Q ss_pred e-----EEEecCCCeEE-EEEc--CCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee
Q 000177 1699 S-----EVWDLRKFRLL-RSVP--SLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI 1769 (1922)
Q Consensus 1699 S-----eIWDLrTgklL-~tl~--gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I 1769 (1922)
+ ++|+..+|+-. +.+. .|.+ ...+|. +-++ ....+ +-.|...++.++....|+.|
T Consensus 265 gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-----~~~~---~s~vf--------v~~p~~~~lall~~~sgs~i 328 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-----IQSM---DSDVF--------VLFPNDGSLALLNLLEGSFV 328 (397)
T ss_pred cCccceEEeecccCcccccccccccccccccceEE-----Eeec---ccceE--------EEEecCCeEEEEEccCceEE
Confidence 8 59999887532 1111 1222 233333 1111 00000 11234566677777777777
Q ss_pred eeeccCC-ceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1770 ATIPVDR-CVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1770 aTidvkr-~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
...+... +|...++-|+=..+ ...++++.+..|.+
T Consensus 329 r~l~~h~k~i~c~~~~~~fq~~------~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 329 RRLSTHLKRINCAAYRPDFEQC------FTGDMNGNIYMWSP 364 (397)
T ss_pred EeeecccceeeEEeecCchhhh------hccccCCccccccc
Confidence 6666543 34444444432222 23455566666765
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=162.17 Aligned_cols=240 Identities=13% Similarity=0.166 Sum_probs=184.2
Q ss_pred cccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcee--eeccCCC-Cee
Q 000177 1480 TYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLE--SCTSHQA-PVT 1555 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~--tL~gHss-~Vt 1555 (1922)
..+|+++.....+..-..-..++.+.--. .+|.++.|.|+|. .+++++....+++||+.+.+... ...|+.. .+.
T Consensus 229 lvaG~d~~lrifqvDGk~N~~lqS~~l~~-fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e 307 (514)
T KOG2055|consen 229 LVAGLDGTLRIFQVDGKVNPKLQSIHLEK-FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSME 307 (514)
T ss_pred EEecCCCcEEEEEecCccChhheeeeecc-CccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhh
Confidence 34555544433333333333444444444 7899999999999 99999999999999998887543 3455553 333
Q ss_pred EEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEec--c-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1556 LVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFE--G-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1556 sLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~--g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
.. ..++++++|+. |..|.|.|....+ +..+.+|+ | +..+.|+.+++.|+.+ +.+|.|.+||+++..++.
T Consensus 308 ~F--eVShd~~fia~~G~~G~I~lLhakT--~eli~s~KieG~v~~~~fsSdsk~l~~~---~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 308 RF--EVSHDSNFIAIAGNNGHIHLLHAKT--KELITSFKIEGVVSDFTFSSDSKELLAS---GGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred ee--EecCCCCeEEEcccCceEEeehhhh--hhhhheeeeccEEeeEEEecCCcEEEEE---cCCceEEEEecCCcceEE
Confidence 33 67999999988 7799999999988 77777765 3 4889999999999888 788999999999999999
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC------CcceeeeccCCCce-EEEEecCCCEEEEEe
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN------SVPVHRFDQFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt------gk~I~kf~gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
++.+.- +-....++.++++.||++++ .|||..+ .+|+..+......| ++.|+|+++.|+++|
T Consensus 381 rf~D~G------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 381 RFVDDG------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred EEeecC------ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 987321 22234489999999999998 7999663 57899998888888 999999999999999
Q ss_pred -------EEEecCCCeEEEEEcCCC-----ceeEEEccCCCEEEEE
Q 000177 1700 -------EVWDLRKFRLLRSVPSLD-----QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 -------eIWDLrTgklL~tl~gH~-----~~sVaFSPdG~~LaSg 1733 (1922)
++-++.+......++... .+|++|||.|-+|+.|
T Consensus 455 ~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 455 RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEee
Confidence 477777666666665332 2799999999999998
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.9e-14 Score=165.48 Aligned_cols=211 Identities=13% Similarity=0.228 Sum_probs=170.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC-----
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS----- 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t----- 1583 (1922)
++|.|++-+|+|.+|+.|+-.|.|++|.+.+|..+..+.+|-..|++| .|+.||.+|+|+ .||.|.+|++-.
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL--~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL--KFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE--EEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 789999999999999999999999999999999999999999999999 899999999995 599999998743
Q ss_pred --CCCCcceEeccc----eeE--EEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1584 --IAGGPMHSFEGC----KAA--RFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1584 --~~gk~l~tf~gh----~sV--aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
...++++.|.+| +.+ .+.+...+++++ +.|.++++||+..|..+.++. .......++.+|-
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta---S~D~t~k~wdlS~g~LLlti~--------fp~si~av~lDpa 228 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA---SEDRTIKLWDLSLGVLLLTIT--------FPSSIKAVALDPA 228 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEe---cCCceEEEEEeccceeeEEEe--------cCCcceeEEEccc
Confidence 124567888877 333 344445688998 999999999999999988876 2355667999999
Q ss_pred CCeEeecc---EEEEcC------------------CCcceeeeccCCC--ce-EEEEecCCCEEEEEeE-----EEecCC
Q 000177 1656 DTMLLWNG---ILWDRR------------------NSVPVHRFDQFTD--HG-GGGFHPAGNEVIINSE-----VWDLRK 1706 (1922)
Q Consensus 1656 G~lLaSgg---rLWDlr------------------tgk~I~kf~gh~~--~V-sVaFSPdG~~LASGSe-----IWDLrT 1706 (1922)
++.+..|+ +||-.. .+..+..|.||.+ .| |++.+-||..|++|++ |||+.+
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 99888777 444322 1234567788887 77 9999999999999993 999999
Q ss_pred CeEEEEEcCC--CceeEEEccCCCEEEEE
Q 000177 1707 FRLLRSVPSL--DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1707 gklL~tl~gH--~~~sVaFSPdG~~LaSg 1733 (1922)
.++++++.-. ..+.+.++|--+.++.+
T Consensus 309 ~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 309 KQCIRTLQTSKGPVTNLQINPLERGIILF 337 (476)
T ss_pred HHHHHHHhhhccccceeEeeccccceecc
Confidence 9999988722 22788887765544443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=155.53 Aligned_cols=201 Identities=19% Similarity=0.250 Sum_probs=158.3
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSS--HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~--lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
+.|...+-..+..+-.|. +.|++|.|.++-. +|++|+.||.|.||++.+..++.++++|.+.|+.| +.+|.+++.
T Consensus 66 ~IYDm~k~~qlg~ll~Ha-gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l--siHPS~KLA 142 (362)
T KOG0294|consen 66 HIYDMRKRKQLGILLSHA-GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL--SIHPSGKLA 142 (362)
T ss_pred EEEeccchhhhcceeccc-cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee--EecCCCceE
Confidence 344455666777888899 9999999999765 99999999999999999999999999999999999 899999999
Q ss_pred EE-ecCCcEEEeccCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1569 LS-SSSQDVHLWNASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1569 aS-SsDgtVkLWDl~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++ |.|+.+++||+-.+....+..+.. .+.+.|+|.|.+|+.+ + ...|-||.+.+.+....+. ....
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~---~-~~~i~i~q~d~A~v~~~i~--------~~~r 210 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS---G-RNKIDIYQLDNASVFREIE--------NPKR 210 (362)
T ss_pred EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE---e-ccEEEEEecccHhHhhhhh--------cccc
Confidence 88 889999999998732222333333 2669999999988886 3 3558999999877666554 1122
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEE--ecCCCEEEEEe-----EEEecCCC
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGF--HPAGNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaF--SPdG~~LASGS-----eIWDLrTg 1707 (1922)
..++.|.. +..+++++ .+||..+..+...|.+|.+.| .+.+ .|.+.+|++.| +|||++..
T Consensus 211 ~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 211 ILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 33355554 44555555 899999999999999999999 5542 57789999998 59999865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-14 Score=163.07 Aligned_cols=233 Identities=15% Similarity=0.225 Sum_probs=175.0
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeee
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~af 1561 (1922)
|+.+|....|+ .+....+++|+.|. +.|..++++. ..++|++.|.+|+.|.++- .++.++.| .+.+..| ..
T Consensus 85 Gs~DG~VkiWn--lsqR~~~~~f~AH~-G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gI--dh 155 (433)
T KOG0268|consen 85 GSCDGEVKIWN--LSQRECIRTFKAHE-GLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGI--DH 155 (433)
T ss_pred cccCceEEEEe--hhhhhhhheeeccc-CceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-ccccccc--cc
Confidence 44555444444 46667788999999 9999999987 7899999999999999854 56677754 3456666 44
Q ss_pred cCCCcEEEEecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1562 SGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1562 SpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
+..+..++||. ..|.|||.+. ..|+.+++. +.++.|+|... .|++| +.|+.|.+||++++++++.+.
T Consensus 156 ~~~~~~FaTcG-e~i~IWD~~R--~~Pv~smswG~Dti~svkfNpvETsILas~---~sDrsIvLyD~R~~~Pl~KVi-- 227 (433)
T KOG0268|consen 156 HRKNSVFATCG-EQIDIWDEQR--DNPVSSMSWGADSISSVKFNPVETSILASC---ASDRSIVLYDLRQASPLKKVI-- 227 (433)
T ss_pred ccccccccccC-ceeeeccccc--CCccceeecCCCceeEEecCCCcchheeee---ccCCceEEEecccCCccceee--
Confidence 44455666643 2489999987 667777653 58999999754 55555 789999999999999888765
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEec
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
.+-..+.++|+|.+-.++++. +.||++.- .++..+.+|...+ ++.|||.|+.+++|| +||..
T Consensus 228 ------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 228 ------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred ------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence 234455699999666666666 88898864 5889999999988 999999999999999 58888
Q ss_pred CCCeEEEEEc---CCCceeEEEccCCCEEEEEEccC
Q 000177 1705 RKFRLLRSVP---SLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1705 rTgklL~tl~---gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
+.++.-..+. .....+|.||.|.++|++|+.+.
T Consensus 302 ~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 302 NHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred CCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 7654332221 12226999999999999996443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=175.09 Aligned_cols=180 Identities=14% Similarity=0.222 Sum_probs=143.5
Q ss_pred CceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQ 1574 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDg 1574 (1922)
+-+.+..|..|. ..|+++.|++ ...+|++||.||+||+||+...+...++.+....|..|+|...+ +.++++ .+.|
T Consensus 122 rnk~l~~f~EH~-Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG 199 (839)
T KOG0269|consen 122 RNKLLTVFNEHE-RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY-GNKFASIHDSG 199 (839)
T ss_pred cchhhhHhhhhc-cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC-CceEEEecCCc
Confidence 345567889999 9999999998 56799999999999999999999999999999999999544443 344445 5688
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcce
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.+++||++.. .++...|..| .|+.|||++.+|+|| +.|++|+|||+.+++. +.++. ...+..
T Consensus 200 ~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhPnr~~lATG---GRDK~vkiWd~t~~~~~~~~tIn--------Tiapv~ 267 (839)
T KOG0269|consen 200 YLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHPNREWLATG---GRDKMVKIWDMTDSRAKPKHTIN--------TIAPVG 267 (839)
T ss_pred eEEEeeccCc-hhHHHHhhcccCceEEEeecCCCceeeec---CCCccEEEEeccCCCccceeEEe--------ecceee
Confidence 9999999873 4566667665 789999999999999 8999999999986543 33332 245666
Q ss_pred EEEEcCCCCeEe-ecc-------EEEEcCCC-cceeeeccCCCce-EEEEec
Q 000177 1649 QIHFSPSDTMLL-WNG-------ILWDRRNS-VPVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1649 vVaFSPdG~lLa-Sgg-------rLWDlrtg-k~I~kf~gh~~~V-sVaFSP 1690 (1922)
.+.|-|...+.+ +++ ++||++.. -|.++|..|...+ .++|-.
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 799999886554 554 99999966 4788999999988 666654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=150.21 Aligned_cols=257 Identities=16% Similarity=0.170 Sum_probs=177.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------C-----ceeeec-cCCCCeeEEEee-----ecCCCcEEEEe-c
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSS-------S-----PLESCT-SHQAPVTLVQSH-----LSGETQLLLSS-S 1572 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg-------k-----~l~tL~-gHss~VtsLq~a-----fSpDG~lLaSS-s 1572 (1922)
...|.|||||..|++-+.|..+.+|++... . ...++. .....|+..+|. -.|+..+++++ .
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456889999999999999999999998421 0 111121 123456666441 23677777775 4
Q ss_pred CCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEEC-CCCceeeeeccccccccC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDI-QTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDl-rTgk~i~tL~d~s~~~~~ 1642 (1922)
+.-|++||.-+ ++...++.+ ..+++|+|||.+|++| ..++|++||+ +.|..............+
T Consensus 132 ~~PIh~wdaft--G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 132 DQPIHLWDAFT--GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred cCceeeeeccc--cccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCCCcchhhhhccccc
Confidence 99999999988 776666654 3789999999999984 6789999999 666543333200000111
Q ss_pred CCCcceEEEEcCCCC-eEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE------EEecCC-Ce
Q 000177 1643 RGHAYSQIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE------VWDLRK-FR 1708 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe------IWDLrT-gk 1708 (1922)
...-+.+++|+|... +++.++ -||.-..+.++..+-+|.+.| .++|+++|+.|.+|.+ .||+|. ..
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 122234499999876 666666 456555677899999999999 9999999999999993 899986 45
Q ss_pred EEEEEcCCCc---ee--EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce-eeee-ccCCceEEE
Q 000177 1709 LLRSVPSLDQ---TT--ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD-IATI-PVDRCVLDF 1781 (1922)
Q Consensus 1709 lL~tl~gH~~---~s--VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~-IaTi-dvkr~I~dL 1781 (1922)
++..+..|.. .. ....|+|++|+++. ....+++||..++-. +..+ ..+..++.+
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-------------------tdG~V~vwdlk~~gn~~sv~~~~sd~vNgv 346 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGD-------------------TDGSVRVWDLKDLGNEVSVTGNYSDTVNGV 346 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccC-------------------CCccEEEEecCCCCCcccccccccccccce
Confidence 5656665543 24 44568999999983 234567777776554 2222 225568899
Q ss_pred EEcCCCceEEEE
Q 000177 1782 ATERTDSFVGLI 1793 (1922)
Q Consensus 1782 a~SPdds~LAVV 1793 (1922)
+++|.=..+|+.
T Consensus 347 slnP~mpilats 358 (406)
T KOG2919|consen 347 SLNPIMPILATS 358 (406)
T ss_pred ecCcccceeeec
Confidence 999986666654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=161.28 Aligned_cols=194 Identities=18% Similarity=0.302 Sum_probs=144.0
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCC-------ceeeeccCCCCeeEEEeeecCCCc-E
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSS-------PLESCTSHQAPVTLVQSHLSGETQ-L 1567 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk-------~l~tL~gHss~VtsLq~afSpDG~-l 1567 (1922)
.++|-.+|+||. ..=+.+.|++.. -.|++|+.|++|.+||+.... ....|.+|...|..+ +|++-.. +
T Consensus 166 ~~~Pdl~L~gH~-~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV--~~h~~h~~l 242 (422)
T KOG0264|consen 166 ECRPDLRLKGHE-KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDV--AWHPLHEDL 242 (422)
T ss_pred cCCCceEEEeec-ccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehh--hccccchhh
Confidence 456667889999 667789999944 489999999999999997543 345679999999999 5666443 3
Q ss_pred EEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccc
Q 000177 1568 LLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNL 1640 (1922)
Q Consensus 1568 LaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~ 1640 (1922)
+.+ |.|+.+.|||+++...++.+...+| +|++|+|- +..|++| +.|++|.+||+|+-+ ++.++.
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~---S~D~tV~LwDlRnL~~~lh~~e------ 313 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG---SADKTVALWDLRNLNKPLHTFE------ 313 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec---cCCCcEEEeechhcccCceecc------
Confidence 344 6799999999995224455555554 89999994 5667777 889999999999743 444553
Q ss_pred cCCCCcceE--EEEcCCCCeEe-ecc-----EEEEcCCC--------------cceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1641 TGRGHAYSQ--IHFSPSDTMLL-WNG-----ILWDRRNS--------------VPVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1641 ~~~gh~~~v--VaFSPdG~lLa-Sgg-----rLWDlrtg--------------k~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
+|...+ +.|+|....++ ++| .+||+..- .++..--||...| .+.|+|+..++++
T Consensus 314 ---~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 314 ---GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIA 390 (422)
T ss_pred ---CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEE
Confidence 566555 99999886655 444 89999742 1234556788888 8999999987665
Q ss_pred Ee------EEEecC
Q 000177 1698 NS------EVWDLR 1705 (1922)
Q Consensus 1698 GS------eIWDLr 1705 (1922)
.- .||.+.
T Consensus 391 SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 391 SVAEDNILQIWQMA 404 (422)
T ss_pred EecCCceEEEeecc
Confidence 44 388875
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=170.64 Aligned_cols=198 Identities=23% Similarity=0.401 Sum_probs=151.4
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CCceeeeccCCCCeeEEEeeecCC-CcEEEEec-CCcEEEeccCCCC
Q 000177 1512 LTCITFLG-DSSHIAVGSHTKELKIFDSNS---SSPLESCTSHQAPVTLVQSHLSGE-TQLLLSSS-SQDVHLWNASSIA 1585 (1922)
Q Consensus 1512 Vt~LaFSP-DG~lLASGS~DGtIkIWDl~t---gk~l~tL~gHss~VtsLq~afSpD-G~lLaSSs-DgtVkLWDl~t~~ 1585 (1922)
+..|+|+. +.++|||++..|.|.+||+.. .+.+..|..|.-.|+++ .|++. ..+|++|+ ||+||+||++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~l--dfh~tep~iliSGSQDg~vK~~DlR~-- 165 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKL--DFHSTEPNILISGSQDGTVKCWDLRS-- 165 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeee--eeccCCccEEEecCCCceEEEEeeec--
Confidence 44567775 677999999999999999987 56677889999999999 66654 35677755 99999999997
Q ss_pred CCcceEecc----ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCcceE--EEEcCCCC
Q 000177 1586 GGPMHSFEG----CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHAYSQ--IHFSPSDT 1657 (1922)
Q Consensus 1586 gk~l~tf~g----h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~ 1657 (1922)
.+.+.+|.+ ++.|.|+| .+.+|+++ ...|.+.+||++... +...+. .|..++ +.|+|++.
T Consensus 166 ~~S~~t~~~nSESiRDV~fsp~~~~~F~s~---~dsG~lqlWDlRqp~r~~~k~~---------AH~GpV~c~nwhPnr~ 233 (839)
T KOG0269|consen 166 KKSKSTFRSNSESIRDVKFSPGYGNKFASI---HDSGYLQLWDLRQPDRCEKKLT---------AHNGPVLCLNWHPNRE 233 (839)
T ss_pred ccccccccccchhhhceeeccCCCceEEEe---cCCceEEEeeccCchhHHHHhh---------cccCceEEEeecCCCc
Confidence 555556544 58899999 57889998 778999999999643 444443 455554 89999999
Q ss_pred eEeecc-----EEEEcCCCc--ceeeeccCCCceEEEEecCCC-EEEEEe-------EEEecCC-CeEEEEEcCCCc--e
Q 000177 1658 MLLWNG-----ILWDRRNSV--PVHRFDQFTDHGGGGFHPAGN-EVIINS-------EVWDLRK-FRLLRSVPSLDQ--T 1719 (1922)
Q Consensus 1658 lLaSgg-----rLWDlrtgk--~I~kf~gh~~~VsVaFSPdG~-~LASGS-------eIWDLrT-gklL~tl~gH~~--~ 1719 (1922)
+|+||| +|||..+++ +++++........+.|-|... .|++++ .|||++. +-+..++..|.. +
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 999999 999998765 455554332222899999865 566666 5999975 456677878876 6
Q ss_pred eEEEcc
Q 000177 1720 TITFNA 1725 (1922)
Q Consensus 1720 sVaFSP 1725 (1922)
.++|-.
T Consensus 314 ~i~W~~ 319 (839)
T KOG0269|consen 314 GIAWDS 319 (839)
T ss_pred ceeccC
Confidence 777765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=154.26 Aligned_cols=272 Identities=17% Similarity=0.227 Sum_probs=176.1
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC---------ceeeeccCCCCeeEEEeeecCCCcEEEEec-CCc
Q 000177 1507 DAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSS---------PLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQD 1575 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk---------~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dgt 1575 (1922)
|...+|..+.|.++.. +|+||+.|..|+||-++.+. .+..+..|+..|++| .|+|+|.+|++|. ++.
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~v--Rf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVV--RFSPDGELLASGGDGGE 88 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEE--EEcCCcCeeeecCCCce
Confidence 3335899999999776 99999999999999986432 234568999999999 8999999999965 789
Q ss_pred EEEeccCCC--------------CCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1576 VHLWNASSI--------------AGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1576 VkLWDl~t~--------------~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
|.+|-.... .......+.+| ..++|+|++.+++++ +.|+++++||+..|+....+.
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~---s~dns~~l~Dv~~G~l~~~~~--- 162 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG---SVDNSVRLWDVHAGQLLAILD--- 162 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee---eccceEEEEEeccceeEeecc---
Confidence 999987610 01112233333 679999999999999 889999999999999988875
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCccee---------------------eeccCCC--ce-EEEE
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVH---------------------RFDQFTD--HG-GGGF 1688 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~---------------------kf~gh~~--~V-sVaF 1688 (1922)
.+.|...-++|.|-++++++-+ +.+.+...+.++ -|...+. .. .++|
T Consensus 163 ----dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 163 ----DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred ----ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 2345555599999999999766 344433322211 1111111 11 6799
Q ss_pred ecCCCEEEEEeEEEecCCCe---------------EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccc
Q 000177 1689 HPAGNEVIINSEVWDLRKFR---------------LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVK 1751 (1922)
Q Consensus 1689 SPdG~~LASGSeIWDLrTgk---------------lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~k 1751 (1922)
+|+|.++++...++....+- +...+++... ..+.|+|- .|--..-....+... .+.++.
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV---y~elrp~~~~~~~~~-lpyrlv 314 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV---YYELRPLSSEKFLFV-LPYRLV 314 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee---EEEeccccccccccc-cccceE
Confidence 99999999998666554222 1222222222 23334331 111100111111000 011211
Q ss_pred cC--CcceEEEEecCCCceeeeecc--CCceEEEEEcCCCceEEEEe
Q 000177 1752 HP--LFAAFRTVDAINYSDIATIPV--DRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1752 sp--~~ssFrt~Da~dys~IaTidv--kr~I~dLa~SPdds~LAVVe 1794 (1922)
.. ...++.++|...-.+++.++- -..|.|++|+++|.++++..
T Consensus 315 faiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 315 FAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred EEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec
Confidence 11 234566777777777776654 34599999999999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=154.93 Aligned_cols=233 Identities=15% Similarity=0.198 Sum_probs=165.7
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecC--CC
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDS--SHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSG--ET 1565 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG--~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSp--DG 1565 (1922)
......+..+.+-|. +.|++++|+|.. +++++|+.-|+|-+||+.+.+ -+..+..|..+|.+| .|+| ..
T Consensus 172 ~l~~~~~~~v~kv~~-~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l--~F~P~n~s 248 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTD-RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGL--KFSPANTS 248 (498)
T ss_pred ccccceecceeEecc-cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccce--EecCCChh
Confidence 344556667777888 999999999954 589999999999999995332 345678999999999 6666 45
Q ss_pred cEEEEecCCcEEEeccCCCCCCcceEe-------c----------------------------------------cceeE
Q 000177 1566 QLLLSSSSQDVHLWNASSIAGGPMHSF-------E----------------------------------------GCKAA 1598 (1922)
Q Consensus 1566 ~lLaSSsDgtVkLWDl~t~~gk~l~tf-------~----------------------------------------gh~sV 1598 (1922)
+++.+|.||+|++-|++......+.+. . .++++
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 677778899999998875211111111 0 02578
Q ss_pred EEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcC---
Q 000177 1599 RFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRR--- 1669 (1922)
Q Consensus 1599 aFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlr--- 1669 (1922)
+++|. ..+|+|+ +.|++++|||++.-..... |.+....|.+.++.+.|||++-.|++.+ +|||..
T Consensus 329 ~~NP~~p~~laT~---s~D~T~kIWD~R~l~~K~s---p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 329 ALNPVCPWFLATA---SLDQTAKIWDLRQLRGKAS---PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ecCCCCchheeec---ccCcceeeeehhhhcCCCC---cceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc
Confidence 99995 5677887 8999999999986433221 1112222556667799999998888777 999984
Q ss_pred -CCcceeeecc---CCCce---EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc----eeEEEccCCCEEEEE
Q 000177 1670 -NSVPVHRFDQ---FTDHG---GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ----TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1670 -tgk~I~kf~g---h~~~V---sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~----~sVaFSPdG~~LaSg 1733 (1922)
.-.+..++.. +..++ ...|+|+..+|++|- +|+|-..++++..+..... .-..|+|-+..+++|
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence 2223333321 11233 679999999999998 5999988888877654433 467899999988887
Q ss_pred Ec
Q 000177 1734 LR 1735 (1922)
Q Consensus 1734 s~ 1735 (1922)
+.
T Consensus 483 ~~ 484 (498)
T KOG4328|consen 483 GN 484 (498)
T ss_pred CC
Confidence 53
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=148.20 Aligned_cols=256 Identities=16% Similarity=0.228 Sum_probs=178.4
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHL 1578 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkL 1578 (1922)
+...+|+++...-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.++ ..-.+|.+|..+.|..|.+
T Consensus 236 k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L--~~lr~GtllSGgKDRki~~ 312 (626)
T KOG2106|consen 236 KRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSL--CMLRDGTLLSGGKDRKIIL 312 (626)
T ss_pred EEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEE--EEecCccEeecCccceEEe
Confidence 344566776657799999999987 7899999999999998888777777999999999 7788999888567999999
Q ss_pred eccCCCCCCcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1579 WNASSIAGGPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
||-. -+.++..+ .++.++=.. +. |+.| +..+.|..=.++++-.+..+ +++...+-++.
T Consensus 313 Wd~~---y~k~r~~elPe~~G~iRtv~e~~-~d-i~vG---TtrN~iL~Gt~~~~f~~~v~--------gh~delwgla~ 376 (626)
T KOG2106|consen 313 WDDN---YRKLRETELPEQFGPIRTVAEGK-GD-ILVG---TTRNFILQGTLENGFTLTVQ--------GHGDELWGLAT 376 (626)
T ss_pred cccc---ccccccccCchhcCCeeEEecCC-Cc-EEEe---eccceEEEeeecCCceEEEE--------ecccceeeEEc
Confidence 9933 22222221 134333222 22 5555 44556655555554443333 24445555999
Q ss_pred cCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE-----EEecCCCeEEEEEcCCCc-eeE
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE-----VWDLRKFRLLRSVPSLDQ-TTI 1721 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe-----IWDLrTgklL~tl~gH~~-~sV 1721 (1922)
+|+.+.+++++ +||+ ..+++.+..-.....++.|||.| .|+.|+- +.|..+..++..-....+ ++|
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v 453 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVV 453 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEE
Confidence 99999999999 8999 55666655444445599999999 8888882 668887555543333222 899
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEE-ecCCCceeeeeccCCceEEEEEcCCCceEEEE
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV-DAINYSDIATIPVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~-Da~dys~IaTidvkr~I~dLa~SPdds~LAVV 1793 (1922)
+|+|+|.+|+.++.++..-+ +++- +...|+.+..... .+|..+.|+++++++...
T Consensus 454 ~ysp~G~~lAvgs~d~~iyi----------------y~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYI----------------YRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEcCCCCEEEEecCCCeEEE----------------EEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEec
Confidence 99999999999976653222 1111 1234554444445 789999999999987754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-13 Score=177.76 Aligned_cols=217 Identities=18% Similarity=0.302 Sum_probs=163.4
Q ss_pred CCEEEEEEcCCCCE----EEEEeCCCcEEEEECCC---C---CceeeeccCCCCeeEEEeeecCCCc-EEEEe-cCCcEE
Q 000177 1510 ALLTCITFLGDSSH----IAVGSHTKELKIFDSNS---S---SPLESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQDVH 1577 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~l----LASGS~DGtIkIWDl~t---g---k~l~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgtVk 1577 (1922)
..++.++|.+.|.. |+.|..||.|.+||... + ..+.++..|++.|..+ .|++... +|++| +||.|.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gL--DfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGL--DFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeee--eccccCCceeeccCCCCcEE
Confidence 46889999987765 99999999999999865 2 2356778899999999 7888755 88886 599999
Q ss_pred EeccCCCCCCcce-----EeccceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1578 LWNASSIAGGPMH-----SFEGCKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1578 LWDl~t~~gk~l~-----tf~gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|||+... ..+.. ....+.+++|+.. ...|+++ +.++++.|||++..+.+..+.+.. ......++.
T Consensus 143 iWDlnn~-~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~---s~sg~~~iWDlr~~~pii~ls~~~-----~~~~~S~l~ 213 (1049)
T KOG0307|consen 143 IWDLNKP-ETPFTPGSQAPPSEIKCLSWNRKVSHILASG---SPSGRAVIWDLRKKKPIIKLSDTP-----GRMHCSVLA 213 (1049)
T ss_pred EeccCCc-CCCCCCCCCCCcccceEeccchhhhHHhhcc---CCCCCceeccccCCCcccccccCC-----Cccceeeee
Confidence 9999872 12211 1224689999985 5566776 788999999999988777775211 012233599
Q ss_pred EcCCCC-eEeecc--------EEEEcCCC-cceeeeccCCCce-EEEEecCC-CEEEEEeE-----EEecCCCeEEEEEc
Q 000177 1652 FSPSDT-MLLWNG--------ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAG-NEVIINSE-----VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1652 FSPdG~-lLaSgg--------rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG-~~LASGSe-----IWDLrTgklL~tl~ 1714 (1922)
|+|++- .|++++ .+||+|.. .+++.+.+|...+ ++.|++.+ .+++++++ +||..|++.+..++
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 999983 233222 89999965 5889999999888 99999988 67777774 99999999999999
Q ss_pred CCCc--eeEEEccCCCEEE-EEEccC
Q 000177 1715 SLDQ--TTITFNARGDVIY-AILRRN 1737 (1922)
Q Consensus 1715 gH~~--~sVaFSPdG~~La-Sgs~~d 1737 (1922)
...+ ..|.|+|...-++ +++.+.
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheecc
Confidence 7555 5899999887444 443333
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=161.32 Aligned_cols=176 Identities=18% Similarity=0.242 Sum_probs=152.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee---ccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC---TSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL---~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~ 1585 (1922)
..+++|+.++.|++.+.|+..|+|-+||+++|-...+| ..|..+|+.+ +...-++++++ |.+|.+++||...
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl--a~D~~n~~~vsa~~~Gilkfw~f~~-- 524 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL--AVDGTNRLLVSAGADGILKFWDFKK-- 524 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE--EecCCCceEEEccCcceEEEEecCC--
Confidence 67999999999999999999999999999999988888 5899999999 67777788888 6799999999987
Q ss_pred CCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1586 GGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1586 gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
..++.++.- ..++..+.....++.+ ..|-.|+++|+.|.+.+..|. +++...+.++|||||++|++.
T Consensus 525 k~l~~~l~l~~~~~~iv~hr~s~l~a~~---~ddf~I~vvD~~t~kvvR~f~-------gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 525 KVLKKSLRLGSSITGIVYHRVSDLLAIA---LDDFSIRVVDVVTRKVVREFW-------GHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred cceeeeeccCCCcceeeeeehhhhhhhh---cCceeEEEEEchhhhhhHHhh-------ccccceeeeEeCCCCcEEEEe
Confidence 555565542 4778888888888887 788999999999999888885 334445559999999999988
Q ss_pred c-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1663 G-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+ ++||+.++.+|-.+.-...++++.|+|+|.+||+..
T Consensus 595 smD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred ecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEE
Confidence 7 999999999999887777777999999999999998
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=152.84 Aligned_cols=209 Identities=19% Similarity=0.292 Sum_probs=156.8
Q ss_pred EecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCC--CcEEEEec
Q 000177 1503 TCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGE--TQLLLSSS 1572 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpD--G~lLaSSs 1572 (1922)
.+.||+ ++|..++|+| +.+.||+||.|.+|+||.+..+ +++..+.||...|..| .|+|. +-++.+|.
T Consensus 76 ~v~GHt-~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V--~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHT-APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLV--QWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCcc-ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEE--eecccchhhHhhccC
Confidence 467999 9999999999 7789999999999999998654 4467789999999999 55664 33444478
Q ss_pred CCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
|.+|.+||+.+ +..+.++.. ++++.|+.+|.+|+++ +.|+.|+|||.++++.+..-. ...|+....
T Consensus 153 Dn~v~iWnv~t--geali~l~hpd~i~S~sfn~dGs~l~Tt---ckDKkvRv~dpr~~~~v~e~~------~heG~k~~R 221 (472)
T KOG0303|consen 153 DNTVSIWNVGT--GEALITLDHPDMVYSMSFNRDGSLLCTT---CKDKKVRVIDPRRGTVVSEGV------AHEGAKPAR 221 (472)
T ss_pred CceEEEEeccC--CceeeecCCCCeEEEEEeccCCceeeee---cccceeEEEcCCCCcEeeecc------cccCCCcce
Confidence 99999999998 776666652 3889999999999999 899999999999999877653 123555556
Q ss_pred EEEcCCCCeEeecc---------EEEEcCCCc---ceeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCe---
Q 000177 1650 IHFSPSDTMLLWNG---------ILWDRRNSV---PVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFR--- 1708 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg---------rLWDlrtgk---~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgk--- 1708 (1922)
+-|-.+|. +++.| -|||..+-. ....++..++..--.|.|+.+.|..++ +.|.+....
T Consensus 222 aifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~ 300 (472)
T KOG0303|consen 222 AIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFV 300 (472)
T ss_pred eEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCcee
Confidence 88999999 55555 699977543 244555555544678899999888888 366665433
Q ss_pred -EEEEEcCCC-ceeEEEccC
Q 000177 1709 -LLRSVPSLD-QTTITFNAR 1726 (1922)
Q Consensus 1709 -lL~tl~gH~-~~sVaFSPd 1726 (1922)
-+.++.... +..+.|-|.
T Consensus 301 hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 301 HYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEecccccCCcccccccccc
Confidence 344444332 256666664
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=156.58 Aligned_cols=201 Identities=18% Similarity=0.196 Sum_probs=153.7
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCCceeeeccCC
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN---------SSSPLESCTSHQ 1551 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~---------tgk~l~tL~gHs 1551 (1922)
.|+..++.+.|. .+.++.+.++.+|- ..|+|+.|+.||.+|+|||+||.|.+|.+. +-+++..|..|+
T Consensus 98 ag~i~g~lYlWe--lssG~LL~v~~aHY-Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 98 AGTISGNLYLWE--LSSGILLNVLSAHY-QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred eecccCcEEEEE--eccccHHHHHHhhc-cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 344555555544 58888899999999 999999999999999999999999999873 346778999999
Q ss_pred CCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1552 APVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
-+|++++..+.+....|+| |.|.++++||+.. +..+.++.- .++++..|-++.++.| +.+|.|.+.++.+.
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~--g~LLlti~fp~si~av~lDpae~~~yiG---t~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSL--GVLLLTITFPSSIKAVALDPAERVVYIG---TEEGKIFQNLLFKL 249 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEecc--ceeeEEEecCCcceeEEEcccccEEEec---CCcceEEeeehhcC
Confidence 9999997666644455555 6799999999998 777766542 5899999999999998 88999999887643
Q ss_pred c--ee------eeeccccccccCCCCc----ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEe
Q 000177 1628 Q--LE------AKLSDTSVNLTGRGHA----YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFH 1689 (1922)
Q Consensus 1628 k--~i------~tL~d~s~~~~~~gh~----~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFS 1689 (1922)
. .. ..+. ..-.....||. +.+++++-||.+|++|+ .+||+.+.++++++....+.| .+.+.
T Consensus 250 ~~~~~~v~~k~~~~~-~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEE-NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred Ccccccccccccccc-cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEee
Confidence 3 11 1111 01111122444 45699999999999998 899999999999887655666 66665
Q ss_pred c
Q 000177 1690 P 1690 (1922)
Q Consensus 1690 P 1690 (1922)
|
T Consensus 329 ~ 329 (476)
T KOG0646|consen 329 P 329 (476)
T ss_pred c
Confidence 5
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=160.83 Aligned_cols=221 Identities=12% Similarity=0.195 Sum_probs=172.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
.+|.|++.||+|++||+|..-|+++||++..-.....+.+|...|.|+.+++-. ..++|+++ .|.-|+|||+.. ...
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-ny~ 538 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-NYD 538 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-ccc
Confidence 579999999999999999999999999999988888999999999999554322 24577774 599999999975 255
Q ss_pred cceEeccc----eeEEEcCCC--CEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1588 PMHSFEGC----KAARFSNSG--NLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1588 ~l~tf~gh----~sVaFSPDG--~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
++.++.+| +++.|.-+| ..++++ +.|+.|. |+... ......|... .+.........++..|+-++++
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~Misc---GADksim-Fr~~qk~~~g~~f~r~--t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISC---GADKSIM-FRVNQKASSGRLFPRH--TQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEec---cCchhhh-eehhccccCceecccc--ccccccceEEEeeeCCCcceEE
Confidence 67888876 789998876 678888 7888765 44332 1111222200 0000111223389999999999
Q ss_pred ecc-----EEEEcCCCcceeeeccCCC----ceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEc
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFTD----HGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFN 1724 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~~----~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFS 1724 (1922)
+++ +|||+.+|+.++.|++..+ .|.+...|.|.||++.. -++|.-+++++.+..||.. +.+.|.
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 988 9999999999999987543 34899999999999987 3999999999999999987 899999
Q ss_pred cCCCEEEEEEccC
Q 000177 1725 ARGDVIYAILRRN 1737 (1922)
Q Consensus 1725 PdG~~LaSgs~~d 1737 (1922)
+|.++|++++.+.
T Consensus 693 nDCkHlISvsgDg 705 (1080)
T KOG1408|consen 693 NDCKHLISVSGDG 705 (1080)
T ss_pred ccchhheeecCCc
Confidence 9999999885544
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-12 Score=143.03 Aligned_cols=228 Identities=14% Similarity=0.227 Sum_probs=162.8
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEe
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLW 1579 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLW 1579 (1922)
.+|. +-|.|+.|.+-|+.+|||+.|++|+|||..+. .+...+++|.+.|..|.|+...-|+.+++++ |+++.||
T Consensus 10 s~h~-DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHK-DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCc-ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4798 99999999999999999999999999997543 3556779999999999887666799999965 9999999
Q ss_pred ccCCCCCC-------cceEec----cceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceee------eeccccccc
Q 000177 1580 NASSIAGG-------PMHSFE----GCKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEA------KLSDTSVNL 1640 (1922)
Q Consensus 1580 Dl~t~~gk-------~l~tf~----gh~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~------tL~d~s~~~ 1640 (1922)
.=.....+ ...++. .++.+.|.|. |-+++++ +.||+++||+.-..-.+. .+.. ....
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~---~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~-~~~p 164 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA---SADGILRIYEAPDPMNLSQWTLQHEIQN-VIDP 164 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe---ccCcEEEEEecCCccccccchhhhhhhh-ccCC
Confidence 76321011 112222 2578999994 7789998 899999999875432222 2210 0001
Q ss_pred cCC-CCcceEEEEcCCC---CeEeecc----------EEEEcCCC----cceeeeccCCCce-EEEEecCC----CEEEE
Q 000177 1641 TGR-GHAYSQIHFSPSD---TMLLWNG----------ILWDRRNS----VPVHRFDQFTDHG-GGGFHPAG----NEVII 1697 (1922)
Q Consensus 1641 ~~~-gh~~~vVaFSPdG---~lLaSgg----------rLWDlrtg----k~I~kf~gh~~~V-sVaFSPdG----~~LAS 1697 (1922)
.+. .....++.|+|.. ++|+.++ +||....+ ..+.++.+|...| .++|.|+- ..||+
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 111 2234458999754 5677655 78876643 2466778899999 99999983 46788
Q ss_pred Ee----EEEecCCC--------------------eEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1698 NS----EVWDLRKF--------------------RLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1698 GS----eIWDLrTg--------------------klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
++ +||++... +.+..+.+|.. +.+.||-.|.+|.++..+.
T Consensus 245 A~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 245 ATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred eecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 87 49988731 23344556764 8999999999999885444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-10 Score=130.05 Aligned_cols=275 Identities=21% Similarity=0.337 Sum_probs=197.6
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEE-ecCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSH-TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLS-SSSQ 1574 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaS-SsDg 1574 (1922)
+.....+..|. ..|.+++|+|++.++++++. |+.+++|++..+..+..+.+|...|.++ .|+|++. ++++ +.|+
T Consensus 145 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 145 GKLIRTLEGHS-ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL--AFSPDGGLLIASGSSDG 221 (466)
T ss_pred CeEEEEEecCc-ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE--EEcCCcceEEEEecCCC
Confidence 67778888999 99999999999999999986 9999999999988999999999999999 7789987 5666 5699
Q ss_pred cEEEeccCCCCCCcce-EeccceeE---EEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeeccccccccCCCCcceE
Q 000177 1575 DVHLWNASSIAGGPMH-SFEGCKAA---RFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~-tf~gh~sV---aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~v 1649 (1922)
+|++||... +..+. .+.+|... .|+|++.+++++ +.|+.+++||+..... ...+. .+......
T Consensus 222 ~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~ 289 (466)
T COG2319 222 TIRLWDLST--GKLLRSTLSGHSDSVVSSFSPDGSLLASG---SSDGTIRLWDLRSSSSLLRTLS-------GHSSSVLS 289 (466)
T ss_pred cEEEEECCC--CcEEeeecCCCCcceeEeECCCCCEEEEe---cCCCcEEEeeecCCCcEEEEEe-------cCCccEEE
Confidence 999998875 66666 57776443 799999888877 8999999999997665 33221 12334455
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeec--cCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcC
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD--QFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~--gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~g 1715 (1922)
+.|+|++..+++++ .+||..+........ .|...+ .+.|.+++..++.+. .+|++...........
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 369 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC
Confidence 89999888888754 899999887666665 666655 777744435666662 3799987774444444
Q ss_pred CC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEE
Q 000177 1716 LD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1716 H~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVV 1793 (1922)
.. ...+.|++ ...++.... ....+..|+......+...... ..+....+++++..++..
T Consensus 370 ~~~~~~~~~~~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (466)
T COG2319 370 HSNVLSVSFSP-DGRVVSSGS------------------TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430 (466)
T ss_pred CceEEEEEECC-CCCEEEEec------------------CCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence 44 36888888 533333111 1223445555444444444444 678888888888877642
Q ss_pred ecCCCCCccceEEEEEecC
Q 000177 1794 TMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1794 e~dds~d~dSsVRLyEVGr 1812 (1922)
..+..+++|.+..
T Consensus 431 ------~~~~~~~~~~~~~ 443 (466)
T COG2319 431 ------SSDNTIRLWDLKT 443 (466)
T ss_pred ------cCCCcEEEEeccC
Confidence 2335678887654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-13 Score=168.07 Aligned_cols=295 Identities=16% Similarity=0.232 Sum_probs=199.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCCCCCCcccCCCCCCC--CCCCCcceeeccccccee--cccCCccccccceeee
Q 000177 1420 ITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRS--LDAPSNVTARLGTREFKS--TYSGVHRNRRDRQFVY 1495 (1922)
Q Consensus 1420 ~~LdsIVtqyLr~QH~qC~~PVtt~PpfSLl~pH~CPePk~~--lsAP~N~aaRl~sr~l~~--~~Gg~~g~r~dr~fi~ 1495 (1922)
+||-+-.+|.|......|.+.+. ++..+--+|.-.++.+. +..+.+...+.+...... +|.. .+.-. ++
T Consensus 105 pTlLgtg~qsLl~r~k~~~~~~~--~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~at~~~----akPgt-mv 177 (1113)
T KOG0644|consen 105 PTLLGTGRQSLLRRAKDIRHTVW--KGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCATFSI----AKPGT-MV 177 (1113)
T ss_pred cchhcchhHHHHhhhhhcccccc--cccccccccccCcccccceeccCCcchhhhhcCcccccceeee----cCcHH-HH
Confidence 57888888888888777876532 33334445554444332 223333333333222110 0000 00011 35
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDg 1574 (1922)
...+.++.|.+|. ..|+|+.|...|.+|+||+.|..||||..+++.++.++.||.+.|+.+ +.+.++.++++ |.|.
T Consensus 178 qkmk~ikrLlgH~-naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdl--avs~~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHR-NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDL--AVSSNNTMIAAASNDK 254 (1113)
T ss_pred HHHHHHHHHHhhh-hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchh--ccchhhhhhhhcccCc
Confidence 5666777889999 999999999999999999999999999999999999999999999999 77778778887 4599
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee--------------ec-c
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK--------------LS-D 1635 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t--------------L~-d 1635 (1922)
.|++|-+.+ +.++..+.+| ++++|+|-. +. +.||++++||.+-.-.+.. +. .
T Consensus 255 vIrvWrl~~--~~pvsvLrghtgavtaiafsP~~----ss---s~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 255 VIRVWRLPD--GAPVSVLRGHTGAVTAIAFSPRA----SS---SDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred eEEEEecCC--CchHHHHhccccceeeeccCccc----cC---CCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence 999999998 8888888876 689999954 44 7899999999881111000 00 0
Q ss_pred c--------cccccCCCCcceEEEEcCCCCeEeecc----------------EEEEcCCCcceeeeccCCCce-EEEEec
Q 000177 1636 T--------SVNLTGRGHAYSQIHFSPSDTMLLWNG----------------ILWDRRNSVPVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1636 ~--------s~~~~~~gh~~~vVaFSPdG~lLaSgg----------------rLWDlrtgk~I~kf~gh~~~V-sVaFSP 1690 (1922)
. .-......|...+++|...+-.+++.. .+|++-+|..+|...+|...+ .+.|||
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred ccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 0 000111233333333333332222211 799999999999999999988 789999
Q ss_pred CCCEEE-EEe-----EEEecCCCeEEEEEc-CCCc-eeEEEccCCCEEEEE
Q 000177 1691 AGNEVI-INS-----EVWDLRKFRLLRSVP-SLDQ-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1691 dG~~LA-SGS-----eIWDLrTgklL~tl~-gH~~-~sVaFSPdG~~LaSg 1733 (1922)
-...++ +++ -|||+-.|.+++.+. +|.. ...+||++|+.++..
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 765554 333 299999888777654 4544 678899999887754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=152.02 Aligned_cols=203 Identities=20% Similarity=0.284 Sum_probs=159.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l 1589 (1922)
+|.|+.|| .++++|+..+.|+|||+...-+.+.+++|.+.|+++ .++....+|++.+ .|.|.|..+.+ +...
T Consensus 84 Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v--~YN~~DeyiAsvs~gGdiiih~~~t--~~~t 156 (673)
T KOG4378|consen 84 CVACASQS---LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYV--DYNNTDEYIASVSDGGDIIIHGTKT--KQKT 156 (673)
T ss_pred HHhhhhcc---eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEE--EecCCcceeEEeccCCcEEEEeccc--Cccc
Confidence 34455554 899999999999999999777788889999999999 7777888999965 67899999987 4444
Q ss_pred eEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCe-Eee
Q 000177 1590 HSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTM-LLW 1661 (1922)
Q Consensus 1590 ~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~l-LaS 1661 (1922)
.+|.. ++-+.|+|..+++++. .+.+|.|.+||+.....+..+. ..|..++ ++|+|.... |++
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~--asd~G~VtlwDv~g~sp~~~~~--------~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSI--ASDKGAVTLWDVQGMSPIFHAS--------EAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEe--eccCCeEEEEeccCCCcccchh--------hhccCCcCcceecCCccceEEE
Confidence 44532 3678999987766554 3889999999999888777665 4576666 999998865 456
Q ss_pred cc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe---E--EEecCCC-eEEEEEcCCCc--eeEEEccCCC
Q 000177 1662 NG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS---E--VWDLRKF-RLLRSVPSLDQ--TTITFNARGD 1728 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS---e--IWDLrTg-klL~tl~gH~~--~sVaFSPdG~ 1728 (1922)
.| .+||++..+...++.-...-..++|+++|.+|+.|+ + .||+|.. .++.++..|+. ++|+|-|.-
T Consensus 227 VG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~- 305 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP- 305 (673)
T ss_pred ecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc-
Confidence 66 799999877777665444444899999999999998 3 7899864 57888888877 899998865
Q ss_pred EEE
Q 000177 1729 VIY 1731 (1922)
Q Consensus 1729 ~La 1731 (1922)
.++
T Consensus 306 tvl 308 (673)
T KOG4378|consen 306 TVL 308 (673)
T ss_pred eee
Confidence 444
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=142.30 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=144.7
Q ss_pred eeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCc--eeeeccCCCCeeEEEeeecCCCcEEEE-ecC
Q 000177 1499 RPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSGETQLLLS-SSS 1573 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSpDG~lLaS-SsD 1573 (1922)
+++.+|+||. ++|+.++|.. -|.+||++++||.|.||.-..|.. ...+..|...|++|+|+++.-|-+|++ |+|
T Consensus 47 ~ll~~L~Gh~-GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHS-GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCC-CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 5678999999 9999999987 899999999999999999888754 345688999999998877777888888 679
Q ss_pred CcEEEeccCCCCCCcc-eEe----ccceeEEEcCC---C-----------CEEEEeecCCCCCeEEEEECCCCce--eee
Q 000177 1574 QDVHLWNASSIAGGPM-HSF----EGCKAARFSNS---G-----------NLFAALPTETSDRGILLYDIQTYQL--EAK 1632 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l-~tf----~gh~sVaFSPD---G-----------~~LaSgS~~S~DgtIrIWDlrTgk~--i~t 1632 (1922)
|+|.|.+++...+-.. ... .|+++++|.|- | ++|++| +.|+.|+||+...++- ..+
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg---GcDn~VkiW~~~~~~w~~e~~ 202 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG---GCDNLVKIWKFDSDSWKLERT 202 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc---CCccceeeeecCCcchhhhhh
Confidence 9999999986311111 111 24689999985 4 679998 8999999999987632 222
Q ss_pred eccccccccCCCCcceE--EEEcCCC----CeEeecc-----EEEEcCCCc---ceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1633 LSDTSVNLTGRGHAYSQ--IHFSPSD----TMLLWNG-----ILWDRRNSV---PVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~v--VaFSPdG----~lLaSgg-----rLWDlrtgk---~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
| .+|...+ ++|.|.- .++++++ .||..+.-. ....+..+...+ .+.||+.|+.|+.
T Consensus 203 l---------~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 203 L---------EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred h---------hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEE
Confidence 3 4788887 9999975 5678887 788876321 112223345566 9999999999988
Q ss_pred Ee
Q 000177 1698 NS 1699 (1922)
Q Consensus 1698 GS 1699 (1922)
++
T Consensus 274 s~ 275 (299)
T KOG1332|consen 274 SG 275 (299)
T ss_pred ec
Confidence 76
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-12 Score=151.49 Aligned_cols=195 Identities=22% Similarity=0.291 Sum_probs=157.5
Q ss_pred cccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEE
Q 000177 1480 TYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQ 1558 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq 1558 (1922)
+.||..+....|.+ ..-...+.+++|+ +.|+|+.++....+||+++..|.|.|..+.++....+|.-. ...|.-+
T Consensus 95 ~sgG~~~~Vkiwdl--~~kl~hr~lkdh~-stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll- 170 (673)
T KOG4378|consen 95 ISGGQSGCVKIWDL--RAKLIHRFLKDHQ-STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL- 170 (673)
T ss_pred eccCcCceeeehhh--HHHHHhhhccCCc-ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe-
Confidence 44555555555554 3455567789999 99999999999999999999999999999999887777533 4556688
Q ss_pred eeecCCCcEEEE--ecCCcEEEeccCCCCCCcceEecc-c----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCcee
Q 000177 1559 SHLSGETQLLLS--SSSQDVHLWNASSIAGGPMHSFEG-C----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1559 ~afSpDG~lLaS--SsDgtVkLWDl~t~~gk~l~tf~g-h----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
.|++..+++++ |++|.|.|||+.. ..+++.+.. | ..|+|+|. ...|++. +.|+.|.+||++..+..
T Consensus 171 -~ys~skr~lL~~asd~G~VtlwDv~g--~sp~~~~~~~HsAP~~gicfspsne~l~vsV---G~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 171 -RYSPSKRFLLSIASDKGAVTLWDVQG--MSPIFHASEAHSAPCRGICFSPSNEALLVSV---GYDKKINIYDIRSQAST 244 (673)
T ss_pred -ecccccceeeEeeccCCeEEEEeccC--CCcccchhhhccCCcCcceecCCccceEEEe---cccceEEEeeccccccc
Confidence 78888887766 5799999999987 667777654 3 67999995 5677777 89999999999987777
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAG 1692 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG 1692 (1922)
.++. ..|+-..++|+++|.+|+.+. ..||+|.. .++..+..|...| +++|-|.-
T Consensus 245 ~~l~--------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 245 DRLT--------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceee--------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 7665 357777799999999999877 89999964 5899999999888 99998764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-12 Score=148.78 Aligned_cols=226 Identities=16% Similarity=0.262 Sum_probs=160.9
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--------C--------CCceeeeccCCCCeeEEEeeecCC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN--------S--------SSPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~--------t--------gk~l~tL~gHss~VtsLq~afSpD 1564 (1922)
..+|..|. ..|++|.|+|+|.+|++|+.+|.|.+|-.. + ....+.+.+|...|+.+ +|+|+
T Consensus 58 ~s~Ls~H~-~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL--~Ws~d 134 (434)
T KOG1009|consen 58 LSSLSRHT-RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDL--AWSPD 134 (434)
T ss_pred eecccCCc-ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhh--hccCC
Confidence 45677899 999999999999999999999999999865 2 12235668999999999 88999
Q ss_pred CcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec-cccc
Q 000177 1565 TQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS-DTSV 1638 (1922)
Q Consensus 1565 G~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~-d~s~ 1638 (1922)
+.++++++ |.++++||+.. ++.+..+.+| ..++|.|-++++++- +.|...+++.+...+.++... +...
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~--G~l~~~~~dh~~yvqgvawDpl~qyv~s~---s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHA--GQLLAILDDHEHYVQGVAWDPLNQYVASK---SSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred CceeeeeeccceEEEEEecc--ceeEeeccccccccceeecchhhhhhhhh---ccCcccceeeeeeeeeeeeeeeeEee
Confidence 99999965 99999999998 8888888775 679999999999987 777777777776555443332 0000
Q ss_pred c-----------ccCCCCcce----EEEEcCCCCeEeeccE--------------EEEcCC-CcceeeeccCCCce-EEE
Q 000177 1639 N-----------LTGRGHAYS----QIHFSPSDTMLLWNGI--------------LWDRRN-SVPVHRFDQFTDHG-GGG 1687 (1922)
Q Consensus 1639 ~-----------~~~~gh~~~----vVaFSPdG~lLaSggr--------------LWDlrt-gk~I~kf~gh~~~V-sVa 1687 (1922)
. ..++..+.. .++|+|+|.++++... +|+-.. .+|+..+....... .+.
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence 0 000111111 1889999999997663 333221 23444554444433 444
Q ss_pred Eec------------------CCCEEEEEeE----EEecCCCeEEEEEcCC---CceeEEEccCCCEEEEEE
Q 000177 1688 FHP------------------AGNEVIINSE----VWDLRKFRLLRSVPSL---DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1688 FSP------------------dG~~LASGSe----IWDLrTgklL~tl~gH---~~~sVaFSPdG~~LaSgs 1734 (1922)
|+| -+..++++++ |||.++-.++..+.+. ..+.++|+++|.+++..+
T Consensus 290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred eeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec
Confidence 443 2345666663 8898887777666533 338999999999999875
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=142.30 Aligned_cols=242 Identities=11% Similarity=0.153 Sum_probs=158.7
Q ss_pred eeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCC---cceE-ec-cc-eeEEEcCCCCEEEEeecCCCCC
Q 000177 1545 ESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGG---PMHS-FE-GC-KAARFSNSGNLFAALPTETSDR 1617 (1922)
Q Consensus 1545 ~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk---~l~t-f~-gh-~sVaFSPDG~~LaSgS~~S~Dg 1617 (1922)
.++++|...|+++ +|+.||++|+| +.|++|+||+++....+ +++. +. +| +.+.|.||.+-++... ....
T Consensus 80 ~~LKgH~~~vt~~--~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~--~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDV--AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSV--KRGN 155 (420)
T ss_pred hhhhccCCceeee--EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEE--ccCC
Confidence 5678999999999 89999999999 56999999999862111 1111 11 23 7899999977555442 3557
Q ss_pred eEEEEECCC---CceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EE
Q 000177 1618 GILLYDIQT---YQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GG 1686 (1922)
Q Consensus 1618 tIrIWDlrT---gk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sV 1686 (1922)
++++|-+.. |.....+....-......|...+ +-...++.+|++++ .|||++ |+.+.+++...... ..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 899997753 22211111000000113455555 44556778888887 899999 99988887665555 78
Q ss_pred EEecCCCEEEEEe-----EEEecC---CC-----eEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccc
Q 000177 1687 GFHPAGNEVIINS-----EVWDLR---KF-----RLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVK 1751 (1922)
Q Consensus 1687 aFSPdG~~LASGS-----eIWDLr---Tg-----klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~k 1751 (1922)
+.||+|++|++++ ++|.+- .| ..+..++||.. ..++|||+.+.+++++++..|.+|..-
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd------ 308 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD------ 308 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc------
Confidence 9999999999999 689763 12 23456778887 799999999999999877766665321
Q ss_pred cCCcceEEEEecCCCceeeee-----ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1752 HPLFAAFRTVDAINYSDIATI-----PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1752 sp~~ssFrt~Da~dys~IaTi-----dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++---..+-..+.+. +....-..++.+|++..+|+.. .+.+.+|..
T Consensus 309 ------VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l~~~~s 359 (420)
T KOG2096|consen 309 ------VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDLKVFAS 359 (420)
T ss_pred ------ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-------CCceEEEEc
Confidence 111001111111111 1122344899999999999762 355777753
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=140.35 Aligned_cols=215 Identities=17% Similarity=0.277 Sum_probs=154.9
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEecCCcEEEeccCCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSSSSQDVHLWNASSI 1584 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSSsDgtVkLWDl~t~ 1584 (1922)
.|. .++.+|+|.+ ...+++|+-||.|+.+|+++++. ..+..|..+|.|| .+++- +.+|++|+|++|++||.+.
T Consensus 52 ~~~-~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci--~~~~~~~~vIsgsWD~~ik~wD~R~- 125 (323)
T KOG1036|consen 52 KHG-APLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCI--EYSYEVGCVISGSWDKTIKFWDPRN- 125 (323)
T ss_pred ecC-CceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEE--EeeccCCeEEEcccCccEEEEeccc-
Confidence 477 8999999987 56899999999999999988875 4566799999999 56654 4455557899999999986
Q ss_pred CCCcceEecccee-EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1585 AGGPMHSFEGCKA-ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1585 ~gk~l~tf~gh~s-VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
..+..++..... -+.+-.|+.|+.| +.|..+.+||+++-....+.. .....+...++++.|++.-++.++
T Consensus 126 -~~~~~~~d~~kkVy~~~v~g~~LvVg---~~~r~v~iyDLRn~~~~~q~r-----eS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 126 -KVVVGTFDQGKKVYCMDVSGNRLVVG---TSDRKVLIYDLRNLDEPFQRR-----ESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred -cccccccccCceEEEEeccCCEEEEe---ecCceEEEEEcccccchhhhc-----cccceeEEEEEEEecCCCceEEEe
Confidence 444445443221 1233357888888 788999999999755433221 011246667789999776666555
Q ss_pred -------EEEEcCC--CcceeeeccCCC---------ce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-
Q 000177 1664 -------ILWDRRN--SVPVHRFDQFTD---------HG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1664 -------rLWDlrt--gk~I~kf~gh~~---------~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~- 1718 (1922)
-.+|.+. .+.-..|+.|.. +| +++|||-...++||+ .+||+.+.+.+..+.....
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S 276 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS 276 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc
Confidence 2344331 122334444432 23 899999999999998 4999999998888887644
Q ss_pred -eeEEEccCCCEEEEEEc
Q 000177 1719 -TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1719 -~sVaFSPdG~~LaSgs~ 1735 (1922)
.+++|+.+|..|+.+..
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 79999999999998853
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-09 Score=124.14 Aligned_cols=218 Identities=25% Similarity=0.433 Sum_probs=164.2
Q ss_pred eeEEecCCCCCCEEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCCcEEEEec--C
Q 000177 1500 PWRTCRDDAGALLTCITF-LGDSS-HIAVGSH-TKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--S 1573 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaF-SPDG~-lLASGS~-DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--D 1573 (1922)
.+..+.++....+..+.+ ++++. +++..+. |+.+++|++.. ......+..|...|..+ .|+|++.+++++. |
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~ 177 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL--AFSPDGKLLASGSSLD 177 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEE--EECCCCCEEEecCCCC
Confidence 455566633136777777 88887 5555444 99999999988 77888899999999999 8999998777753 9
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceee-eeccccccccCCCCcc
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEA-KLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~-tL~d~s~~~~~~gh~~ 1647 (1922)
+.+++|++.. +..+..+.+| .++.|+|++. .++++ +.|+.|++||...+..+. .+. +|..
T Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~d~~i~~wd~~~~~~~~~~~~---------~~~~ 243 (466)
T COG2319 178 GTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGLLIASG---SSDGTIRLWDLSTGKLLRSTLS---------GHSD 243 (466)
T ss_pred CceEEEEcCC--CceEEeeccCCCceEEEEEcCCcceEEEEe---cCCCcEEEEECCCCcEEeeecC---------CCCc
Confidence 9999999987 6677777653 7899999988 55554 789999999999777766 343 3443
Q ss_pred e-EEEEcCCCCeEeecc-----EEEEcCCCcc-eeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1648 S-QIHFSPSDTMLLWNG-----ILWDRRNSVP-VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1648 ~-vVaFSPdG~lLaSgg-----rLWDlrtgk~-I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
. ...|+|++.++++++ ++||++.... +..+.+|...+ ++.|+|++..+++++ .+||+.+........
T Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred ceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 3 348999997777665 9999997664 55556777777 889999999888866 599998887666665
Q ss_pred --CCCc--eeEEEccCCCEEEEE
Q 000177 1715 --SLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1715 --gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.|.. ..+.|++++..++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 324 LKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred ecccCCceEEEEECCCCCEEEEe
Confidence 6654 677774333555555
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=144.04 Aligned_cols=189 Identities=21% Similarity=0.331 Sum_probs=139.2
Q ss_pred CCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECC----------------CCCceeeeccCCCCeeEEEeeecC--CC
Q 000177 1506 DDAGALLTCITFLGDS--SHIAVGSHTKELKIFDSN----------------SSSPLESCTSHQAPVTLVQSHLSG--ET 1565 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG--~lLASGS~DGtIkIWDl~----------------tgk~l~tL~gHss~VtsLq~afSp--DG 1565 (1922)
+|. +.++.+.-++-| .+.++=+..|.|+||++. ..+++.++.+|...=+.| .||| .|
T Consensus 149 ~h~-g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~L--dWSp~~~g 225 (440)
T KOG0302|consen 149 PHY-GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGL--DWSPIKTG 225 (440)
T ss_pred ccc-cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceee--eccccccc
Confidence 577 778888777744 466667788999999984 235678899999999999 6676 44
Q ss_pred cEEEEec-CCcEEEeccCCCCCCc-ceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1566 QLLLSSS-SQDVHLWNASSIAGGP-MHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1566 ~lLaSSs-DgtVkLWDl~t~~gk~-l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
. |++|+ -+.|++|...++..+. ...|.+| -.++|||. ...|++| +.|++|+|||+|.+.....+.
T Consensus 226 ~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc---S~DgsIrIWDiRs~~~~~~~~---- 297 (440)
T KOG0302|consen 226 R-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC---SCDGSIRIWDIRSGPKKAAVS---- 297 (440)
T ss_pred c-cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee---ecCceEEEEEecCCCccceeE----
Confidence 4 34443 6789999988722111 1334455 56899996 4678888 889999999999984333332
Q ss_pred cccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC---CcceeeeccCCCce-EEEEecCCCE-EEEEe-----EEEe
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN---SVPVHRFDQFTDHG-GGGFHPAGNE-VIINS-----EVWD 1703 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt---gk~I~kf~gh~~~V-sVaFSPdG~~-LASGS-----eIWD 1703 (1922)
...++..++++.|+..-.+|++++ +|||+|+ ++++..|+-|..+| ++.|||...- |++++ -|||
T Consensus 298 -~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 298 -TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred -eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 122455778899999999999988 9999995 57899999999999 9999997643 33333 3999
Q ss_pred cCC
Q 000177 1704 LRK 1706 (1922)
Q Consensus 1704 LrT 1706 (1922)
+..
T Consensus 377 lsv 379 (440)
T KOG0302|consen 377 LSV 379 (440)
T ss_pred eec
Confidence 863
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-11 Score=150.58 Aligned_cols=193 Identities=14% Similarity=0.107 Sum_probs=130.9
Q ss_pred CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCcceEeccc-eeEEEcCC
Q 000177 1529 HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGPMHSFEGC-KAARFSNS 1603 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPD 1603 (1922)
.+..|.|||.+... ...+..|...|.+. .|||||+.|+..+ +..|++||+.+...+.+..+.++ ..++|+||
T Consensus 182 ~~~~i~i~d~dg~~-~~~lt~~~~~v~~p--~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 182 QPYEVRVADYDGFN-QFIVNRSSQPLMSP--AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD 258 (429)
T ss_pred ceEEEEEECCCCCC-ceEeccCCCccccc--eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence 35789999986554 56677788889999 8899999888742 24699999987222234445554 57899999
Q ss_pred CCEEEEeecCCCCCeEE--EEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCC-cce
Q 000177 1604 GNLFAALPTETSDRGIL--LYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNS-VPV 1674 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIr--IWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtg-k~I 1674 (1922)
|++|+.++ ..++.+. +||+.++.. ..+. ..........|+|+|+.|+..+ .||++... ...
T Consensus 259 G~~La~~~--~~~g~~~Iy~~d~~~~~~-~~lt-------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 259 GSRLAFAS--SKDGVLNIYVMGANGGTP-SQLT-------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred CCEEEEEE--ecCCcEEEEEEECCCCCe-Eeec-------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 99988863 3456544 556666654 3333 0122233489999999776432 78887542 223
Q ss_pred eeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEcc
Q 000177 1675 HRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1675 ~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~ 1736 (1922)
..+ .+.. .+..|+|+|++|+..+ -+||+.+++.......+....+.|+|+|++|+.+..+
T Consensus 329 ~~l-~~~~-~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 329 SLV-GGRG-YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred EEe-cCCC-CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcC
Confidence 333 3332 4578999999998876 2789988875433333344688999999999988543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=141.77 Aligned_cols=237 Identities=8% Similarity=0.062 Sum_probs=168.6
Q ss_pred cccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC
Q 000177 1486 RNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1486 g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG 1565 (1922)
+....|+. -..+-...++.+|.+..|-.++|+ ++..|++.+.+|+|.-||+.+++....+....+.|+++ +.+|.+
T Consensus 47 g~IEiwN~-~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsi--ai~p~~ 122 (691)
T KOG2048|consen 47 GNIEIWNL-SNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSI--AINPEN 122 (691)
T ss_pred CcEEEEcc-CCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEE--EeCCcc
Confidence 34444444 224445677889888899999999 56689999999999999999999999999999999999 888888
Q ss_pred cEEEE-ecCCcEEEeccCCCCCCcce--Eec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1566 QLLLS-SSSQDVHLWNASSIAGGPMH--SFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1566 ~lLaS-SsDgtVkLWDl~t~~gk~l~--tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
..++. |.||.+..++... ++..+ .|. -+.++.|+|++..+++| +.||.|++||..+++.+....-...
T Consensus 123 ~~l~IgcddGvl~~~s~~p--~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G---s~Dg~Iriwd~~~~~t~~~~~~~~d 197 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGP--DKITYKRSLMRQKSRVLSLSWNPTGTKIAGG---SIDGVIRIWDVKSGQTLHIITMQLD 197 (691)
T ss_pred ceEEeecCCceEEEEecCC--ceEEEEeecccccceEEEEEecCCccEEEec---ccCceEEEEEcCCCceEEEeeeccc
Confidence 87777 4799777777765 33221 221 14789999999999999 8999999999999988773320000
Q ss_pred cc-cCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe---EEEecC--CC
Q 000177 1639 NL-TGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---EVWDLR--KF 1707 (1922)
Q Consensus 1639 ~~-~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---eIWDLr--Tg 1707 (1922)
.. ....--++.+.|-.++.++..++ .+||...+..+..+..|...+ +++..+++.++.+++ ++..+. +.
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred ccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 00 00111233356665665555333 999999999999999999888 999999999999998 343332 21
Q ss_pred e------EEEEEcCCCceeEEEccCCCEEEEE
Q 000177 1708 R------LLRSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1708 k------lL~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
+ .-+.+++|+..+++..++ .++++
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sg 307 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISG 307 (691)
T ss_pred ccceeeeccccCCcccceeeeeecc--eEEec
Confidence 1 112344566666666554 44444
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-10 Score=134.19 Aligned_cols=252 Identities=12% Similarity=0.146 Sum_probs=157.6
Q ss_pred EEEeCCCcEEEEECCC-CC--ceeeeccCCCCeeEEEeeecCCCcEEEEe--cCCcEEEeccCCCCCCc--ceEec---c
Q 000177 1525 AVGSHTKELKIFDSNS-SS--PLESCTSHQAPVTLVQSHLSGETQLLLSS--SSQDVHLWNASSIAGGP--MHSFE---G 1594 (1922)
Q Consensus 1525 ASGS~DGtIkIWDl~t-gk--~l~tL~gHss~VtsLq~afSpDG~lLaSS--sDgtVkLWDl~t~~gk~--l~tf~---g 1594 (1922)
++...++.|.+|++.+ ++ .+.++. +.+....+ .++|++++|+.+ .++.|.+|++.. .+.. +.... .
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l--~~spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPM--VISPDKRHLYVGVRPEFRVLSYRIAD-DGALTFAAESPLPGS 81 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccE--EECCCCCEEEEEECCCCcEEEEEECC-CCceEEeeeecCCCC
Confidence 3446789999999964 33 334443 34556777 789999988664 488899999963 1322 22221 1
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCC-cceEEEEcCCCCeEeecc------EEE
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGH-AYSQIHFSPSDTMLLWNG------ILW 1666 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh-~~~vVaFSPdG~lLaSgg------rLW 1666 (1922)
...+.|+|+++++++++ ..++.|.+||+.+.. ...... ...+. ....++|+|+|+++++.+ .+|
T Consensus 82 p~~i~~~~~g~~l~v~~--~~~~~v~v~~~~~~g~~~~~~~------~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 82 PTHISTDHQGRFLFSAS--YNANCVSVSPLDKDGIPVAPIQ------IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred ceEEEECCCCCEEEEEE--cCCCeEEEEEECCCCCCCCcee------eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 26799999999988873 347899999997432 211111 00011 122378999999887544 899
Q ss_pred EcCCCccee-------eeccCCCceEEEEecCCCEEEEEe------EEEecCC--C--eEEEEEcCCCc--------eeE
Q 000177 1667 DRRNSVPVH-------RFDQFTDHGGGGFHPAGNEVIINS------EVWDLRK--F--RLLRSVPSLDQ--------TTI 1721 (1922)
Q Consensus 1667 Dlrtgk~I~-------kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrT--g--klL~tl~gH~~--------~sV 1721 (1922)
|+.+...+. .+.....+..+.|+|+|+++++.. .+|++.. + +.+.++..+.. ..+
T Consensus 154 d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred EECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 998633221 122223334899999999998776 3899873 3 44555542211 258
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC----CCceeeeeccCCceEEEEEcCCCceEEEEecCC
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI----NYSDIATIPVDRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~----dys~IaTidvkr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
.|+|+|+++|++.+.. ..+.+|+.. ....+..+.......++.++|+|+++.+...
T Consensus 234 ~~~pdg~~lyv~~~~~------------------~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-- 293 (330)
T PRK11028 234 HITPDGRHLYACDRTA------------------SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-- 293 (330)
T ss_pred EECCCCCEEEEecCCC------------------CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc--
Confidence 8999999999983211 123333321 1223334433344567899999999998742
Q ss_pred CCCccceEEEEEec
Q 000177 1798 QEDMFSSARIYEIG 1811 (1922)
Q Consensus 1798 s~d~dSsVRLyEVG 1811 (1922)
.+..+.+|++.
T Consensus 294 ---~~~~v~v~~~~ 304 (330)
T PRK11028 294 ---KSHHISVYEID 304 (330)
T ss_pred ---cCCcEEEEEEc
Confidence 23678888763
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.6e-11 Score=145.92 Aligned_cols=262 Identities=13% Similarity=0.184 Sum_probs=182.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--cee-----eeccCCCCeeEEEeeecCCCcEEEE-ecCCc
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLE-----SCTSHQAPVTLVQSHLSGETQLLLS-SSSQD 1575 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~-----tL~gHss~VtsLq~afSpDG~lLaS-SsDgt 1575 (1922)
+.||. +.|+++.|+|.+..|+++|.|.++.||...+.. -+. ...|....-+.. .|+|++..+++ |.-|.
T Consensus 263 l~GHe-DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~--lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 263 LMGHE-DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGG--LWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hcCcc-cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeE--EEcCCCCEEEEecccCc
Confidence 45999 999999999999999999999999999876542 222 223344557777 78999998888 66999
Q ss_pred EEEeccCCC-CCCcceE----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECC--------------------CC---
Q 000177 1576 VHLWNASSI-AGGPMHS----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQ--------------------TY--- 1627 (1922)
Q Consensus 1576 VkLWDl~t~-~gk~l~t----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr--------------------Tg--- 1627 (1922)
.++|-.... ...+... +.+++.++|+|.|.++++. +.|.+-|+|--- .-
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeecccccccceeeecccccccccceeeehc
Confidence 999983320 0111222 3345899999999999999 767766665321 00
Q ss_pred ------------ceeeeecc------------------------------------------------------------
Q 000177 1628 ------------QLEAKLSD------------------------------------------------------------ 1635 (1922)
Q Consensus 1628 ------------k~i~tL~d------------------------------------------------------------ 1635 (1922)
+.+..|..
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 00001100
Q ss_pred ------cc--------------ccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeeccCCCce-
Q 000177 1636 ------TS--------------VNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQFTDHG- 1684 (1922)
Q Consensus 1636 ------~s--------------~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~gh~~~V- 1684 (1922)
|. -...+||+.+.+++.+|++++++++. +||+..+...++.+.+|.-.|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT 576 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence 00 01244666777799999999999887 899999998888999999888
Q ss_pred EEEEecCCCEEEEEeE-----EEecCCCe----EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccC
Q 000177 1685 GGGFHPAGNEVIINSE-----VWDLRKFR----LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHP 1753 (1922)
Q Consensus 1685 sVaFSPdG~~LASGSe-----IWDLrTgk----lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp 1753 (1922)
.+.|||||++|++.|+ +|...... ....++.|.. +...|+|++.++++++++....+|.... .+
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~-~~---- 651 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD-LR---- 651 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC-ch----
Confidence 9999999999999994 77664321 1233567776 8999999999999998777555543211 00
Q ss_pred CcceEEEEecCCC-ceeeeeccCCceEEEEEcCC
Q 000177 1754 LFAAFRTVDAINY-SDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1754 ~~ssFrt~Da~dy-s~IaTidvkr~I~dLa~SPd 1786 (1922)
.+| ..++.+.....|..+++.|.
T Consensus 652 ----------d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 652 ----------DKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred ----------hhhhhhhchhccCCceeeEEeecc
Confidence 011 12245566677888888763
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=137.64 Aligned_cols=211 Identities=16% Similarity=0.255 Sum_probs=161.9
Q ss_pred CCEEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCCceeeec--cCCCCe---eEEEeeecCCCcEEEEecCCcEE
Q 000177 1510 ALLTCITFL-------GDSSHIAVGSHTKELKIFDSNSSSPLESCT--SHQAPV---TLVQSHLSGETQLLLSSSSQDVH 1577 (1922)
Q Consensus 1510 ~~Vt~LaFS-------PDG~lLASGS~DGtIkIWDl~tgk~l~tL~--gHss~V---tsLq~afSpDG~lLaSSsDgtVk 1577 (1922)
..|...+|- |+..++++.+.+.-|++||..+|+...++. .|...+ .++ .|+|||..|.+|....|+
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL--~Fs~DGeqlfaGykrcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSL--QFSPDGEQLFAGYKRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeE--EecCCCCeEeecccceEE
Confidence 446666664 677899999999999999999999887774 455544 466 899999999999999999
Q ss_pred EeccCCCCCC-cce-Ee-------cc-ceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1578 LWNASSIAGG-PMH-SF-------EG-CKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1578 LWDl~t~~gk-~l~-tf-------~g-h~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+||+..+... +++ ++ .+ +.+++|+|. .+.++.+ +.-.++-||.-..+.++..+- +|.
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~g---sY~q~~giy~~~~~~pl~llg---------gh~ 250 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVG---SYGQRVGIYNDDGRRPLQLLG---------GHG 250 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeee---cccceeeeEecCCCCceeeec---------ccC
Confidence 9999432111 111 11 22 378999994 5578887 677888888888888877764 555
Q ss_pred ceE--EEEcCCCCeEeecc------EEEEcCCC-cceeeeccCCCce--EE--EEecCCCEEEEEe-----EEEecCC-C
Q 000177 1647 YSQ--IHFSPSDTMLLWNG------ILWDRRNS-VPVHRFDQFTDHG--GG--GFHPAGNEVIINS-----EVWDLRK-F 1707 (1922)
Q Consensus 1647 ~~v--VaFSPdG~lLaSgg------rLWDlrtg-k~I~kf~gh~~~V--sV--aFSPdG~~LASGS-----eIWDLrT-g 1707 (1922)
..+ +.|.++|+.|+++. ..||+|.. .++..+..|.... .+ ...|+|++|++|+ ++||+++ +
T Consensus 251 gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 251 GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 555 99999999999998 69999964 5888888876532 44 4568999999996 6999998 6
Q ss_pred eEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1708 RLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1708 klL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
..+..+..+.. +.|++||-=.++++++
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred CcccccccccccccceecCcccceeeecc
Confidence 76777776665 7999999977777764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=147.78 Aligned_cols=221 Identities=12% Similarity=0.172 Sum_probs=155.2
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEE-e-cCCcEE
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLS-S-SSQDVH 1577 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaS-S-sDgtVk 1577 (1922)
+....|. ..|..+.|-|....|++.+.|.+|++||+.++.+... +.||...|.++ +|.+.+..+++ | .||.|.
T Consensus 94 k~~~aH~-nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~--cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 94 KKPLAHK-NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSE--CFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred ccccccc-ceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchh--hhccCCCcceeeccCCCcEE
Confidence 3345699 9999999999777999999999999999999988776 89999999999 78887765544 4 599999
Q ss_pred EeccCCCCC------------------CcceEe-------cc----cee---EEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1578 LWNASSIAG------------------GPMHSF-------EG----CKA---ARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1578 LWDl~t~~g------------------k~l~tf-------~g----h~s---VaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
|||++.... .+...+ .. +.+ +.+..|...|++++ ..|+.|+|||++
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag--a~D~~iKVWDLR 248 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG--AADSTIKVWDLR 248 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc--CCCcceEEEeec
Confidence 999975110 000000 00 122 56777889999982 359999999999
Q ss_pred CCceeeeeccccccc----cCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC--cceeeeccCCCc---eEEEEecC
Q 000177 1626 TYQLEAKLSDTSVNL----TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS--VPVHRFDQFTDH---GGGGFHPA 1691 (1922)
Q Consensus 1626 Tgk~i~tL~d~s~~~----~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg--k~I~kf~gh~~~---VsVaFSPd 1691 (1922)
+..+.....+..... ....+....+.....|.++++.. ++|++.+- .++..|.++... +.-..+|+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 877665543211110 01122333366667777766433 89998853 366666665432 25578999
Q ss_pred CCEEEEEe-----EEEecCCCe-EEEEEcCCCc--eeEEEccCC
Q 000177 1692 GNEVIINS-----EVWDLRKFR-LLRSVPSLDQ--TTITFNARG 1727 (1922)
Q Consensus 1692 G~~LASGS-----eIWDLrTgk-lL~tl~gH~~--~sVaFSPdG 1727 (1922)
+.+|++|+ -+|.+.+-+ ....+.||.. ++|.|.|.-
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 99999999 399988743 4555668877 789998743
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.5e-12 Score=151.44 Aligned_cols=226 Identities=14% Similarity=0.198 Sum_probs=166.4
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--------SSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--------gk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
+.+..+++.|. +.|+.++|.|....|++++.||+|++|+++. -+++.+|.+|.++|.|+ ..+++++.+.
T Consensus 284 w~ik~tl~s~~-d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v--~v~~n~~~~y 360 (577)
T KOG0642|consen 284 WNIKFTLRSHD-DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCV--VVPSNGEHCY 360 (577)
T ss_pred cceeeeeecch-hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEE--EecCCceEEE
Confidence 34445888999 9999999999999999999999999999942 24577999999999999 8899999999
Q ss_pred Eec-CCcEEEeccCCCCCC---------cceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1570 SSS-SQDVHLWNASSIAGG---------PMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1570 SSs-DgtVkLWDl~t~~gk---------~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
+++ ||+|+.|++.. ... ...++.|| |.+++|.....|+++ +.||++++|+...... .+|..
T Consensus 361 sgg~Dg~I~~w~~p~-n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPP-NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred eeccCceeeeeccCC-CCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEeeccCCcCc-cccCC
Confidence 965 99999997652 111 22345555 678899988889999 8999999999886655 33431
Q ss_pred ccccccCCCCcceE-EEEcCCCC-eEeecc-----EEEEcCCCcceeeeccC--------CCceEEEEecCCCEEEEEe-
Q 000177 1636 TSVNLTGRGHAYSQ-IHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQF--------TDHGGGGFHPAGNEVIINS- 1699 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~v-VaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~gh--------~~~VsVaFSPdG~~LASGS- 1699 (1922)
...|..+. +.|-.... +.++.. .++|...+..+..|... .....+.++|++.+.+++.
T Consensus 436 ------~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 436 ------PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred ------ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 12233332 44433331 222222 45555555544444322 1122789999999998888
Q ss_pred ----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 ----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 ----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+++|..++++++....|.. +++++-|+|.+++++..+.
T Consensus 510 d~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 510 DRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred CCceecccccccccchheeeccceecceeecCCCceEEeecCCc
Confidence 4899999999999888876 8999999999999996544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-11 Score=147.24 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=139.9
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCc--eeeeccCCCCeeEEEeeecCCCcEEEEe--cC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSGETQLLLSS--SS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSpDG~lLaSS--sD 1573 (1922)
.+.+..|. ..+.+.+|||||++|+..+.+ ..|++||+.+++. +..+.+|. ..+ .|+|||+.|+.+ .+
T Consensus 196 ~~~lt~~~-~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~--~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 196 QFIVNRSS-QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAP--AFSPDGSRLAFASSKD 269 (429)
T ss_pred ceEeccCC-CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---Cce--eECCCCCEEEEEEecC
Confidence 45567787 889999999999999988754 3699999988764 33344443 345 889999988763 47
Q ss_pred CcEEEe--ccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCc
Q 000177 1574 QDVHLW--NASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1574 gtVkLW--Dl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~ 1646 (1922)
+.+.|| |+.+ +. +..+.. +....|+|||+.|+.++ ..++...||++.... ....+. +.
T Consensus 270 g~~~Iy~~d~~~--~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~~~~~l~----------~~ 334 (429)
T PRK01742 270 GVLNIYVMGANG--GT-PSQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGGGASLVG----------GR 334 (429)
T ss_pred CcEEEEEEECCC--CC-eEeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEec----------CC
Confidence 766555 5544 33 344433 36799999999888763 345677888765322 122221 11
Q ss_pred ceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEec--CCCeEEEEEcC
Q 000177 1647 YSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDL--RKFRLLRSVPS 1715 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDL--rTgklL~tl~g 1715 (1922)
.....|+|+|++|+..+ .+||+.+++.......+ ...++.|+|||++|+.++ .+|.+ .+++.++++.+
T Consensus 335 ~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 335 GYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 12368999999987655 67999988754322222 223678999999999887 36665 35788888887
Q ss_pred CCc--eeEEEccC
Q 000177 1716 LDQ--TTITFNAR 1726 (1922)
Q Consensus 1716 H~~--~sVaFSPd 1726 (1922)
|.. ..++|||-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 765 67889884
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=143.24 Aligned_cols=197 Identities=17% Similarity=0.263 Sum_probs=142.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCc-------------------ee--eeccCCCCeeEEEeeecCCC-cEEEEe-cCCcE
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSP-------------------LE--SCTSHQAPVTLVQSHLSGET-QLLLSS-SSQDV 1576 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~-------------------l~--tL~gHss~VtsLq~afSpDG-~lLaSS-sDgtV 1576 (1922)
-|+++|.|+.|..|.|||++--.. .+ .-.+|+..|..+ +|+..- ++|+++ .|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L--s~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL--SWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHH--HhccccceeEEecCCCceE
Confidence 467999999999999999852110 01 124799999999 555554 466664 49999
Q ss_pred EEeccCCCCCCcceEecc----ceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCc---eeeeeccccccccCCCCcce
Q 000177 1577 HLWNASSIAGGPMHSFEG----CKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQ---LEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g----h~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk---~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++||+.+ ++|..++.. +.++.|+|. ..++++| +.|++|.++|.|... ....+ ...+.
T Consensus 269 ~lWD~~~--g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---s~D~~V~l~D~R~~~~s~~~wk~----------~g~VE 333 (463)
T KOG0270|consen 269 KLWDVDT--GKPKSSITHHGKKVQTLEWHPYEPSVLLSG---SYDGTVALKDCRDPSNSGKEWKF----------DGEVE 333 (463)
T ss_pred EEEEcCC--CCcceehhhcCCceeEEEecCCCceEEEec---cccceEEeeeccCccccCceEEe----------ccceE
Confidence 9999999 899888874 488999995 6788898 999999999999421 11222 23455
Q ss_pred EEEEcCCCCeEeecc------EEEEcCCC-cceeeeccCCCce-EEEEecCCC-EEEEEe-----EEEecCCCeEEEEEc
Q 000177 1649 QIHFSPSDTMLLWNG------ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg------rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
.++|+|.....+-++ +-+|+|+. +++.+++.|.+.| ++++++.-. ++++++ ++|++..-.. +.+.
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~ 412 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVK 412 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccc
Confidence 599999876554333 88899965 8999999999999 889887654 566666 5999864332 1122
Q ss_pred CCC-----ceeEEEccCCCEEEEEE
Q 000177 1715 SLD-----QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1715 gH~-----~~sVaFSPdG~~LaSgs 1734 (1922)
.|. -.|.++.|+-.++++..
T Consensus 413 ~~~~~~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred cccccccceeecccCCCcceEEEec
Confidence 222 26888889887777764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=149.52 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=156.6
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------CceeeeccCCCCeeEEEeeecCCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----------SPLESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----------k~l~tL~gHss~VtsLq~afSpDG 1565 (1922)
..+.|+.+|++|. ++|.|+++++++.++++|+.||+|+.|++... ....++.||++.|+.+ .+|+..
T Consensus 332 ~~~epi~tfraH~-gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l--~~s~~~ 408 (577)
T KOG0642|consen 332 KDVEPILTFRAHE-GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLL--ALSSTK 408 (577)
T ss_pred cceeeeEEEeccc-CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeee--eecccc
Confidence 4678999999999 99999999999999999999999999976421 2345779999999999 778777
Q ss_pred cEEEE-ecCCcEEEeccCCCCCCcceEecc------ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1566 QLLLS-SSSQDVHLWNASSIAGGPMHSFEG------CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1566 ~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
..|++ ++||+|++|+... ..+ .+|.. +.++.|-... .+.++. ..-+.--++|+.+++.+..+....
T Consensus 409 ~~Llscs~DgTvr~w~~~~--~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~~s~~ 482 (577)
T KOG0642|consen 409 DRLLSCSSDGTVRLWEPTE--ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIFESSA 482 (577)
T ss_pred cceeeecCCceEEeeccCC--cCc-cccCCccccCCcceEeeccchhHhhhhh---cccccccchhhhhhhheeeccccC
Confidence 77777 5699999999976 333 44432 3556654432 222222 223444566777777766665222
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
..........+.+.++|.+.+.+++. +++|..++++++....|...+ ++++.|+|.+|++++ .+|.+..
T Consensus 483 ~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 483 SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 22111223455589999999988887 899999999999999999888 999999999999999 3888876
Q ss_pred CeEEEEEcCC
Q 000177 1707 FRLLRSVPSL 1716 (1922)
Q Consensus 1707 gklL~tl~gH 1716 (1922)
..++.....|
T Consensus 563 k~~~~es~~~ 572 (577)
T KOG0642|consen 563 KTCVLESTAH 572 (577)
T ss_pred hheeeccccc
Confidence 6655544433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=142.08 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=123.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCce---eeeccCCCCeeEEEeeecCCCc-EEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPL---ESCTSHQAPVTLVQSHLSGETQ-LLL 1569 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l---~tL~gHss~VtsLq~afSpDG~-lLa 1569 (1922)
++.++|+.++.+|. +.=+.++||| ....|+||..-+.|++|...+|... .-|.+|+..|-.| .|||... .++
T Consensus 198 ~s~~~Pl~t~~ghk-~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDL--qWSptE~~vfa 274 (440)
T KOG0302|consen 198 DSEFRPLFTFNGHK-GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDL--QWSPTEDGVFA 274 (440)
T ss_pred ccccCceEEecccC-ccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhh--ccCCccCceEE
Confidence 37889999999999 8889999999 2235899999999999999887643 3567899999999 5566543 555
Q ss_pred E-ecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC---ceeeeecccccccc
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTY---QLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg---k~i~tL~d~s~~~~ 1641 (1922)
+ |.|++|+|||++....+.....+. ++-+.|+..-.+|++| +.||+++|||+++. +.+.+|+
T Consensus 275 ScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG---~DdGt~~iwDLR~~~~~~pVA~fk------- 344 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASG---GDDGTLSIWDLRQFKSGQPVATFK------- 344 (440)
T ss_pred eeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeec---CCCceEEEEEhhhccCCCcceeEE-------
Confidence 5 459999999999832222222344 4789999987789998 89999999999864 4445554
Q ss_pred CCCCcceEEEEcCCCCe-Eeecc-----EEEEcCC
Q 000177 1642 GRGHAYSQIHFSPSDTM-LLWNG-----ILWDRRN 1670 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~l-LaSgg-----rLWDlrt 1670 (1922)
.|.+++.++.|+|...- |+++| .|||+..
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 35666777999997644 44444 8999874
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=142.36 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=137.9
Q ss_pred cCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEec-CCcEEEecc
Q 000177 1505 RDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSSS-SQDVHLWNA 1581 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSSs-DgtVkLWDl 1581 (1922)
.+|+ +.|.+++|+.+ .+.||+||.|.+|++||+.++++..++..|...|.++ .|+|. ..+|++|+ |++|.|.|.
T Consensus 240 ~gHT-davl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l--~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHT-DAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTL--EWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccch-HHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEE--EecCCCceEEEeccccceEEeeec
Confidence 3698 89999999974 4589999999999999999999999999999999999 55554 56777765 999999999
Q ss_pred CCCC-CCcceEecc-ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1582 SSIA-GGPMHSFEG-CKAARFSNSG-NLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1582 ~t~~-gk~l~tf~g-h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
+... .....+|.+ +-.+.|.|.. ..|+++ +.||+|+-+|+|.. +++.++. .|...+..+++++.-.
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~---tddG~v~~~D~R~~~~~vwt~~-------AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS---TDDGTVYYFDIRNPGKPVWTLK-------AHDDEISGLSVNIQTP 386 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEe---cCCceEEeeecCCCCCceeEEE-------eccCCcceEEecCCCC
Confidence 8521 122345544 5789999964 455665 88999999999975 7777775 1233344488888765
Q ss_pred e-Eeecc-----EEEEcCCCcc--eeeeccCCCce-EEEEecCCC-EEEEEe-----EEEecCCCeEE
Q 000177 1658 M-LLWNG-----ILWDRRNSVP--VHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1658 l-LaSgg-----rLWDlrtgk~--I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIWDLrTgklL 1710 (1922)
. +++++ ++|++....+ ++.-.-.-+.. |.++.|+-. +++.|+ +|||+-+...+
T Consensus 387 ~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 5 44555 9999885443 22111111112 666777654 445555 59999876544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=131.08 Aligned_cols=227 Identities=14% Similarity=0.188 Sum_probs=145.8
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCCc--eeeeccCCCCeeEEEeeecCCCcEEEEec--
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGS-HTKELKIFDSN-SSSP--LESCTSHQAPVTLVQSHLSGETQLLLSSS-- 1572 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS-~DGtIkIWDl~-tgk~--l~tL~gHss~VtsLq~afSpDG~lLaSSs-- 1572 (1922)
+.++++. +. +....++|+|++++|++++ .++.|.+|+++ +++. ..... .......+ .|+|++++|+++.
T Consensus 26 ~~~~~~~-~~-~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i--~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 26 TLLQVVD-VP-GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI--STDHQGRFLFSASYN 100 (330)
T ss_pred eeeeEEe-cC-CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE--EECCCCCEEEEEEcC
Confidence 3455554 33 4567899999999987765 58899999997 3332 12221 22345667 8899999888753
Q ss_pred CCcEEEeccCCCCC---CcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1573 SQDVHLWNASSIAG---GPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1573 DgtVkLWDl~t~~g---k~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++.|.+|++.+. + ..+..+.+ .+.++|+|++++++++. ..++.|.+||+.+...+......... ...+..
T Consensus 101 ~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~g~l~~~~~~~~~-~~~g~~ 176 (330)
T PRK11028 101 ANCVSVSPLDKD-GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC--LKEDRIRLFTLSDDGHLVAQEPAEVT-TVEGAG 176 (330)
T ss_pred CCeEEEEEECCC-CCCCCceeeccCCCcccEeEeCCCCCEEEEee--CCCCEEEEEEECCCCcccccCCCcee-cCCCCC
Confidence 889999999741 2 22333332 36788999999887662 56799999999874332210000000 001222
Q ss_pred ceEEEEcCCCCeEeecc------EEEEcCC--Cc--ceeeeccCCC------c-eEEEEecCCCEEEEEe------EEEe
Q 000177 1647 YSQIHFSPSDTMLLWNG------ILWDRRN--SV--PVHRFDQFTD------H-GGGGFHPAGNEVIINS------EVWD 1703 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg------rLWDlrt--gk--~I~kf~gh~~------~-VsVaFSPdG~~LASGS------eIWD 1703 (1922)
...+.|+|+|+++++.. .+||+.. ++ .+.++..... + ..+.|+|+|++++++. .+|+
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 33489999999887543 8899973 32 3444432211 1 2588999999999876 3888
Q ss_pred cCCC----eEEEEEcCC-CceeEEEccCCCEEEEEE
Q 000177 1704 LRKF----RLLRSVPSL-DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1704 LrTg----klL~tl~gH-~~~sVaFSPdG~~LaSgs 1734 (1922)
+.+. +.+..++.. ..+.+.|+|+|++|+++.
T Consensus 257 i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 257 VSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 8543 234444322 226899999999999984
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-09 Score=130.77 Aligned_cols=294 Identities=14% Similarity=0.173 Sum_probs=192.9
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE---
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTK--------ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--- 1570 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DG--------tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--- 1570 (1922)
+.+.||. ..|.|++.+||--.+++|-.-| .|+|||..+-+.+..+......|.+++|+-...|.++..
T Consensus 98 r~y~GH~-ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 98 RHYLGHN-DDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred ccccCCC-CceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence 3457899 9999999999988888876666 499999888888888877788999995444446777776
Q ss_pred ecCCcEEEeccCCCC-CCcceEe-ccceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1571 SSSQDVHLWNASSIA-GGPMHSF-EGCKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~-gk~l~tf-~gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
+.+..+.+||++... ..++.+. +.+..+.|+|.+ +.++++ ..+.+.+|+.+.+...++.. ..... ....+
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~----Gk~H~~Fw~~~~~~l~k~~~--~fek~-ekk~V 249 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC----GKGHLYFWTLRGGSLVKRQG--IFEKR-EKKFV 249 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe----CCceEEEEEccCCceEEEee--ccccc-cceEE
Confidence 346678999998621 1122323 235778999954 566665 35779999999887766542 01110 11334
Q ss_pred eEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE-----EEecCCCeE--------
Q 000177 1648 SQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VWDLRKFRL-------- 1709 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IWDLrTgkl-------- 1709 (1922)
.+++|.++|..+-.++ .||+..+.+..+....|.+.| +++.-.+|..|- |++ .||-. .+.
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe 327 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPE 327 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-ccccccccCch
Confidence 4599999999888544 899998887776666888888 888888888665 773 67621 110
Q ss_pred ----E-----------------------------EEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhc---ccc--
Q 000177 1710 ----L-----------------------------RSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVH---TRR-- 1749 (1922)
Q Consensus 1710 ----L-----------------------------~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh---~rr-- 1749 (1922)
+ .++.+|.. +.++.+|+.+.++++.++....+|..-. ++.
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~ 407 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIE 407 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEec
Confidence 1 11224433 6788888888887775544333332100 000
Q ss_pred ------cccCC--------cceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1750 ------VKHPL--------FAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1750 ------~ksp~--------~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+|. ...+-++|..+-..+.......++..++++|+|.++|+.. .+..+.||.|.
T Consensus 408 d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs------~d~~iyiy~Vs 477 (626)
T KOG2106|consen 408 DPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS------HDNHIYIYRVS 477 (626)
T ss_pred CceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec------CCCeEEEEEEC
Confidence 01221 1234455665533333333366799999999999999864 34566777664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-11 Score=144.63 Aligned_cols=226 Identities=15% Similarity=0.204 Sum_probs=162.2
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
|..+.+..+++|++|. +.|+|++|+.||+.+++|+.|+.|.||+-. ....+ ..|+..|.|+ .|+|-.+.|++|
T Consensus 38 yD~ndG~llqtLKgHK-DtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCM--sFNP~~h~LasC 111 (1081)
T KOG1538|consen 38 YDTSDGTLLQPLKGHK-DTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCM--SFNPITHQLASC 111 (1081)
T ss_pred EeCCCccccccccccc-ceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEe--ecCchHHHhhhc
Confidence 3446778899999999 999999999999999999999999999853 22333 4599999999 999999999999
Q ss_pred cCCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
+=...-+|.... +.+...+ .+.+++|..||++|+.| -.+|+|.|-+-. +.....+.. ..+.+.+++
T Consensus 112 sLsdFglWS~~q---K~V~K~kss~R~~~CsWtnDGqylalG---~~nGTIsiRNk~-gEek~~I~R----pgg~Nspiw 180 (1081)
T KOG1538|consen 112 SLSDFGLWSPEQ---KSVSKHKSSSRIICCSWTNDGQYLALG---MFNGTISIRNKN-GEEKVKIER----PGGSNSPIW 180 (1081)
T ss_pred chhhccccChhh---hhHHhhhhheeEEEeeecCCCcEEEEe---ccCceEEeecCC-CCcceEEeC----CCCCCCCce
Confidence 877788998875 2232222 25789999999999999 788999988543 444333431 122345667
Q ss_pred EEEEcCCCC-----eEeecc-----EEEEcCCCcceeeeccCC-CceEEEEecCCCEEEEEe-----EEEecCCCeEEEE
Q 000177 1649 QIHFSPSDT-----MLLWNG-----ILWDRRNSVPVHRFDQFT-DHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1649 vVaFSPdG~-----lLaSgg-----rLWDlrtgk~I~kf~gh~-~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~t 1712 (1922)
.++|+|... .++... .+|.+ +|+.|.+-.... .+.|+.+.|||.|++.|+ ++|- +.|-.+.+
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGT 258 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGT 258 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEee
Confidence 799999653 222221 23322 244443222221 334899999999999988 2443 44777777
Q ss_pred EcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1713 VPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1713 l~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+...+. |.|+..|++++++.|..+.
T Consensus 259 vg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 259 VGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred ccccceeEEEEEEccCCceEEEEEccC
Confidence 765444 8999999999999886544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=148.65 Aligned_cols=204 Identities=15% Similarity=0.217 Sum_probs=159.6
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCC
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLG---DSSHIAVGSHTKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSP---DG~lLASGS~DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG 1565 (1922)
.+.+.....+.+.++..|. +.|.|+.||. ..++||+++.|..|+|||+.. ..++.++.+|...|++|+|+-+.-.
T Consensus 483 lrVy~Lq~l~~~~~~eAHe-sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHE-SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred eEEEEehhhhhhhheeccc-ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 3445556666677788999 9999999996 456999999999999999854 4677899999999999965443322
Q ss_pred cEEEE-ecCCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1566 QLLLS-SSSQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1566 ~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
..+++ |.|..|.+--.+. ......|.. .+.++..|+.++++++ +.|+.|+|||+.+|+..++|+
T Consensus 562 ~~MiscGADksimFr~~qk--~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~---cQDrnirif~i~sgKq~k~FK- 635 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQK--ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV---CQDRNIRIFDIESGKQVKSFK- 635 (1080)
T ss_pred eEEEeccCchhhheehhcc--ccCceeccccccccccceEEEeeeCCCcceEEEE---ecccceEEEeccccceeeeec-
Confidence 44555 6688776444332 111122221 2678999999999999 899999999999999999997
Q ss_pred ccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE-----EE
Q 000177 1636 TSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VW 1702 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IW 1702 (1922)
..++|.... +...|.|.||++.. .++|.-+|.++.+..||...+ .+.|.+|.++|++.+- ||
T Consensus 636 -----gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 636 -----GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred -----ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 234554433 88899999999665 899999999999999999999 9999999999999882 89
Q ss_pred ecC
Q 000177 1703 DLR 1705 (1922)
Q Consensus 1703 DLr 1705 (1922)
.+.
T Consensus 711 ~lp 713 (1080)
T KOG1408|consen 711 KLP 713 (1080)
T ss_pred ECc
Confidence 875
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-10 Score=140.43 Aligned_cols=211 Identities=12% Similarity=0.194 Sum_probs=163.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-eeeeccC-CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-LESCTSH-QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-l~tL~gH-ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk 1587 (1922)
.+|+|++|+.+.+.||.+-.||.|-||++..+=. ...+.+| ...|.+| +|++.++++.++-+|+|.-||+.+ .+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L--~W~e~~RLFS~g~sg~i~EwDl~~--lk 101 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESL--AWAEGGRLFSSGLSGSITEWDLHT--LK 101 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeE--EEccCCeEEeecCCceEEEEeccc--Cc
Confidence 6799999999999999999999999999977543 3455555 5679999 677888888888899999999998 77
Q ss_pred cceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1588 PMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1588 ~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
++..+.. +|+++.+|.+..++.| +.||.+..+++..++...... +.. .....-+++|+|++..+++|+
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~Ig---cddGvl~~~s~~p~~I~~~r~---l~r--q~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIG---CDDGVLYDFSIGPDKITYKRS---LMR--QKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEee---cCCceEEEEecCCceEEEEee---ccc--ccceEEEEEecCCccEEEecc
Confidence 7766653 5999999999999988 788988888887776654332 110 123344599999999999877
Q ss_pred -----EEEEcCCCcceeee----ccCCC---c-e-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEE
Q 000177 1664 -----ILWDRRNSVPVHRF----DQFTD---H-G-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTIT 1722 (1922)
Q Consensus 1664 -----rLWDlrtgk~I~kf----~gh~~---~-V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVa 1722 (1922)
++||+.++..++.. .+... . + ++.|-.++. |++|. .+||-..+.+++.+..|+. .+++
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 99999999877622 22222 2 2 666665554 55554 5999999999999998877 7899
Q ss_pred EccCCCEEEEE
Q 000177 1723 FNARGDVIYAI 1733 (1922)
Q Consensus 1723 FSPdG~~LaSg 1733 (1922)
.++++++++++
T Consensus 253 v~~~~d~vfsa 263 (691)
T KOG2048|consen 253 VADNEDRVFSA 263 (691)
T ss_pred EcCCCCeEEEc
Confidence 99998887765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=141.41 Aligned_cols=215 Identities=14% Similarity=0.222 Sum_probs=143.3
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEECCCCCc------eeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCC
Q 000177 1514 CITFLG---DSSHIAVGSHTKELKIFDSNSSSP------LESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASS 1583 (1922)
Q Consensus 1514 ~LaFSP---DG~lLASGS~DGtIkIWDl~tgk~------l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t 1583 (1922)
.+.|++ ...+|+.+..||.|.++|....+. ++.+.+|.+.|..+ .|.|....|++ +.|.++++||+..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl--~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDL--KWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEee--ccCCCceeEEEccCCceeeeeeecc
Confidence 366776 344899999999999999865433 35668999999999 66775555566 6799999999998
Q ss_pred CCCCcceE--eccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceee--e----ec---cc---cccc----
Q 000177 1584 IAGGPMHS--FEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEA--K----LS---DT---SVNL---- 1640 (1922)
Q Consensus 1584 ~~gk~l~t--f~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~--t----L~---d~---s~~~---- 1640 (1922)
.+++.. +.|| .+++|+|. ...|++| +.||.|.|||++-...-. . +. .. ....
T Consensus 132 --s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG---gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 132 --SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG---GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred --ceeecceeecccccccchhhhccCCCcceeec---cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 555544 6666 67999995 5677887 899999999998543100 0 00 00 0000
Q ss_pred --cC--CCCcceE---EEEcCCCCeEeecc------EEEEcCCCcc--------eeeeccCCC----ceEEEEecCCCEE
Q 000177 1641 --TG--RGHAYSQ---IHFSPSDTMLLWNG------ILWDRRNSVP--------VHRFDQFTD----HGGGGFHPAGNEV 1695 (1922)
Q Consensus 1641 --~~--~gh~~~v---VaFSPdG~lLaSgg------rLWDlrtgk~--------I~kf~gh~~----~VsVaFSPdG~~L 1695 (1922)
.. ++..... +-+..|...|+++| ++||++.... +..+.-+.. .++++....|.+|
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 00 1111111 56678889999887 9999997543 233333321 2266666778887
Q ss_pred EEEe-----EEEecCCC--eEEEEEcCCCc----eeEEEccCCCEEEEEEc
Q 000177 1696 IINS-----EVWDLRKF--RLLRSVPSLDQ----TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1696 ASGS-----eIWDLrTg--klL~tl~gH~~----~sVaFSPdG~~LaSgs~ 1735 (1922)
...+ -+||+.+. .++..+.++.. ..-..+|++.+++++..
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs 337 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS 337 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence 6665 28898764 34555555554 34457899999999853
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-11 Score=144.55 Aligned_cols=210 Identities=21% Similarity=0.274 Sum_probs=143.3
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
+...-+.|.||+ +.|+|+.|+.+|.+|++||.|-.+.|||....+.+..+ .||...|++++|....+++++++| .|.
T Consensus 39 rL~lE~eL~GH~-GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 39 RLDLEAELTGHT-GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hcchhhhhcccc-ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 345567789999 99999999999999999999999999999988888888 899999999965444467788886 599
Q ss_pred cEEEeccCCCC--------CCcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCcee-eeeccccccc
Q 000177 1575 DVHLWNASSIA--------GGPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLE-AKLSDTSVNL 1640 (1922)
Q Consensus 1575 tVkLWDl~t~~--------gk~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i-~tL~d~s~~~ 1640 (1922)
.|+|+|+.... ....+.+..| ..++-.|++ +.|.++ +.||+|+-||++..... .....+....
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa---sEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA---SEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe---cCCcceeeecccCCccCCccccccHHHH
Confidence 99999997511 1122333333 557788877 788998 99999999999863221 1111000000
Q ss_pred cCCCC--cceEEEEcCCCCeEe-ecc-----EEEEcCC--------C----------cceeeec-cCC----C----c--
Q 000177 1641 TGRGH--AYSQIHFSPSDTMLL-WNG-----ILWDRRN--------S----------VPVHRFD-QFT----D----H-- 1683 (1922)
Q Consensus 1641 ~~~gh--~~~vVaFSPdG~lLa-Sgg-----rLWDlrt--------g----------k~I~kf~-gh~----~----~-- 1683 (1922)
..... ...+++++|...+++ .++ ++||.|. + .++..|. +|- . .
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 00111 223489999886555 555 8999542 1 1244442 221 1 1
Q ss_pred -e-EEEEecCCCEEEEEe--E---EEecCCCeEE
Q 000177 1684 -G-GGGFHPAGNEVIINS--E---VWDLRKFRLL 1710 (1922)
Q Consensus 1684 -V-sVaFSPdG~~LASGS--e---IWDLrTgklL 1710 (1922)
. .+.|+|||..|+..- + ++|+..++..
T Consensus 275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 1 578999998776643 2 7787765543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-10 Score=124.27 Aligned_cols=199 Identities=14% Similarity=0.203 Sum_probs=146.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------C-CceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEec
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNS---------S-SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWN 1580 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t---------g-k~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWD 1580 (1922)
.|..-+|+|.+++|+.|+.+|+|.++.+.+ + ..+..+++|.++|+.+ .|. ..+|+++.||.|+=|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~--~f~--d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYL--AFH--DDFLLSGGDGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeee--eee--hhheeeccCceEEEee
Confidence 466678999999999999999999999853 2 2345668999999999 665 4588899899999888
Q ss_pred cCCCCC----CcceE-----------eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1581 ASSIAG----GPMHS-----------FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1581 l~t~~g----k~l~t-----------f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
++.... +++.. ...++++-..|..+-++++ +.|+.++.||+++|+...++. ||
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A---gGD~~~y~~dlE~G~i~r~~r---------GH 155 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA---GGDGVIYQVDLEDGRIQREYR---------GH 155 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe---cCCeEEEEEEecCCEEEEEEc---------CC
Confidence 764211 11111 1225788889877777777 679999999999999999886 88
Q ss_pred cceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce---------EEEEecCCCEEEEEe----EEEecC
Q 000177 1646 AYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG---------GGGFHPAGNEVIINS----EVWDLR 1705 (1922)
Q Consensus 1646 ~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V---------sVaFSPdG~~LASGS----eIWDLr 1705 (1922)
+..+ +.--.....+++++ ++||.++++++..+....+.- -.+..-+..++++|+ .+|+++
T Consensus 156 tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 156 TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEecc
Confidence 8776 44434445566776 999999999988775433211 245566778999888 499999
Q ss_pred CCeEEEEEcCCCc-eeEEEcc
Q 000177 1706 KFRLLRSVPSLDQ-TTITFNA 1725 (1922)
Q Consensus 1706 TgklL~tl~gH~~-~sVaFSP 1725 (1922)
+.++..+++-... ..+.|-.
T Consensus 236 sse~t~vfpipa~v~~v~F~~ 256 (325)
T KOG0649|consen 236 SSESTCVFPIPARVHLVDFVD 256 (325)
T ss_pred CCCceEEEecccceeEeeeec
Confidence 9888777763222 4566654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=130.68 Aligned_cols=217 Identities=16% Similarity=0.218 Sum_probs=153.7
Q ss_pred cCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC---CcEEEEec-CCcEEEe
Q 000177 1505 RDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE---TQLLLSSS-SQDVHLW 1579 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD---G~lLaSSs-DgtVkLW 1579 (1922)
.+|. -.|..+.|-| |.-.+.++|.|.++||||.++-+....|+ -.+.|++- ++||- ..+|+++. |-.|+|-
T Consensus 98 ~~Hk-y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYsh--amSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 98 NGHK-YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSH--AMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred ccce-eeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehh--hcChhhhcceEEEEecCCCcEEEE
Confidence 3577 8899999999 66689999999999999999998887775 34567776 55552 34666675 7789999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccc-----cccccCCCCc--c
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDT-----SVNLTGRGHA--Y 1647 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~-----s~~~~~~gh~--~ 1647 (1922)
|+.+ |.+-+++.|| .++.|+|...+++.. ++.||.|++||++.. .|..++... ........|. .
T Consensus 174 Di~S--Gs~sH~LsGHr~~vlaV~Wsp~~e~vLat--gsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 174 DIAS--GSFSHTLSGHRDGVLAVEWSPSSEWVLAT--GSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred eccC--CcceeeeccccCceEEEEeccCceeEEEe--cCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 9998 8899999987 679999987765443 389999999999865 455554311 1111122333 4
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcc-eeeec--cCCCceE------------EEEecCCCEEEEEeEEEecCCC
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVP-VHRFD--QFTDHGG------------GGFHPAGNEVIINSEVWDLRKF 1707 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~-I~kf~--gh~~~Vs------------VaFSPdG~~LASGSeIWDLrTg 1707 (1922)
+.++|+.++.++++++ ++|+..+|+. +..|- .|++.++ +.+-|++.-++ ++++-.+
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~la----ll~~~sg 325 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLA----LLNLLEG 325 (397)
T ss_pred eeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEE----EEEccCc
Confidence 4499999999999888 8999998753 22221 1122111 23334443332 6777788
Q ss_pred eEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1708 RLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1708 klL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
..++.+..|-. .|..|-|+=+..+++
T Consensus 326 s~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 326 SFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred eEEEeeecccceeeEEeecCchhhhhcc
Confidence 88888887754 577788877777776
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=135.85 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=128.3
Q ss_pred CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e---cCCcEEEeccCCCCCCcceEeccc-eeEEEcCCC
Q 000177 1530 TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S---SSQDVHLWNASSIAGGPMHSFEGC-KAARFSNSG 1604 (1922)
Q Consensus 1530 DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S---sDgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG 1604 (1922)
...|.+||.+..+. +.+..+...+.+. .|||||+.|+. + .+..|.+||+.+...+.+..+.++ ..+.|+|||
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~~~~~~p--~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSPQPLMSP--AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCCCceeee--EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 34789999875544 4455566778888 89999998876 3 245799999987222333445554 568999999
Q ss_pred CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEE--EcCCCcceee
Q 000177 1605 NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILW--DRRNSVPVHR 1676 (1922)
Q Consensus 1605 ~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLW--Dlrtgk~I~k 1676 (1922)
++|+.......+..|++||+.+++...... .........|+|+|+.|+..+ .|| |+.++.. ..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 988875332333469999999877644322 112233489999999887433 555 5555543 34
Q ss_pred eccCCCce-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEEc
Q 000177 1677 FDQFTDHG-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1677 f~gh~~~V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs~ 1735 (1922)
+....... ...|+|+|++|+..+ .+||+.+++.. .+. ........|+|||++|+.+..
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEc
Confidence 43333333 789999999998765 26888877643 343 222357899999999998754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-09 Score=135.52 Aligned_cols=208 Identities=12% Similarity=0.089 Sum_probs=135.6
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe--cCC--
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSH---TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS--SSQ-- 1574 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~---DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS--sDg-- 1574 (1922)
+.+..+. ..+.+.+|||||+.|+..+. +..|.+|++.+++... +......+..+ .|+|||+.|+.. .++
T Consensus 192 ~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~--~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAP--AFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCe--EECCCCCEEEEEEcCCCCc
Confidence 4445565 78999999999999887543 4579999998876433 22222234456 889999988753 244
Q ss_pred cEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1575 DVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
.|++||+.+ ++......+ +....|+|||+.|+.++.......|.++|+.++... .+. ..++......
T Consensus 268 ~I~~~d~~t--g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-------~~~~~~~~~~ 337 (429)
T PRK03629 268 NLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-------WEGSQNQDAD 337 (429)
T ss_pred EEEEEECCC--CCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-------cCCCCccCEE
Confidence 589999986 443322222 367899999999888743222224555577766543 232 0122333488
Q ss_pred EcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--------EEEecCCCeEEEEEcC
Q 000177 1652 FSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1652 FSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--------eIWDLrTgklL~tl~g 1715 (1922)
|+|+|++|+..+ .+||+.++.. ..+..........|+|||++|+..+ .+|++ ++...+.+.+
T Consensus 338 ~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~ 415 (429)
T PRK03629 338 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA 415 (429)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc
Confidence 999999987543 6789887754 3343222222688999999998887 25566 4666677776
Q ss_pred CCc--eeEEEcc
Q 000177 1716 LDQ--TTITFNA 1725 (1922)
Q Consensus 1716 H~~--~sVaFSP 1725 (1922)
|.. ...+|+|
T Consensus 416 ~~~~~~~p~Wsp 427 (429)
T PRK03629 416 TDGQVKFPAWSP 427 (429)
T ss_pred CCCCcCCcccCC
Confidence 654 6788887
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=136.43 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=125.6
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCcceEeccc-eeEEEcCCCC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGPMHSFEGC-KAARFSNSGN 1605 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~ 1605 (1922)
.+|.+||.. +...+.+..|...+.+. .|+|||+.|+..+ ...|.+||+.+.....+..+.++ .++.|+|+|+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p--~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSP--AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccc--cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC
Confidence 468999985 44445666677788888 8899999888742 34699999986222223334444 4689999999
Q ss_pred EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeee
Q 000177 1606 LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1606 ~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf 1677 (1922)
.|+.......+..|++||+.+++... +.. ........+|+|+|+.|+..+ .++|+.+++. ..+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~l 331 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTR-LTN-------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERL 331 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEE-Ccc-------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe
Confidence 87654222234579999999887543 320 111223389999999887443 3445555543 222
Q ss_pred ccCCCce-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEE
Q 000177 1678 DQFTDHG-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1678 ~gh~~~V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs 1734 (1922)
....... ...|+|+|++|+..+ .+||+.+++...-..+.......|+|+|++|+...
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEE
Confidence 2222223 789999999998754 28999887654322232336789999999988764
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-11 Score=155.71 Aligned_cols=195 Identities=16% Similarity=0.258 Sum_probs=146.6
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCc-EEEEe-c
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQ-LLLSS-S 1572 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~-lLaSS-s 1572 (1922)
+..+.++..|. +.|..+.|++.. ++||+|+.||.|.|||+++-+.-.++ ..-.+.|.+| +|+..-+ +|+++ .
T Consensus 106 ~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l--sWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 106 EEVLATKSKHT-GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL--SWNRKVSHILASGSP 182 (1049)
T ss_pred hHHHhhhcccC-CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe--ccchhhhHHhhccCC
Confidence 34456677899 999999999955 59999999999999999876554554 2246789999 6766544 45554 5
Q ss_pred CCcEEEeccCCCCCCcceEecc------ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG------CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~g 1644 (1922)
++++.|||++. .+++..+.. +..++|||++ ..+++++.+...-.|.+||+|.-. .++++ .+
T Consensus 183 sg~~~iWDlr~--~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~---------~~ 251 (1049)
T KOG0307|consen 183 SGRAVIWDLRK--KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL---------EG 251 (1049)
T ss_pred CCCceeccccC--CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh---------cc
Confidence 88999999998 566666654 2579999975 567777556666789999998532 33333 35
Q ss_pred CcceE--EEEcCCC-CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEE-EEEe-----EEEecCC
Q 000177 1645 HAYSQ--IHFSPSD-TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEV-IINS-----EVWDLRK 1706 (1922)
Q Consensus 1645 h~~~v--VaFSPdG-~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~L-ASGS-----eIWDLrT 1706 (1922)
|...+ +.|++.+ .++++++ .+|+..+++.+..|....+++ .+.|+|...-+ ++.+ .|+.+.+
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 66555 8899988 7788888 899999999999998888888 99999987744 4444 3666654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=138.80 Aligned_cols=285 Identities=15% Similarity=0.153 Sum_probs=189.4
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEe-eecCCCcEEEEec
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQS-HLSGETQLLLSSS 1572 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~-afSpDG~lLaSSs 1572 (1922)
..+++....|.+|. +.|+.|.|+..|..|++||.|..|.+||+.+++....| .||...|..-+| -|+.+..++.++.
T Consensus 129 vqr~~l~~kL~~H~-GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHK-GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred HHHhhhhhcccCCC-CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 34555566788999 99999999999999999999999999999999988877 799999988854 2333434444466
Q ss_pred CCcEEEeccCCCCCCcc-----eEecc-ceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1573 SQDVHLWNASSIAGGPM-----HSFEG-CKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l-----~tf~g-h~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
||.|++=.+... +.+. ....+ ++.++.-|+ ...|.++ +.|+.+.-+|++++....++.+..... ...-
T Consensus 208 dgqvr~s~i~~t-~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~---geD~~v~~~Dlr~~~pa~~~~cr~~~~-~~~v 282 (559)
T KOG1334|consen 208 DGQVRVSEILET-GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC---GEDAVVFHIDLRQDVPAEKFVCREADE-KERV 282 (559)
T ss_pred cCceeeeeeccc-cceecceecccccCccceeeecCCCCCccccc---ccccceeeeeeccCCccceeeeeccCC-ccce
Confidence 999988766431 2222 22223 266777775 4678888 889999999999887766654111000 0001
Q ss_pred cceEEEEcCCCC-eEeecc-----EEEEcCCC------cceeeeccCC----C--ce-EEEEecCCC-EEEEEeE--EEe
Q 000177 1646 AYSQIHFSPSDT-MLLWNG-----ILWDRRNS------VPVHRFDQFT----D--HG-GGGFHPAGN-EVIINSE--VWD 1703 (1922)
Q Consensus 1646 ~~~vVaFSPdG~-lLaSgg-----rLWDlrtg------k~I~kf~gh~----~--~V-sVaFSPdG~-~LASGSe--IWD 1703 (1922)
....++.+|... .++++| ++||.+.- .++.+|-.++ . .| +++|+.++. .+++-.+ ||=
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 123388899886 555666 89998842 2345553221 2 23 899997665 4455442 332
Q ss_pred cC----CC----------eEEEE-EcCCCc----eeE-EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEec
Q 000177 1704 LR----KF----------RLLRS-VPSLDQ----TTI-TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDA 1763 (1922)
Q Consensus 1704 Lr----Tg----------klL~t-l~gH~~----~sV-aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da 1763 (1922)
.+ .| ..++. ++||.+ ..| -|-|...|+++|+.- ..+.+|+.
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC-------------------GhIFiW~K 423 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC-------------------GHIFIWDK 423 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc-------------------ceEEEEec
Confidence 11 12 23344 788887 233 378889999998421 23456676
Q ss_pred CCCceeeeeccCCc-eEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1764 INYSDIATIPVDRC-VLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1764 ~dys~IaTidvkr~-I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
.+...|...+..+. |+++.-+|....||. ...+..|+||..
T Consensus 424 ~t~eii~~MegDr~VVNCLEpHP~~PvLAs------SGid~DVKIWTP 465 (559)
T KOG1334|consen 424 KTGEIIRFMEGDRHVVNCLEPHPHLPVLAS------SGIDHDVKIWTP 465 (559)
T ss_pred chhHHHHHhhcccceEeccCCCCCCchhhc------cCCccceeeecC
Confidence 66666666665444 778888999888883 456788999976
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-10 Score=129.48 Aligned_cols=226 Identities=15% Similarity=0.253 Sum_probs=165.2
Q ss_pred EEecCCCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEECCCC---------Cceeeec-cCCCCeeEEEeeecC
Q 000177 1502 RTCRDDAGALLTCITFLG-DSSHIAVGSHT-------KELKIFDSNSS---------SPLESCT-SHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSP-DG~lLASGS~D-------GtIkIWDl~tg---------k~l~tL~-gHss~VtsLq~afSp 1563 (1922)
++|..|. +.||.++-+| +.++|+|+-.+ ..+.||.+... +++..+. .|-+.|.|| .|.|
T Consensus 57 kvf~h~a-gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cv--ew~P 133 (370)
T KOG1007|consen 57 KVFFHHA-GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCV--EWEP 133 (370)
T ss_pred hhhhcCC-cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeE--EEcC
Confidence 4566777 9999999999 55677776553 24689998532 2334442 556689999 7899
Q ss_pred CCcEEEEecCCcEEEeccCCCCCCc-ceEecc---------ceeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1564 ETQLLLSSSSQDVHLWNASSIAGGP-MHSFEG---------CKAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1564 DG~lLaSSsDgtVkLWDl~t~~gk~-l~tf~g---------h~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
++..+++-.|..|.+|++.. +.. +..+.. .++-+|+| +|+.+++ ..|+++..||++|.++..
T Consensus 134 ns~klasm~dn~i~l~~l~e--ss~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t----t~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 134 NSDKLASMDDNNIVLWSLDE--SSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT----TSDSTLQFWDLRTMKKNN 207 (370)
T ss_pred CCCeeEEeccCceEEEEccc--CcchheeecccccccccceecccccCCCCccceEEE----eCCCcEEEEEccchhhhc
Confidence 99999998899999999987 322 222211 16778998 7888888 468999999999988887
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEe-ecc-----EEEEcCCCc-ceeeeccCCCce-EEEEecCCC-EEEEEe---
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSV-PVHRFDQFTDHG-GGGFHPAGN-EVIINS--- 1699 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk-~I~kf~gh~~~V-sVaFSPdG~-~LASGS--- 1699 (1922)
.+. ..+++.+..+.|+|+-++++ ++| +|||.|..+ ++..+.+|..++ ++.|+|-.. .|++|+
T Consensus 208 sI~------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 208 SIE------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred chh------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence 776 33566666699999987655 666 999999654 899999999999 999999754 555555
Q ss_pred --EEEecCC-----------------------------CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhh
Q 000177 1700 --EVWDLRK-----------------------------FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1700 --eIWDLrT-----------------------------gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
-+|...+ ...+.++..|.. .+++||.-..+|++....++..++
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 1443221 012345666655 799999999999998766654443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-10 Score=131.23 Aligned_cols=218 Identities=18% Similarity=0.283 Sum_probs=152.9
Q ss_pred CCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEec
Q 000177 1507 DAGALLTCITFLGD----SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLWN 1580 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPD----G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLWD 1580 (1922)
|. .....|+|+-| .-+||.|+.-|.|+|.|+.++++...+.+|...|+.| .+.|+. ++|++ |.|.+|++||
T Consensus 88 ~~-Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINei--k~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 88 HD-ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEI--KFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CC-cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhh--hcCCCCCcEEEEecCCceEEEEe
Confidence 66 77888899863 3389999999999999999999999999999999999 788875 57777 4599999999
Q ss_pred cCCCCCCcceEecc---c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc------ccccc-------
Q 000177 1581 ASSIAGGPMHSFEG---C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD------TSVNL------- 1640 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g---h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d------~s~~~------- 1640 (1922)
+++ ..|+..|-| | .++.|+++|.+|+++ +.|.++++|++...+....++. .....
T Consensus 165 I~~--~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc---GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 165 IQT--DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC---GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred ccC--CeEEEEecccccccCcEEEEEEcCCCCeeecc---CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence 998 889988865 3 789999999999999 8999999999985443222210 00000
Q ss_pred ------cCCCCcceE--EEEcCCCCeEeecc-----EEEEc-CCCc-------------ceeeeccCCCce---EEEEec
Q 000177 1641 ------TGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDR-RNSV-------------PVHRFDQFTDHG---GGGFHP 1690 (1922)
Q Consensus 1641 ------~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDl-rtgk-------------~I~kf~gh~~~V---sVaFSP 1690 (1922)
+..-|...+ +.| -|+++++-+ ..|-. +-+. .+..|+-....+ ..+|.|
T Consensus 240 ~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence 001122211 222 135666544 67766 2111 123333333333 557778
Q ss_pred CCCEEEEEeE-----EEecCCCeE------EEEEcCCCceeEEEccCCCEEEEEE
Q 000177 1691 AGNEVIINSE-----VWDLRKFRL------LRSVPSLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1691 dG~~LASGSe-----IWDLrTgkl------L~tl~gH~~~sVaFSPdG~~LaSgs 1734 (1922)
-++.||.|.. +||++...+ .+...+......+||-+|.+|+...
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC 372 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe
Confidence 8999999883 999987654 2222233337899999999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-10 Score=135.76 Aligned_cols=210 Identities=16% Similarity=0.198 Sum_probs=141.8
Q ss_pred cCCccccccceee--ecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCc---------------
Q 000177 1482 SGVHRNRRDRQFV--YSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSP--------------- 1543 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi--~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~--------------- 1543 (1922)
|...|....|+|- -....-+..|..|. .+|.++.|+| +...+++.|+||+|+.-|++++..
T Consensus 206 GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~ 284 (498)
T KOG4328|consen 206 GDKGGQVGLWNFGTQEKDKDGVYLFTPHS-GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSS 284 (498)
T ss_pred ccCCCcEEEEecCCCCCccCceEEeccCC-ccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeee
Confidence 3334444455552 22333456678899 9999999999 667999999999999888753210
Q ss_pred ------------------------------eeeeccCCCCeeEEEeeecCCC-cEEEEec-CCcEEEeccCCCCCCc---
Q 000177 1544 ------------------------------LESCTSHQAPVTLVQSHLSGET-QLLLSSS-SQDVHLWNASSIAGGP--- 1588 (1922)
Q Consensus 1544 ------------------------------l~tL~gHss~VtsLq~afSpDG-~lLaSSs-DgtVkLWDl~t~~gk~--- 1588 (1922)
...+.-|...|++| +++|.. .+|+|++ |++++|||++...++.
T Consensus 285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv--~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ 362 (498)
T KOG4328|consen 285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV--ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF 362 (498)
T ss_pred ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee--ecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence 11123367788999 788865 4666654 9999999998744433
Q ss_pred ceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECC----CCceeeeeccccccccCCCCcceEEEEcCCCCeEee
Q 000177 1589 MHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQ----TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1589 l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr----Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+.++. .++++.|||++-.|++. +.|..|+|||.. .-....++. ..+..++--....+.|.|+..+|+.
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT---~~D~~IRv~dss~~sa~~~p~~~I~--Hn~~t~RwlT~fKA~W~P~~~li~v 437 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTT---CQDNEIRVFDSSCISAKDEPLGTIP--HNNRTGRWLTPFKAAWDPDYNLIVV 437 (498)
T ss_pred eecccccceeeeeEEcCCCCceEee---ccCCceEEeecccccccCCccceee--ccCcccccccchhheeCCCccEEEE
Confidence 22222 24789999987778888 899999999984 222222332 0000000001112899999999998
Q ss_pred cc-----EEEEcCCCcceeeeccCCC-ce--EEEEecCCCEEEEEe
Q 000177 1662 NG-----ILWDRRNSVPVHRFDQFTD-HG--GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I~kf~gh~~-~V--sVaFSPdG~~LASGS 1699 (1922)
+. -++|-..++.+..+..... .| -..|||-+..+++|+
T Consensus 438 g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 438 GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccC
Confidence 87 6888888888888766655 44 468999999788777
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=131.71 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=142.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe--cCCcEEEeccCCCCCCcceE
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS--SSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS--sDgtVkLWDl~t~~gk~l~t 1591 (1922)
-++|||+|++||+.+.- .+.|-|.++-+..+.|.+ -..|..| .|..|..+++++ .|+.|.+|++.. ..-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yi--eW~ads~~ilC~~yk~~~vqvwsl~Q--pew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYI--EWKADSCHILCVAYKDPKVQVWSLVQ--PEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhhe--eeeccceeeeeeeeccceEEEEEeec--ceeEEE
Confidence 57899999999999877 778889888877666654 3456677 566788888774 499999999986 222333
Q ss_pred ec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeeccE---
Q 000177 1592 FE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGI--- 1664 (1922)
Q Consensus 1592 f~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSggr--- 1664 (1922)
+. +..++.|+|||+.|+..+ .-|-.|.+|.+.|.+....-. ..+....++|+|+|++.+..++
T Consensus 87 Ideg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~~~~~--------pK~~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGYLLPH--------PKTNVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred eccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeEEecc--------cccCceeEEECCCCceeeeeecccH
Confidence 33 347899999998777652 567889999999877654321 2344556999999999987762
Q ss_pred -----EEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeEEEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEEcc
Q 000177 1665 -----LWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSEVWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1665 -----LWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSeIWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs~~ 1736 (1922)
|..-.....++.|+..+... .+.|+|||+.|+ |||---.-.+..+. +.....+.|+|.+++|+.|+.+
T Consensus 157 kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la----Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 157 KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA----VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYD 231 (447)
T ss_pred HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE----EecchhhheeeeeeeccceeEEEeccccceEEeeccc
Confidence 11111223455565544444 899999999999 77753222222222 2333689999999999998655
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-09 Score=131.33 Aligned_cols=190 Identities=19% Similarity=0.222 Sum_probs=125.9
Q ss_pred CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCc--ceEecc-ceeEEEcC
Q 000177 1530 TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGP--MHSFEG-CKAARFSN 1602 (1922)
Q Consensus 1530 DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~--l~tf~g-h~sVaFSP 1602 (1922)
...|.+||.+ +...+.+..|...|.+. .|+|||+.|+..+ +..|.+||+.+ +.. +..+.+ .....|+|
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p--~wSpDG~~lay~s~~~g~~~i~~~dl~~--g~~~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSSLVLTP--RFSPNRQEITYMSYANGRPRVYLLDLET--GQRELVGNFPGMTFAPRFSP 255 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCCCeEee--EECCCCCEEEEEEecCCCCEEEEEECCC--CcEEEeecCCCcccCcEECC
Confidence 3478899985 44556677788889988 8999999887732 46899999987 433 223333 36789999
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcce
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPV 1674 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I 1674 (1922)
||+.|+..........|.+||+.++.... +.. .........|+|||+.|+..+ .+||+..+..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~-------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~- 326 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTD-------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP- 326 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceEE-ccC-------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-
Confidence 99987654322233458888998876533 330 112223389999999887433 5667665543
Q ss_pred eeeccCCCce-EEEEecCCCEEEEEe------E--EEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEE
Q 000177 1675 HRFDQFTDHG-GGGFHPAGNEVIINS------E--VWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1675 ~kf~gh~~~V-sVaFSPdG~~LASGS------e--IWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs 1734 (1922)
+.+..+...+ ...|+|+|++|+..+ + +||+.++. .+.+. +.....+.|+|+|++|+...
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEE
Confidence 3343333333 678999999998765 2 67775443 23332 23336899999999988764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=134.19 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=134.8
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--ecCC-
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--SSSQ- 1574 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--SsDg- 1574 (1922)
.+.+..|. ..+.+.+|+|||+.|+..+.+ ..|.+||+.+++.. .+..+.+..... .|+|||+.|+. +.++
T Consensus 196 ~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~--~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 196 PQTILRSA-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAP--SFSPDGRRLALTLSRDGN 271 (433)
T ss_pred ceEeecCC-CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCc--eECCCCCEEEEEEeCCCC
Confidence 44456666 789999999999999988744 46999999887653 333334444456 88999987754 3344
Q ss_pred -cEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1575 -DVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 -tVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
.|++||+.+ +. +..+.. ...+.|+|||++|+.++.......|.++|+.+++... +. ..+.....
T Consensus 272 ~~Iy~~d~~~--g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt-------~~g~~~~~ 340 (433)
T PRK04922 272 PEIYVMDLGS--RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT-------FQGNYNAR 340 (433)
T ss_pred ceEEEEECCC--CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee-------cCCCCccC
Confidence 699999986 43 333332 2568999999998887432222357777877765432 22 01222334
Q ss_pred EEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE--------EEecCCCeEEEEE
Q 000177 1650 IHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE--------VWDLRKFRLLRSV 1713 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe--------IWDLrTgklL~tl 1713 (1922)
.+|+|+|++|+..+ .+||+.+++.. .+..........|+|||++|+..+. +|++. +...+.+
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l 418 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL 418 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence 89999999988432 68999887654 3332222237799999999887662 45553 4444445
Q ss_pred cCCC--ceeEEEcc
Q 000177 1714 PSLD--QTTITFNA 1725 (1922)
Q Consensus 1714 ~gH~--~~sVaFSP 1725 (1922)
..+. ...++|+|
T Consensus 419 ~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 VSADGEVREPAWSP 432 (433)
T ss_pred ccCCCCCCCCccCC
Confidence 4332 25666765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=132.69 Aligned_cols=248 Identities=13% Similarity=0.182 Sum_probs=165.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
.|..++|-|||..|+.+..+ .+.|||.+.|..+.++++|...|+++ +|+.||+.+++| +|..|.+|+-+- .|...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycV--Ays~dGkrFASG~aDK~VI~W~~kl-EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCV--AYAKDGKRFASGSADKSVIIWTSKL-EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEE--EEccCCceeccCCCceeEEEecccc-cceee
Confidence 49999999999988776554 58899999999999999999999999 889999999996 599999999764 23333
Q ss_pred eEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1590 HSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1590 ~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
.+... +.|+.|+|-...+++++.. ..-+|........+ .. .......++|..||++++-+-
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLs----dFglWS~~qK~V~K-~k--------ss~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLS----DFGLWSPEQKSVSK-HK--------SSSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchh----hccccChhhhhHHh-hh--------hheeEEEeeecCCCcEEEEeccCceE
Confidence 33332 4899999999999998432 25678766433221 11 123344599999999999654
Q ss_pred EEEEcCCCcceeeec---cCCCce-EEEEecCCC-----EEEEEe-----EEEecCCCeEEEEEc--CCCceeEEEccCC
Q 000177 1664 ILWDRRNSVPVHRFD---QFTDHG-GGGFHPAGN-----EVIINS-----EVWDLRKFRLLRSVP--SLDQTTITFNARG 1727 (1922)
Q Consensus 1664 rLWDlrtgk~I~kf~---gh~~~V-sVaFSPdG~-----~LASGS-----eIWDLrTgklL~tl~--gH~~~sVaFSPdG 1727 (1922)
.+-+ .++.+--+++ |.+.+| +++|+|+.. .++... .++.+ +|+.+..-. +.+..|+.+-|+|
T Consensus 157 siRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 157 SIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred Eeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCC
Confidence 2222 3455544444 356667 999999742 333332 13333 244443222 2333799999999
Q ss_pred CEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee-ccCCceEEEEEcCCCceEEEEecCC
Q 000177 1728 DVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI-PVDRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1728 ~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi-dvkr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
.++..|..+..-. |.+-++ -.+.|+ +.+.=|+.+...|++.++++-..|.
T Consensus 235 Ey~LiGGsdk~L~-----------------~fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 235 EYILLGGSDKQLS-----------------LFTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred cEEEEccCCCceE-----------------EEeecC---eEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 9999884333211 222121 122333 2345599999999999888776443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-08 Score=120.77 Aligned_cols=283 Identities=14% Similarity=0.133 Sum_probs=176.1
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
+...+.+.+.++.... .....+.|+|||+++++.+.||.|.+||+.+++.+.++..-. ...++ ++|+||++++++
T Consensus 21 iD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i--~~s~DG~~~~v~n 96 (369)
T PF02239_consen 21 IDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGI--AVSPDGKYVYVAN 96 (369)
T ss_dssp EETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEE--EE--TTTEEEEEE
T ss_pred EECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceE--EEcCCCCEEEEEe
Confidence 3345667778787544 344567899999999999999999999999999999886433 34667 889999999885
Q ss_pred -cCCcEEEeccCCCCCCcceEecc-----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceee--eecccc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEG-----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEA--KLSDTS 1637 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~g-----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~--tL~d~s 1637 (1922)
..+++.++|.++ .+++.++.. ...+..+|....++..- -.-+.|.+.|....+.+. .+.
T Consensus 97 ~~~~~v~v~D~~t--le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vVdy~d~~~~~~~~i~--- 169 (369)
T PF02239_consen 97 YEPGTVSVIDAET--LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVVDYSDPKNLKVTTIK--- 169 (369)
T ss_dssp EETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEEETTTSSCEEEEEEE---
T ss_pred cCCCceeEecccc--ccceeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEEEEeccccccceeeec---
Confidence 389999999988 777776642 13566678777555441 334778888877654332 222
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCC----CceEEEEecC----------CCEE--
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFT----DHGGGGFHPA----------GNEV-- 1695 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~----~~VsVaFSPd----------G~~L-- 1695 (1922)
.+....-..|+|++++++.+. .++|..+++.+..++... ....-..||. +.+.
T Consensus 170 -----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 170 -----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp -------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred -----ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 122223389999999987644 689988887766554321 1222222332 2222
Q ss_pred EEEe---EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeee
Q 000177 1696 IINS---EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIAT 1771 (1922)
Q Consensus 1696 ASGS---eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaT 1771 (1922)
+++. .+||..+++.+++++.... --+..||+++++++...-+ +-...+.++|..+.+.+.+
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~---------------~~~~~v~viD~~tl~~~~~ 309 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLN---------------PDADTVQVIDKKTLKVVKT 309 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT----------------SSHT-EEEEECCGTEEEE-
T ss_pred cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCC---------------CCCceEEEEECcCcceeEE
Confidence 2222 2899999999999985444 6788899999999873211 1235688999999988888
Q ss_pred eccCCc--eEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1772 IPVDRC--VLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1772 idvkr~--I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
+..... +.++.|+++|+++.+...+..+ .+.+|+.
T Consensus 310 i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~----~i~v~D~ 346 (369)
T PF02239_consen 310 ITPGPGKRVVHMEFNPDGKEVWVSVWDGNG----AIVVYDA 346 (369)
T ss_dssp HHHHHT--EEEEEE-TTSSEEEEEEE--TT----EEEEEET
T ss_pred EeccCCCcEeccEECCCCCEEEEEEecCCC----EEEEEEC
Confidence 765444 9999999999988877544422 5666653
|
... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-09 Score=130.71 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=121.1
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCc--ceEeccc-eeEEEcCC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGP--MHSFEGC-KAARFSNS 1603 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~--l~tf~gh-~sVaFSPD 1603 (1922)
..|.+||. .+.....+..+...+.+. .|+|||+.|+..+ ...|.+||+.+ ++. +..+.++ ....|+||
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p--~wSPDG~~la~~s~~~~~~~I~~~dl~~--g~~~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISP--AWSPDGTKLAYVSFESKKPVVYVHDLAT--GRRRVVANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccc--eEcCCCCEEEEEEccCCCcEEEEEECCC--CCEEEeecCCCCccceEECCC
Confidence 46777776 455555666777888888 8899999887642 24599999987 443 2234443 67899999
Q ss_pred CCEEEEeecCCCCCeEEEE--ECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcC--CCcc
Q 000177 1604 GNLFAALPTETSDRGILLY--DIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRR--NSVP 1673 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIrIW--DlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlr--tgk~ 1673 (1922)
|+.|+... +.++...|| |+.++. ...+.. .........|+|||+.|+..+ .+|.+. +++.
T Consensus 251 G~~la~~~--~~~g~~~Iy~~d~~~~~-~~~lt~-------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 251 GRTLAVAL--SRDGNSQIYTVNADGSG-LRRLTQ-------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred CCEEEEEE--ccCCCceEEEEECCCCC-cEECCC-------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 99887542 445555555 555444 333430 111122378999999887433 677654 4432
Q ss_pred eeeeccCCC-ceEEEEecCCCEEEEEe--------EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEc
Q 000177 1674 VHRFDQFTD-HGGGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1674 I~kf~gh~~-~VsVaFSPdG~~LASGS--------eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~ 1735 (1922)
..+..... .....|+|+|++|+..+ .+||+.+++......+.....+.|+|+|++|+.+..
T Consensus 321 -~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 321 -QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred -EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEe
Confidence 22221122 22689999999998765 288998876543333323368899999999998754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=132.23 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=157.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeE---EEe----eecCCCcEEEEecCCcEEEe
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTL---VQS----HLSGETQLLLSSSSQDVHLW 1579 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vts---Lq~----afSpDG~lLaSSsDgtVkLW 1579 (1922)
|. ..|.||.|+.+...+.+++.+..++-||+.+.. ...+.-....|.. +.. .-.....++++++||.+.|.
T Consensus 13 ~~-e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NS-EKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cc-eeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 55 678899999888777777766666666664332 1111111111111 100 00113357788899999988
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
+-. ++....+..| .+-.|+|+|.-+++. +.||.|+||.- +|-.-.++. ..+..+.+++|.|+
T Consensus 91 ~k~---~rVE~sv~AH~~A~~~gRW~~dGtgLlt~---GEDG~iKiWSr-sGMLRStl~-------Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 91 NKS---ARVERSISAHAAAISSGRWSPDGAGLLTA---GEDGVIKIWSR-SGMLRSTVV-------QNEESIRCARWAPN 156 (737)
T ss_pred ccc---chhhhhhhhhhhhhhhcccCCCCceeeee---cCCceEEEEec-cchHHHHHh-------hcCceeEEEEECCC
Confidence 765 4555666665 677899999999999 99999999974 343333332 13566778999999
Q ss_pred CCeEe-ecc---EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC--ceeEEE
Q 000177 1656 DTMLL-WNG---ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD--QTTITF 1723 (1922)
Q Consensus 1656 G~lLa-Sgg---rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~--~~sVaF 1723 (1922)
.+-++ +.+ .|=-+.....+-++..|.+.+ ++.|+|..+.+++|+ +|||-. |..+.+-..|+ .++|+|
T Consensus 157 S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 157 SNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAF 235 (737)
T ss_pred CCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeee
Confidence 87666 444 444455555566789999988 999999999999999 599986 66666555454 499999
Q ss_pred ccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1724 NARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
+|+. .++.++ .+ +-|+.+| --..|+.++|+++|+.+++..
T Consensus 236 npd~-~~~v~S-~n---------t~R~~~p--------------------~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 236 NPEK-DYLLWS-YN---------TARFSSP--------------------RVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred cccc-ceeeee-ee---------eeeecCC--------------------CccceEEEEEcCCCceeeccc
Confidence 9993 333331 11 1111111 123588999999998887543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=120.59 Aligned_cols=136 Identities=15% Similarity=0.248 Sum_probs=99.9
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEECCC-CCceeeec-cCCCCeeEEEeeecCCCcEEEE--e-cCCcEEE
Q 000177 1514 CITFLGDSSHIAVGSH----------TKELKIFDSNS-SSPLESCT-SHQAPVTLVQSHLSGETQLLLS--S-SSQDVHL 1578 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~----------DGtIkIWDl~t-gk~l~tL~-gHss~VtsLq~afSpDG~lLaS--S-sDgtVkL 1578 (1922)
.+.|+++|++|+.-.. -|...||-++. +.....+. .+.++|.++ +|+|+|+.++. | .+..|.|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~--~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDV--AWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEE--EECcCCCEEEEEEccCCcccEE
Confidence 5778999987654332 23456666632 33344443 234579999 88999987655 3 3779999
Q ss_pred eccCCCCCCcceEecc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1579 WNASSIAGGPMHSFEG--CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
||++ ++.+.++.. .+.+.|+|+|++|++++.+...|.|.+||+++.+.+.++. ......++|+|+|
T Consensus 88 yd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---------~~~~t~~~WsPdG 155 (194)
T PF08662_consen 88 YDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---------HSDATDVEWSPDG 155 (194)
T ss_pred EcCc---ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---------cCcEEEEEEcCCC
Confidence 9997 566777754 3789999999999999776667889999999988887765 1223449999999
Q ss_pred CeEeecc
Q 000177 1657 TMLLWNG 1663 (1922)
Q Consensus 1657 ~lLaSgg 1663 (1922)
+++++..
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9999776
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-09 Score=130.30 Aligned_cols=184 Identities=11% Similarity=0.126 Sum_probs=118.9
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--ecCC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--SSSQ 1574 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--SsDg 1574 (1922)
..+.+..|. ..+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+... .|+|||+.|+. +.++
T Consensus 187 ~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~--~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 187 NAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAP--AWSPDGRTLAVALSRDG 262 (427)
T ss_pred CceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccce--EECCCCCEEEEEEccCC
Confidence 334455677 789999999999999887753 359999998887543 33233445566 89999987764 3477
Q ss_pred cEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEE--ECCCCceeeeeccccccccCCCCcce
Q 000177 1575 DVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLY--DIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIW--DlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
...||.+... +.....+.. .....|+|||++|+.++.. ++...|| |+.+++...... .+....
T Consensus 263 ~~~Iy~~d~~-~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~--~g~~~Iy~~~~~~g~~~~lt~--------~g~~~~ 331 (427)
T PRK02889 263 NSQIYTVNAD-GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDR--GGAPQIYRMPASGGAAQRVTF--------TGSYNT 331 (427)
T ss_pred CceEEEEECC-CCCcEECCCCCCCCcCeEEcCCCCEEEEEecC--CCCcEEEEEECCCCceEEEec--------CCCCcC
Confidence 7666655431 222344432 2568899999998876432 3444555 445544322111 122222
Q ss_pred EEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1649 QIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
...|+|+|++|+..+ .+||+.+++... +..........|+|||++|+..+
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEE
Confidence 378999999988433 789998876433 32222223789999999998877
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-10 Score=129.69 Aligned_cols=207 Identities=14% Similarity=0.209 Sum_probs=141.4
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeee---ccCCCCeeEEEeeecCCC
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESC---TSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL---~gHss~VtsLq~afSpDG 1565 (1922)
.+.+.+...+....+++|. +.|+.+.|.|+ .++|+++|+|.+||+||+++..++..| .||.+.|.++ .|+++|
T Consensus 117 IrVid~~~~~~~~~~~ghG-~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv--D~~~~g 193 (385)
T KOG1034|consen 117 IRVIDVVSGQCSKNYRGHG-GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV--DFSLDG 193 (385)
T ss_pred EEEEecchhhhccceeccC-ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE--EEcCCC
Confidence 3445566777788899999 99999999994 579999999999999999999999887 7899999999 889999
Q ss_pred cEEEEe-cCCcEEEeccCCCCC----CcceE---------e-------cc------c----eeEEEcCCCCEEEEeecCC
Q 000177 1566 QLLLSS-SSQDVHLWNASSIAG----GPMHS---------F-------EG------C----KAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1566 ~lLaSS-sDgtVkLWDl~t~~g----k~l~t---------f-------~g------h----~sVaFSPDG~~LaSgS~~S 1614 (1922)
.+|++| .|.++++|++..... ++... | .. | -|+.|- |+++++= +
T Consensus 194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk---s 268 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK---S 268 (385)
T ss_pred CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec---c
Confidence 999995 599999999984100 00000 1 00 1 123332 5777776 6
Q ss_pred CCCeEEEEEC-CCCceeeeeccccccccC------CCCcceE--EEEcCCCCeEeecc-----EEEEcCCCccee--eec
Q 000177 1615 SDRGILLYDI-QTYQLEAKLSDTSVNLTG------RGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVH--RFD 1678 (1922)
Q Consensus 1615 ~DgtIrIWDl-rTgk~i~tL~d~s~~~~~------~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~--kf~ 1678 (1922)
-++.|..|-. +-++.+....++....+. .....+- .+|.|-+++|+.+. .+||++...+.+ ++.
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~ 348 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT 348 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence 6789999987 323333323222211110 1112222 67788889888766 899999876531 221
Q ss_pred cC--CCce-EEEEecCCCEEEEEeE---EEec
Q 000177 1679 QF--TDHG-GGGFHPAGNEVIINSE---VWDL 1704 (1922)
Q Consensus 1679 gh--~~~V-sVaFSPdG~~LASGSe---IWDL 1704 (1922)
.+ ...| ..+|+.+|.+|+.... ||-.
T Consensus 349 ~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 349 HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 11 1233 7899999998887763 5543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.1e-09 Score=128.63 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=125.5
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e-c
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSH---TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S-S 1572 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~---DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S-s 1572 (1922)
....+.+..|. ..+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+..+.+.+... .|+|||+.|+. . .
T Consensus 191 g~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~--~~SPDG~~la~~~~~ 266 (435)
T PRK05137 191 GANVRYLTDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAP--RFSPDGRKVVMSLSQ 266 (435)
T ss_pred CCCcEEEecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCc--EECCCCCEEEEEEec
Confidence 34445567787 88999999999999988764 46899999988765 3455566666777 88999987754 3 3
Q ss_pred CC--cEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1573 SQ--DVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1573 Dg--tVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++ .|.+||+.+ +. ...+.. .....|+|||++|+..+.......|.+||+.+++.. .+.. ....
T Consensus 267 ~g~~~Iy~~d~~~--~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-------~~~~ 335 (435)
T PRK05137 267 GGNTDIYTMDLRS--GT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-------GGGR 335 (435)
T ss_pred CCCceEEEEECCC--Cc-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-------CCCc
Confidence 44 477788876 33 333432 256899999999988754444457889998766543 3320 1122
Q ss_pred ceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1647 YSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
.....|+|+|++|+... .+||+..+. ...+......-...|+|||++|+..+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEE
Confidence 23378999999988532 577765443 33333222222789999999887644
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=132.37 Aligned_cols=87 Identities=22% Similarity=0.404 Sum_probs=74.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceE
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~t 1591 (1922)
.+++|+++|..|++|+.||++|||++.+...+.....|...|.++ .|+|||++|++ +.| ..+||++++ +.++.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL--~FS~dgk~lasig~d-~~~VW~~~~--g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDL--DFSPDGKFLASIGAD-SARVWSVNT--GAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccc--eeCCCCcEEEEecCC-ceEEEEecc--Cchhhh
Confidence 689999999999999999999999998888888889999999999 99999999999 678 999999998 655555
Q ss_pred ecc------ceeEEEcCCC
Q 000177 1592 FEG------CKAARFSNSG 1604 (1922)
Q Consensus 1592 f~g------h~sVaFSPDG 1604 (1922)
... ...|.|+.++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDN 241 (398)
T ss_pred cCCcccchhhhhceecccC
Confidence 432 2456777665
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-09 Score=124.07 Aligned_cols=195 Identities=19% Similarity=0.268 Sum_probs=131.6
Q ss_pred eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eEeecc-----EEEEc
Q 000177 1596 KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWNG-----ILWDR 1668 (1922)
Q Consensus 1596 ~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSgg-----rLWDl 1668 (1922)
..++|+| +...|++| +.|.+|.||++-.+.....+..+.....+|...+..+.|+|.-. .|++.| .+||+
T Consensus 85 LDi~w~PfnD~vIASg---SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIASG---SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred cccccCccCCceeecC---CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 5689999 56678887 89999999999877665555434433333333344499999875 444555 89999
Q ss_pred CCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEEEccCch
Q 000177 1669 RNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAILRRNLE 1739 (1922)
Q Consensus 1669 rtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSgs~~d~~ 1739 (1922)
.+|..+.+++ |.+.| ++.|+-||.++++.+ +|||.++++++..-.+|.. ..+.|-.+|.++.+|...-++
T Consensus 162 ~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 162 GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred cCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 9999888887 88877 999999999999999 4999999999998877776 688999999966666433222
Q ss_pred hhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1740 DVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1740 dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
.-.....+..+..| -.+..+| ....|.---|+++-..+-++. ..|+.+|.||+..
T Consensus 241 Rq~aLwdp~nl~eP--~~~~elD-----------tSnGvl~PFyD~dt~ivYl~G-----KGD~~IRYyEit~ 295 (472)
T KOG0303|consen 241 RQIALWDPNNLEEP--IALQELD-----------TSNGVLLPFYDPDTSIVYLCG-----KGDSSIRYFEITN 295 (472)
T ss_pred cceeccCcccccCc--ceeEEec-----------cCCceEEeeecCCCCEEEEEe-----cCCcceEEEEecC
Confidence 21111111122222 1233333 334455555666666666653 2346777777643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-08 Score=117.75 Aligned_cols=215 Identities=15% Similarity=0.271 Sum_probs=143.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCc-EEEEecCCcEEEeccCCCC--
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQ-LLLSSSSQDVHLWNASSIA-- 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~-lLaSSsDgtVkLWDl~t~~-- 1585 (1922)
..+..++|++.-..++++..|-+|+|||-.. ++...++ .....|+++ +|-|.+. -|+.+.-+-|.+|......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtcl--awRPlsaselavgCr~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCL--AWRPLSASELAVGCRAGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEE--EeccCCcceeeeeecceeEEEEcCccccc
Confidence 4577889998777889999999999999765 4444443 345689999 6666543 4555677779999875410
Q ss_pred CCc----------ceEeccc---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-ceEEE
Q 000177 1586 GGP----------MHSFEGC---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA-YSQIH 1651 (1922)
Q Consensus 1586 gk~----------l~tf~gh---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~-~~vVa 1651 (1922)
+.. +....+| +++.|.+||..+++++. .|..|.|||..++.++.... .+-. ...+.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~--gsssi~iWdpdtg~~~pL~~--------~glgg~slLk 245 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF--GSSSIMIWDPDTGQKIPLIP--------KGLGGFSLLK 245 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc--CcceEEEEcCCCCCcccccc--------cCCCceeeEE
Confidence 111 1122233 78999999999999854 46889999999988765442 1222 33499
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCC----C----------
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRK----F---------- 1707 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrT----g---------- 1707 (1922)
|||||.+++... ++|......--.++.-..+.+ ..+|+|+|.+|+... .+|.+.- .
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCccccee
Confidence 999999998665 899544332222333334466 899999999876655 3554321 0
Q ss_pred -eEEEEEc-----------CCCceeEEEccCCCEEEEEEccC
Q 000177 1708 -RLLRSVP-----------SLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1708 -klL~tl~-----------gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
.++..++ +....+++|.|.|.+|++.++..
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0111111 11225999999999999987644
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-08 Score=121.57 Aligned_cols=192 Identities=12% Similarity=0.133 Sum_probs=122.5
Q ss_pred cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-C--CcEEEeccCCCCCCcceEeccc-eeEEEcCCCCE
Q 000177 1532 ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-S--QDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNL 1606 (1922)
Q Consensus 1532 tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-D--gtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~ 1606 (1922)
.|.++|.+.++ ...+..|...+... .|+|||+.|+. +. + ..|.+||+.+...+.+..+.++ ....|+|||++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p--~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSP--RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeee--eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCE
Confidence 47777876444 45555667788888 88999998876 42 2 3689999987222223334443 46899999998
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeec
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFD 1678 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~ 1678 (1922)
|+.......+..|.+||+.+++... +.. .........|+|+|+.|+..+ .+||+.+++......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt~-------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSR-VTN-------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-ccc-------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 8755333334578999999876543 330 111222378999999876433 556776776432221
Q ss_pred cCCCceEEEEecCCCEEEEEe--------EEEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEEc
Q 000177 1679 QFTDHGGGGFHPAGNEVIINS--------EVWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1679 gh~~~VsVaFSPdG~~LASGS--------eIWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs~ 1735 (1922)
.........|+|+|++|+..+ .+||+.+++.. .+. ........|+|+|++|+.+..
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEe
Confidence 111122678999999998766 16788877543 332 222246799999999987743
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=133.56 Aligned_cols=177 Identities=15% Similarity=0.232 Sum_probs=130.0
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEe
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLW 1579 (1922)
..|+.+.|.| |...|++++.||.|+||.+..+ .+...+.+|...|++| .|+|-. .+|++ +.|.+|+||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~sl--RfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSL--RFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEE--EecchhhhHhhhhhccceeeee
Confidence 5699999999 8889999999999999999654 3456789999999999 777742 34555 679999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeeccccccccCCCCcceEEEEcC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
|+.+ .+....|.+| ..++|+|+|+.+++. +.||+|++|..+++.. ++.-+ ...+.....+.|.-
T Consensus 706 Dl~~--~~~~~~l~gHtdqIf~~AWSpdGr~~AtV---cKDg~~rVy~Prs~e~pv~Eg~------gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 706 DLAN--AKLYSRLVGHTDQIFGIAWSPDGRRIATV---CKDGTLRVYEPRSREQPVYEGK------GPVGTRGARILWAC 774 (1012)
T ss_pred ehhh--hhhhheeccCcCceeEEEECCCCcceeee---ecCceEEEeCCCCCCCccccCC------CCccCcceeEEEEe
Confidence 9998 6777788876 689999999999999 8999999999987543 21111 11233444599999
Q ss_pred CCCeEeecc---------EEEEcCC--Ccceeee--ccCCCceEEEEecCCCEEEEEe
Q 000177 1655 SDTMLLWNG---------ILWDRRN--SVPVHRF--DQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1655 dG~lLaSgg---------rLWDlrt--gk~I~kf--~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+|++++..| .+||..+ +.++.+. +......--.|.+|...|...+
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 999999777 5777664 2344432 2222222345666766555554
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=130.19 Aligned_cols=177 Identities=12% Similarity=0.146 Sum_probs=134.6
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcE
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDV 1576 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtV 1576 (1922)
..+.-+.+..|. +.|.|-.|+|||.-|+|.+.||.||||. .+|....++-....+|+|+ +|.|+..-++.|..+.+
T Consensus 93 ~~rVE~sv~AH~-~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~--~W~p~S~~vl~c~g~h~ 168 (737)
T KOG1524|consen 93 SARVERSISAHA-AAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA--RWAPNSNSIVFCQGGHI 168 (737)
T ss_pred cchhhhhhhhhh-hhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE--EECCCCCceEEecCCeE
Confidence 445556677899 9999999999999999999999999998 4676666676678899999 78999888888877777
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.|=.+.. ...+..++.| .++.|++..+.|++| +.|-..+|||... ..+.+- ..+.|.+.+++|
T Consensus 169 ~IKpL~~--n~k~i~WkAHDGiiL~~~W~~~s~lI~sg---GED~kfKvWD~~G-~~Lf~S-------~~~ey~ITSva~ 235 (737)
T KOG1524|consen 169 SIKPLAA--NSKIIRWRAHDGLVLSLSWSTQSNIIASG---GEDFRFKIWDAQG-ANLFTS-------AAEEYAITSVAF 235 (737)
T ss_pred EEeeccc--ccceeEEeccCcEEEEeecCccccceeec---CCceeEEeecccC-cccccC-------Chhccceeeeee
Confidence 7766654 3334455554 789999999999999 8999999999874 332221 236788888999
Q ss_pred cCCCCeEeeccEEEEcCCCcceeeeccCC-Cce-EEEEecCCCEEEEEe
Q 000177 1653 SPSDTMLLWNGILWDRRNSVPVHRFDQFT-DHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1653 SPdG~lLaSggrLWDlrtgk~I~kf~gh~-~~V-sVaFSPdG~~LASGS 1699 (1922)
+|+ +.++.++ ..+- +|...+ +.| .++|||||..++.|+
T Consensus 236 npd-~~~~v~S----~nt~----R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 236 NPE-KDYLLWS----YNTA----RFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ccc-cceeeee----eeee----eecCCCccceEEEEEcCCCceeeccc
Confidence 999 5555443 2221 133332 344 899999999998887
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-08 Score=116.48 Aligned_cols=209 Identities=20% Similarity=0.284 Sum_probs=151.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec--CCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS--SQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss--DgtVkLWDl~t~~g 1586 (1922)
..+..+.|+.+...|..|+.||. ++|+...... .+.--.+.+.-|+.-|+.. +++- +. -+.+++++++. .
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk--~ 78 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK--K 78 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc--C
Confidence 45777789999999999999996 8888765544 2222244555555466543 5544 43 34589999886 4
Q ss_pred CcceE--ec-cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC--CCeEee
Q 000177 1587 GPMHS--FE-GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS--DTMLLW 1661 (1922)
Q Consensus 1587 k~l~t--f~-gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd--G~lLaS 1661 (1922)
..+.. |. .+.+|.++. ++|+++ -. ..|.|||+++.+.+.++... ..+....++++|+ +.+++.
T Consensus 79 ~~ICe~~fpt~IL~VrmNr--~RLvV~---Le-e~IyIydI~~MklLhTI~t~------~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNR--KRLVVC---LE-ESIYIYDIKDMKLLHTIETT------PPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred ceEEEEecCCceEEEEEcc--ceEEEE---Ec-ccEEEEecccceeehhhhcc------CCCccceEeeccCCCCceEEe
Confidence 43433 32 246677664 455555 22 34999999999999988621 1244445555554 458884
Q ss_pred cc-------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCCc----eeEEE
Q 000177 1662 NG-------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLDQ----TTITF 1723 (1922)
Q Consensus 1662 gg-------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~~----~sVaF 1723 (1922)
-+ .|||+.+-+++..+..|.+.+ +++|+|+|.+||++| +|+.+.+|+.+..+.-... .+++|
T Consensus 147 p~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred cCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 33 999999999999999999999 999999999999999 5999999999998873332 69999
Q ss_pred ccCCCEEEEEEccC
Q 000177 1724 NARGDVIYAILRRN 1737 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d 1737 (1922)
+|++++|++++..+
T Consensus 227 s~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 227 SPDSQFLAASSNTE 240 (391)
T ss_pred CCCCCeEEEecCCC
Confidence 99999999886543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.8e-08 Score=123.50 Aligned_cols=275 Identities=13% Similarity=0.168 Sum_probs=174.5
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--C--CceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--S--SPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--g--k~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
.|. -.++|.++||+++++++|..||.|.+|.-.. + .....+.=|...|+++ +|+++|.+|++| ..+.+.+|.
T Consensus 203 ~Ht-f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L--~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHT-FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL--SFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhc-ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee--EEecCCceEeecccceEEEEEe
Confidence 477 6689999999999999999999999997433 1 1224456688999999 999999999995 599999999
Q ss_pred cCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccc----ccCCCCcceEEEEcCC
Q 000177 1581 ASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVN----LTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~----~~~~gh~~~vVaFSPd 1655 (1922)
+.+...+.+-++.+ +.++.++||+.+.+.. ..|+.|.+....+-....++...... ......-...++++|.
T Consensus 280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~---~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLV---LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred ecCCCcccccccCCeeEEEEEcCCCCeEEEE---ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 99843333444444 5889999999998888 77999999877655444444311111 0001111223889995
Q ss_pred CCeEeecc-----EEEEcCCCcceeeecc-----CCC------ce-EEEEecCCCEEEEEe---------------EEEe
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQ-----FTD------HG-GGGFHPAGNEVIINS---------------EVWD 1703 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~g-----h~~------~V-sVaFSPdG~~LASGS---------------eIWD 1703 (1922)
-+.++-++ .+||+-+.+.+++++. +.+ .+ .+.++-+|.++++.- ++|.
T Consensus 357 ~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 357 TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 55454444 8999998877776632 111 12 567778899999887 3664
Q ss_pred cC----CCeEEEEEc-CCCc---eeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee--
Q 000177 1704 LR----KFRLLRSVP-SLDQ---TTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI-- 1772 (1922)
Q Consensus 1704 Lr----TgklL~tl~-gH~~---~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi-- 1772 (1922)
.. ++.+...+. .|.. ..+.++|... ..++++ .+..|++|--.+.+.+...
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-------------------~dg~~KiW~~~~~~n~~k~~s 497 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-------------------VDGDFKIWVFTDDSNIYKKSS 497 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-------------------cCCeEEEEEEecccccCcCcc
Confidence 43 233333332 2333 1222222222 222222 2334555544332222111
Q ss_pred ---------ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1773 ---------PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1773 ---------dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
-.+.++...+|+.+|+.+++. .+.++.+|+-+.
T Consensus 498 ~W~c~~i~sy~k~~i~a~~fs~dGslla~s-------~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 498 NWTCKAIGSYHKTPITALCFSQDGSLLAVS-------FDDTITIWDYDT 539 (792)
T ss_pred ceEEeeeeccccCcccchhhcCCCcEEEEe-------cCCEEEEecCCC
Confidence 136789999999999988865 345677887654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-08 Score=127.35 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=154.2
Q ss_pred ceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCc--eee----eccCCCCeeEEEeeecCCC-cEEE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSP--LES----CTSHQAPVTLVQSHLSGET-QLLL 1569 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~--l~t----L~gHss~VtsLq~afSpDG-~lLa 1569 (1922)
..|-.+|... ..|+|++|+| +..+|+.|..+|.|.+||+..+.. ... ...|..+|+.+.|.-++.+ .++.
T Consensus 233 ~~Pe~~~~~~--s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 233 NTPELVLESP--SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCceEEEecC--CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence 4555656443 6899999999 778999999999999999987655 222 2568899999966444433 3555
Q ss_pred EecCCcEEEeccCCCCCCcce-----Ee-------c---cceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceee--
Q 000177 1570 SSSSQDVHLWNASSIAGGPMH-----SF-------E---GCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEA-- 1631 (1922)
Q Consensus 1570 SSsDgtVkLWDl~t~~gk~l~-----tf-------~---gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~-- 1631 (1922)
+|.||.|+.|+++.. ..+.. .. . +.++++|.+ +...|+.| +.+|.|.--.-.......
T Consensus 311 ~ssDG~i~~W~~~~l-~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG---Te~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 311 LSSDGSICSWDTDML-SLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG---TEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred EecCCcEeeeecccc-ccchhhcccccccccccccccccceeeEeeccCCCceEEEE---cCCcEEEEEeccCCcccccc
Confidence 578999999988752 11111 11 1 137899999 56778888 778887663322211111
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEe-ecc----EEEEcC-CCcceeeeccCCCce-EEEEecCCCEEEEEe-----
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG----ILWDRR-NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg----rLWDlr-tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----- 1699 (1922)
.++ +......+...+.++.++|-+..++ +++ +||.-. ...++..|..+...+ +++|||.-.-+....
T Consensus 387 ~~~-~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 387 SYK-GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred ccc-ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 111 0111111233445589999885544 555 999988 677888888888877 999999876544443
Q ss_pred -EEEecCC--CeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1700 -EVWDLRK--FRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -eIWDLrT--gklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
.|||+.. ..++.+.+-... +.+.|++.|++|+.|.
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEec
Confidence 4999975 344555543333 7999999999999983
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.2e-09 Score=118.62 Aligned_cols=185 Identities=13% Similarity=0.228 Sum_probs=129.5
Q ss_pred CceeeEEec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-eeee-----ccCCCCeeEEEeeecCCCcEEE
Q 000177 1497 RFRPWRTCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-LESC-----TSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1497 rfrpirtLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-l~tL-----~gHss~VtsLq~afSpDG~lLa 1569 (1922)
.+..+..|. .|- +.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+ .+|....++-.|+.+.+++.++
T Consensus 111 tlE~v~~Ldteav-g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 111 TLECVASLDTEAV-GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred hhhHhhcCCHHHh-CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 344444454 466 7899999999999998876 88999999987765 3322 2355666777444445899999
Q ss_pred EecCCcEEEeccCCCCCCcceEecc-----ceeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccC
Q 000177 1570 SSSSQDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGN-LFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1570 SSsDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~ 1642 (1922)
+..|+++..||+++ .++...+.. ++.+.|+|+-+ +|++| +.|+.|+|||.+.-+ .++.+. .
T Consensus 189 tt~d~tl~~~D~RT--~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~---gDdgyvriWD~R~tk~pv~el~-------~ 256 (370)
T KOG1007|consen 189 TTSDSTLQFWDLRT--MKKNNSIEDAHGQRVRDLDFNPNKQHILVTC---GDDGYVRIWDTRKTKFPVQELP-------G 256 (370)
T ss_pred EeCCCcEEEEEccc--hhhhcchhhhhcceeeeccCCCCceEEEEEc---CCCccEEEEeccCCCccccccC-------C
Confidence 99999999999998 555555543 37899999865 56666 889999999998643 444443 3
Q ss_pred CCCcceEEEEcCCC-CeEeecc-----EEEEcCCC-----------------------------cceeeeccCCCce-EE
Q 000177 1643 RGHAYSQIHFSPSD-TMLLWNG-----ILWDRRNS-----------------------------VPVHRFDQFTDHG-GG 1686 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG-~lLaSgg-----rLWDlrtg-----------------------------k~I~kf~gh~~~V-sV 1686 (1922)
+.|=++.+.|+|.- ++|+++| .+|...+- ..+.+|+.|.+.| ++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 44555669999964 6677777 55554321 1234666777777 77
Q ss_pred EEecCCCEE
Q 000177 1687 GFHPAGNEV 1695 (1922)
Q Consensus 1687 aFSPdG~~L 1695 (1922)
+||.-..++
T Consensus 337 aWSsadPWi 345 (370)
T KOG1007|consen 337 AWSSADPWI 345 (370)
T ss_pred eeccCCCee
Confidence 777665554
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-09 Score=122.11 Aligned_cols=184 Identities=20% Similarity=0.276 Sum_probs=127.0
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC--CCcEEEE-ecCCcEEEeccCCCCCCcceEeccc---
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG--ETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC--- 1595 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp--DG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh--- 1595 (1922)
..+|++-..|+|++||..+++.+..|++|...++.+ .|.. ....+.+ ++||+|++||++.........+..+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~v--rf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGV--RFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccce--EEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 579999999999999999999999999999999999 4544 3455555 5699999999998433444555544
Q ss_pred --eeEEEcCCCCEEEEeecC-CCCCeEEEEECCCCce-eeeeccccccccCCCCcceEEEEcCCC-CeEeecc-----EE
Q 000177 1596 --KAARFSNSGNLFAALPTE-TSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG-----IL 1665 (1922)
Q Consensus 1596 --~sVaFSPDG~~LaSgS~~-S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg-----rL 1665 (1922)
.+++.+-.++.+++|..- ..+-.|.+||+|..+. +..+. ..|...+..+.|+|.+ ++|++++ .|
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh------hhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 344444456667666221 2467799999998766 55554 1233344559999987 5666776 89
Q ss_pred EEcCCCc----ceeeeccCCCce-EEEEecCC-CEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1666 WDRRNSV----PVHRFDQFTDHG-GGGFHPAG-NEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1666 WDlrtgk----~I~kf~gh~~~V-sVaFSPdG-~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
||+.... +++++ .+...| ++.|+.++ +.|.+-+ .+|++..+.....+.
T Consensus 193 fD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred eecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 9988542 23333 444556 88999888 2344444 499998876544443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=117.06 Aligned_cols=217 Identities=17% Similarity=0.320 Sum_probs=148.8
Q ss_pred CCCCCCEEEEEEcCCCC-----EEEEEeCCCcEEEEECCCC--Cc--eeee-----ccCCCCeeEEEeeecC-CCcEEEE
Q 000177 1506 DDAGALLTCITFLGDSS-----HIAVGSHTKELKIFDSNSS--SP--LESC-----TSHQAPVTLVQSHLSG-ETQLLLS 1570 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~-----lLASGS~DGtIkIWDl~tg--k~--l~tL-----~gHss~VtsLq~afSp-DG~lLaS 1570 (1922)
.|. -+++.+-|.|+.. +|||.+ -.+++|.+... +. ...+ ..|..++++. .|+. +-++|.+
T Consensus 94 d~~-YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSF--DWne~dp~~igt 168 (364)
T KOG0290|consen 94 DHP-YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSF--DWNEVDPNLIGT 168 (364)
T ss_pred CCC-CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccc--ccccCCcceeEe
Confidence 577 8999999999763 566654 47999998632 11 1111 3456788888 4443 4567777
Q ss_pred ec-CCcEEEeccCCC-CCCcceEecc----ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeec-cccccccC
Q 000177 1571 SS-SQDVHLWNASSI-AGGPMHSFEG----CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLS-DTSVNLTG 1642 (1922)
Q Consensus 1571 Ss-DgtVkLWDl~t~-~gk~l~tf~g----h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~-d~s~~~~~ 1642 (1922)
|+ |.+..|||+++. .+.....+-. +..++|...+ +.|+++ +.||.|++||++.-..-..+. ++.
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv---gaDGSvRmFDLR~leHSTIIYE~p~----- 240 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV---GADGSVRMFDLRSLEHSTIIYEDPS----- 240 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe---cCCCcEEEEEecccccceEEecCCC-----
Confidence 66 999999999982 1222334433 4889999965 578888 899999999999755433332 111
Q ss_pred CCCcceEEEEcCCCC-eEee---cc---EEEEcCCC-cceeeeccCCCce-EEEEecCC-CEEEEEeE-----EEecCCC
Q 000177 1643 RGHAYSQIHFSPSDT-MLLW---NG---ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAG-NEVIINSE-----VWDLRKF 1707 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~-lLaS---gg---rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG-~~LASGSe-----IWDLrTg 1707 (1922)
.....-.++|++++. ++++ ++ .+.|+|.. .++.++.+|...| .++|.|.. ..|++++. |||+.+-
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 012333488888774 4443 23 89999975 5899999999999 99999974 68888883 9999752
Q ss_pred e------EEEEE-cCCCceeEEEcc-CCCEEEEEEc
Q 000177 1708 R------LLRSV-PSLDQTTITFNA-RGDVIYAILR 1735 (1922)
Q Consensus 1708 k------lL~tl-~gH~~~sVaFSP-dG~~LaSgs~ 1735 (1922)
- ++-.+ .++..+.+.|++ .+++|+.++.
T Consensus 321 ~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 321 PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 1 12222 345558999996 5678887743
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-08 Score=122.36 Aligned_cols=191 Identities=17% Similarity=0.226 Sum_probs=119.8
Q ss_pred cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-c-CC--cEEEeccCCCCCCcceEeccc-eeEEEcCCCCE
Q 000177 1532 ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-S-SQ--DVHLWNASSIAGGPMHSFEGC-KAARFSNSGNL 1606 (1922)
Q Consensus 1532 tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-s-Dg--tVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~ 1606 (1922)
.|.++|.+..+. +.+..+...+.+. .|+|||+.|+.. . ++ .|.+||+.+...+.+..+.++ ....|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p--~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSP--AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCc--eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence 567777654433 4555566778888 889999988763 2 33 588889876212223334443 56899999998
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceee-e
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHR-F 1677 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~k-f 1677 (1922)
|+..........|.+||+.+++... +.. ........+|+|+|+.|+..+ .++|+.+++.... +
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~-lt~-------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTR-ITR-------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEE-Ccc-------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence 8765322223358888998876533 320 112223388999999887433 5567766654322 2
Q ss_pred ccCCCceEEEEecCCCEEEEEe------EE--EecCCCeEEEEEcCC-CceeEEEccCCCEEEEEEc
Q 000177 1678 DQFTDHGGGGFHPAGNEVIINS------EV--WDLRKFRLLRSVPSL-DQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1678 ~gh~~~VsVaFSPdG~~LASGS------eI--WDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs~ 1735 (1922)
.+.. .....|+|+|++|+..+ +| +|+.+++.. .+... ......|+|+|++|+....
T Consensus 348 ~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 348 EGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEe
Confidence 2222 23679999999988765 24 577776543 23322 2246689999999887643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-08 Score=121.86 Aligned_cols=207 Identities=10% Similarity=0.075 Sum_probs=129.8
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e-cCCc-
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHT-K--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S-SSQD- 1575 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~D-G--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S-sDgt- 1575 (1922)
+.+..+. ..+.+..|||||++|+..+.+ + .|.+||+.+++... +.......... .|+|||+.|+. . .++.
T Consensus 211 ~~l~~~~-~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~--~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 211 QMLLRSP-EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAP--RFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eEeecCC-CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCe--eECCCCCEEEEEEeCCCCe
Confidence 3445555 678899999999998876643 2 58899998876532 22112233455 88999997765 3 3554
Q ss_pred -EEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1576 -VHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1576 -VkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
|.+||+.+ ++ +..+.. .....|+|||++|+..+.......|.++|+.+++...... .++.....
T Consensus 287 ~Iy~~dl~t--g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--------~g~~~~~~ 355 (448)
T PRK04792 287 EIYVVDIAT--KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--------EGEQNLGG 355 (448)
T ss_pred EEEEEECCC--CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--------CCCCCcCe
Confidence 77778876 43 233322 2668999999998877543344567888888776533211 12223337
Q ss_pred EEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE--------EEecCCCeEEEEEc
Q 000177 1651 HFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE--------VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1651 aFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe--------IWDLrTgklL~tl~ 1714 (1922)
+|+|+|++|+..+ .++|+.+++.. .+..........|+|||++|+..+. +++. +++..+.++
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~ 433 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP 433 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc
Confidence 8999999887543 44677777542 2322211225689999999887661 3454 355555555
Q ss_pred CCCc--eeEEEcc
Q 000177 1715 SLDQ--TTITFNA 1725 (1922)
Q Consensus 1715 gH~~--~sVaFSP 1725 (1922)
.+.. ...+|+|
T Consensus 434 ~~~g~~~~p~Wsp 446 (448)
T PRK04792 434 AGQGEVKSPAWSP 446 (448)
T ss_pred CCCCCcCCCccCC
Confidence 4322 5667776
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=113.82 Aligned_cols=132 Identities=20% Similarity=0.344 Sum_probs=94.8
Q ss_pred eEEEeeecCCCcEEEE-ec---CC-------cEEEeccCCCCCCcceEe--c---cceeEEEcCCCCEEEEeecCCCCCe
Q 000177 1555 TLVQSHLSGETQLLLS-SS---SQ-------DVHLWNASSIAGGPMHSF--E---GCKAARFSNSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaS-Ss---Dg-------tVkLWDl~t~~gk~l~tf--~---gh~sVaFSPDG~~LaSgS~~S~Dgt 1618 (1922)
..+.+.|+++|.+|+. .. |. ...||-++.. ..++..+ . .+..++|+|+|+.|+... +..++.
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~ 84 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK-NIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAK 84 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC-CCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcc
Confidence 3444488999988876 21 22 3555655331 2233332 1 168999999999887652 245679
Q ss_pred EEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEec
Q 000177 1619 ILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHP 1690 (1922)
Q Consensus 1619 IrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSP 1690 (1922)
|.+||++ ++.+.++. ....+.+.|+|+|++|+.+| .+||+++.+.+.++. |.....+.|+|
T Consensus 85 v~lyd~~-~~~i~~~~---------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~~~t~~~WsP 153 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFG---------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HSDATDVEWSP 153 (194)
T ss_pred cEEEcCc-ccEeEeec---------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cCcEEEEEEcC
Confidence 9999997 66666664 34566799999999999765 799999988888775 33455999999
Q ss_pred CCCEEEEEe
Q 000177 1691 AGNEVIINS 1699 (1922)
Q Consensus 1691 dG~~LASGS 1699 (1922)
+|++|++++
T Consensus 154 dGr~~~ta~ 162 (194)
T PF08662_consen 154 DGRYLATAT 162 (194)
T ss_pred CCCEEEEEE
Confidence 999999987
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.4e-08 Score=118.80 Aligned_cols=192 Identities=19% Similarity=0.247 Sum_probs=124.8
Q ss_pred CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCc--ceEecc-ceeEEEcC
Q 000177 1530 TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGP--MHSFEG-CKAARFSN 1602 (1922)
Q Consensus 1530 DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~--l~tf~g-h~sVaFSP 1602 (1922)
...|.++|... ...+.+..+...+... .|+|||++|+... ...|++||+.+ ++. +..+.+ ..++.|+|
T Consensus 169 ~~~l~~~d~~g-~~~~~l~~~~~~~~~p--~~Spdg~~la~~~~~~~~~~i~v~d~~~--g~~~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDG-ANPQTITRSREPILSP--AWSPDGQKLAYVSFESGKPEIYVQDLAT--GQREKVASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCC-CCCEEeecCCCceecc--cCCCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEeecCCCCccceEECC
Confidence 34677888753 3445566677778888 8999999988742 24799999987 432 222333 25689999
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcce
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPV 1674 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I 1674 (1922)
+|+.|+.......+..|++||+.+++...... .........|+|+|+.|+..+ .+||+.+++.
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~- 314 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV- 314 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCC--------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 99988765333334569999998876433221 111122368999999877433 5567666653
Q ss_pred eeeccCCCce-EEEEecCCCEEEEEe------E--EEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEcc
Q 000177 1675 HRFDQFTDHG-GGGFHPAGNEVIINS------E--VWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1675 ~kf~gh~~~V-sVaFSPdG~~LASGS------e--IWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~ 1736 (1922)
..+..+.... ...|+|+|++|+..+ + +||+.++.. ..+.... .....|+|+|++|+.....
T Consensus 315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeC
Confidence 3343333333 789999999998876 2 778876543 3333222 2567899999999887543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-09 Score=128.89 Aligned_cols=204 Identities=15% Similarity=0.232 Sum_probs=166.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t 1591 (1922)
-+.+.|+.+|++|+.|+.-|.|-.+|+.+++....+.. ...|.++ .|-.+.++++......+.|||-. |..++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv--~~LHneq~~AVAQK~y~yvYD~~---GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDV--TFLHNEQFFAVAQKKYVYVYDNN---GTELHC 205 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhh--hhhcchHHHHhhhhceEEEecCC---CcEEee
Confidence 45688999999999999999999999999988777653 4668888 66778889999989999999986 455555
Q ss_pred ec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1592 FE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1592 f~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
++ .+..+.|-|..-.|+++ +..|.++.-|+.+|+.+..+.. ......+++-+|-+-.+-.+.
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~---~~~G~L~Y~DVS~GklVa~~~t-------~~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAA---SEAGFLKYQDVSTGKLVASIRT-------GAGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred hhhcCchhhhcccchhheeeec---ccCCceEEEeechhhhhHHHHc-------cCCccchhhcCCccceEEEcCCCceE
Confidence 54 45789999998888887 7889999999999999887751 122334477777777666555
Q ss_pred EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC-CCceeEEEccCCCEEE
Q 000177 1664 ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS-LDQTTITFNARGDVIY 1731 (1922)
Q Consensus 1664 rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g-H~~~sVaFSPdG~~La 1731 (1922)
.+|...+..++.++..|.+.+ ++++.++|.|+++.+ +|||++++..+.++.. |....++||..|-..+
T Consensus 276 SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~ 350 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLAL 350 (545)
T ss_pred EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceee
Confidence 899999999999999999999 999999999999999 6999999988877765 5558899998874433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=128.11 Aligned_cols=184 Identities=18% Similarity=0.221 Sum_probs=139.2
Q ss_pred eeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCc--e----eeeccCCCCeeEEEeeecCCC-cEEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSP--L----ESCTSHQAPVTLVQSHLSGET-QLLLS 1570 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~--l----~tL~gHss~VtsLq~afSpDG-~lLaS 1570 (1922)
+.+..|.+|. +.|+.+.|+| +..+|+|||.|..||||.+..|.. + ..+.+..-.|-++ .|+|.. .++++
T Consensus 70 r~i~~l~~H~-d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l--~fHpTaDgil~s 146 (1012)
T KOG1445|consen 70 RDIGILAAHG-DQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECL--RFHPTADGILAS 146 (1012)
T ss_pred cccceeeccc-ceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEe--ecccCcCceEEe
Confidence 3455677899 9999999999 667999999999999999975422 1 2233345567788 566643 46777
Q ss_pred ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCC
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh 1645 (1922)
+.-++++|||+.+ ++.+..+.+| .+..|+.||+.+++. ..|+.|+|||.++ +..+++.. +|
T Consensus 147 ~a~g~v~i~D~st--qk~~~el~~h~d~vQSa~WseDG~llats---cKdkqirifDPRa~~~piQ~te---------~H 212 (1012)
T KOG1445|consen 147 GAHGSVYITDIST--QKTAVELSGHTDKVQSADWSEDGKLLATS---CKDKQIRIFDPRASMEPIQTTE---------GH 212 (1012)
T ss_pred ccCceEEEEEccc--CceeecccCCchhhhccccccCCceEeee---cCCcceEEeCCccCCCcccccc---------cc
Confidence 8899999999998 8888888886 678999999999998 8999999999986 34444443 45
Q ss_pred cce---EEEEcCCCCeEeecc---------EEEEcCCC-cceeeeccC--CCceEEEEecCCCEEEEEe
Q 000177 1646 AYS---QIHFSPSDTMLLWNG---------ILWDRRNS-VPVHRFDQF--TDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1646 ~~~---vVaFSPdG~lLaSgg---------rLWDlrtg-k~I~kf~gh--~~~VsVaFSPdG~~LASGS 1699 (1922)
... .+.|--+-..|++.| ++||.+.. .+++++.-. .+..--.|.||.+.|+.++
T Consensus 213 ~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG 281 (1012)
T KOG1445|consen 213 GGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG 281 (1012)
T ss_pred ccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec
Confidence 443 388887777788777 89999864 566665433 2333567899988888777
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=125.40 Aligned_cols=183 Identities=13% Similarity=0.184 Sum_probs=128.3
Q ss_pred eeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecc---ceeEEEcCCCC--EEEEeecCCCCCe
Q 000177 1545 ESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGN--LFAALPTETSDRG 1618 (1922)
Q Consensus 1545 ~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~--~LaSgS~~S~Dgt 1618 (1922)
..|.||++.|.+| +..|.|.+|++|+ ||+|+||.+.+ +.|++++.- +.||+|+|.++ .|+++ ....
T Consensus 394 lvyrGHtg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA----~~~~ 465 (733)
T KOG0650|consen 394 LVYRGHTGLVRSI--SVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQFDSEIRSVAWNPLSDLCVLAVA----VGEC 465 (733)
T ss_pred eeEeccCCeEEEE--EecCCcceeeecCCCCcEEEEEeec--ceEEEEEeecceeEEEEecCCCCceeEEEE----ecCc
Confidence 4578999999999 8899999999965 99999999999 999987653 59999999765 33333 2223
Q ss_pred EEEEECCCCcee---------eeec---cc-----cccc-------------cCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1619 ILLYDIQTYQLE---------AKLS---DT-----SVNL-------------TGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1619 IrIWDlrTgk~i---------~tL~---d~-----s~~~-------------~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
+.|-+..-|..+ .... .+ .+.. ..+...+..+.|+..|.||++..
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 444443323111 1110 00 0000 00222334499999999999654
Q ss_pred ---EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1664 ---ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.|+++...+...-|....+.+ ++.|||...++++++ +|||+-...+++.+..... ..++.+|.|..|+.+
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 788888776666676655666 999999999999998 5999988777666553333 689999999999988
Q ss_pred Ec
Q 000177 1734 LR 1735 (1922)
Q Consensus 1734 s~ 1735 (1922)
+.
T Consensus 626 s~ 627 (733)
T KOG0650|consen 626 SY 627 (733)
T ss_pred cC
Confidence 53
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.6e-08 Score=120.45 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=121.4
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e-cCC-
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S-SSQ- 1574 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S-sDg- 1574 (1922)
.+.+..|. ..+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+... .|+|||+.|+. . .++
T Consensus 191 ~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~--~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAP--AWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCe--EECCCCCEEEEEEccCCC
Confidence 44555666 788999999999999877644 368999998886533 32223334455 88999998764 3 244
Q ss_pred -cEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1575 -DVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 -tVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
.|.+||+.+ +. ...+.. .....|+|||+.|+..+.......|.+||+.+++...... .+.....
T Consensus 267 ~~Iy~~d~~~--~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--------~~~~~~~ 335 (430)
T PRK00178 267 PEIYVMDLAS--RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--------VGNYNAR 335 (430)
T ss_pred ceEEEEECCC--CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--------CCCCccc
Confidence 688889886 33 233332 2567899999988877443344578888988877533221 1222234
Q ss_pred EEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1650 IHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
..|+|+|++|+... .+||+.+++. ..+..........|+|||++|+..+
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEE
Confidence 78999999987433 5788887754 3332211222679999999998766
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-08 Score=108.21 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=136.2
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc------e--eeeccCC-----CCeeEEEeeecCC-C
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP------L--ESCTSHQ-----APVTLVQSHLSGE-T 1565 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~------l--~tL~gHs-----s~VtsLq~afSpD-G 1565 (1922)
++..+++|. ++|+.++|. ..+|++|+. |.|+=|..+.... + .....|. ..|+++ ...|. +
T Consensus 54 ~iv~eqahd-gpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam--~ldP~en 127 (325)
T KOG0649|consen 54 KIVPEQAHD-GPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAM--WLDPSEN 127 (325)
T ss_pred ceeeccccC-CCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCcccee--EeccCCC
Confidence 455668999 999999998 457777775 9999998753221 1 1112233 356777 55654 5
Q ss_pred cEEEEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1566 QLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1566 ~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
.+|.++.|+.++-||+++ ++..++|+|| +++.--.....+++| +.||+++|||.+|++++..+..-.-...
T Consensus 128 Si~~AgGD~~~y~~dlE~--G~i~r~~rGHtDYvH~vv~R~~~~qilsG---~EDGtvRvWd~kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLED--GRIQREYRGHTDYVHSVVGRNANGQILSG---AEDGTVRVWDTKTQKHVSMIEPYKNPNL 202 (325)
T ss_pred cEEEecCCeEEEEEEecC--CEEEEEEcCCcceeeeeeecccCcceeec---CCCccEEEEeccccceeEEeccccChhh
Confidence 566678999999999998 8889999998 455553334557888 8999999999999999998863211111
Q ss_pred CCC-CcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1642 GRG-HAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1642 ~~g-h~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
.+. ...++.+..-+..+++.++ .+|.+++..+...|.-....--+.|-. ..+++++ .-|.+. |.+-.
T Consensus 203 lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a 279 (325)
T KOG0649|consen 203 LRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQA 279 (325)
T ss_pred cCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeec-cEEEE
Confidence 122 2344567777888999888 899999998887775433322566654 3455554 256553 44444
Q ss_pred EEc
Q 000177 1712 SVP 1714 (1922)
Q Consensus 1712 tl~ 1714 (1922)
.++
T Consensus 280 ~ip 282 (325)
T KOG0649|consen 280 NIP 282 (325)
T ss_pred ecc
Confidence 444
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=118.47 Aligned_cols=234 Identities=14% Similarity=0.193 Sum_probs=152.1
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCcee--eeccCC-CCeeEEEeeecCC
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSSPLE--SCTSHQ-APVTLVQSHLSGE 1564 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk~l~--tL~gHs-s~VtsLq~afSpD 1564 (1922)
.+-|...+++.+..|++|. ..++.++|.. .+..+.+|+.||+|++||+.+..... .+.+|. .+-.++ ..+-.
T Consensus 52 v~lyd~~tg~~l~~fk~~~-~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~l--d~nck 128 (376)
T KOG1188|consen 52 VRLYDKGTGQLLEEFKGPP-ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICL--DLNCK 128 (376)
T ss_pred EEEEeccchhhhheecCCC-CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEe--eccCc
Confidence 3445566777888899998 8899999987 46689999999999999998776544 446665 344555 55557
Q ss_pred CcEEEEe-----cCCcEEEeccCCCCCCcceEecc-----ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1565 TQLLLSS-----SSQDVHLWNASSIAGGPMHSFEG-----CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1565 G~lLaSS-----sDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
++++++| ++-.|.+||++. ..+++..+.. ++++.||| +.++|++| +-||.|.|||+........+
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~-~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG---SvDGLvnlfD~~~d~EeDaL 204 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRS-EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG---SVDGLVNLFDTKKDNEEDAL 204 (376)
T ss_pred CCeEEeccccccCceEEEEEEecc-ccchhhhhhhhccCcceeEEecCCCCCeEEee---cccceEEeeecCCCcchhhH
Confidence 7888886 367899999997 2333555532 48999999 56899998 99999999999864321111
Q ss_pred ccccccccCCCCcceEEEEcCCC--CeEeecc----EEEEcCCCcceeeeccCCC------------ceEEEEec-CCCE
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSD--TMLLWNG----ILWDRRNSVPVHRFDQFTD------------HGGGGFHP-AGNE 1694 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG--~lLaSgg----rLWDlrtgk~I~kf~gh~~------------~VsVaFSP-dG~~ 1694 (1922)
. ....++..+..+.|..++ ++..-.. .+|++..+.+...+....- .+--..+| ++..
T Consensus 205 ~----~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 205 L----HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred H----HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 1 111134445558898887 4332111 8999999887666543311 11112223 2333
Q ss_pred EEEEe------E---EEecCCC---eEEEEEcCCCc---eeEEEccCCCEEEEEE
Q 000177 1695 VIINS------E---VWDLRKF---RLLRSVPSLDQ---TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1695 LASGS------e---IWDLrTg---klL~tl~gH~~---~sVaFSPdG~~LaSgs 1734 (1922)
.++++ . +-+..++ +.+..+.++.. .++.|...+.+++++.
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG 335 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG 335 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence 33333 1 2233333 33444555333 6888888899999984
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=117.00 Aligned_cols=183 Identities=13% Similarity=0.126 Sum_probs=123.1
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-C--
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-S-- 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-D-- 1573 (1922)
.+.+..|. ..+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.++ .|+|||+.|+. .+ +
T Consensus 182 ~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~--~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAP--AFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccce--EECCCCCEEEEEECCCCC
Confidence 45555666 678999999999999887754 479999998876533 33455566667 88999987654 32 3
Q ss_pred CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
..|++||+.+ +. ...+.. .....|+|+|++|+.++.......|.+||+.+++...... .+.....
T Consensus 258 ~~i~~~d~~~--~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~--------~~~~~~~ 326 (417)
T TIGR02800 258 PDIYVMDLDG--KQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF--------RGGYNAS 326 (417)
T ss_pred ccEEEEECCC--CC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--------CCCCccC
Confidence 4688999876 33 222322 2467899999998876443334478888988766433221 1233334
Q ss_pred EEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1650 IHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
..|+|+|++++..+ .+||+.++.. ..+..........|+|+|++|+..+
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEE
Confidence 88999999888543 6788877543 3332222223678999999998776
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=117.06 Aligned_cols=192 Identities=20% Similarity=0.325 Sum_probs=133.6
Q ss_pred CCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCC-----------------------------------ceeee-ccCC
Q 000177 1510 ALLTCITFLGDSS--HIAVGSHTKELKIFDSNSSS-----------------------------------PLESC-TSHQ 1551 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~--lLASGS~DGtIkIWDl~tgk-----------------------------------~l~tL-~gHs 1551 (1922)
..|..+.|.++++ .++..+.|.+|++|.+.... +.+.+ .+|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4578899998665 67888899999999874211 11233 5789
Q ss_pred CCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE--ecc---------ceeEEEcCC-CCEEEEeecCCCCCeE
Q 000177 1552 APVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS--FEG---------CKAARFSNS-GNLFAALPTETSDRGI 1619 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t--f~g---------h~sVaFSPD-G~~LaSgS~~S~DgtI 1619 (1922)
.-|++| +++.|...+++++|=.|.||++.... +.... ++. +++..|||. .+.|+.. +..|+|
T Consensus 165 yhiNSI--S~NsD~Et~lSADdLRINLWnlei~d-~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS---SSKGtI 238 (433)
T KOG1354|consen 165 YHINSI--SVNSDKETFLSADDLRINLWNLEIID-QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS---SSKGTI 238 (433)
T ss_pred eEeeee--eecCccceEeeccceeeeeccccccC-CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe---cCCCcE
Confidence 999999 89999999999999999999997621 11111 111 378999995 5667766 778999
Q ss_pred EEEECCCCceee----eec---cccccccCCC--CcceEEEEcCCCCeEeecc----EEEEcC-CCcceeeeccCC----
Q 000177 1620 LLYDIQTYQLEA----KLS---DTSVNLTGRG--HAYSQIHFSPSDTMLLWNG----ILWDRR-NSVPVHRFDQFT---- 1681 (1922)
Q Consensus 1620 rIWDlrTgk~i~----tL~---d~s~~~~~~g--h~~~vVaFSPdG~lLaSgg----rLWDlr-tgk~I~kf~gh~---- 1681 (1922)
++.|++...... .+. ++.....+.+ ..+..+.|+++|+++++-. ++||+. ..+++.+++-|.
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHH
Confidence 999999533211 111 1111100000 1122399999999999888 999995 567888887653
Q ss_pred --------Cce----EEEEecCCCEEEEEe-----EEEecCCC
Q 000177 1682 --------DHG----GGGFHPAGNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1682 --------~~V----sVaFSPdG~~LASGS-----eIWDLrTg 1707 (1922)
+.| -++|+-++.++++|+ +++++..|
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 223 689999999999999 57775544
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-07 Score=109.65 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=181.1
Q ss_pred CEEEEEEcCCCCEEEE-------EeC---CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEec
Q 000177 1511 LLTCITFLGDSSHIAV-------GSH---TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWN 1580 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLAS-------GS~---DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWD 1580 (1922)
.++++.|||.|++|.| +.. .-.+++|++.++.....+......-+++ .|+.|..+.+--..+.|++|+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~--qfs~dEsl~arlv~nev~f~~ 152 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVP--QFSIDESLAARLVSNEVQFYD 152 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCccc--ccccchhhhhhhhcceEEEEe
Confidence 4789999999999875 111 2357899999966555554333333677 778887766555677899999
Q ss_pred cCCCCCCcceEe--ccceeEEEcCCC--CEEEEe--ecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1581 ASSIAGGPMHSF--EGCKAARFSNSG--NLFAAL--PTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1581 l~t~~gk~l~tf--~gh~sVaFSPDG--~~LaSg--S~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
... .....+.+ .++....++|.+ .++++= ..++.-..++||-......-..+. ...+-....-.+.|++
T Consensus 153 ~~~-f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a----~ksFFkadkvqm~WN~ 227 (566)
T KOG2315|consen 153 LGS-FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA----NKSFFKADKVQMKWNK 227 (566)
T ss_pred cCC-ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh----hccccccceeEEEecc
Confidence 976 23333444 345778888863 233321 123456789999876322211111 1111112222388888
Q ss_pred CCCeEe--ecc---------------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-------EEEecCCCeE
Q 000177 1655 SDTMLL--WNG---------------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-------EVWDLRKFRL 1709 (1922)
Q Consensus 1655 dG~lLa--Sgg---------------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-------eIWDLrTgkl 1709 (1922)
-|.-|+ +.+ ++.++....+.-.+.+ .++| ++.|+|+|+.+++.- .|+|++ +.+
T Consensus 228 ~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~ 305 (566)
T KOG2315|consen 228 LGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP 305 (566)
T ss_pred CCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence 776443 111 5555552233333322 4566 999999998777665 499997 889
Q ss_pred EEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCce
Q 000177 1710 LRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSF 1789 (1922)
Q Consensus 1710 L~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~ 1789 (1922)
+..++....+++-|||.|++|+.+...| +...+.+||..+++.|+.++.... .-+.|+|+|.+
T Consensus 306 v~df~egpRN~~~fnp~g~ii~lAGFGN----------------L~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~ 368 (566)
T KOG2315|consen 306 VFDFPEGPRNTAFFNPHGNIILLAGFGN----------------LPGDMEVWDVPNRKLIAKFKAANT-TVFEWSPDGEY 368 (566)
T ss_pred eEeCCCCCccceEECCCCCEEEEeecCC----------------CCCceEEEeccchhhccccccCCc-eEEEEcCCCcE
Confidence 9999877779999999999999775444 456788999999999999887544 34789999999
Q ss_pred EEEEecCCCCCccceEEEEEecC
Q 000177 1790 VGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+.+..-...--.|+.++||...-
T Consensus 369 flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 369 FLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEEeccccEEecCCeEEEEecC
Confidence 88775332233467788987643
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-07 Score=111.28 Aligned_cols=275 Identities=13% Similarity=0.148 Sum_probs=181.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCCceeeecc--CCCCeeEEEeeecCCCcEEEEec
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHT-----------KELKIFDSNSSSPLESCTS--HQAPVTLVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~D-----------GtIkIWDl~tgk~l~tL~g--Hss~VtsLq~afSpDG~lLaSSs 1572 (1922)
.|. .|..+.|||+.+||+|=|.. ..++|||+.+|...++|.. ....++.+ |.||-|+++++.-.
T Consensus 248 ~Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~-frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 248 YHP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPI-FRWSHDDKYFARMT 324 (698)
T ss_pred cCC--CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccce-EEeccCCceeEEec
Confidence 365 58999999999999997632 4689999999999998876 45566666 48999999999866
Q ss_pred CCcEEEeccCCCCCCcc----eEeccceeEEEcCCCCEEEEeecCCCC--CeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1573 SQDVHLWNASSIAGGPM----HSFEGCKAARFSNSGNLFAALPTETSD--RGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l----~tf~gh~sVaFSPDG~~LaSgS~~S~D--gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
-.+|.||+..+ ..++ ..+.|+....|+|.++.|+.=.....+ ..+.+-.+-+++.+.+-. .-+.
T Consensus 325 ~~sisIyEtps--f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------lfnV 394 (698)
T KOG2314|consen 325 GNSISIYETPS--FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------LFNV 394 (698)
T ss_pred cceEEEEecCc--eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------ceee
Confidence 67889998765 2211 234577889999999888765322221 346666777766665543 0122
Q ss_pred ce-EEEEcCCCCeEeec----------c-----EEEEcCCCc-ceeeeccCCCceEEEEecCCCEEEEEe--------EE
Q 000177 1647 YS-QIHFSPSDTMLLWN----------G-----ILWDRRNSV-PVHRFDQFTDHGGGGFHPAGNEVIINS--------EV 1701 (1922)
Q Consensus 1647 ~~-vVaFSPdG~lLaSg----------g-----rLWDlrtgk-~I~kf~gh~~~VsVaFSPdG~~LASGS--------eI 1701 (1922)
.. .+.|-.+|.+|..- | .|+.++... ++....-....+..+|-|.|+.+++-+ .+
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsf 474 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSF 474 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeE
Confidence 22 28888888888722 2 455555443 444444334444889999998776655 37
Q ss_pred EecCC----CeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC--CCceeeeeccC
Q 000177 1702 WDLRK----FRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI--NYSDIATIPVD 1775 (1922)
Q Consensus 1702 WDLrT----gklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~--dys~IaTidvk 1775 (1922)
|.+.+ .+++..+.....+.|.|+|.|++++.+.... ....+..+|.. +++.++..+ .
T Consensus 475 Y~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s----------------~~g~l~F~D~~~a~~k~~~~~e-h 537 (698)
T KOG2314|consen 475 YAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS----------------RRGDLEFYDTDYADLKDTASPE-H 537 (698)
T ss_pred EEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc----------------cccceEEEecchhhhhhccCcc-c
Confidence 77662 3456666654448999999999999873211 22345556544 344333322 3
Q ss_pred CceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1776 RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1776 r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
.....+.|+|.|+|+.....-..-..+..-+||..
T Consensus 538 ~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 538 FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred cccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 34678899999999876653333344566777765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-08 Score=112.42 Aligned_cols=274 Identities=13% Similarity=0.115 Sum_probs=174.7
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEEecCCcEEE
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLSSSSQDVHL 1578 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaSSsDgtVkL 1578 (1922)
|..+|++|. +.|+|+.|..++. |++|..-|.|++|++++......+. .|...|+.+ ...|+++++.-+.|..+.+
T Consensus 6 P~fvLRp~~-~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~l--q~~p~d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHS-SSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNL--QSIPNDSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEecccc-chheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeece--eecCCcchhhcCCCceEEE
Confidence 455788999 9999999998775 9999999999999999998888887 678899999 5567766666699999999
Q ss_pred eccCCCCCCcceEeccceeEEEcC-----CCC----EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1579 WNASSIAGGPMHSFEGCKAARFSN-----SGN----LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~gh~sVaFSP-----DG~----~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
|++.-.....++++- .+++.|.+ .++ .++.-+ .+.|. +++-|......+....++. .+....+
T Consensus 82 w~ia~s~~i~i~Si~-~nslgFCrfSl~~~~k~~eqll~yp~-rgsde-~h~~D~g~~tqv~i~dd~~-----~~Klgsv 153 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIV-VNSLGFCRFSLVKKPKNSEQLLEYPS-RGSDE-THKQDGGDTTQVQIADDSE-----RSKLGSV 153 (323)
T ss_pred EEccCcceEEEeeee-ccccccccceeccCCCcchhheecCC-cccch-hhhhccCccceeEccCchh-----ccccCce
Confidence 999751111122221 14444433 221 122211 11222 3333433322222222111 1233333
Q ss_pred EEEc---CCC-CeEeecc------EEEEcCCC----------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1650 IHFS---PSD-TMLLWNG------ILWDRRNS----------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1650 VaFS---PdG-~lLaSgg------rLWDlrtg----------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
+++. .++ ..++..| .+||+.++ +.+..+..|.+.+ ++.|.+.-..=++|+ -.|+
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 4444 123 3444444 89999997 3344455677777 888887655555555 1565
Q ss_pred cCC--CeE----EEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CC
Q 000177 1704 LRK--FRL----LRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DR 1776 (1922)
Q Consensus 1704 LrT--gkl----L~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr 1776 (1922)
+.. +.+ ..+++......+.+-||+++++++. ++..+|++.-.+..+++.... +.
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-------------------WD~RiRVyswrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-------------------WDHRIRVYSWRTLNPLAVLKYHSA 294 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecc-------------------cCCcEEEEEeccCCchhhhhhhhc
Confidence 542 221 2233333337899999999999873 345577888788888887766 45
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
.|.+++|+|+-..+|.. .+|+.+.+|++
T Consensus 295 gvn~vAfspd~~lmAaa------skD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPDCELMAAA------SKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCCCchhhhc------cCCceEEeeec
Confidence 69999999998877744 45678888864
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-09 Score=132.94 Aligned_cols=199 Identities=19% Similarity=0.357 Sum_probs=143.3
Q ss_pred cccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1488 RRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1488 r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
+.++.|...+.....+++||. +.|+.++.+.+..+++++|.|..|++|-+.++.++..+.||++.|++| +|+|--
T Consensus 212 ~lvKiwS~et~~~lAs~rGhs-~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai--afsP~~-- 286 (1113)
T KOG0644|consen 212 RLVKIWSMETARCLASCRGHS-GDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI--AFSPRA-- 286 (1113)
T ss_pred ceeeeeeccchhhhccCCCCc-cccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee--ccCccc--
Confidence 445555566777888999999 999999999999999999999999999999999999999999999999 788864
Q ss_pred EEEecCCcEEEeccCCCC------------CCcceE--ec--------c--------c--eeEEEcCCCCEEEEeecC--
Q 000177 1568 LLSSSSQDVHLWNASSIA------------GGPMHS--FE--------G--------C--KAARFSNSGNLFAALPTE-- 1613 (1922)
Q Consensus 1568 LaSSsDgtVkLWDl~t~~------------gk~l~t--f~--------g--------h--~sVaFSPDG~~LaSgS~~-- 1613 (1922)
.++.||++++||.+-.. +..+.. |. + | ..++|..+.-.|++.+.+
T Consensus 287 -sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~ 365 (1113)
T KOG0644|consen 287 -SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS 365 (1113)
T ss_pred -cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccc
Confidence 55779999999998200 000000 00 0 0 122333333333332111
Q ss_pred ------CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ecc-----EEEEcCCCcceeeec-cC
Q 000177 1614 ------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSVPVHRFD-QF 1680 (1922)
Q Consensus 1614 ------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk~I~kf~-gh 1680 (1922)
-.+..+++|++-+|+..+.+. ++.+...++.|+|-+..++ +.| .|||+-.|.+++.+. +|
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~-------ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh 438 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLM-------GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH 438 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhc-------ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc
Confidence 245667888888887776654 3445566699999887776 444 899999999887765 44
Q ss_pred CCceEEEEecCCCEEEEEe
Q 000177 1681 TDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1681 ~~~VsVaFSPdG~~LASGS 1699 (1922)
...+...||++|..++..-
T Consensus 439 ~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 439 GKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred ceeeccccCCCCceEecCC
Confidence 4455899999998877655
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=112.53 Aligned_cols=249 Identities=16% Similarity=0.171 Sum_probs=176.9
Q ss_pred CCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCceee------eccCCCCeeEEEeeecCCCcEEEEecCCcEEEecc
Q 000177 1510 ALLTCITFLGDSS--HIAVGSHTKELKIFDSNSSSPLES------CTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~--lLASGS~DGtIkIWDl~tgk~l~t------L~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl 1581 (1922)
..|+.++|..+++ .|.-.+.|..+.++.+..+.+... ....+.+|..+ .. .|+.++++-++|.+.+|..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl--~~-~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGL--KL-ADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccch--hh-cCCEEEEEecCCcEEEEec
Confidence 5678888886655 555555777788877766554433 34456777777 33 2666666668999999999
Q ss_pred CCCC--CCcceEec---cceeEEEcCCCCEEE-EeecCCCC--CeEEEEECCCCceeeeeccccccccCCCCcceE----
Q 000177 1582 SSIA--GGPMHSFE---GCKAARFSNSGNLFA-ALPTETSD--RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ---- 1649 (1922)
Q Consensus 1582 ~t~~--gk~l~tf~---gh~sVaFSPDG~~La-SgS~~S~D--gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v---- 1649 (1922)
..+. ..++..+. +...+.-++....|+ +| +.. ..++|||+.+.+.+.+-+ +..+...+-.+++
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~G---Gke~~n~lkiwdle~~~qiw~aK--NvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATG---GKENINELKIWDLEQSKQIWSAK--NVPNDRLGLRVPVWITD 207 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecC---chhcccceeeeecccceeeeecc--CCCCccccceeeeeecc
Confidence 8422 22333332 335566666544444 45 666 789999999886555443 3332223333333
Q ss_pred EEEcCC--CCeEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE-Ec
Q 000177 1650 IHFSPS--DTMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS-VP 1714 (1922)
Q Consensus 1650 VaFSPd--G~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t-l~ 1714 (1922)
+.|-+. ...|+++. ++||.+.+ +|+.+|+-....+ ++...|.|++|++|. ..+|+++++++.. +.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC
Confidence 888887 77888777 99999976 4899999888888 899999999999998 3899999998877 66
Q ss_pred CCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC
Q 000177 1715 SLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1715 gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP 1785 (1922)
+... .++..+|++++++++. ++.-+|++|..+.+.+..+-++..++.+-+.+
T Consensus 288 g~tGsirsih~hp~~~~las~G-------------------LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCG-------------------LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred CccCCcceEEEcCCCceEEeec-------------------cceeEEEeecccchhhhhhhhhccccEEEecC
Confidence 6655 7999999999999884 34457888988888888877777776665544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-06 Score=107.74 Aligned_cols=271 Identities=13% Similarity=0.156 Sum_probs=153.1
Q ss_pred EEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---ceeEE
Q 000177 1524 IAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG---CKAAR 1599 (1922)
Q Consensus 1524 LASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---h~sVa 1599 (1922)
+++-..++.|.|.|..+.+.+.++......-..+ .|+|||+++.. +.|+.|.+||+.+ .+.+.++.. ..+++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~--~~s~Dgr~~yv~~rdg~vsviD~~~--~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGL--KFSPDGRYLYVANRDGTVSVIDLAT--GKVVATIKVGGNPRGIA 84 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEE--E-TT-SSEEEEEETTSEEEEEETTS--SSEEEEEE-SSEEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEE--EecCCCCEEEEEcCCCeEEEEECCc--ccEEEEEecCCCcceEE
Confidence 3556678999999999999999997554433345 78999998877 5699999999998 777777753 47899
Q ss_pred EcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ec---cEEE--EcCCCcc
Q 000177 1600 FSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WN---GILW--DRRNSVP 1673 (1922)
Q Consensus 1600 FSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sg---grLW--Dlrtgk~ 1673 (1922)
+++||++++++. ...+.+.++|.++.+.+++++...............+..+|....++ +- +.+| |....+.
T Consensus 85 ~s~DG~~~~v~n--~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVAN--YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp E--TTTEEEEEE--EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EcCCCCEEEEEe--cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 999999998873 45789999999999999988622111111111222356677777444 32 2777 5444443
Q ss_pred e--eeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcCC----CceeE-EEccCCCEEEEEEccCchh
Q 000177 1674 V--HRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSL----DQTTI-TFNARGDVIYAILRRNLED 1740 (1922)
Q Consensus 1674 I--~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH----~~~sV-aFSPdG~~LaSgs~~d~~d 1740 (1922)
+ ..+..........|+|+|+|++.+. -++|..+++.+..+... ..... --+|..-.+.+..... ..
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~-~~ 241 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG-YF 241 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS-SS
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc-ce
Confidence 3 3333333333899999999988876 38999999888766421 11111 1233321222211111 00
Q ss_pred hhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1741 VMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1741 v~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
....+ -.....+++..+++.+.+++....-.-+..+|+++++.+-..-..+ ...+.+++..
T Consensus 242 ~~~~i--------g~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~--~~~v~viD~~ 302 (369)
T PF02239_consen 242 AIPLI--------GTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD--ADTVQVIDKK 302 (369)
T ss_dssp EEEEE--------E--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS--HT-EEEEECC
T ss_pred ecccc--------cCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC--CceEEEEECc
Confidence 00000 0011124566778888888886665888999999999875211111 3566777653
|
... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-08 Score=114.47 Aligned_cols=161 Identities=16% Similarity=0.197 Sum_probs=117.4
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
+|||+|+++++..+..+.|-|..+ -+..+.| ..+..+.|.-+.-+++++ -..|+.|.+|++....-..++.
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~~t--lq~~qlf~cldki~yieW~ads~~ilC~--~yk~~~vqvwsl~Qpew~ckId-- 88 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDSET--LQLHQLFLCLDKIVYIEWKADSCHILCV--AYKDPKVQVWSLVQPEWYCKID-- 88 (447)
T ss_pred eECCCCCeeeeeeeeEEEEeccch--hhHHHHHHHHHHhhheeeeccceeeeee--eeccceEEEEEeecceeEEEec--
Confidence 689999999999888999999887 4443333 345789999998887776 2678899999999877666664
Q ss_pred cccccCCCCcc-eEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE--------
Q 000177 1637 SVNLTGRGHAY-SQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-------- 1700 (1922)
Q Consensus 1637 s~~~~~~gh~~-~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-------- 1700 (1922)
.|... ..++|||+|+.++..+ .+|.+.+.+..+.- -....+ .++|+|+|++.++.++
T Consensus 89 ------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 89 ------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred ------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeecccHHHHHH
Confidence 23333 3399999998877665 79999987765422 222233 8999999999999994
Q ss_pred EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1701 VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1701 IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
|..-....+++.+.-.+. +.+.|+|||.+|+.-
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw 196 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW 196 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe
Confidence 222223344555553333 899999999999875
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-06 Score=107.30 Aligned_cols=276 Identities=14% Similarity=0.085 Sum_probs=182.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCCceeeeccCCCC--ee-EEEeeecCCCcEEEEec
Q 000177 1511 LLTCITFLGDSSHIAVGSHTK---------------ELKIFDSNSSSPLESCTSHQAP--VT-LVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DG---------------tIkIWDl~tgk~l~tL~gHss~--Vt-sLq~afSpDG~lLaSSs 1572 (1922)
.|..+.|||.+++|.|=+..+ .+.|||+.+|..+.++.+-..+ .+ -+ .|+-+.++++--.
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~--k~s~~D~y~ARvv 150 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVL--KFSIDDKYVARVV 150 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccccccee--eeeecchhhhhhc
Confidence 589999999999999865443 4999999999999999877666 55 55 5677877776644
Q ss_pred CCcEEEeccCC-CCCCcceEe--ccceeEEEcCCC--CEEEEe--ecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1573 SQDVHLWNASS-IAGGPMHSF--EGCKAARFSNSG--NLFAAL--PTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1573 DgtVkLWDl~t-~~gk~l~tf--~gh~sVaFSPDG--~~LaSg--S~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
...++|+++.. ....+...+ .++....|+|.+ ..|+.= -..+.+.+++||.+..+..+.+-. ...-
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-------lfk~ 223 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-------LFKV 223 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------eEee
Confidence 55688888622 112233333 345778889853 333332 123577899999998666554432 0112
Q ss_pred cceEEEEcCCCCeEeecc----------------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-------EE
Q 000177 1646 AYSQIHFSPSDTMLLWNG----------------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-------EV 1701 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg----------------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-------eI 1701 (1922)
....+.|++.|++++.-- .|++++ ++-+..-....+.| ..+|.|.++.+++.+ .+
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~ 302 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSV 302 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceeccccccceeeeecccCCceeEEecccccceee
Confidence 333389999998876211 566666 33333332446677 999999998777766 38
Q ss_pred EecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEE
Q 000177 1702 WDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDF 1781 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dL 1781 (1922)
+|++ +.+...++....+.+.|||.+++++.+..++ +...+.+|+..+.-.+.+.-...+..-.
T Consensus 303 ~~lr-~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~n----------------l~gni~i~~~~~rf~~~~~~~~~n~s~~ 365 (561)
T COG5354 303 FDLR-GNLRFYFPEQKRNTIFFSPHERYILFAGFDN----------------LQGNIEIFDPAGRFKVAGAFNGLNTSYC 365 (561)
T ss_pred cccc-cceEEecCCcccccccccCcccEEEEecCCc----------------cccceEEeccCCceEEEEEeecCCceEe
Confidence 9998 4477777766668999999999999874333 3344555554443333322223345567
Q ss_pred EEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1782 ATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1782 a~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.|+|++.|+-+.--......|..+.||+++..
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 89999998775532223345788999998643
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-07 Score=107.58 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=132.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC-C
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS-I 1584 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t-~ 1584 (1922)
.+|+|.+|++|++.+|++-....|.||.....+ ...+++.|...|+.| .|+|..+.|++| .|..-+||.... .
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgv--dWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGV--DWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEE--eecCCCCceeEccCCCCccccccCCCC
Confidence 689999999999999999999999999987654 567889999999999 789998888885 599999999843 2
Q ss_pred CCCcceEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1585 AGGPMHSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1585 ~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
..++...+. ..+++.|+|.++.|++| +.-+.|.||=.+..+-...-+ . ........+.++.|+|++-+++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVg---Sgar~isVcy~E~ENdWWVsK-h--ikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVG---SGARLISVCYYEQENDWWVSK-H--IKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEec---cCccEEEEEEEecccceehhh-h--hCCccccceeeeeccCCcceec
Confidence 223322222 24899999999999999 667888888776543321110 0 0000124456699999999999
Q ss_pred ecc-----EEEE-----cCC-------------CcceeeeccCCCce-EEEEecCCCEEEEEe
Q 000177 1661 WNG-----ILWD-----RRN-------------SVPVHRFDQFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1661 Sgg-----rLWD-----lrt-------------gk~I~kf~gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
+++ ++|. +.. |+.+..+....+++ .+.|+|+|..|+-.+
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 777 3333 221 23445555455677 999999999998666
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.4e-07 Score=114.27 Aligned_cols=246 Identities=12% Similarity=0.126 Sum_probs=159.4
Q ss_pred cccCCccccccceeee--cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEE
Q 000177 1480 TYSGVHRNRRDRQFVY--SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLV 1557 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~--srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsL 1557 (1922)
..+..+|....|+-.. ..--..+.|.-|. ..|++++|+++|.+|++|+..|.+.+|.+.+++ .+-+.--.++|..+
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i 298 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHH-DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHI 298 (792)
T ss_pred EEeccCCcEEEEeccccccccccceEEEecc-cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEE
Confidence 3444555544444323 1112345677788 899999999999999999999999999999988 33445567899999
Q ss_pred EeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---------------ceeEEEcCCCCEEEEeecCCCCCeEEE
Q 000177 1558 QSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG---------------CKAARFSNSGNLFAALPTETSDRGILL 1621 (1922)
Q Consensus 1558 q~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---------------h~sVaFSPDG~~LaSgS~~S~DgtIrI 1621 (1922)
.+|||+.+.+. ..|+.|.+....+ .....++.+ .+.++++|-.+.++.. +.-+.|.+
T Consensus 299 --~vS~ds~~~sl~~~DNqI~li~~~d--l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln---~~~g~vQ~ 371 (792)
T KOG1963|consen 299 --VVSPDSDLYSLVLEDNQIHLIKASD--LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN---GHPGHVQF 371 (792)
T ss_pred --EEcCCCCeEEEEecCceEEEEeccc--hhhhhhccCccCCCccccccccccceeEEEcCCCCceeec---CCCceEEE
Confidence 88999998877 5799999988755 222222222 2567888965666666 77899999
Q ss_pred EECCCCceeeeeccccccc-cCC-CCcceE--EEEcCCCCeEeecc---------------EEEEcCCCc----ceeeec
Q 000177 1622 YDIQTYQLEAKLSDTSVNL-TGR-GHAYSQ--IHFSPSDTMLLWNG---------------ILWDRRNSV----PVHRFD 1678 (1922)
Q Consensus 1622 WDlrTgk~i~tL~d~s~~~-~~~-gh~~~v--VaFSPdG~lLaSgg---------------rLWDlrtgk----~I~kf~ 1678 (1922)
||+-+...+..+.....+. .+. .+.+.+ ++.+..|.+++|.- ++|-..... ...++.
T Consensus 372 ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~ 451 (792)
T KOG1963|consen 372 YDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN 451 (792)
T ss_pred EeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe
Confidence 9999888777664111111 011 122222 66677788888665 788765432 223333
Q ss_pred -cCCCce-EEEE-ecCCC-EEEEEe-----EEEecCCC------------eEEEEEcCCCceeEEEccCCCEEEEEE
Q 000177 1679 -QFTDHG-GGGF-HPAGN-EVIINS-----EVWDLRKF------------RLLRSVPSLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1679 -gh~~~V-sVaF-SPdG~-~LASGS-----eIWDLrTg------------klL~tl~gH~~~sVaFSPdG~~LaSgs 1734 (1922)
.|...+ ..+| +|... ..++++ +||-+... +.+..+.....+..+|+.||..|+.+.
T Consensus 452 ~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~ 528 (792)
T KOG1963|consen 452 NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF 528 (792)
T ss_pred cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec
Confidence 344433 4444 44333 666765 69987321 123333333347999999999998874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.5e-07 Score=104.56 Aligned_cols=211 Identities=18% Similarity=0.310 Sum_probs=136.0
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC----Cc----------eeeeccCCCCeeEEEeeecCCCcEEEEec--
Q 000177 1510 ALLTCITFLGD-SSHIAVGSHTKELKIFDSNSS----SP----------LESCTSHQAPVTLVQSHLSGETQLLLSSS-- 1572 (1922)
Q Consensus 1510 ~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tg----k~----------l~tL~gHss~VtsLq~afSpDG~lLaSSs-- 1572 (1922)
..|+|++|-|. ++-|+.|...| |.||..... .. +....|| .+|+++ .|.+||..+++++
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsm--qwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSM--QWNEDGTILVTASFG 216 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEE--EEcCCCCEEeecccC
Confidence 57999999994 45677776655 899987421 11 1223566 789999 7799999999964
Q ss_pred CCcEEEeccCCCCCCcceE--eccceeEEEcCCCCEEEEeecCCCCCeEEEEECC-CCceeeeeccccccccCCCCcceE
Q 000177 1573 SQDVHLWNASSIAGGPMHS--FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~t--f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
|..|.|||..+....++.. +.+..-+.|||||.+|.++ +-|+..++|... +..+..-.. +.+ .+..
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA---t~davfrlw~e~q~wt~erw~l-------gsg-rvqt 285 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA---TCDAVFRLWQENQSWTKERWIL-------GSG-RVQT 285 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe---cccceeeeehhcccceecceec-------cCC-ceee
Confidence 8899999999844444442 2346789999999999998 889999999543 333322221 123 4445
Q ss_pred EEEcCCCCeEeecc----EEEEcCCCc-c--------------eeee------cc---CCCce-EEEEecCCCEEEEEeE
Q 000177 1650 IHFSPSDTMLLWNG----ILWDRRNSV-P--------------VHRF------DQ---FTDHG-GGGFHPAGNEVIINSE 1700 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg----rLWDlrtgk-~--------------I~kf------~g---h~~~V-sVaFSPdG~~LASGSe 1700 (1922)
.+|+|+|+.|+... .+|.+.... + +..+ .+ ..+.. +++|.|.|.++++.-|
T Consensus 286 acWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 99999999877322 666655211 0 1111 11 01223 7899999999998763
Q ss_pred -------------EEecCCCeEEEEEc-----CCCceeEEEcc---CCCEEEEEEc
Q 000177 1701 -------------VWDLRKFRLLRSVP-----SLDQTTITFNA---RGDVIYAILR 1735 (1922)
Q Consensus 1701 -------------IWDLrTgklL~tl~-----gH~~~sVaFSP---dG~~LaSgs~ 1735 (1922)
+||.+..-.+.-.. +....-++|+| +|.+|..+|.
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs 421 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS 421 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEec
Confidence 67776543333221 11124666666 4666666654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=121.28 Aligned_cols=235 Identities=14% Similarity=0.150 Sum_probs=143.1
Q ss_pred cceeeecCceeeEEecCCC--CCCEEEEEEcC--CCCEEEEEeCCCcEEEEECC-CC----Cceeee---ccCC---CCe
Q 000177 1490 DRQFVYSRFRPWRTCRDDA--GALLTCITFLG--DSSHIAVGSHTKELKIFDSN-SS----SPLESC---TSHQ---APV 1554 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~--d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~-tg----k~l~tL---~gHs---s~V 1554 (1922)
.+.|.+.+.+....|..+. ...|+.+.+-. |..+|++|+.||.||||+-. ++ +.+..+ .++. ...
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~ 1167 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT 1167 (1387)
T ss_pred EEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC
Confidence 3334444444444443321 25688888876 56699999999999999742 21 222222 2221 111
Q ss_pred eEEEeeecCC-CcEEEEecCCcEEEeccCCCCCCcceEecc-----ceeEEEc-CCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1555 TLVQSHLSGE-TQLLLSSSSQDVHLWNASSIAGGPMHSFEG-----CKAARFS-NSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1555 tsLq~afSpD-G~lLaSSsDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFS-PDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
..+ +.|... |.++++|+-..|+|||... ..++..+.- ++++.-+ +.|+.|++| -.||.|++||.+..
T Consensus 1168 ~~v-~dWqQ~~G~Ll~tGd~r~IRIWDa~~--E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG---faDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1168 GLV-VDWQQQSGHLLVTGDVRSIRIWDAHK--EQVVADIPYGSSTLVTALSADLVHGNIIAAG---FADGSVRVYDRRMA 1241 (1387)
T ss_pred Cee-eehhhhCCeEEecCCeeEEEEEeccc--ceeEeecccCCCccceeecccccCCceEEEe---ecCCceEEeecccC
Confidence 122 255554 5566667788999999987 444444321 2332221 237899998 88999999999864
Q ss_pred ceeeeeccccccccCCCCcce--E--EEEcCCCC-eEeecc-----EEEEcCCCccee--eeccCC--C-ce-EEEEecC
Q 000177 1628 QLEAKLSDTSVNLTGRGHAYS--Q--IHFSPSDT-MLLWNG-----ILWDRRNSVPVH--RFDQFT--D-HG-GGGFHPA 1691 (1922)
Q Consensus 1628 k~i~tL~d~s~~~~~~gh~~~--v--VaFSPdG~-lLaSgg-----rLWDlrtgk~I~--kf~gh~--~-~V-sVaFSPd 1691 (1922)
..-.-+ ...+.|... + +.+.+.|- .|++++ ++||+|...... +...|- + .. ++..|++
T Consensus 1242 ~~ds~v------~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1242 PPDSLV------CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred Cccccc------eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC
Confidence 331111 011234433 3 77777664 366666 999999852222 222222 2 13 8899999
Q ss_pred CCEEEEEe----EEEecCCCeEEEEEcCCCc---------eeEEEccCCCEEEEEEccC
Q 000177 1692 GNEVIINS----EVWDLRKFRLLRSVPSLDQ---------TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1692 G~~LASGS----eIWDLrTgklL~tl~gH~~---------~sVaFSPdG~~LaSgs~~d 1737 (1922)
...+|+|+ +||++. |+.+..++.+.. .|++|+|---.+++|+.++
T Consensus 1316 apiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1316 APIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred CCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc
Confidence 99999999 699996 655555543322 6999999988888885444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-06 Score=107.60 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=115.4
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE--E-EEec-C--CcEEEeccCCCCCCcceEeccc-eeEEEcCC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL--L-LSSS-S--QDVHLWNASSIAGGPMHSFEGC-KAARFSNS 1603 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l--L-aSSs-D--gtVkLWDl~t~~gk~l~tf~gh-~sVaFSPD 1603 (1922)
+.|.+.|.+.++. +.+..+...+.+- .|||||+. + .++. + ..|.+.++.....+.+..+.+. ....|+||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP--~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITP--TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccc--eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC
Confidence 4566777655444 3344344444444 89999874 2 2343 3 3577888876333344445554 56899999
Q ss_pred CCEEEEeecC--CCCCeEEEEECCCC---ceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcC--C
Q 000177 1604 GNLFAALPTE--TSDRGILLYDIQTY---QLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRR--N 1670 (1922)
Q Consensus 1604 G~~LaSgS~~--S~DgtIrIWDlrTg---k~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlr--t 1670 (1922)
|++|+..+.. ..+..+.+||+.++ ....... .........+|+|||+.|+..+ .+|.+. .
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~ 314 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP 314 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence 9998876422 22444555787653 2222221 0001122379999999777432 566543 2
Q ss_pred -CcceeeeccCCCce-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEE
Q 000177 1671 -SVPVHRFDQFTDHG-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1671 -gk~I~kf~gh~~~V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs 1734 (1922)
+.....+......+ ...|||||++|+..+ .+||+.+++......+. ......|+|+|++|+...
T Consensus 315 ~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 315 EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence 23344444443444 789999999998765 27899888664333221 226899999999888653
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-07 Score=110.18 Aligned_cols=199 Identities=15% Similarity=0.203 Sum_probs=143.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecCCCc-EEEEec-C--CcEEEecc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSGETQ-LLLSSS-S--QDVHLWNA 1581 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSpDG~-lLaSSs-D--gtVkLWDl 1581 (1922)
..|..++.. ..+|++|-.+|.+.+|....+. .+..+..| .++..+ .-++... ++++|. . ..++|||+
T Consensus 106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~--r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDV--RQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-Cceeee--ccCCCCCceEecCchhcccceeeeec
Confidence 455555544 3478899999999999987543 33344433 456666 4455444 445454 5 67999999
Q ss_pred CCCCCCcceEecc-------------ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCC
Q 000177 1582 SSIAGGPMHSFEG-------------CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1582 ~t~~gk~l~tf~g-------------h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh 1645 (1922)
+. .+.+++-+. .+.+.|-+. ...|+++ +.-+.+++||.+.+. ++.+|. ...+
T Consensus 181 e~--~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~---T~~hqvR~YDt~~qRRPV~~fd-------~~E~ 248 (412)
T KOG3881|consen 181 EQ--SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI---TRYHQVRLYDTRHQRRPVAQFD-------FLEN 248 (412)
T ss_pred cc--ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE---ecceeEEEecCcccCcceeEec-------cccC
Confidence 87 433333222 267889886 7899999 788999999999764 344443 3467
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCcceee-eccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHR-FDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~k-f~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
....+...|++++|+++. ..||++.++.+.. |++..+.+ ++..||+++++++++ +|+|+.+.+++..+
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 788899999999999877 8999999987666 89999999 999999999999999 69999997777654
Q ss_pred cCCCc-eeEEEcc
Q 000177 1714 PSLDQ-TTITFNA 1725 (1922)
Q Consensus 1714 ~gH~~-~sVaFSP 1725 (1922)
--... +++.+.+
T Consensus 329 YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 329 YVKSRLTFILLRD 341 (412)
T ss_pred hhhccccEEEecC
Confidence 42222 5555544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-08 Score=115.18 Aligned_cols=170 Identities=18% Similarity=0.304 Sum_probs=117.2
Q ss_pred eEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1555 TLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
..+ +|+.+|..|+++ .||+++||++.+ ...+.... .+.++.|+|||++|++. +.| ..+||++++|.+
T Consensus 148 k~v--af~~~gs~latgg~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS~dgk~lasi---g~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVV--AFNGDGSKLATGGTDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFSPDGKFLASI---GAD-SARVWSVNTGAA 219 (398)
T ss_pred eEE--EEcCCCCEeeeccccceEEEEecCc--chhhhhhHhhcCccccceeCCCCcEEEEe---cCC-ceEEEEeccCch
Confidence 455 889999999995 699999999876 33333332 35889999999999998 777 799999999987
Q ss_pred eeeeccccccccCCCCcceEEEEcCCC---CeEeecc------------EEEEcCCCcceee-eccCCCceEEEEecCCC
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSD---TMLLWNG------------ILWDRRNSVPVHR-FDQFTDHGGGGFHPAGN 1693 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG---~lLaSgg------------rLWDlrtgk~I~k-f~gh~~~VsVaFSPdG~ 1693 (1922)
+....+. ...+....+.|+.++ .+.+... .+|+-..--...+ ...++..-+++.+++|+
T Consensus 220 ~a~~t~~-----~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk 294 (398)
T KOG0771|consen 220 LARKTPF-----SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK 294 (398)
T ss_pred hhhcCCc-----ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc
Confidence 7766521 112333337777666 3333222 3454321111122 22233333999999999
Q ss_pred EEEEEe-----EEEecCCCeEEEEEc-CCCc--eeEEEccCCCEEEEEEccC
Q 000177 1694 EVIINS-----EVWDLRKFRLLRSVP-SLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1694 ~LASGS-----eIWDLrTgklL~tl~-gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+++.|+ -|++..+.+.++-++ .|.. +.+.|+|+.+++++.+.++
T Consensus 295 f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 999999 388888888887776 4443 8999999999998864333
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-06 Score=106.98 Aligned_cols=234 Identities=15% Similarity=0.230 Sum_probs=159.0
Q ss_pred eeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe--ccceeEEEcCCCCEEEEeecCC--------CCCeEEEEE
Q 000177 1554 VTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF--EGCKAARFSNSGNLFAALPTET--------SDRGILLYD 1623 (1922)
Q Consensus 1554 VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf--~gh~sVaFSPDG~~LaSgS~~S--------~DgtIrIWD 1623 (1922)
-+.+ .|||.|.||+|=.-.-|.+|--.+ ...++.| .++..+.|||+.++|+|=+..- ....+.|||
T Consensus 213 etyv--~wSP~GTYL~t~Hk~GI~lWGG~~--f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYV--RWSPKGTYLVTFHKQGIALWGGES--FDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeE--EecCCceEEEEEeccceeeecCcc--HHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3556 789999999998877899998766 4455555 3568899999999999863321 236799999
Q ss_pred CCCCceeeeeccccccccCCCCc-ceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1624 IQTYQLEAKLSDTSVNLTGRGHA-YSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1624 lrTgk~i~tL~d~s~~~~~~gh~-~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
++||....+|.... .... -+.+.||-|+++++--. .||+..+-.++..-.-.-..| ...|+|.++.||-
T Consensus 289 I~tG~lkrsF~~~~-----~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 289 IATGLLKRSFPVIK-----SPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ccccchhcceeccC-----CCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99999998886210 1222 23499999999999433 777765532222111112334 7799999998886
Q ss_pred Ee----------EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccC---CcceEEEEe
Q 000177 1698 NS----------EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHP---LFAAFRTVD 1762 (1922)
Q Consensus 1698 GS----------eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp---~~ssFrt~D 1762 (1922)
-+ -+-.+.+.+.+++..-+.. +.+.|-.+|.+|+.-..+ ..+.. ..+.|.++.
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR------------~tK~~~~g~f~n~eIfr 431 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDR------------HTKSKVKGQFSNLEIFR 431 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEe------------eccccccceEeeEEEEE
Confidence 55 1556666677776665554 789999999999975211 11111 223344443
Q ss_pred cC-CCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1763 AI-NYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1763 a~-dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.. .--++-.++.+..|..++|.|.|..++++..... -+.++.|.+.
T Consensus 432 ireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~---k~tvsfY~~e 478 (698)
T KOG2314|consen 432 IREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV---KNTVSFYAVE 478 (698)
T ss_pred eeccCCCceeeecchheeeeeeccCCCeEEEEEcccc---ccceeEEEee
Confidence 32 2345677788999999999999999999975543 3567777664
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=108.86 Aligned_cols=277 Identities=13% Similarity=0.256 Sum_probs=166.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----ceeeeccCC------------CCeeEEEeeecCCC---cEEE
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-----PLESCTSHQ------------APVTLVQSHLSGET---QLLL 1569 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-----~l~tL~gHs------------s~VtsLq~afSpDG---~lLa 1569 (1922)
+-|.++.|...|.+|+||..+|.|.+|.-.... ....++.|. ..|+.| .|.+++ .+|+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkI--rw~~~~n~a~FLl 103 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKI--RWLDDGNLAEFLL 103 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhc--eecCCCCccEEEE
Confidence 568999999999999999999999999754322 223445554 357778 445543 3666
Q ss_pred EecCCcEEEeccCCCCCCc---------------------------------ceEec-cc----eeEEEcCCCCEEEEee
Q 000177 1570 SSSSQDVHLWNASSIAGGP---------------------------------MHSFE-GC----KAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1570 SSsDgtVkLWDl~t~~gk~---------------------------------l~tf~-gh----~sVaFSPDG~~LaSgS 1611 (1922)
+..|.+|++|-+.....+. .+.+. .| +++.++.|+..+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-- 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-- 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee--
Confidence 7789999999986521111 00111 12 67899999999998
Q ss_pred cCCCCCeEEEEECCCCceeeeecc---ccccccCCCCcceEEEEcCCCCe-Ee-ecc----EEEEcCCCcc----eeeec
Q 000177 1612 TETSDRGILLYDIQTYQLEAKLSD---TSVNLTGRGHAYSQIHFSPSDTM-LL-WNG----ILWDRRNSVP----VHRFD 1678 (1922)
Q Consensus 1612 ~~S~DgtIrIWDlrTgk~i~tL~d---~s~~~~~~gh~~~vVaFSPdG~l-La-Sgg----rLWDlrtgk~----I~kf~ 1678 (1922)
..|-.|.+|.+.--..-..+-+ ..+.. ....+....|+|.... ++ +.+ +|-|+|.... -+.|.
T Consensus 182 --ADdLRINLWnlei~d~sFnIVDIKP~nmEe--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 182 --ADDLRINLWNLEIIDQSFNIVDIKPANMEE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred --ccceeeeeccccccCCceeEEEccccCHHH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 4788999999874332222211 11000 0112333778886543 33 333 8999985321 11121
Q ss_pred c---------CC---Cce-EEEEecCCCEEEEEe----EEEec-CCCeEEEEEcCCCc-----------------eeEEE
Q 000177 1679 Q---------FT---DHG-GGGFHPAGNEVIINS----EVWDL-RKFRLLRSVPSLDQ-----------------TTITF 1723 (1922)
Q Consensus 1679 g---------h~---~~V-sVaFSPdG~~LASGS----eIWDL-rTgklL~tl~gH~~-----------------~sVaF 1723 (1922)
. +. ..| .+.|+++|+|+++-. ++||+ ...+++.+++-|.. ..++|
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 1 11 223 689999999999987 79999 45788888886653 36889
Q ss_pred ccCCCEEEEEEccCchhhhh---------hhcccccc--cCCcceEEEEe-cCCC----ceeeeeccCCceEEEEEcCCC
Q 000177 1724 NARGDVIYAILRRNLEDVMS---------AVHTRRVK--HPLFAAFRTVD-AINY----SDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d~~dv~s---------~lh~rr~k--sp~~ssFrt~D-a~dy----s~IaTidvkr~I~dLa~SPdd 1787 (1922)
|.++.++++|+..+.-.++. .+...+.. .......+.+- ..+. -.+-..+....|+..+|+|..
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~e 417 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKE 417 (433)
T ss_pred cCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcc
Confidence 99999999985433211111 01001100 00111112121 1111 122233446678999999999
Q ss_pred ceEEEEe
Q 000177 1788 SFVGLIT 1794 (1922)
Q Consensus 1788 s~LAVVe 1794 (1922)
..||+..
T Consensus 418 n~ia~aa 424 (433)
T KOG1354|consen 418 NSIAVAA 424 (433)
T ss_pred ceeeeee
Confidence 9999874
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.2e-07 Score=102.68 Aligned_cols=202 Identities=13% Similarity=0.137 Sum_probs=137.7
Q ss_pred cCceeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------CceeeeccCCCCeeEEEeeecCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSS---------SPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tg---------k~l~tL~gHss~VtsLq~afSpD 1564 (1922)
+++......+.|. +.|+.|.|.+ =|+.+|++|.|++|+||.-... ....++....+.|+.|+|+...-
T Consensus 47 ~~W~~Ts~Wrah~-~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl 125 (361)
T KOG2445|consen 47 GTWSCTSSWRAHD-GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL 125 (361)
T ss_pred CceEEeeeEEecC-CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc
Confidence 3455566678899 9999999987 6899999999999999985311 12346677789999995554446
Q ss_pred CcEEEE-ecCCcEEEeccCCCC----CCcceEec-----------cceeEEEcCC---CCEEEEeecCC--CCCeEEEEE
Q 000177 1565 TQLLLS-SSSQDVHLWNASSIA----GGPMHSFE-----------GCKAARFSNS---GNLFAALPTET--SDRGILLYD 1623 (1922)
Q Consensus 1565 G~lLaS-SsDgtVkLWDl~t~~----gk~l~tf~-----------gh~sVaFSPD---G~~LaSgS~~S--~DgtIrIWD 1623 (1922)
|-.+++ +.||+++||+.-.+. ....+.++ ...|+.|+|. ..+|+.|+.+. .-+.++||.
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 778888 569999999875521 11122222 1368999984 46788873321 114788887
Q ss_pred CCCCc-eeeeeccccccccCCCCcceE--EEEcCCC----CeEeecc----EEEEcCCC--------------------c
Q 000177 1624 IQTYQ-LEAKLSDTSVNLTGRGHAYSQ--IHFSPSD----TMLLWNG----ILWDRRNS--------------------V 1672 (1922)
Q Consensus 1624 lrTgk-~i~tL~d~s~~~~~~gh~~~v--VaFSPdG----~lLaSgg----rLWDlrtg--------------------k 1672 (1922)
...+. ....+. ...+|..++ ++|.|+- .+|++++ +||.++.. +
T Consensus 206 ~~e~~rKw~kva------~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 206 YNENGRKWLKVA------ELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred ecCCcceeeeeh------hcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceE
Confidence 65433 222222 112455554 9999964 4566555 89998831 1
Q ss_pred ceeeeccCCCce-EEEEecCCCEEEEEe-----EEEec
Q 000177 1673 PVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1673 ~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
.+..|.+|+..+ .+.|+-.|..|++.+ ++|..
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 345578888888 999999999999887 57754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-06 Score=107.07 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=121.8
Q ss_pred ecCCCCCCEEEEEEcCCCCEE---EEEeCCC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--CC--
Q 000177 1504 CRDDAGALLTCITFLGDSSHI---AVGSHTK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--SQ-- 1574 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lL---ASGS~DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--Dg-- 1574 (1922)
|..+. ..+.+-+|||||+.+ ++...+| .|.+.++.+++... +....+..... .|||||+.|+... ++
T Consensus 180 lt~~~-~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p--~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 180 LTQEH-SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMP--TFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred cccCC-CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccce--EECCCCCEEEEEECCCCCc
Confidence 44444 456677999999752 2444443 57777888776433 22233334445 8999998887633 22
Q ss_pred --cEEEeccCCCC-CCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCc
Q 000177 1575 --DVHLWNASSIA-GGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1575 --tVkLWDl~t~~-gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.+.+|++.... +.+.....+ .....|+|||+.|+..+.......|.++++.. +.....+. .....
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-------~~~~~ 328 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-------KKYRN 328 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-------cCCCC
Confidence 34457765411 222222222 25689999999888774322222344445542 22223332 01122
Q ss_pred ceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe------E--EEecCCCeE
Q 000177 1647 YSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS------E--VWDLRKFRL 1709 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS------e--IWDLrTgkl 1709 (1922)
.....|+|||+.|+..+ .+||+.+++... +......+ ...|+|||++|+..+ . +||+.+++.
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 23488999999888543 789998886543 33222233 789999999887543 2 667776654
Q ss_pred EEEEcCCC-ceeEEEccCC
Q 000177 1710 LRSVPSLD-QTTITFNARG 1727 (1922)
Q Consensus 1710 L~tl~gH~-~~sVaFSPdG 1727 (1922)
.....+.. ....+|+|-.
T Consensus 408 ~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 408 RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEeecCCCcccCceecCCC
Confidence 43333222 2567777753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-05 Score=95.98 Aligned_cols=266 Identities=14% Similarity=0.216 Sum_probs=161.3
Q ss_pred EEEEEeC----CCcEEEEECCCCCce---eeeccCCCCeeEEEeeecCCCcEEEEe----cCCcEEEeccCCCCCCcc--
Q 000177 1523 HIAVGSH----TKELKIFDSNSSSPL---ESCTSHQAPVTLVQSHLSGETQLLLSS----SSQDVHLWNASSIAGGPM-- 1589 (1922)
Q Consensus 1523 lLASGS~----DGtIkIWDl~tgk~l---~tL~gHss~VtsLq~afSpDG~lLaSS----sDgtVkLWDl~t~~gk~l-- 1589 (1922)
.++.|+. +.-|.+|++++..-. ..+-.+.+..+-| +|+|++++|.++ .++.|.-|.+....|...
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl--~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYL--AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceE--EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 3455554 367999999743221 2234567788888 899999888874 267787777764223321
Q ss_pred --eEecc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cceee---eeccccccc-cCCCCc-ceEEEEcCCCCeE
Q 000177 1590 --HSFEG--CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEA---KLSDTSVNL-TGRGHA-YSQIHFSPSDTML 1659 (1922)
Q Consensus 1590 --~tf~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~---tL~d~s~~~-~~~gh~-~~vVaFSPdG~lL 1659 (1922)
....+ ..+++++++|++++++.-. -+.|.++-++. |.... .+....... ....++ .-.+.|.|++++|
T Consensus 82 n~~~~~g~~p~yvsvd~~g~~vf~AnY~--~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l 159 (346)
T COG2706 82 NRQTLPGSPPCYVSVDEDGRFVFVANYH--SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL 159 (346)
T ss_pred eccccCCCCCeEEEECCCCCEEEEEEcc--CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEE
Confidence 11122 3789999999999998443 48899999976 33322 221000000 000000 1228899999999
Q ss_pred eecc------EEEEcCCCcce----eeeccCCCceEEEEecCCCEEEEEeE------EEecCCC----eEEEEEcCCCc-
Q 000177 1660 LWNG------ILWDRRNSVPV----HRFDQFTDHGGGGFHPAGNEVIINSE------VWDLRKF----RLLRSVPSLDQ- 1718 (1922)
Q Consensus 1660 aSgg------rLWDlrtgk~I----~kf~gh~~~VsVaFSPdG~~LASGSe------IWDLrTg----klL~tl~gH~~- 1718 (1922)
++.. .+|++..|+.. ..++...++--+.|||+|++..+.++ +|..... +.++++.....
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred EEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 9877 89999977642 22222333448999999999888874 8887662 34444432221
Q ss_pred -------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-CceeeeeccCCc-eEEEEEcCCCce
Q 000177 1719 -------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-YSDIATIPVDRC-VLDFATERTDSF 1789 (1922)
Q Consensus 1719 -------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-ys~IaTidvkr~-I~dLa~SPdds~ 1789 (1922)
..|..+|+|++||++-+ ..+ ....|++-.... ...+..+..... -.++.+++.+++
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNR-g~d--------------sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNR-GHD--------------SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecC-CCC--------------eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 48999999999999832 211 112233322211 222333333333 678999999999
Q ss_pred EEEEecCCCCCccceEEEEEecC
Q 000177 1790 VGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|.+...++ ..+.+|++..
T Consensus 305 Liaa~q~s-----d~i~vf~~d~ 322 (346)
T COG2706 305 LIAANQKS-----DNITVFERDK 322 (346)
T ss_pred EEEEccCC-----CcEEEEEEcC
Confidence 98874322 2377787643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-05 Score=97.20 Aligned_cols=258 Identities=15% Similarity=0.247 Sum_probs=151.8
Q ss_pred EEEEeCC----CcEEEEEC--CCCCce--eeeccCCCCeeEEEeeecCCCcEEEEe-----cCCcEEEeccCCCCCC--c
Q 000177 1524 IAVGSHT----KELKIFDS--NSSSPL--ESCTSHQAPVTLVQSHLSGETQLLLSS-----SSQDVHLWNASSIAGG--P 1588 (1922)
Q Consensus 1524 LASGS~D----GtIkIWDl--~tgk~l--~tL~gHss~VtsLq~afSpDG~lLaSS-----sDgtVkLWDl~t~~gk--~ 1588 (1922)
+++|+.+ +.|.+|++ .+++.. ..+. -......| .++|++++|.+. ..+.|..|.+....++ .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l--~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWL--AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCE--EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceE--EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 5667766 68888888 334332 2222 22334456 779999988874 2568988988762122 2
Q ss_pred ceEec--c--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cceeee---ec----cccccccCCCCcceEEEEcCCC
Q 000177 1589 MHSFE--G--CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAK---LS----DTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1589 l~tf~--g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~t---L~----d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+.+.. + ...++++|++++++++. -.+++|.+|++.. |..... +. .+.... ..+...-.+.|+|+|
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g~~l~van--y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~r-q~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDGRFLYVAN--YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDR-QEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEEEESSSCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTT-TSSTCEEEEEE-TTS
T ss_pred eeeeccCCCCcEEEEEecCCCEEEEEE--ccCCeEEEEEccCCcccceeeeecccCCCCCcccc-cccccceeEEECCCC
Confidence 22222 2 25689999999999873 3579999999987 433222 11 000000 011112238999999
Q ss_pred CeEeecc------EEEEcCCCc--c--eeee--ccCCCceEEEEecCCCEEEEEeE------EEecC--CC--eEEEEEc
Q 000177 1657 TMLLWNG------ILWDRRNSV--P--VHRF--DQFTDHGGGGFHPAGNEVIINSE------VWDLR--KF--RLLRSVP 1714 (1922)
Q Consensus 1657 ~lLaSgg------rLWDlrtgk--~--I~kf--~gh~~~VsVaFSPdG~~LASGSe------IWDLr--Tg--klL~tl~ 1714 (1922)
+++++.. .+|++.... . ...+ ....++-.+.|+|+|+++.+..+ +|++. ++ +.++++.
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 9888654 777776554 2 2223 23334448999999999988772 67776 43 3444444
Q ss_pred CC--------CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEec--C--CCceeeeecc-CCceEEE
Q 000177 1715 SL--------DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDA--I--NYSDIATIPV-DRCVLDF 1781 (1922)
Q Consensus 1715 gH--------~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da--~--dys~IaTidv-kr~I~dL 1781 (1922)
.. ....+.++|+|++||++.+.. .++.+++. . ....+..+.. ...-.++
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~------------------~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~ 297 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGS------------------NSISVFDLDPATGTLTLVQTVPTGGKFPRHF 297 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTT------------------TEEEEEEECTTTTTEEEEEEEEESSSSEEEE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccC------------------CEEEEEEEecCCCceEEEEEEeCCCCCccEE
Confidence 22 126899999999999984322 22333332 1 2334444444 3347899
Q ss_pred EEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1782 ATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1782 a~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
+++|+|+++.|....+ ..+.+|++
T Consensus 298 ~~s~~g~~l~Va~~~s-----~~v~vf~~ 321 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDS-----NTVSVFDI 321 (345)
T ss_dssp EE-TTSSEEEEEETTT-----TEEEEEEE
T ss_pred EEeCCCCEEEEEecCC-----CeEEEEEE
Confidence 9999999999875333 45777766
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=115.90 Aligned_cols=129 Identities=16% Similarity=0.302 Sum_probs=98.1
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC--------------CC--------------ceeeeccCCCCeeEEEee
Q 000177 1510 ALLTCITFLGD-SSHIAVGSHTKELKIFDSNS--------------SS--------------PLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1510 ~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~t--------------gk--------------~l~tL~gHss~VtsLq~a 1560 (1922)
..|+|++|-|. ...++..-.+|.+.+||..- +. ++..+.--.+.|+.. +
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f--~ 297 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF--A 297 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce--e
Confidence 67999999994 44667777899999997631 11 111111112355566 8
Q ss_pred ecCCCcEEEE-ecCCcEEEeccCCCCCCcceE----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1561 LSGETQLLLS-SSSQDVHLWNASSIAGGPMHS----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1561 fSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~t----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
|+|||++|++ |.||.++|||+.+ .+.+.. |-+-.||+|+|||++|++| +.|.-|.||.+...+.+..-
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt--~eLlg~mkSYFGGLLCvcWSPDGKyIvtG---GEDDLVtVwSf~erRVVARG-- 370 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDT--QELLGVMKSYFGGLLCVCWSPDGKYIVTG---GEDDLVTVWSFEERRVVARG-- 370 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccH--HHHHHHHHhhccceEEEEEcCCccEEEec---CCcceEEEEEeccceEEEec--
Confidence 9999999999 7799999999987 444333 3346999999999999999 89999999999988877654
Q ss_pred ccccccCCCCcceE--EEEcC
Q 000177 1636 TSVNLTGRGHAYSQ--IHFSP 1654 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~v--VaFSP 1654 (1922)
++|..++ ++|.|
T Consensus 371 -------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 -------QGHKSWVSVVAFDP 384 (636)
T ss_pred -------cccccceeeEeecc
Confidence 5898887 99987
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.9e-07 Score=116.95 Aligned_cols=207 Identities=14% Similarity=0.158 Sum_probs=137.6
Q ss_pred cCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
-++..+..|..|. ..|..++.++ ++.+++|||.||+|||||+..- ....++.--...+.++ ...+.+..
T Consensus 1036 p~G~lVAhL~Ehs-~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v--t~~~~~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHS-SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV--TMCGNGDQ 1112 (1431)
T ss_pred ccceEeehhhhcc-ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE--EeccCCCe
Confidence 3566677888999 8888888877 5599999999999999998532 2233454456778888 66677777
Q ss_pred EEEe-cCCcEEEeccCCCCCCc-----ceEec----cc--eeEEEcC-CCC-EEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1568 LLSS-SSQDVHLWNASSIAGGP-----MHSFE----GC--KAARFSN-SGN-LFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1568 LaSS-sDgtVkLWDl~t~~gk~-----l~tf~----gh--~sVaFSP-DG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
++.+ .||.|.+.++....... .+... +. ..-+|.. .+. .++.+ +.-+.|..||+++.....++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~---T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA---TDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE---EeccceEEecchhhhhHHhh
Confidence 7774 69999999987511110 11111 11 1122222 233 56666 66788999999987776666
Q ss_pred ccccccccCCCCc-ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC-Cce-EEEEec---CCCEEEEEe---
Q 000177 1634 SDTSVNLTGRGHA-YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT-DHG-GGGFHP---AGNEVIINS--- 1699 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~-~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~-~~V-sVaFSP---dG~~LASGS--- 1699 (1922)
+. + ..|. +..++.+|.+++++.|. .+||+|-+.++..+.-.. ..+ .+..+| ....+++++
T Consensus 1190 k~----~--~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1190 KN----Q--LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hc----C--ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 51 1 1232 34599999999999776 899999999988775432 233 444443 334555554
Q ss_pred ----EEEecCCCeEEEEEc
Q 000177 1700 ----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1700 ----eIWDLrTgklL~tl~ 1714 (1922)
.+|++.+|.+-.++-
T Consensus 1264 ~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred CCceeeeecccCcceEEEE
Confidence 399999987666554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.9e-08 Score=116.77 Aligned_cols=241 Identities=14% Similarity=0.163 Sum_probs=161.7
Q ss_pred eeecCceeeEEec-CCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCC-CCce--eeeccCCCCeeEEEeeecCCC-
Q 000177 1493 FVYSRFRPWRTCR-DDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNS-SSPL--ESCTSHQAPVTLVQSHLSGET- 1565 (1922)
Q Consensus 1493 fi~srfrpirtLr-gH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~t-gk~l--~tL~gHss~VtsLq~afSpDG- 1565 (1922)
|.|.+.++...|. ||. ..|.-.+|-| +.+-|++++.||.|++=.+.. +.+. ..+..|.++|..+ +.-|+.
T Consensus 169 WdW~~~~~~l~f~SGH~-~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkl--av~p~sp 245 (559)
T KOG1334|consen 169 WDWVSGSPKLSFESGHC-NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKL--AVEPDSP 245 (559)
T ss_pred ehhhccCcccccccccc-cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCcccee--eecCCCC
Confidence 3455566665565 599 8888888998 556899999999999987643 3332 3457799999999 555554
Q ss_pred -cEEEEecCCcEEEeccCCCCCCcceEec----------cceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCce----
Q 000177 1566 -QLLLSSSSQDVHLWNASSIAGGPMHSFE----------GCKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQL---- 1629 (1922)
Q Consensus 1566 -~lLaSSsDgtVkLWDl~t~~gk~l~tf~----------gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~---- 1629 (1922)
.++.+|.|+.|+-+|++. ..+...+. +-+.++.+|-. ..|+++ +.|..+++||.+.-..
T Consensus 246 ~~f~S~geD~~v~~~Dlr~--~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg---G~dqf~RvYD~R~~~~e~~n 320 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQ--DVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG---GSDQFARVYDQRRIDKEENN 320 (559)
T ss_pred Ccccccccccceeeeeecc--CCccceeeeeccCCccceeeeeEecCCCCccccccC---Chhhhhhhhcccchhhcccc
Confidence 344446799999999987 44433332 12678888854 478887 8899999999985432
Q ss_pred --eeeeccccccccCCCCcceEEEEcCCC-CeEeecc----EEEEcCC--C----------cceee-eccCCCce---EE
Q 000177 1630 --EAKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG----ILWDRRN--S----------VPVHR-FDQFTDHG---GG 1686 (1922)
Q Consensus 1630 --i~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg----rLWDlrt--g----------k~I~k-f~gh~~~V---sV 1686 (1922)
+.+|.+..+.. ...-.+.++.|+.++ .++++-. ++|.-.. | ..++. |++|.+.- .+
T Consensus 321 ~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV 399 (559)
T KOG1334|consen 321 GVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV 399 (559)
T ss_pred chhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence 23333222221 111223448899555 5555544 5664332 2 23344 88887643 33
Q ss_pred -EEecCCCEEEEEeE-----EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhh
Q 000177 1687 -GFHPAGNEVIINSE-----VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1687 -aFSPdG~~LASGSe-----IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
.|.|...||++||. ||+..++++++-+.+... +|+.=+|--.+|+++.-+...++|
T Consensus 400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred eeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence 67899999999994 999999999887775433 899999999999987433333443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-06 Score=107.86 Aligned_cols=244 Identities=17% Similarity=0.261 Sum_probs=157.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC--CcEEEE---ec---CCcEEEeccCCC
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE--TQLLLS---SS---SQDVHLWNASSI 1584 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD--G~lLaS---Ss---DgtVkLWDl~t~ 1584 (1922)
|+..|+.|..+ +.=-..+.|++|+....+... -.-|...|+.+ .+||. ..+|++ .. -..|+||.+...
T Consensus 129 W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f--~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQ-HKLSVSGITML--SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhh-hhhhhcceEEEEecCCcccee-eeeeccceeeE--EecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 79999998763 333345679999987643221 13357778888 55654 456665 33 346999988631
Q ss_pred C-CCc--ceEe-c-cceeEEEcCCCCEE-EEeecCC--------CCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1585 A-GGP--MHSF-E-GCKAARFSNSGNLF-AALPTET--------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1585 ~-gk~--l~tf-~-gh~sVaFSPDG~~L-aSgS~~S--------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
. ..+ .++| + .+..+.|++-|.-| +.++.+- ...+++++++....+...+. ...++..+
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--------k~GPVhdv 276 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--------KEGPVHDV 276 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--------CCCCceEE
Confidence 0 111 1222 1 23567788866533 2221110 23578888888555555453 23455569
Q ss_pred EEcCCCCeEeec-c------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEc
Q 000177 1651 HFSPSDTMLLWN-G------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1651 aFSPdG~lLaSg-g------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~ 1714 (1922)
+|+|+++-++.+ | .|||++ +++++.| ..+.- ++.|+|.|++|+.++ +|||+.+.+++..+.
T Consensus 277 ~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred EECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 999999776644 3 799977 5566555 33444 899999999999998 699999999999999
Q ss_pred CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC
Q 000177 1715 SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1715 gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP 1785 (1922)
..+.+-+.|+|+|.+++++.... |.+ .++.+++|+ ++.+.+...++++.++.++|-|
T Consensus 354 a~~tt~~eW~PdGe~flTATTaP-----------Rlr--vdNg~Kiwh-ytG~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 354 AANTTVFEWSPDGEYFLTATTAP-----------RLR--VDNGIKIWH-YTGSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred cCCceEEEEcCCCcEEEEEeccc-----------cEE--ecCCeEEEE-ecCceeehhhhhHhHhheeeee
Confidence 88888999999999999984211 111 345566665 2334444445554567777765
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-07 Score=105.10 Aligned_cols=178 Identities=16% Similarity=0.248 Sum_probs=125.5
Q ss_pred CCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCc---eeeeccCCCCeeEEEeeecCCCc-EEEE-ecCCcEEEe
Q 000177 1506 DDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSP---LESCTSHQAPVTLVQSHLSGETQ-LLLS-SSSQDVHLW 1579 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~---l~tL~gHss~VtsLq~afSpDG~-lLaS-SsDgtVkLW 1579 (1922)
.|. .++++..|+. |.++|.+.|-|.+..|||++++.. ...+.+|...|+.| +|...+. ++++ |.||.|++|
T Consensus 148 ~~~-aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI--af~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 148 EFC-APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI--AFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred ccC-CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE--EeccCccceEEEecCCCcEEEE
Confidence 355 8899999997 888999999999999999998743 45668999999999 7777654 4555 679999999
Q ss_pred ccCCCCCCcceEecc------ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceE--
Q 000177 1580 NASSIAGGPMHSFEG------CKAARFSN-SGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQ-- 1649 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g------h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~v-- 1649 (1922)
|++..... .-.+++ -..++|++ |.+++++-. -....|.|.|++.. ..+..+. +|...+
T Consensus 225 DLR~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~--~dS~~V~iLDiR~P~tpva~L~---------~H~a~VNg 292 (364)
T KOG0290|consen 225 DLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFA--MDSNKVVILDIRVPCTPVARLR---------NHQASVNG 292 (364)
T ss_pred Eecccccc-eEEecCCCCCCcceeeccCcCCchHHhhhh--cCCceEEEEEecCCCcceehhh---------cCcccccc
Confidence 99872111 112222 14578888 456777652 33467999999853 3334443 565544
Q ss_pred EEEcCCC-CeEeecc-----EEEEcCCC------cceeeeccCCCce-EEEEec-CCCEEEEEe
Q 000177 1650 IHFSPSD-TMLLWNG-----ILWDRRNS------VPVHRFDQFTDHG-GGGFHP-AGNEVIINS 1699 (1922)
Q Consensus 1650 VaFSPdG-~lLaSgg-----rLWDlrtg------k~I~kf~gh~~~V-sVaFSP-dG~~LASGS 1699 (1922)
++|.|.. ..|.++| .+||+.+. .++..|. ..+.| .+.|+| .+.+|+++.
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence 9999976 5677888 89999853 2344444 33344 889985 467777765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-06 Score=111.53 Aligned_cols=275 Identities=15% Similarity=0.137 Sum_probs=171.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccC---CCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCC-
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSH---QAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIA- 1585 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH---ss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~- 1585 (1922)
.-..+.|+|=...++++...-.|+|||.+.++.+..|..+ ...|+.+++---.|..++++ ++||.|+||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 3456778887778888888889999999999998888544 35677775322234556666 569999999754311
Q ss_pred --CCcceEecc---c--------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1586 --GGPMHSFEG---C--------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1586 --gk~l~tf~g---h--------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.+.+..+.+ . --+.|.....+|+++ +.-..|+|||....+++..++- +.+.....++-
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t---Gd~r~IRIWDa~~E~~~~diP~------~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT---GDVRSIRIWDAHKEQVVADIPY------GSSTLVTALSA 1216 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec---CCeeEEEEEecccceeEeeccc------CCCccceeecc
Confidence 122333322 1 225676655555555 4568899999998888877751 11111122222
Q ss_pred -cCCCCeEeecc-----EEEEcCCCc---ceeeeccCCCc--e-EEEEecCCC-EEEEEe-----EEEecCCCeEE--EE
Q 000177 1653 -SPSDTMLLWNG-----ILWDRRNSV---PVHRFDQFTDH--G-GGGFHPAGN-EVIINS-----EVWDLRKFRLL--RS 1712 (1922)
Q Consensus 1653 -SPdG~lLaSgg-----rLWDlrtgk---~I~kf~gh~~~--V-sVaFSPdG~-~LASGS-----eIWDLrTgklL--~t 1712 (1922)
.+.|+.++.|- ++||.|... .+..+..|+.. | .+.+.++|. .|++|+ ++||+|..... -+
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 23356776543 999999753 57888888876 6 888888775 488888 59999973211 12
Q ss_pred EcCCC-----ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCC
Q 000177 1713 VPSLD-----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1713 l~gH~-----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdd 1787 (1922)
+..|. -+++..++....|++|+. ....++...+ + ....|+ |.+..--.-...+.+++++|.-
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~-----~l~~~k------~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-E-----QLNIIK------YNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-h-----hhcccc------cCcccccCcCCCcceeeecchh
Confidence 22222 378999999999999853 2222221110 0 111111 1111111123457899999998
Q ss_pred ceEEEEecCCCCCccceEEEEEecCC
Q 000177 1788 SFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1788 s~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
-.+|+. ..|+.|.||...+.
T Consensus 1364 ~llAaG------~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1364 LLLAAG------SADSTVSIYSCEKP 1383 (1387)
T ss_pred Hhhhhc------cCCceEEEeecCCc
Confidence 888753 45688999976543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.5e-06 Score=96.47 Aligned_cols=227 Identities=8% Similarity=0.151 Sum_probs=149.3
Q ss_pred CCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee
Q 000177 1552 APVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
..++.+ .|+.+..+|..|+..-.++|..... .++-....+ ..-+..--....++..+. ..-+.+++++++.+..+
T Consensus 6 ~ti~~~--~~Nqd~~~lsvGs~~Gyk~~~~~~~-~k~~~~~~~~~~IvEmLFSSSLvaiV~~-~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFI--GFNQDSTLLSVGSKDGYKIFSCSPF-EKCFSKDTEGVSIVEMLFSSSLVAIVSI-KQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeee--eeccceeEEEccCCCceeEEecCch-HHhhcccCCCeEEEEeecccceeEEEec-CCCceEEEEEcccCceE
Confidence 445666 6788888888877555678887651 222222222 222222223455555533 33467999999988777
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEeecc--EEEEcCCCcceeeeccC-CCce-EEEEec--CCCEEEEEe-----
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--ILWDRRNSVPVHRFDQF-TDHG-GGGFHP--AGNEVIINS----- 1699 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--rLWDlrtgk~I~kf~gh-~~~V-sVaFSP--dG~~LASGS----- 1699 (1922)
..+. -.+.+-.+.++.+.-.++--. +|||+++-++++++..- .+.. -++++| .+.|++--+
T Consensus 82 Ce~~--------fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 82 CEIF--------FPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEe--------cCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 6654 123333344444322222222 99999999999998765 2332 445555 455888766
Q ss_pred --EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-
Q 000177 1700 --EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV- 1774 (1922)
Q Consensus 1700 --eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv- 1774 (1922)
.|||+.+-+.+.++..|.. -+++||++|.+|++++. ..+.+|++...+.+.+..+.-
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe------------------KGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE------------------KGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc------------------CceEEEEEEcCCccEeeeeeCC
Confidence 3999999999999999988 69999999999999953 235678888777776655532
Q ss_pred --CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCCC
Q 000177 1775 --DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1775 --kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
-..|+.++|+|+..+|++.. +. .+|.+|.++...
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS----~T--eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASS----NT--ETVHIFKLEKVS 251 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEec----CC--CeEEEEEecccc
Confidence 22499999999999999873 22 467888776554
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-06 Score=103.93 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=103.0
Q ss_pred eecccCCccccccce---eeecCc-eeeEEecC-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec--cC
Q 000177 1478 KSTYSGVHRNRRDRQ---FVYSRF-RPWRTCRD-DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT--SH 1550 (1922)
Q Consensus 1478 ~~~~Gg~~g~r~dr~---fi~srf-rpirtLrg-H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~--gH 1550 (1922)
+...||.+.....|+ .+.++. +|++.... |. +.|.|++|.-..++|++|..+++|.+.|+.+.+.+..+. ..
T Consensus 70 ~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~-SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~ 148 (609)
T KOG4227|consen 70 FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHR-SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNN 148 (609)
T ss_pred EEeecCCcceeeeechHHHHhhcCCCCceeccCccc-cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCc
Confidence 344556554444444 345555 88887665 55 889999999999999999999999999999998887774 33
Q ss_pred CCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEe------ccceeEEEcCC-CCEEEEeecCCCCCeEEEE
Q 000177 1551 QAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSF------EGCKAARFSNS-GNLFAALPTETSDRGILLY 1622 (1922)
Q Consensus 1551 ss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf------~gh~sVaFSPD-G~~LaSgS~~S~DgtIrIW 1622 (1922)
.+.|+.+ ..+|..+++++ +.++.|.+||.+.. ..++..+ +..+.+.|+|. ..+|++. +..+-+-+|
T Consensus 149 ~~~VY~m--~~~P~DN~~~~~t~~~~V~~~D~Rd~-~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~---~~~~G~~~~ 222 (609)
T KOG4227|consen 149 RGDVYHM--DQHPTDNTLIVVTRAKLVSFIDNRDR-QNPISLVLPANSGKNFYTAEFHPETPALILVN---SETGGPNVF 222 (609)
T ss_pred ccceeec--ccCCCCceEEEEecCceEEEEeccCC-CCCCceeeecCCCccceeeeecCCCceeEEec---cccCCCCce
Confidence 4589999 77887777776 56999999999861 1122211 12377899995 4566665 555668899
Q ss_pred ECCC
Q 000177 1623 DIQT 1626 (1922)
Q Consensus 1623 DlrT 1626 (1922)
|++.
T Consensus 223 D~R~ 226 (609)
T KOG4227|consen 223 DRRM 226 (609)
T ss_pred eecc
Confidence 9874
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-06 Score=105.84 Aligned_cols=225 Identities=16% Similarity=0.196 Sum_probs=153.5
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCce----------------------------eeeccC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPL----------------------------ESCTSH 1550 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l----------------------------~tL~gH 1550 (1922)
.++.| +|. ..-+.|..+|||+|| +||.+--.|++||+..-... +++.-|
T Consensus 44 LiQdf-e~p-~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 44 LIQDF-EMP-TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHhc-CCc-cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 34444 355 667899999999965 78889999999998543210 011111
Q ss_pred CC-----------CeeEEEeeec-CCCcEEEEecCCcEEEeccCCCCCCcceEec----cceeEEEcCCCCEEEEeecCC
Q 000177 1551 QA-----------PVTLVQSHLS-GETQLLLSSSSQDVHLWNASSIAGGPMHSFE----GCKAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1551 ss-----------~VtsLq~afS-pDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S 1614 (1922)
.. .-..+ +++ +.-.+++.++...|.=+++.. |..+..|. +.++|..++...+|++| +
T Consensus 122 ak~G~hy~~RIP~~GRDm--~y~~~scDly~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~G---t 194 (703)
T KOG2321|consen 122 AKYGRHYRTRIPKFGRDM--KYHKPSCDLYLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACG---T 194 (703)
T ss_pred hhcCeeeeeecCcCCccc--cccCCCccEEEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEec---c
Confidence 11 01122 111 223355556666677788877 66666554 35899999988888888 8
Q ss_pred CCCeEEEEECCCCceeeeeccccccc--cCC--CCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-cCCCce
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNL--TGR--GHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-QFTDHG 1684 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~--~~~--gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-gh~~~V 1684 (1922)
.+|.|-.||.++...+.++....... .+. ...+..+.|+.+|-.++.|. .|||+++.+++..-+ +..-.|
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 89999999999998888876332211 111 11234499999988888655 899999998865332 223344
Q ss_pred -EEEEecC--CCEEEEEe----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEE
Q 000177 1685 -GGGFHPA--GNEVIINS----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1685 -sVaFSPd--G~~LASGS----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSg 1733 (1922)
.+.|.+. ++.|++.. +|||-.+|+....+..... +.+++-|++-+++++
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 8899877 56788777 5999999999888864443 889999988888887
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=112.59 Aligned_cols=161 Identities=16% Similarity=0.286 Sum_probs=121.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceeeec----cCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCC------
Q 000177 1518 LGDSSHIAVGSHTKELKIFDSNSSSPLESCT----SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGG------ 1587 (1922)
Q Consensus 1518 SPDG~lLASGS~DGtIkIWDl~tgk~l~tL~----gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk------ 1587 (1922)
.+.+--|+.|-..|.|.+.|....+..+-|. -....|++|.|..-.++.+|++-.+|.+.+||.....+.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3567788999999999999876533222221 124789999776666777887778999999976431000
Q ss_pred --------------------cceEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1588 --------------------PMHSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1588 --------------------~l~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
++..+. .++..+|+|||++|++. +.||.++|||..+.+.+..++
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~V---SqDGfLRvF~fdt~eLlg~mk--------- 329 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATV---SQDGFLRIFDFDTQELLGVMK--------- 329 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEE---ecCceEEEeeccHHHHHHHHH---------
Confidence 010000 13668999999999999 999999999999887766554
Q ss_pred CC--cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEec
Q 000177 1644 GH--AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1644 gh--~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSP 1690 (1922)
.| .--+++|||||++|+++| .+|.+..++.|..=++|..|| .|+|.|
T Consensus 330 SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 22 234599999999999999 899999999999999999999 899997
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=112.51 Aligned_cols=194 Identities=15% Similarity=0.208 Sum_probs=149.2
Q ss_pred ccceeeec-CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1489 RDRQFVYS-RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1489 ~dr~fi~s-rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
..+.|+|. .+..+++++.|. .|..+.|-|---+|++++..|.++.-|+.+|+.+..+..-.+.+..+ ..+|-+.+
T Consensus 190 K~y~yvYD~~GtElHClk~~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm--~qNP~NaV 265 (545)
T KOG1272|consen 190 KKYVYVYDNNGTELHCLKRHI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM--KQNPYNAV 265 (545)
T ss_pred hceEEEecCCCcEEeehhhcC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchh--hcCCccce
Confidence 33455665 356788888875 79999999999999999999999999999999999997778888888 77888888
Q ss_pred EEEe-cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1568 LLSS-SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1568 LaSS-sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
+-.| +.|+|.+|.... ..++..+-. +.++++.++|++++|+ +.|..++|||++....+.++.
T Consensus 266 ih~GhsnGtVSlWSP~s--kePLvKiLcH~g~V~siAv~~~G~YMaTt---G~Dr~~kIWDlR~~~ql~t~~-------- 332 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNS--KEPLVKILCHRGPVSSIAVDRGGRYMATT---GLDRKVKIWDLRNFYQLHTYR-------- 332 (545)
T ss_pred EEEcCCCceEEecCCCC--cchHHHHHhcCCCcceEEECCCCcEEeec---ccccceeEeeeccccccceee--------
Confidence 8776 599999999987 666655443 5889999999999999 899999999999877766664
Q ss_pred CCCcceEEEEcCCCCeEeecc---EEEEcC-CC--cceeeeccC--CCce-EEEEecCCCEEEEEe
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG---ILWDRR-NS--VPVHRFDQF--TDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg---rLWDlr-tg--k~I~kf~gh--~~~V-sVaFSPdG~~LASGS 1699 (1922)
..|....++||..|-+.++-| .||-=. .+ ..-..|-.| ...| .+.|.|-...|-+|.
T Consensus 333 tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 333 TPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred cCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 235666699999988888777 788532 21 121222222 2244 788888777666654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-05 Score=95.67 Aligned_cols=208 Identities=17% Similarity=0.199 Sum_probs=128.6
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CCceee---e--cc--------CCCCeeEEEeeecCCCcEEEEec--
Q 000177 1510 ALLTCITFLGDSSHIAVGSH-TKELKIFDSNS-SSPLES---C--TS--------HQAPVTLVQSHLSGETQLLLSSS-- 1572 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~t-gk~l~t---L--~g--------Hss~VtsLq~afSpDG~lLaSSs-- 1572 (1922)
.....++++|++++|+++.. +|+|.+|++.. |..... + .+ -.....++ .|+|++++++..+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v--~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV--VFSPDGRFVYVPDLG 164 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE--EE-TTSSEEEEEETT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE--EECCCCCEEEEEecC
Confidence 34667999999999999985 89999999976 433222 1 11 12345677 8999999888853
Q ss_pred CCcEEEeccCCCCCCcc--eEec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECC--CCce--eeeecccccccc
Q 000177 1573 SQDVHLWNASSIAGGPM--HSFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQ--TYQL--EAKLSDTSVNLT 1641 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l--~tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr--Tgk~--i~tL~d~s~~~~ 1641 (1922)
...|.+|++....++.. ..+. +-+.+.|+|++++++... ..+++|.+|++. ++.. +.++. .....
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~--~~~~~ 240 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTIS--TLPEG 240 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEE--SCETT
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEee--ecccc
Confidence 45799999976322221 1221 237899999999887662 567899999998 4432 22222 11111
Q ss_pred CCCC-cceEEEEcCCCCeEeecc------EEEEcC--CCc--ceeeeccCCC-ceEEEEecCCCEEEEEe------EEEe
Q 000177 1642 GRGH-AYSQIHFSPSDTMLLWNG------ILWDRR--NSV--PVHRFDQFTD-HGGGGFHPAGNEVIINS------EVWD 1703 (1922)
Q Consensus 1642 ~~gh-~~~vVaFSPdG~lLaSgg------rLWDlr--tgk--~I~kf~gh~~-~VsVaFSPdG~~LASGS------eIWD 1703 (1922)
..+. ...-+.++|+|++|.... .+|++. +++ .+..+..... +..+.|+|+|++|+++. .+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1122 233399999999887544 788883 343 3334433222 44899999999999988 2665
Q ss_pred c--CCCeEEEEE---cCCCceeEEE
Q 000177 1704 L--RKFRLLRSV---PSLDQTTITF 1723 (1922)
Q Consensus 1704 L--rTgklL~tl---~gH~~~sVaF 1723 (1922)
+ .+|.+.... ......||.|
T Consensus 321 ~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EeCCCCcEEEecccccCCCCEEEeC
Confidence 4 677765443 2223367766
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=106.42 Aligned_cols=257 Identities=16% Similarity=0.215 Sum_probs=152.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---------------ceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---------------PLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---------------~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
....|+.|+....+|+.|+.||.+||..+.+.. .-+++.||+..|.-+ .|+.+.+.|.||+ +
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vv--TWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVV--TWNENNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEE--EeccccccccccCCC
Confidence 468899999999999999999999999875421 124778999999999 8899999999986 9
Q ss_pred CcEEEeccCCCCCCcceEe------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1574 QDVHLWNASSIAGGPMHSF------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
|-|.+|-+-. +...-.. .-+.+++|+-+|..|+.. -.||.|.+=.+........ ...+...
T Consensus 93 GlIiVWmlyk--gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIv---YeDGavIVGsvdGNRIwgK--------eLkg~~l 159 (1189)
T KOG2041|consen 93 GLIIVWMLYK--GSWCEEMINNRNKSVVVSMSWNLDGTKICIV---YEDGAVIVGSVDGNRIWGK--------ELKGQLL 159 (1189)
T ss_pred ceEEEEeeec--ccHHHHHhhCcCccEEEEEEEcCCCcEEEEE---EccCCEEEEeeccceecch--------hcchhec
Confidence 9999999876 4322111 124789999999988877 6778777665553222111 0112233
Q ss_pred eEEEEcCCCCeEee---cc--EEEEcCCCcceeee------------ccCCCce-EEEEe--------cCCCEEEEEeE-
Q 000177 1648 SQIHFSPSDTMLLW---NG--ILWDRRNSVPVHRF------------DQFTDHG-GGGFH--------PAGNEVIINSE- 1700 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaS---gg--rLWDlrtgk~I~kf------------~gh~~~V-sVaFS--------PdG~~LASGSe- 1700 (1922)
.-+.|++|.+.++. .| ++||-.-. -..++ ..+...+ .+.|. |+...++++-.
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 34889999887763 33 78885521 11111 1111112 33332 45566666541
Q ss_pred --E---EecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-
Q 000177 1701 --V---WDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV- 1774 (1922)
Q Consensus 1701 --I---WDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv- 1774 (1922)
+ -+.....++-.-.+.......||++|.+++.+..+...+--.....-.+-+|+... +.++.+
T Consensus 239 Gr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i-----------~gtlkvp 307 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHI-----------VGTLKVP 307 (1189)
T ss_pred ceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhh-----------eEEEecC
Confidence 1 11111122211122333688999999999987543211110000000111222222 233333
Q ss_pred CCceEEEEEcCCCceEEEE
Q 000177 1775 DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1775 kr~I~dLa~SPdds~LAVV 1793 (1922)
...|..++|...|-.+|+.
T Consensus 308 g~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 308 GSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred CceeeeeEEcCCceEEEEE
Confidence 3458889998888777755
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=98.85 Aligned_cols=242 Identities=17% Similarity=0.199 Sum_probs=159.5
Q ss_pred EEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec--cceeEEEcCCCCEEEEee
Q 000177 1534 KIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE--GCKAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1534 kIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~--gh~sVaFSPDG~~LaSgS 1611 (1922)
.+|+..+...-..+..-.-++..+ .|||.|.+|++..-..|.+|+-.. ...+.+|. .+..+.|+|++++|.+=+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~--~~SP~G~~l~~~~~~~V~~~~g~~--~~~l~~~~~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYV--SESPLGTYLFSEHAAGVECWGGPS--KAKLVRFRHPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred EeecCccccccccccccCcchhhe--eecCcchheehhhccceEEccccc--hhheeeeecCCceecccCcccceeeeec
Confidence 345555554444555567788888 889999999999888899999887 33344443 368899999999999864
Q ss_pred cCC------------CCCeEEEEECCCCceeeeeccccccccCCCCcce-EEEEcCCCCeEe---ecc-EEEEcCCCc-c
Q 000177 1612 TET------------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS-QIHFSPSDTMLL---WNG-ILWDRRNSV-P 1673 (1922)
Q Consensus 1612 ~~S------------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~-vVaFSPdG~lLa---Sgg-rLWDlrtgk-~ 1673 (1922)
... .++.+.+||+.+|..+..+.-.. ..+..+ .+.|+-++.+++ ..+ +++++ ++. .
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~-----q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~ 164 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS-----QPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIE 164 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccC-----CcccccceeeeeecchhhhhhccCeEEEEec-CCccc
Confidence 332 24469999999999999886111 112344 699999998877 222 88987 432 1
Q ss_pred eeeeccCC-Cce-EEEEecCC--CEEEEEe----------EEEecCCCeEEEE--EcCCCceeEEEccCCCEEEEEEccC
Q 000177 1674 VHRFDQFT-DHG-GGGFHPAG--NEVIINS----------EVWDLRKFRLLRS--VPSLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1674 I~kf~gh~-~~V-sVaFSPdG--~~LASGS----------eIWDLrTgklL~t--l~gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
.+-|.... ..+ ...|+|-| ..|+.=. +||.+..+..+.+ +...+.+.+.|++.|++++.-....
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 22222222 334 67888864 3444433 4888876666544 3344558999999999998642111
Q ss_pred chhhhhhhcccccccCC-cceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1738 LEDVMSAVHTRRVKHPL-FAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1738 ~~dv~s~lh~rr~ksp~-~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
...-++-+ .+.+.+++....+--...+.+.+|.+++|+|.+..+++|.
T Consensus 245 ---------~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 245 ---------TKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ---------eecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEe
Confidence 10111111 2556666655443333336688999999999999999986
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-06 Score=104.26 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=134.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceeeec--cC-CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc
Q 000177 1518 LGDSSHIAVGSHTKELKIFDSNSSSPLESCT--SH-QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG 1594 (1922)
Q Consensus 1518 SPDG~lLASGS~DGtIkIWDl~tgk~l~tL~--gH-ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g 1594 (1922)
.|-+.++|..+.||.++||+..+++....|. .| ++..++. .|.+.- ...|.....-
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~--------------------~w~L~~-~~s~~k~~~~ 60 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYT--------------------KWGLSA-DYSPMKWLSL 60 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeE--------------------EEEEEe-ccchHHHHhH
Confidence 3456789999999999999999888766552 11 2222233 333322 0122221111
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEE
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWD 1667 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWD 1667 (1922)
.+...-+.+-..++-| ...|.|.+|++..|+...++. ..+|..++ +.++.+-..|.+++ ..|+
T Consensus 61 ~~~~~~s~~t~~lvlg---t~~g~v~~ys~~~g~it~~~s-------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 61 EKAKKASLDTSMLVLG---TPQGSVLLYSVAGGEITAKLS-------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL 130 (541)
T ss_pred HHHhhccCCceEEEee---cCCccEEEEEecCCeEEEEEe-------cCCCCCcceeeecccccCceEecCCceeEEEEe
Confidence 1111223344567777 778999999999999888775 12455444 77788888888887 8999
Q ss_pred cCCCcceeeeccCCCce-EEEEecCCCEEEEEe---EEEecCCCeEEEEEcCCCc--eeEEEccC-----CCEEEEE
Q 000177 1668 RRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---EVWDLRKFRLLRSVPSLDQ--TTITFNAR-----GDVIYAI 1733 (1922)
Q Consensus 1668 lrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~tl~gH~~--~sVaFSPd-----G~~LaSg 1733 (1922)
...++.++.+...+..+ +++.+|||..+++++ ++||+.+.+.+.+|.||.. +++.|--+ |.++.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 131 EKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred cccceeeeeeccCCCccceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 99999999999888777 999999999999999 5999999999999999987 78888776 7777765
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.1e-05 Score=89.92 Aligned_cols=209 Identities=15% Similarity=0.240 Sum_probs=140.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--ec------CCcEEEeccC
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--SS------SQDVHLWNAS 1582 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--Ss------DgtVkLWDl~ 1582 (1922)
....++|+.|...+++|..+| .+||+++..+...+-.-+.+.+.-+.+-| ..++|+- |. -..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 456799999999999998888 69999987555433333333333222223 2234433 32 2479999954
Q ss_pred CCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECC-CCceeeeeccccccccCCCCcceEEEEcCCC--
Q 000177 1583 SIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD-- 1656 (1922)
Q Consensus 1583 t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG-- 1656 (1922)
. ..++.++. .+..+.+.++ +|+.. ..+.|.||... .-+.+..+. +. ..+...++..|.-
T Consensus 84 k--~~~i~el~f~~~I~~V~l~r~--riVvv----l~~~I~VytF~~n~k~l~~~e-t~------~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 84 K--ERCIIELSFNSEIKAVKLRRD--RIVVV----LENKIYVYTFPDNPKLLHVIE-TR------SNPKGLCSLCPTSNK 148 (346)
T ss_pred c--CcEEEEEEeccceeeEEEcCC--eEEEE----ecCeEEEEEcCCChhheeeee-cc------cCCCceEeecCCCCc
Confidence 4 56665553 3678888764 45543 35789999987 455555554 11 1122234455433
Q ss_pred CeEeecc------EEEEcCCCcc--eeeeccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEc-CCCc--
Q 000177 1657 TMLLWNG------ILWDRRNSVP--VHRFDQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVP-SLDQ-- 1718 (1922)
Q Consensus 1657 ~lLaSgg------rLWDlrtgk~--I~kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~-gH~~-- 1718 (1922)
.+|+.-| .|-|+...+. ...+..|...| +++.+-+|..||++| +|||..+|+++..+. |.+.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 3454333 7888876544 46678899989 999999999999999 699999999999987 3322
Q ss_pred -eeEEEccCCCEEEEEEccC
Q 000177 1719 -TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1719 -~sVaFSPdG~~LaSgs~~d 1737 (1922)
.+++|||++.+|++++...
T Consensus 229 iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EEEEEeCCCccEEEEEcCCC
Confidence 8999999999999986544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.6e-05 Score=90.17 Aligned_cols=215 Identities=13% Similarity=0.136 Sum_probs=146.1
Q ss_pred EEEEcC-CCCEEEEEeCCCc-EEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe------cCCcEEEeccCCCC
Q 000177 1514 CITFLG-DSSHIAVGSHTKE-LKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS------SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DGt-IkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS------sDgtVkLWDl~t~~ 1585 (1922)
.++.+| ++..++.+-.-|+ ..+||..+++....+....+.-+.=.-.||+||++|.+. ..|.|-|||... .
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-G 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-C
Confidence 377888 6667788888775 578999999887665433222221111799999999986 256799999983 1
Q ss_pred CCcceEeccc----eeEEEcCCCCEEEEeecC---------------CCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1586 GGPMHSFEGC----KAARFSNSGNLFAALPTE---------------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaFSPDG~~LaSgS~~---------------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.+.+..|..+ +.+.+.|||+.|+.+-.+ +.+-.+.+.|..+|+.+....-+ ...+..+
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp---~~~~~lS 164 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP---PDLHQLS 164 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC---ccccccc
Confidence 4555666643 778999999888876221 13445666777888877664300 0001112
Q ss_pred ceEEEEcCCCCeEeecc----------EEEEcCCCcceeeec-------cCCCce-EEEEecCCCEEEEEe------EEE
Q 000177 1647 YSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFD-------QFTDHG-GGGFHPAGNEVIINS------EVW 1702 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~-------gh~~~V-sVaFSPdG~~LASGS------eIW 1702 (1922)
..-++++++|..++..- .+.-.+.+..+.-+. ...+.+ +|+|+++|.++++.+ -+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 23399999988776332 344444444443332 345667 999999999998888 399
Q ss_pred ecCCCeEEEEEcCCCceeEEEccCCCEEEEE
Q 000177 1703 DLRKFRLLRSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1703 DLrTgklL~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
|..+++++....-.+.|.|+-.+++ ++++.
T Consensus 245 d~~tg~~~~~~~l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 245 DAATGRLLGSVPLPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred ECCCCCEeeccccCceeeeeecCCc-eEEeC
Confidence 9999999999888888999998888 66654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.4e-07 Score=118.98 Aligned_cols=204 Identities=20% Similarity=0.323 Sum_probs=153.2
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
.|- ..|.++.=+|...+-+||+.||.|++|....++.+..+ .+-...|+.+ .|+.+|..+..+ .||.+.+|.+.
T Consensus 2206 ~~v-~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~--~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2206 HPV-ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS--RFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred ccc-CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh--hhcccCCceeeeccCCceeecccC-
Confidence 344 66888888888889999999999999999999888877 3334788888 788888877776 59999999997
Q ss_pred CCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1584 IAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1584 ~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
.++...++.| +.+.|-. ..+++.+..+.++.+.+||..-.....-+. ..|.+...++++-|.-+++
T Consensus 2282 --pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~------~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2282 --PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH------TCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred --CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee------eecCCCceEEEEcCcceEE
Confidence 3566666665 4455554 667777777788999999976322111111 2245667779999999999
Q ss_pred eecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCC
Q 000177 1660 LWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGD 1728 (1922)
Q Consensus 1660 aSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~ 1728 (1922)
++|| ++||++..+.+|+|+. ++ ...++++|+ +||++....++++++.... ..+ |-..|.
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf-Fr~~g~ 2421 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF-FRNIGM 2421 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch-hhhcCc
Confidence 9999 8999999999999976 44 456777777 6999999999999884323 344 655565
Q ss_pred EEEEE
Q 000177 1729 VIYAI 1733 (1922)
Q Consensus 1729 ~LaSg 1733 (1922)
.+..+
T Consensus 2422 Q~~v~ 2426 (2439)
T KOG1064|consen 2422 QINVG 2426 (2439)
T ss_pred eeeec
Confidence 55444
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-06 Score=103.35 Aligned_cols=161 Identities=15% Similarity=0.276 Sum_probs=126.9
Q ss_pred EEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEec---------
Q 000177 1524 IAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFE--------- 1593 (1922)
Q Consensus 1524 LASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~--------- 1593 (1922)
|++++....|+-+|++.|..+.-|.-..+++++| ..++-..+|++|. +|.|-.||.++ ...+.++.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v--~in~~hgLla~Gt~~g~VEfwDpR~--ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV--SINEEHGLLACGTEDGVVEFWDPRD--KSRVGTLDAASSVNSHP 223 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceee--eecCccceEEecccCceEEEecchh--hhhheeeecccccCCCc
Confidence 5556666679999999999999998778999999 7889999999976 99999999987 33333332
Q ss_pred ------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCC--CCeEeecc
Q 000177 1594 ------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPS--DTMLLWNG 1663 (1922)
Q Consensus 1594 ------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPd--G~lLaSgg 1663 (1922)
.++++.|+.+|-.+++| +..|.|.|||+++.+++..-. |++..++ +.|.+. +..|++..
T Consensus 224 g~~~~~svTal~F~d~gL~~aVG---ts~G~v~iyDLRa~~pl~~kd--------h~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVG---TSTGSVLIYDLRASKPLLVKD--------HGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred cccccCcceEEEecCCceeEEee---ccCCcEEEEEcccCCceeecc--------cCCccceeeecccccCCCceEEecc
Confidence 14789999999999998 889999999999988776543 4555554 888776 45677766
Q ss_pred ----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1664 ----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+|||-.+|++...+..-.....+|+-|++-.+.++.
T Consensus 293 k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence 999999999988776555433788889887777775
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-05 Score=100.97 Aligned_cols=253 Identities=13% Similarity=0.167 Sum_probs=152.8
Q ss_pred CcEEEEECCCC-CceeeeccCCCCeeEEEeeecCCC-cEEEEec-CCcEEEeccCCCCCCcceEec--c------ceeEE
Q 000177 1531 KELKIFDSNSS-SPLESCTSHQAPVTLVQSHLSGET-QLLLSSS-SQDVHLWNASSIAGGPMHSFE--G------CKAAR 1599 (1922)
Q Consensus 1531 GtIkIWDl~tg-k~l~tL~gHss~VtsLq~afSpDG-~lLaSSs-DgtVkLWDl~t~~gk~l~tf~--g------h~sVa 1599 (1922)
+.+.||++... ++...+. -...|+++ .|+|.. .+|++|. +|.|.+||++.....+...+. . ++.+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~--~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCL--KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEE--EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 47999999765 4445554 35789999 777754 4555554 999999999873222122221 1 26677
Q ss_pred EcCC--CCEEEEeecCCCCCeEEEEECCCCce-eeeec-cccc---cccCCCCcceEEEEcCCCCe-Eeecc---EEEE-
Q 000177 1600 FSNS--GNLFAALPTETSDRGILLYDIQTYQL-EAKLS-DTSV---NLTGRGHAYSQIHFSPSDTM-LLWNG---ILWD- 1667 (1922)
Q Consensus 1600 FSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~-d~s~---~~~~~gh~~~vVaFSPdG~l-LaSgg---rLWD- 1667 (1922)
|-.+ +.-|+++ +.||.|+.|+++.-.. ...+. .... ......+...++.|.|.... ++.|+ .|+-
T Consensus 299 W~~~~~~~~f~s~---ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 299 WLQNEHNTEFFSL---SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EeccCCCCceEEE---ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 8664 3448888 7799999998875332 11111 0000 01112344556899887643 33443 5554
Q ss_pred cCCC---------cceeeeccCCCce-EEEEecCCC-EEEEEe----EEEecC-CCeEEEEEcCCCc--eeEEEccCCCE
Q 000177 1668 RRNS---------VPVHRFDQFTDHG-GGGFHPAGN-EVIINS----EVWDLR-KFRLLRSVPSLDQ--TTITFNARGDV 1729 (1922)
Q Consensus 1668 lrtg---------k~I~kf~gh~~~V-sVaFSPdG~-~LASGS----eIWDLr-TgklL~tl~gH~~--~sVaFSPdG~~ 1729 (1922)
-+.+ +.+..+..|.+.+ ++.++|=+. .+.+++ +||... ...++..+..+.. ++++|||.-..
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 2222 1233555667777 889999765 344444 699887 5566666655444 78999999887
Q ss_pred EEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1730 IYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1730 LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
++++.+.++.-..|.+. ..+..++.+..... ....+.|++.++.+++-. ..+.+.+|
T Consensus 456 vF~~~d~~G~l~iWDLl----------------~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd------~~G~~~~~ 513 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLL----------------QDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD------ANGTTHIL 513 (555)
T ss_pred EEEEEcCCCceehhhhh----------------ccccCCcccccccccccceeecCCCCcEEEEec------CCCcEEEE
Confidence 77775543322222221 23344555554443 366778889999988652 33678888
Q ss_pred Eec
Q 000177 1809 EIG 1811 (1922)
Q Consensus 1809 EVG 1811 (1922)
++.
T Consensus 514 ~l~ 516 (555)
T KOG1587|consen 514 KLS 516 (555)
T ss_pred EcC
Confidence 874
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-06 Score=103.89 Aligned_cols=189 Identities=17% Similarity=0.160 Sum_probs=123.1
Q ss_pred cccCCccccccceeeecCceeeEEec-CCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC----------Cceee
Q 000177 1480 TYSGVHRNRRDRQFVYSRFRPWRTCR-DDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSS----------SPLES 1546 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~srfrpirtLr-gH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tg----------k~l~t 1546 (1922)
..|..+....+|.. .+.++++.+. ||. ..|.|++|-| +.++++||..|..|++||+... .....
T Consensus 66 ~SGSDD~r~ivWd~--~~~KllhsI~TgHt-aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~ 142 (758)
T KOG1310|consen 66 ASGSDDTRLIVWDP--FEYKLLHSISTGHT-ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRC 142 (758)
T ss_pred eecCCcceEEeecc--hhcceeeeeecccc-cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhh
Confidence 34444444444443 3666666664 799 9999999999 5679999999999999999742 33456
Q ss_pred eccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEeccCCCCCCcceEe------c-------cceeEEEcCC-CCEEEEe
Q 000177 1547 CTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLWNASSIAGGPMHSF------E-------GCKAARFSNS-GNLFAAL 1610 (1922)
Q Consensus 1547 L~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLWDl~t~~gk~l~tf------~-------gh~sVaFSPD-G~~LaSg 1610 (1922)
+.+|...|..| +..|++ +.+.+ +.||+|+-+|++... .|.... . ...++..+|. ..+|+.|
T Consensus 143 ~~cht~rVKri--a~~p~~PhtfwsasEDGtirQyDiREph-~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 143 WSCHTDRVKRI--ATAPNGPHTFWSASEDGTIRQYDIREPH-VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred hhhhhhhhhhe--ecCCCCCceEEEecCCcceeeecccCCc-cCCccccccHHHHHhchhhheeeeeeecCCCCceEEec
Confidence 78999999999 667777 44444 679999999998621 111111 1 1278999995 5677777
Q ss_pred ecCCCCCeEEEEECCCCc------------------eeeeeccccc-cccC-CCCcceE---EEEcCCCCeEe-e-cc--
Q 000177 1611 PTETSDRGILLYDIQTYQ------------------LEAKLSDTSV-NLTG-RGHAYSQ---IHFSPSDTMLL-W-NG-- 1663 (1922)
Q Consensus 1611 S~~S~DgtIrIWDlrTgk------------------~i~tL~d~s~-~~~~-~gh~~~v---VaFSPdG~lLa-S-gg-- 1663 (1922)
+.|-.+++||.+... |+.-|.+..+ +..+ ..+...+ ++|+|+|.-|+ + +|
T Consensus 220 ---gsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEh 296 (758)
T KOG1310|consen 220 ---GSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEH 296 (758)
T ss_pred ---CCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeE
Confidence 889999999954211 1111111111 0000 1111111 89999996554 3 34
Q ss_pred -EEEEcCCCcceeee
Q 000177 1664 -ILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1664 -rLWDlrtgk~I~kf 1677 (1922)
+++|+..++....|
T Consensus 297 VYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 297 VYLFDVNEDKSPTPY 311 (758)
T ss_pred EEEEeecCCCCceee
Confidence 89999988765544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=98.20 Aligned_cols=147 Identities=18% Similarity=0.266 Sum_probs=106.8
Q ss_pred CCEEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCC----------ceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCc
Q 000177 1510 ALLTCITFLG-DSS--HIAVGSHTKELKIFDSNSSS----------PLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQD 1575 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~--lLASGS~DGtIkIWDl~tgk----------~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgt 1575 (1922)
+.|.|..+.. +++ +|+.|-.+|.|.+||+.++. ....+..|..+|.++ .|.+.-.-=++ |.+..
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl--dyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL--DYASSCDRGISGGADDK 228 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee--eechhhcCCcCCCcccc
Confidence 6678877554 343 66788899999999999873 334456799999999 44332111122 34667
Q ss_pred EEEeccCCCCCCcc----eEe--ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1576 VHLWNASSIAGGPM----HSF--EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l----~tf--~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
+..|+++...+.+. .++ .|+..+.+-||++.++++ +.|+.|+||..++.+.+..++ .|...++.
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATA---GWD~RiRVyswrtl~pLAVLk-------yHsagvn~ 298 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATA---GWDHRIRVYSWRTLNPLAVLK-------YHSAGVNA 298 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeec---ccCCcEEEEEeccCCchhhhh-------hhhcceeE
Confidence 88888865222221 122 246789999999999999 999999999999999888775 23445566
Q ss_pred EEEcCCCCeEeecc-----EEEEc
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDR 1668 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDl 1668 (1922)
++|+|+..+++.++ .+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 99999999999888 78875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00043 Score=84.96 Aligned_cols=251 Identities=10% Similarity=0.110 Sum_probs=150.2
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--e---------cCCcEEEeccCCCCCCcceEecc-----
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--S---------SSQDVHLWNASSIAGGPMHSFEG----- 1594 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--S---------sDgtVkLWDl~t~~gk~l~tf~g----- 1594 (1922)
++|.+.|..+++.+.++..-..+-. .+|||++.|.. + .+..|.+||..+ .+.+..+.-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~----~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP----VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce----eECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCch
Confidence 8999999999998888843222221 24899987765 4 467899999998 777766642
Q ss_pred ------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-EEEE
Q 000177 1595 ------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-ILWD 1667 (1922)
Q Consensus 1595 ------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-rLWD 1667 (1922)
-..++++|||++++.. ..+.+..|.++|+.+++.+..+.-+. ...++..+.+..++.+.. .+..
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~-n~~p~~~V~VvD~~~~kvv~ei~vp~--------~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFY-QFSPSPAVGVVDLEGKAFVRMMDVPD--------CYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred hhccCccceEEECCCCCEEEEe-cCCCCCEEEEEECCCCcEEEEEeCCC--------CcEEEEecCCccEEEeecCceEE
Confidence 1478999999998876 22448999999999999999886211 111122322222222211 1000
Q ss_pred --c-CCCc----ceeeeccCCCce--EEEEec-CCCEEEEEeE----EEecC-----CCeEEEEEcCCC---c------e
Q 000177 1668 --R-RNSV----PVHRFDQFTDHG--GGGFHP-AGNEVIINSE----VWDLR-----KFRLLRSVPSLD---Q------T 1719 (1922)
Q Consensus 1668 --l-rtgk----~I~kf~gh~~~V--sVaFSP-dG~~LASGSe----IWDLr-----TgklL~tl~gH~---~------~ 1719 (1922)
+ .+|+ ....|+.....+ .-.|.+ +|.++....+ +.|+. ..+.+..+.... . .
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 0 0111 111122211111 114455 7776655542 44532 222233222110 0 2
Q ss_pred eEEEccCCCEEEEEEccCchhhhhhhcccccccC-CcceEEEEecCCCceeeeeccCCceEEEEEcCCCc-eEEEEecCC
Q 000177 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHP-LFAAFRTVDAINYSDIATIPVDRCVLDFATERTDS-FVGLITMDD 1797 (1922)
Q Consensus 1720 sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp-~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds-~LAVVe~dd 1797 (1922)
-++++|+|+.+|........ + .|. -.+.+.++|..+.+.+..+.+...++.++++|+++ .+.+....
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~--~--------thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~- 320 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAK--W--------THKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG- 320 (352)
T ss_pred eEEEcCCCCEEEEEecCCcc--c--------cccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC-
Confidence 49999999999985322111 0 111 23578899999999999999999999999999999 55554311
Q ss_pred CCCccceEEEEEec
Q 000177 1798 QEDMFSSARIYEIG 1811 (1922)
Q Consensus 1798 s~d~dSsVRLyEVG 1811 (1922)
.+.+.++++.
T Consensus 321 ----s~~VsViD~~ 330 (352)
T TIGR02658 321 ----DKTLYIFDAE 330 (352)
T ss_pred ----CCcEEEEECc
Confidence 2345566553
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00034 Score=85.86 Aligned_cols=245 Identities=14% Similarity=0.099 Sum_probs=140.2
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCceeeeccCCC-----CeeEEEee
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH----------TKELKIFDSNSSSPLESCTSHQA-----PVTLVQSH 1560 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~----------DGtIkIWDl~tgk~l~tL~gHss-----~VtsLq~a 1560 (1922)
..++.+.++..-. .+ ..+ +||||+.|+++.. +..|.+||+.+++.+..+.--.. ......+.
T Consensus 35 ~~~~v~g~i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 35 EAGRVLGMTDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred CCCEEEEEEEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEE
Confidence 3555566555311 11 124 9999998887766 78999999999999887752111 11111237
Q ss_pred ecCCCcEEEEe--c-CCcEEEeccCCCCCCcceEecc--cee-EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1561 LSGETQLLLSS--S-SQDVHLWNASSIAGGPMHSFEG--CKA-ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1561 fSpDG~lLaSS--s-DgtVkLWDl~t~~gk~l~tf~g--h~s-VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
++|||++|..+ + +..|.++|+.+ ++.+.++.- +.. ...+.+..+ +.| .|+.....-+.+.....+-.
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~~~~vy~t~e~~~~-~~~----~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPDCYHIFPTANDTFF-MHC----RDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCCCcEEEEecCCccE-EEe----ecCceEEEEecCCCceEEee
Confidence 89999988864 3 88999999998 776666542 111 112222222 111 23333322222111111100
Q ss_pred cccccc---cCCCCcceEEEEcC-CCCeEeecc----EEEEcCC-----CcceeeeccCC---Cc----e-EEEEecCCC
Q 000177 1635 DTSVNL---TGRGHAYSQIHFSP-SDTMLLWNG----ILWDRRN-----SVPVHRFDQFT---DH----G-GGGFHPAGN 1693 (1922)
Q Consensus 1635 d~s~~~---~~~gh~~~vVaFSP-dG~lLaSgg----rLWDlrt-----gk~I~kf~gh~---~~----V-sVaFSPdG~ 1693 (1922)
.+.... ....++ .|.+ +|+++.... .+.|+.. .+.+..+.... ++ . -++++|+|+
T Consensus 185 ~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 185 TEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 000000 000111 3445 676665333 5556332 22333322111 11 1 489999999
Q ss_pred EEEEE-------------eE--EEecCCCeEEEEEc-CCCceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcc
Q 000177 1694 EVIIN-------------SE--VWDLRKFRLLRSVP-SLDQTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFA 1756 (1922)
Q Consensus 1694 ~LASG-------------Se--IWDLrTgklL~tl~-gH~~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~s 1756 (1922)
.+... .+ ++|..+++.+..++ ++..+.++|+|+|+ .+++... ...
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~------------------~s~ 322 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST------------------GDK 322 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC------------------CCC
Confidence 88773 23 67899999999988 55569999999999 8887732 123
Q ss_pred eEEEEecCCCceeeee
Q 000177 1757 AFRTVDAINYSDIATI 1772 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTi 1772 (1922)
.+.++|..+.+.+.++
T Consensus 323 ~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 323 TLYIFDAETGKELSSV 338 (352)
T ss_pred cEEEEECcCCeEEeee
Confidence 4678888888888877
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-05 Score=96.65 Aligned_cols=138 Identities=11% Similarity=0.163 Sum_probs=90.5
Q ss_pred CEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec---CCcEEEeccC
Q 000177 1511 LLTCITFLGDSSH-IAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS---SQDVHLWNAS 1582 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~l-LASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss---DgtVkLWDl~ 1582 (1922)
.+..-.|||||+. ++..+.+ ..|.++|+.+++...... ..+.+... .|+|||+.|+. .+ +..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~--~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVS--DVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEee--EECCCCCEEEEEEccCCCcEEEEEECC
Confidence 5678999999985 6654443 568999998887644333 34445555 78999986654 22 4568888887
Q ss_pred CCCCCc--ceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1583 SIAGGP--MHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1583 t~~gk~--l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
. +.. +....+ .....|+|||+.|+..+.......|.++|+.+++...... .+.. ...|+|+|++|
T Consensus 266 ~--g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--------~g~~--~~~~SPDG~~I 333 (419)
T PRK04043 266 T--KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--------HGKN--NSSVSTYKNYI 333 (419)
T ss_pred C--CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--------CCCc--CceECCCCCEE
Confidence 6 332 222222 3557899999988887544444478888998877643322 1211 24899999988
Q ss_pred eecc
Q 000177 1660 LWNG 1663 (1922)
Q Consensus 1660 aSgg 1663 (1922)
+...
T Consensus 334 a~~~ 337 (419)
T PRK04043 334 VYSS 337 (419)
T ss_pred EEEE
Confidence 7543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.5e-05 Score=92.89 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=103.3
Q ss_pred CeeEEEeeecCCCcE-EEE-ec---CCcEEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1553 PVTLVQSHLSGETQL-LLS-SS---SQDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~l-LaS-Ss---DgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
.+..- .|+|||+. ++. +. ...|.++|+.+...+.+..+.+. ....|+|||+.++.......+..|.++|+.+
T Consensus 189 ~~~~p--~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFP--KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeE--EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 44444 89999984 543 42 45699999987222233344443 4578999999887654444567789999988
Q ss_pred CceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeee-ccCCCceEEEEecCCCEEEE
Q 000177 1627 YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRF-DQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1627 gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf-~gh~~~VsVaFSPdG~~LAS 1697 (1922)
++... +.. ..+ ......|+|||+.|+-.+ .++|+.+++..+.. .+.. ...|+|+|++|+.
T Consensus 267 g~~~~-LT~------~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~~~SPDG~~Ia~ 335 (419)
T PRK04043 267 KTLTQ-ITN------YPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NSSVSTYKNYIVY 335 (419)
T ss_pred CcEEE-ccc------CCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---CceECCCCCEEEE
Confidence 76433 331 011 112267999998777333 66777776653322 2221 2489999998876
Q ss_pred EeE--------------EEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEE
Q 000177 1698 NSE--------------VWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1698 GSe--------------IWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs 1734 (1922)
.+. +.|+.++.. +.+... ......|+|||+.|+...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEE
Confidence 651 235555543 333322 224689999999888763
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.7e-06 Score=94.94 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=112.3
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCC--CceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS-NSS--SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl-~tg--k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
..+.++|..|. ..|++|.|+|..+.|++|+.|..-+||.. ..+ ++...+.-|+..+++| .|+|.++.+++++ -
T Consensus 45 w~~~htls~Hd-~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V--~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 45 WEPAHTLSEHD-KIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCV--KWSPKENKFAVGSGA 121 (361)
T ss_pred ceeceehhhhC-cceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeE--eecCcCceEEeccCc
Confidence 56788999999 99999999999999999999999999998 333 3445667799999999 7899999999855 7
Q ss_pred CcEEEeccCCCCCC--cceE---e-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc---------
Q 000177 1574 QDVHLWNASSIAGG--PMHS---F-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV--------- 1638 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk--~l~t---f-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~--------- 1638 (1922)
..|.||=++..+.= ..+. + ..+.++.|||++-.+++| +.|+..++|..--......-.++.+
T Consensus 122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG---s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l 198 (361)
T KOG1523|consen 122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG---STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL 198 (361)
T ss_pred cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc---ccCcceeEEEEeeeccccCCCCCCCccCCcHHHH
Confidence 78888877652110 0011 1 125899999999999998 8899999986421100000000000
Q ss_pred ccc--CCCCcceEEEEcCCCCeEeecc
Q 000177 1639 NLT--GRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1639 ~~~--~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
... ..+.-...+.|+|+|..|+..+
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred HHhhccCCCceeeeEeCCCCCEeeEec
Confidence 000 1112223399999999998666
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.7e-06 Score=103.33 Aligned_cols=170 Identities=15% Similarity=0.272 Sum_probs=120.8
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CCceeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-------SSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-------gk~l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
+..|.||+ ..|..++--.+.+-++++|+|++||+|.+.. ..+..+++.|+.+|.++ .|-.+.+++++ .|
T Consensus 728 L~nf~GH~-~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~i--gfL~~lr~i~S-cD 803 (1034)
T KOG4190|consen 728 LCNFTGHQ-EKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDI--GFLADLRSIAS-CD 803 (1034)
T ss_pred eecccCcH-HHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccce--eeeeccceeee-cc
Confidence 34678999 8899988777888899999999999999853 34677899999999999 77777766654 57
Q ss_pred CcEEEeccCCCCCCcceEecc------ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG------CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g------h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+.|.+||.-. ++++..... ...+.--++ ...++.+ + +...+|+++|.+.+.....+. ..+..+.+.
T Consensus 804 ~giHlWDPFi--gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-c-saeSTVKl~DaRsce~~~E~k--Vcna~~Pna 877 (1034)
T KOG4190|consen 804 GGIHLWDPFI--GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-C-SAESTVKLFDARSCEWTCELK--VCNAPGPNA 877 (1034)
T ss_pred Ccceeecccc--cchhHhhhcCcccCCCceeEecccCcchheeee-c-cchhhheeeecccccceeeEE--eccCCCCch
Confidence 7799999865 555543321 122322332 3333333 1 677899999999887666654 122222334
Q ss_pred cceEEEEcCCCCeEe---ecc--EEEEcCCCcceeeeccC
Q 000177 1646 AYSQIHFSPSDTMLL---WNG--ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLa---Sgg--rLWDlrtgk~I~kf~gh 1680 (1922)
...+++..|.|++++ +.| .+.|.|+|+.|..+...
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 445599999999987 334 89999999988877543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.9e-06 Score=109.31 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=108.9
Q ss_pred ecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEE
Q 000177 1479 STYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLV 1557 (1922)
Q Consensus 1479 ~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsL 1557 (1922)
-..|...+...+|.+. ..-+|+ -+.||. +.|..+.|+-||.++++.|.|.++++|++++.+... +.-+|+..|+.+
T Consensus 148 i~~gsv~~~iivW~~~-~dn~p~-~l~GHe-G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPH-EDNKPI-RLKGHE-GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEeccccccEEEEecc-ccCCcc-eecccC-CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 3445555566677775 333444 478999 999999999999999999999999999999998776 778999999999
Q ss_pred EeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc-----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1558 QSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC-----KAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1558 q~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh-----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
.|.|+ .++| |.|.+.++|+.+ +..+..+.+| +.++.+++.-..+|+ +.|+.+++||...
T Consensus 225 --~~~~n--~i~t~gedctcrvW~~~---~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~---g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 --CFLPN--RIITVGEDCTCRVWGVN---GTQLEVYDEHSGKGIWKIAVPIGVIIKVTG---GNDSTLKLWDLNG 289 (967)
T ss_pred --Eeccc--eeEEeccceEEEEEecc---cceehhhhhhhhcceeEEEEcCCceEEEee---ccCcchhhhhhhc
Confidence 78887 5555 779999999876 3445566554 888999988888998 8899999999864
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.3e-06 Score=94.60 Aligned_cols=219 Identities=17% Similarity=0.306 Sum_probs=139.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----ceeeeccCC------------CCeeEEEee-ecCCCcEEEEe
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-----PLESCTSHQ------------APVTLVQSH-LSGETQLLLSS 1571 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-----~l~tL~gHs------------s~VtsLq~a-fSpDG~lLaSS 1571 (1922)
+.|+++.|...|.+|++|...|.|.+|.-.... ....|++|. ..|..|.|. -..-..+|+++
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 679999999999999999999999999754322 223456664 346777551 12234588889
Q ss_pred cCCcEEEeccCCCC-----------------CCcceEec------------------------cc----eeEEEcCCCCE
Q 000177 1572 SSQDVHLWNASSIA-----------------GGPMHSFE------------------------GC----KAARFSNSGNL 1606 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~-----------------gk~l~tf~------------------------gh----~sVaFSPDG~~ 1606 (1922)
.|.+|+||.+.... +.++.+.+ .| +++.|+.|...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 99999999986410 11111100 01 56888888888
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeecc---ccccccCCCCcceEEEEcCCCCeEe--ecc----EEEEcCCCcc----
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLSD---TSVNLTGRGHAYSQIHFSPSDTMLL--WNG----ILWDRRNSVP---- 1673 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~d---~s~~~~~~gh~~~vVaFSPdG~lLa--Sgg----rLWDlrtgk~---- 1673 (1922)
+++ ..|-.|.+|++.-.....++-+ ..+.. .-..+....|+|....++ +.+ ++-|+|....
T Consensus 187 ~lS----aDdLrINLWnl~i~D~sFnIVDiKP~nmee--LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 187 LLS----ADDLRINLWNLEIIDGSFNIVDIKPHNMEE--LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eee----ccceeeeeccccccCCceEEEeccCccHHH--HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 888 4678899999874332222211 10000 011233477888765444 333 8888884311
Q ss_pred eeee----cc--------CCCce-EEEEecCCCEEEEEe----EEEecCC-CeEEEEEcCCCc-----------------
Q 000177 1674 VHRF----DQ--------FTDHG-GGGFHPAGNEVIINS----EVWDLRK-FRLLRSVPSLDQ----------------- 1718 (1922)
Q Consensus 1674 I~kf----~g--------h~~~V-sVaFSPdG~~LASGS----eIWDLrT-gklL~tl~gH~~----------------- 1718 (1922)
...| ++ ....| .+.|+++|++|++-. +|||++. ..++++++-|..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 1111 11 12233 689999999999887 7999986 468889876654
Q ss_pred eeEEEccCCCEEEEEE
Q 000177 1719 TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs 1734 (1922)
-.+.||.+...+.+|+
T Consensus 341 FeisfSgd~~~v~sgs 356 (460)
T COG5170 341 FEISFSGDDKHVLSGS 356 (460)
T ss_pred EEEEecCCcccccccc
Confidence 3677888887777774
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.9e-05 Score=102.42 Aligned_cols=194 Identities=19% Similarity=0.279 Sum_probs=121.3
Q ss_pred EECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCC-----cceEec--c--ceeEEEcCCCC
Q 000177 1536 FDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGG-----PMHSFE--G--CKAARFSNSGN 1605 (1922)
Q Consensus 1536 WDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk-----~l~tf~--g--h~sVaFSPDG~ 1605 (1922)
|+. .|..+..+..|...|..++ .-++.+.+++|| +||+||+||.+...+. ...++. + ..++.+.+.++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a-~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLA-VSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhhhcccccccee-ecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 665 5778888889999999883 344555899995 5999999999863332 112222 1 36688888999
Q ss_pred EEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcceEEEEcCC-CC-eEeecc-----EEEEcCCCcceee
Q 000177 1606 LFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYSQIHFSPS-DT-MLLWNG-----ILWDRRNSVPVHR 1676 (1922)
Q Consensus 1606 ~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~vVaFSPd-G~-lLaSgg-----rLWDlrtgk~I~k 1676 (1922)
.++.+ +.||.|++.++...+. .........+....|.....-+|... +. .++.+. ..||+++...+.+
T Consensus 1112 ~~Av~---t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1112 QFAVS---TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred eEEEE---cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 99998 8999999999986221 11111111111111211111222222 22 333222 8999998776555
Q ss_pred ecc--CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC--CCc-eeEEEcc---CCCEEEEEE
Q 000177 1677 FDQ--FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS--LDQ-TTITFNA---RGDVIYAIL 1734 (1922)
Q Consensus 1677 f~g--h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g--H~~-~sVaFSP---dG~~LaSgs 1734 (1922)
++. ..+.+ +++.+|.+.++++|+ -+||+|=+.++..... +.. +.|..+| ...+++++.
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEec
Confidence 543 34455 999999999999999 3999997777776652 211 4555554 334555553
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.3e-06 Score=110.47 Aligned_cols=190 Identities=15% Similarity=0.276 Sum_probs=141.5
Q ss_pred cccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1488 RRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1488 r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
...+-|.+.+..++.+++--....|+.+.|+..|+.+..+..||.+.+|.+. .++..++++|+...+.. .|-. .+
T Consensus 2230 gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df--~Fi~--s~ 2304 (2439)
T KOG1064|consen 2230 GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF--RFIG--SL 2304 (2439)
T ss_pred ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce--eeee--hh
Confidence 3455666788888888875333789999999999999999999999999986 67778889999999988 5644 56
Q ss_pred EEE-e---cCCcEEEeccCCCCC-CcceE--eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc
Q 000177 1568 LLS-S---SSQDVHLWNASSIAG-GPMHS--FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1568 LaS-S---sDgtVkLWDl~t~~g-k~l~t--f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~ 1640 (1922)
+++ | .++.+.+||...... .++++ ..+.+++++.|..+.|++| +.+|.|++||++..+..++++
T Consensus 2305 ~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg---gr~G~v~l~D~rqrql~h~~~------ 2375 (2439)
T KOG1064|consen 2305 LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG---GRKGEVCLFDIRQRQLRHTFQ------ 2375 (2439)
T ss_pred hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec---CCcCcEEEeehHHHHHHHHhh------
Confidence 666 2 377899999865222 22332 2345899999999999999 999999999999988887775
Q ss_pred cCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--EEEe
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--EVWD 1703 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--eIWD 1703 (1922)
+++ ...++++++ +||++.....+++|......-+. |-..|..+-++- +||.
T Consensus 2376 ----------~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf-Fr~~g~Q~~v~~~nrifs 2433 (2439)
T KOG1064|consen 2376 ----------ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF-FRNIGMQINVGQCNRIFS 2433 (2439)
T ss_pred ----------hhh-hhheeeccCcccceEEEEccccchhhcCchhhcccch-hhhcCceeeeccCceEEE
Confidence 133 456777666 99999998888888654422233 666665544432 5554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00052 Score=82.29 Aligned_cols=220 Identities=14% Similarity=0.172 Sum_probs=141.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC--CCcee--eeccCCCCeeEEEeeecCCCcEEEEec--CCcE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNS--SSPLE--SCTSHQAPVTLVQSHLSGETQLLLSSS--SQDV 1576 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~t--gk~l~--tL~gHss~VtsLq~afSpDG~lLaSSs--DgtV 1576 (1922)
.+. +.++-++|+|++++|.++..+ |.|--|.++. |.... ....-..+-..| +++++|++|++.. -+.|
T Consensus 37 ~~~-~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv--svd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AEL-GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV--SVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred ccc-CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE--EECCCCCEEEEEEccCceE
Confidence 355 778999999999999998766 6777777764 44321 111112233667 7899999999863 7889
Q ss_pred EEeccCCCCCCcc---eEec------------c-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc
Q 000177 1577 HLWNASSIAGGPM---HSFE------------G-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1577 kLWDl~t~~gk~l---~tf~------------g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~ 1640 (1922)
.++-++.. +.+. ..+. . .++..|.|++++++++..+ . -.|.+|++..|+....-. ...
T Consensus 114 ~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~-Dri~~y~~~dg~L~~~~~--~~v- 187 (346)
T COG2706 114 SVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-T-DRIFLYDLDDGKLTPADP--AEV- 187 (346)
T ss_pred EEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-C-ceEEEEEcccCccccccc--ccc-
Confidence 99988652 3221 1111 1 2678899999999998442 3 458999999776543221 111
Q ss_pred cCCCCcceEEEEcCCCCeEeecc------EEEEcCCC--c--ceeee-------ccCCCceEEEEecCCCEEEEEeE---
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNS--V--PVHRF-------DQFTDHGGGGFHPAGNEVIINSE--- 1700 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtg--k--~I~kf-------~gh~~~VsVaFSPdG~~LASGSe--- 1700 (1922)
..|..-.-+.|+|++++..... .+|..... + .++++ .+....-.+..+|||++|..+.+
T Consensus 188 -~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 188 -KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred -CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 1233333499999999877544 78887763 2 22222 22223337899999999999884
Q ss_pred -EE--ecC--CCe--EEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1701 -VW--DLR--KFR--LLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1701 -IW--DLr--Tgk--lL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
|| .+. +++ .+...+.+.+ ....|+|.|++|+++..
T Consensus 267 sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 267 SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 43 332 233 2223333333 79999999999999843
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00022 Score=83.94 Aligned_cols=161 Identities=10% Similarity=0.190 Sum_probs=113.3
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCC-CC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNS-GN 1605 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPD-G~ 1605 (1922)
..|.|||=....++.++. ...+|.+| .+.++ .|+.--.+.|.||.+.+ .-+.++.+... --++..|. ++
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V--~l~r~--riVvvl~~~I~VytF~~-n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAV--KLRRD--RIVVVLENKIYVYTFPD-NPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeE--EEcCC--eEEEEecCeEEEEEcCC-ChhheeeeecccCCCceEeecCCCCc
Confidence 469999966666666664 46889999 66544 77777888999999974 14455555432 12445553 33
Q ss_pred EEEEeecCCCCCeEEEEECCCCcee--eeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeee
Q 000177 1606 LFAALPTETSDRGILLYDIQTYQLE--AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1606 ~LaSgS~~S~DgtIrIWDlrTgk~i--~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf 1677 (1922)
.+++. .+-.-|.|.|-|+..-+.- ..+. .|...+.+++.+.+|.+++|++ +|||..+|..+..|
T Consensus 149 ~~Laf-Pg~k~GqvQi~dL~~~~~~~p~~I~-------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 149 SLLAF-PGFKTGQVQIVDLASTKPNAPSIIN-------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred eEEEc-CCCccceEEEEEhhhcCcCCceEEE-------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 33332 3456699999999864431 2222 2344556699999999999998 99999999999999
Q ss_pred ccCCCc--e-EEEEecCCCEEEEEeE-----EEecC
Q 000177 1678 DQFTDH--G-GGGFHPAGNEVIINSE-----VWDLR 1705 (1922)
Q Consensus 1678 ~gh~~~--V-sVaFSPdG~~LASGSe-----IWDLr 1705 (1922)
....+. + +++||||+.+|+..|+ |+.++
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 765443 3 9999999999999993 66655
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=90.16 Aligned_cols=184 Identities=20% Similarity=0.309 Sum_probs=122.5
Q ss_pred CEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCC------------------------------------------ceee
Q 000177 1511 LLTCITFLGDSS--HIAVGSHTKELKIFDSNSSS------------------------------------------PLES 1546 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~--lLASGS~DGtIkIWDl~tgk------------------------------------------~l~t 1546 (1922)
.|..+.|..++. .++..+.|.+|++|.+.... +.+.
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 467788876543 67777899999999874220 0112
Q ss_pred e-ccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCc-ceEecc---------ceeEEEcCC-CCEEEEeecCC
Q 000177 1547 C-TSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP-MHSFEG---------CKAARFSNS-GNLFAALPTET 1614 (1922)
Q Consensus 1547 L-~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~-l~tf~g---------h~sVaFSPD-G~~LaSgS~~S 1614 (1922)
+ ..|..-|++| +|+.|...+++++|=.|.+|++....+.. +--++. +++..|||. ...|... +
T Consensus 167 yaNaH~yhiNSi--S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS---s 241 (460)
T COG5170 167 YANAHPYHINSI--SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS---S 241 (460)
T ss_pred ccccceeEeeee--eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe---c
Confidence 2 5678888999 88999999999999999999997632211 111111 378899995 4455554 6
Q ss_pred CCCeEEEEECCCCcee----eeec---cccccccCCC--CcceEEEEcCCCCeEeecc----EEEEcCCC-cceeeeccC
Q 000177 1615 SDRGILLYDIQTYQLE----AKLS---DTSVNLTGRG--HAYSQIHFSPSDTMLLWNG----ILWDRRNS-VPVHRFDQF 1680 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i----~tL~---d~s~~~~~~g--h~~~vVaFSPdG~lLaSgg----rLWDlrtg-k~I~kf~gh 1680 (1922)
..|.|++-|++..... ..+. ++.......+ ..+..+.|+++|+++++-. +|||++.. .|+.++.-|
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence 7799999999943221 1111 0100000001 1122399999999999888 99999975 478877544
Q ss_pred C------------Cce----EEEEecCCCEEEEEe
Q 000177 1681 T------------DHG----GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1681 ~------------~~V----sVaFSPdG~~LASGS 1699 (1922)
. ..| -+.|+-+.+.+++|+
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 2 233 578999999999998
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=90.59 Aligned_cols=133 Identities=14% Similarity=0.228 Sum_probs=108.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc--
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG-- 1594 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g-- 1594 (1922)
|...|+-|...|.|.+|++..|+....+ .+|.+.|+++ .++.+-..|.+ +.|..+.+|+... .+.++.+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~--~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~~~~~~ 144 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEI--LDAQRLGCIYSVGADLKVVYILEKE--KVIIRIWKEQK 144 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceee--ecccccCceEecCCceeEEEEeccc--ceeeeeeccCC
Confidence 4558899999999999999999988887 4799999999 66777777777 5699999999987 666777765
Q ss_pred --ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCC-----CCeEeecc--
Q 000177 1595 --CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPS-----DTMLLWNG-- 1663 (1922)
Q Consensus 1595 --h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPd-----G~lLaSgg-- 1663 (1922)
..+++.+|||..++++ + ++|++||+.+++.+.+|+ ||...+ +.|... |.+++++.
T Consensus 145 ~~~~sl~is~D~~~l~~a---s--~~ik~~~~~~kevv~~ft---------gh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTA---S--RQIKVLDIETKEVVITFT---------GHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred CccceEEEcCCCCEEEec---c--ceEEEEEccCceEEEEec---------CCCcceEEEEEEEeccccccceeeecccc
Confidence 3789999999999988 3 679999999999999997 565554 777766 78888665
Q ss_pred ----EEEEcCC
Q 000177 1664 ----ILWDRRN 1670 (1922)
Q Consensus 1664 ----rLWDlrt 1670 (1922)
.+|-+..
T Consensus 211 ~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERGITVWVVEK 221 (541)
T ss_pred ccceeEEEEEc
Confidence 5666553
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=65.59 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=36.3
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFD 1537 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWD 1537 (1922)
+++++|++|. +.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5688999999 9999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=93.65 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=92.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----CceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSS-----SPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg-----k~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
+.|.++.|...+++++.|...|.|..+|+..+ .+... --|.+.|++++. ..-++++|++| -+|+|+|||.+-
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~-Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQI-LQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhh-hccccceEeeccCcCceeEeeehh
Confidence 66889999999999999999999999999765 23333 348999999962 33256677665 599999999986
Q ss_pred CCCCc---ceEeccc-ee-----EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1584 IAGGP---MHSFEGC-KA-----ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1584 ~~gk~---l~tf~gh-~s-----VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.++ ++++.|| +. +..++....++++ +.|...+||.++.|..+.+++
T Consensus 331 --~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~---GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 331 --TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV---GDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred --hhcccceeeeecccccccccccccccccceEEEc---cCeeEEEEEecccCceeeccC
Confidence 555 8889997 22 3344556677777 899999999999999998886
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0017 Score=88.74 Aligned_cols=175 Identities=13% Similarity=0.147 Sum_probs=108.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------------C----------CCceeeecc----------------
Q 000177 1509 GALLTCITFLGDSSHIAVGSHTKELKIFDSN-------------S----------SSPLESCTS---------------- 1549 (1922)
Q Consensus 1509 d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~-------------t----------gk~l~tL~g---------------- 1549 (1922)
+++|.|++||||+..|+..+.+++|.+-+-+ - |+....|.|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4789999999999999999999998775321 0 111111211
Q ss_pred --------CCCCeeEEEeeecCCCcEEEEec----C---CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEe
Q 000177 1550 --------HQAPVTLVQSHLSGETQLLLSSS----S---QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1550 --------Hss~VtsLq~afSpDG~lLaSSs----D---gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSg 1610 (1922)
+...-..| +|-.||+|++.+. . ..++||+-+ |....+-+. ..+++|.|.|++|++.
T Consensus 200 ~~d~~~~s~dd~~~~I--SWRGDG~yFAVss~~~~~~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRI--SWRGDGEYFAVSSVEPETGSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred ccccCccccCCCceEE--EECCCCcEEEEEEEEcCCCceeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEE
Confidence 22233455 7899999999852 2 469999976 443222222 2679999999999998
Q ss_pred ecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCc----ceeeeccCCC
Q 000177 1611 PTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSV----PVHRFDQFTD 1682 (1922)
Q Consensus 1611 S~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk----~I~kf~gh~~ 1682 (1922)
........|.+|.- +|-.-..|.-+. ...+..+..+.|++++..|+..- .+|-..+.. ..-.|.....
T Consensus 275 q~~~~~~~VvFfEr-NGLrhgeF~l~~---~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~ 350 (928)
T PF04762_consen 275 QRLPDRHDVVFFER-NGLRHGEFTLRF---DPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSES 350 (928)
T ss_pred EEcCCCcEEEEEec-CCcEeeeEecCC---CCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCC
Confidence 54334455666653 344433343110 01233445599999999998543 899877653 1122322223
Q ss_pred ceEEEEecCC
Q 000177 1683 HGGGGFHPAG 1692 (1922)
Q Consensus 1683 ~VsVaFSPdG 1692 (1922)
...+.|||..
T Consensus 351 ~~~~~Wdpe~ 360 (928)
T PF04762_consen 351 VNFVKWDPEK 360 (928)
T ss_pred CCceEECCCC
Confidence 3368999854
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.001 Score=81.37 Aligned_cols=277 Identities=11% Similarity=0.088 Sum_probs=162.6
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTK-ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DG-tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t 1583 (1922)
+|. +.|.-..+..+++-++.|..|| .+-|||..+++. +.+...-+.|..+ ..+++|++++.+. ...+.+.|+.+
T Consensus 357 ~~~-~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av--~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKK-GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAV--KVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCC-CceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEE--EEcCCCcEEEEEcCceEEEEEEecC
Confidence 677 7899999999999999999999 899999987764 4555566789999 8899999888876 55799999988
Q ss_pred CCCCcceE----eccceeEEEcCCCCEEEEeecCC-CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1584 IAGGPMHS----FEGCKAARFSNSGNLFAALPTET-SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1584 ~~gk~l~t----f~gh~sVaFSPDG~~LaSgS~~S-~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
+.+... ..-++...|||++++|+.+-.++ .-..|++||+.+++....-+ .......-+|.|++++
T Consensus 433 --gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--------~ta~DfsPaFD~d~ry 502 (668)
T COG4946 433 --GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--------PTAYDFSPAFDPDGRY 502 (668)
T ss_pred --CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--------CcccccCcccCCCCcE
Confidence 443211 11258899999999999873221 23569999999888765443 1122233789999998
Q ss_pred Eeecc-EEEEcCCCcceeee--ccCCCceEE-----EEecCCCEEEEEe---EEEecCCC-eEEEEEcCCCc--eeEEEc
Q 000177 1659 LLWNG-ILWDRRNSVPVHRF--DQFTDHGGG-----GFHPAGNEVIINS---EVWDLRKF-RLLRSVPSLDQ--TTITFN 1724 (1922)
Q Consensus 1659 LaSgg-rLWDlrtgk~I~kf--~gh~~~VsV-----aFSPdG~~LASGS---eIWDLrTg-klL~tl~gH~~--~sVaFS 1724 (1922)
|.--+ +-.|..+.+.+..| ..+..+.-+ ..||-.+..=... .-+|++.- ..+.-++-... .+++=-
T Consensus 503 LYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~l 582 (668)
T COG4946 503 LYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGL 582 (668)
T ss_pred EEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeec
Confidence 87555 44444444433322 333332211 1222221111000 12333211 11111221111 344444
Q ss_pred cCCCEEEEEEccCc--hhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCcc
Q 000177 1725 ARGDVIYAILRRNL--EDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMF 1802 (1922)
Q Consensus 1725 PdG~~LaSgs~~d~--~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~d 1802 (1922)
.+|+++.-...-.+ ..+.| ....+..+...+.+.-.....+.++.++..|++++++-+.. +
T Consensus 583 k~~killfs~pi~Gefs~yy~----------gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilvk~-------d 645 (668)
T COG4946 583 KNGKILLFSYPIHGEFSQYYW----------GQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILVKL-------D 645 (668)
T ss_pred CCCeEEEEEeeccchhhhhhc----------CCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEEEe-------C
Confidence 45544443322111 11111 01122223333333333344567899999999999988752 3
Q ss_pred ceEEEEEecCC
Q 000177 1803 SSARIYEIGRR 1813 (1922)
Q Consensus 1803 SsVRLyEVGr~ 1813 (1922)
..++++++.++
T Consensus 646 ~kl~~f~vekk 656 (668)
T COG4946 646 GKLRLFDVEKK 656 (668)
T ss_pred CeEEEEecccC
Confidence 56888887654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.6e-05 Score=97.82 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=103.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcce-Ee
Q 000177 1515 ITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMH-SF 1592 (1922)
Q Consensus 1515 LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~-tf 1592 (1922)
+-++++.-++++|+.-+.|.+|+....+.-..+.||.+.|.++ .|+.||+++++ |.|.++++|++.+ .+... +.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i--~~s~dg~~i~s~SdDRsiRlW~i~s--~~~~~~~~ 214 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSI--VTSLDGRYIASVSDDRSIRLWPIDS--REVLGCTG 214 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEE--EEccCCcEEEEEecCcceeeeeccc--ccccCccc
Confidence 3456667799999999999999987433333689999999999 88999999999 6799999999998 43332 22
Q ss_pred ccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1593 EGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1593 ~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
=+| +.+.|+|+ +++++ +.|.+.++|+... ..+..+. ...+..++.+...+....++|++
T Consensus 215 fgHsaRvw~~~~~~n--~i~t~---gedctcrvW~~~~-~~l~~y~------~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN--RIITV---GEDCTCRVWGVNG-TQLEVYD------EHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ccccceeEEEEeccc--eeEEe---ccceEEEEEeccc-ceehhhh------hhhhcceeEEEEcCCceEEEeeccCcch
Confidence 233 77889988 88998 8999999997653 3333443 11233345588888888888777
Q ss_pred EEEEcC
Q 000177 1664 ILWDRR 1669 (1922)
Q Consensus 1664 rLWDlr 1669 (1922)
++||+.
T Consensus 283 k~~~l~ 288 (967)
T KOG0974|consen 283 KLWDLN 288 (967)
T ss_pred hhhhhh
Confidence 777765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0011 Score=80.86 Aligned_cols=205 Identities=12% Similarity=0.121 Sum_probs=131.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc------CC-----CCeeEEEeeecC-CCcEEEEecCCcEEEecc
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS------HQ-----APVTLVQSHLSG-ETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g------Hs-----s~VtsLq~afSp-DG~lLaSSsDgtVkLWDl 1581 (1922)
+=..+.||+.|+- +.-|.|.+||..+.+...--.+ .. .++.-+. .|++ +|.+++.-+-|...|.+.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle-dfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE-DFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhh-hhccCCCcEEEEEecCcEEEECC
Confidence 3344568887654 4568899999876554321111 01 1111111 1222 678888878888877776
Q ss_pred CCCCCCcc--eEeccceeEEEcCCCCEEEEeecCCCCC-eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1582 SSIAGGPM--HSFEGCKAARFSNSGNLFAALPTETSDR-GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1582 ~t~~gk~l--~tf~gh~sVaFSPDG~~LaSgS~~S~Dg-tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
.. +-.+ ..-.+++...+.-+++-++.| ..|| .+-|||.++++...... .-..+..+..+|+|+.
T Consensus 349 ~~--~~~iqv~~~~~VrY~r~~~~~e~~vig---t~dgD~l~iyd~~~~e~kr~e~--------~lg~I~av~vs~dGK~ 415 (668)
T COG4946 349 WD--GYSIQVGKKGGVRYRRIQVDPEGDVIG---TNDGDKLGIYDKDGGEVKRIEK--------DLGNIEAVKVSPDGKK 415 (668)
T ss_pred CC--CeeEEcCCCCceEEEEEccCCcceEEe---ccCCceEEEEecCCceEEEeeC--------CccceEEEEEcCCCcE
Confidence 54 2222 222246777777777778887 6777 89999999887655433 0122344999999997
Q ss_pred Eeecc-----EEEEcCCCcceeeeccC-CCce-EEEEecCCCEEEEEe---------EEEecCCCeEEEEEcCCC-ceeE
Q 000177 1659 LLWNG-----ILWDRRNSVPVHRFDQF-TDHG-GGGFHPAGNEVIINS---------EVWDLRKFRLLRSVPSLD-QTTI 1721 (1922)
Q Consensus 1659 LaSgg-----rLWDlrtgk~I~kf~gh-~~~V-sVaFSPdG~~LASGS---------eIWDLrTgklL~tl~gH~-~~sV 1721 (1922)
++.+. .+.|+.+|++. .++.. .+-| ...|||+++++|-+- +++|+.+++....-.... ..+-
T Consensus 416 ~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP 494 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP 494 (668)
T ss_pred EEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc
Confidence 77665 56677888653 33333 3334 899999999999876 599999887665433221 2688
Q ss_pred EEccCCCEEEEEE
Q 000177 1722 TFNARGDVIYAIL 1734 (1922)
Q Consensus 1722 aFSPdG~~LaSgs 1734 (1922)
+|.|+|++|+--+
T Consensus 495 aFD~d~ryLYfLs 507 (668)
T COG4946 495 AFDPDGRYLYFLS 507 (668)
T ss_pred ccCCCCcEEEEEe
Confidence 9999999999654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.004 Score=86.56 Aligned_cols=210 Identities=13% Similarity=0.138 Sum_probs=125.4
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeecc--C------------CCCeeEEEeeecCCCcEEEEe--cCCcE
Q 000177 1514 CITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTS--H------------QAPVTLVQSHLSGETQLLLSS--SSQDV 1576 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~g--H------------ss~VtsLq~afSpDG~lLaSS--sDgtV 1576 (1922)
.+++++ ++.+.++-+..+.|++||.. ++.+..+.+ . -..-..| ++++++..|..+ ..+.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GI--avd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGL--AYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEE--EEeCCCCEEEEEeCCCceE
Confidence 567776 45677777788889999974 444443322 1 1123667 778877754443 46789
Q ss_pred EEeccCCCCCCcceEe---------------------ccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1577 HLWNASSIAGGPMHSF---------------------EGCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf---------------------~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
+++|+.+ + .+.++ ..-+.++|+| ++..+++. ..++.|++||..++... .+.
T Consensus 649 r~id~~~--~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad---~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 649 REIDFVN--E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM---AGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred EEEecCC--C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE---CCCCeEEEEECCCCeEE-EEe
Confidence 9999865 2 23322 1226799999 45566665 67889999999877543 221
Q ss_pred -cccc-cccCC-----C-CcceEEEEcCCCC-eEeecc-----EEEEcCCCccee-------------eec---c-----
Q 000177 1635 -DTSV-NLTGR-----G-HAYSQIHFSPSDT-MLLWNG-----ILWDRRNSVPVH-------------RFD---Q----- 1679 (1922)
Q Consensus 1635 -d~s~-~~~~~-----g-h~~~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~-------------kf~---g----- 1679 (1922)
+... ...+. . ....-++|+|+|+ ++++.. ++||+.++.... .|- +
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 0000 00000 0 1112289999998 444444 889988764211 110 0
Q ss_pred -CCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEc-C---C-----------CceeEEEccCCCEEEEE
Q 000177 1680 -FTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP-S---L-----------DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1680 -h~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~-g---H-----------~~~sVaFSPdG~~LaSg 1733 (1922)
...+.+++|+++|+.+++.+ ++||..++.+..... + . ....|+++++|+++++-
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 11233789999998777665 589998776553321 1 0 11689999999865554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=91.62 Aligned_cols=189 Identities=11% Similarity=0.110 Sum_probs=119.3
Q ss_pred EEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceeeecc--C---------------CCCeeEEEeeecC-CCcEEEE-e
Q 000177 1512 LTCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLESCTS--H---------------QAPVTLVQSHLSG-ETQLLLS-S 1571 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~tL~g--H---------------ss~VtsLq~afSp-DG~lLaS-S 1571 (1922)
...++|+++++.|+++. ..+.|+++|+.++. +.++.+ . -..-+.| +++| ++.++++ +
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV--a~dp~~g~LyVad~ 702 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV--CFEPVNEKVYIAMA 702 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEE--EEecCCCeEEEEEC
Confidence 46899999888666655 45789999987654 333321 0 0122467 7888 5666666 4
Q ss_pred cCCcEEEeccCCCCCCcceE-------------------eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1572 SSQDVHLWNASSIAGGPMHS-------------------FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~t-------------------f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
.++.|++||..+ +. +.. +...+.++|+|++++|+.+ ++.++.|++||+.++.....
T Consensus 703 ~~~~I~v~d~~~--g~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVA--Ds~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 703 GQHQIWEYNISD--GV-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIA--DSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCCeEEEEECCC--Ce-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEE--ECCCCeEEEEECCCCcEEEE
Confidence 588999999865 22 111 1223569999999866555 36779999999987653211
Q ss_pred ec-cc----cccccC----------CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-c------------
Q 000177 1633 LS-DT----SVNLTG----------RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-Q------------ 1679 (1922)
Q Consensus 1633 L~-d~----s~~~~~----------~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-g------------ 1679 (1922)
.. ++ .....+ ..++ ..++|+++|.++++.. ++||..++....... +
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a 856 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA 856 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence 10 00 000000 0111 2389999999888765 899988775442221 0
Q ss_pred -CCCceEEEEecCCCEEEEEe-----EEEecCCCeE
Q 000177 1680 -FTDHGGGGFHPAGNEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1680 -h~~~VsVaFSPdG~~LASGS-----eIWDLrTgkl 1709 (1922)
...+..++++++|+.+++.+ ++||+.+++.
T Consensus 857 ~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 857 QLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11233789999999777766 5999998765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=90.08 Aligned_cols=222 Identities=11% Similarity=0.097 Sum_probs=140.5
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
...-++|.||. +.|.-+.|+.+.+.|-|...+|.|.||-+-+|.....+ .-..+-|.++ +|+.||+.|+.- .||
T Consensus 61 LsmNQtLeGH~-~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm--sWn~dG~kIcIvYeDG 137 (1189)
T KOG2041|consen 61 LSMNQTLEGHN-ASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM--SWNLDGTKICIVYEDG 137 (1189)
T ss_pred cchhhhhccCc-ceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEE--EEcCCCcEEEEEEccC
Confidence 34457899999 99999999999999999999999999999888765544 3345678888 788898877664 588
Q ss_pred cEEEeccCCCCCCcc--eEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-------ceeeeeccccccccCC
Q 000177 1575 DVHLWNASSIAGGPM--HSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQTY-------QLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l--~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-------k~i~tL~d~s~~~~~~ 1643 (1922)
.|.+=.+.. ..+ ..+++. ..+.|++|.+.++.+ -..|.+++||.+.. .+..+.+.. ....
T Consensus 138 avIVGsvdG---NRIwgKeLkg~~l~hv~ws~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~---~s~~ 208 (1189)
T KOG2041|consen 138 AVIVGSVDG---NRIWGKELKGQLLAHVLWSEDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGI---FSNF 208 (1189)
T ss_pred CEEEEeecc---ceecchhcchheccceeecccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeee---ecCC
Confidence 776655542 222 123332 568999999888877 67789999998632 121111111 1112
Q ss_pred CCcceEEEEc--------CCCCeEeecc---E--EE-EcCCCcceeeeccCCCceEEEEecCCCEEEEEeE---------
Q 000177 1644 GHAYSQIHFS--------PSDTMLLWNG---I--LW-DRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE--------- 1700 (1922)
Q Consensus 1644 gh~~~vVaFS--------PdG~lLaSgg---r--LW-Dlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe--------- 1700 (1922)
+|....+.|. |+...++.+- + |- ......|+ .++.....+...|+|+|..|++++.
T Consensus 209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d 287 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTD 287 (1189)
T ss_pred CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEecccEeecceecCCCcEEEEccCcccccCccc
Confidence 3444444443 4555555432 1 11 11122232 2333333447899999999999981
Q ss_pred -----EEecCCCeEEEEEc--CCCceeEEEccCCCEEEEE
Q 000177 1701 -----VWDLRKFRLLRSVP--SLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1701 -----IWDLrTgklL~tl~--gH~~~sVaFSPdG~~LaSg 1733 (1922)
++.. -|+.+.+++ +...+.++|-..|-.|+.+
T Consensus 288 ~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 288 SNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 2221 256666665 3333788888777665543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.5e-05 Score=94.75 Aligned_cols=169 Identities=18% Similarity=0.264 Sum_probs=118.1
Q ss_pred EEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC-ceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEe
Q 000177 1502 RTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSS-PLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLW 1579 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk-~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLW 1579 (1922)
..+.||. ..|+.+.|+| ....|++++.|..|..||+.+.. ++..+......-..|+|.+ .++..++++..+.|.+|
T Consensus 108 f~lhghs-raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny-k~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 108 FVLHGHS-RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY-KDPNVLASSHGNDIFVW 185 (1081)
T ss_pred EEEecCc-cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc-cCcchhhhccCCceEEE
Confidence 3567899 9999999998 45589999999999999998653 5566655566677885533 36677777878889999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcceEEEE
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
|.+.+ +.++.++++| +.++|..- -..+.++ +.|++|+.||-..... ..+++ ....++...|
T Consensus 186 d~r~g-s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~---~~d~tvkfw~y~kSt~e~~~~vt--------t~~piw~~r~ 253 (1081)
T KOG0309|consen 186 DLRKG-STPLCSLKGHVSSVNSIDFNRFKYSEIMSS---SNDGTVKFWDYSKSTTESKRTVT--------TNFPIWRGRY 253 (1081)
T ss_pred eccCC-CcceEEecccceeeehHHHhhhhhhhhccc---CCCCceeeecccccccccceecc--------ccCcceeccc
Confidence 99873 6788888886 44556542 2346666 8899999999874332 22222 2344444555
Q ss_pred cCCCCeEe----ecc------------EEEEcCCC-cceeeeccCCCce
Q 000177 1653 SPSDTMLL----WNG------------ILWDRRNS-VPVHRFDQFTDHG 1684 (1922)
Q Consensus 1653 SPdG~lLa----Sgg------------rLWDlrtg-k~I~kf~gh~~~V 1684 (1922)
.|-|+-.. .|+ ..|++.++ ++|++|.||.+.|
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 55443211 111 67777765 6899999999866
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0089 Score=69.38 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=121.5
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeec-CCCcEEEEecCCcEEEeccCCCCCCcceE
Q 000177 1514 CITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLS-GETQLLLSSSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afS-pDG~lLaSSsDgtVkLWDl~t~~gk~l~t 1591 (1922)
+..|.+ ++.++++--..+.|..|+..+++... +.... ...+ .+. +++.++++...+ +.++|..+..-+.+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~--~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGM--AFDRPDGRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEE--EEECTTSEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceE--EEEccCCEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 577888 77777887789999999998775533 32222 5555 455 777777776544 4555887621122233
Q ss_pred ec-------cceeEEEcCCCCEEEEeecCCC---C--CeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1592 FE-------GCKAARFSNSGNLFAALPTETS---D--RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1592 f~-------gh~sVaFSPDG~~LaSgS~~S~---D--gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
.. ..+.+++.|+|+++++...... . +.|..++.. ++...... .-+..+-++|+|+++.|
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--------~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--------GLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--------EESSEEEEEEETTSSEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--------CcccccceEECCcchhe
Confidence 21 1378999999997777632211 1 557777777 45433332 11233459999999876
Q ss_pred e-ecc---EEE--EcCC-Cc-c--eeee---ccCCCce-EEEEecCCCEEEEEe---E--EEecCCCeEEEEEcCC--Cc
Q 000177 1660 L-WNG---ILW--DRRN-SV-P--VHRF---DQFTDHG-GGGFHPAGNEVIINS---E--VWDLRKFRLLRSVPSL--DQ 1718 (1922)
Q Consensus 1660 a-Sgg---rLW--Dlrt-gk-~--I~kf---~gh~~~V-sVaFSPdG~~LASGS---e--IWDLrTgklL~tl~gH--~~ 1718 (1922)
+ +.+ +|| ++.. +. . ...| ....... .+++..+|+..++.. + ++|.. |+++..+.-. ..
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~ 227 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP 227 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE
Confidence 5 444 444 4432 22 1 1223 2222223 899999998776633 3 56665 8888877643 23
Q ss_pred eeEEE-ccCCCEEEEE
Q 000177 1719 TTITF-NARGDVIYAI 1733 (1922)
Q Consensus 1719 ~sVaF-SPdG~~LaSg 1733 (1922)
++++| .++.+.|+..
T Consensus 228 t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEESTTSSEEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 89999 4777777765
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=84.79 Aligned_cols=125 Identities=13% Similarity=0.164 Sum_probs=93.1
Q ss_pred CceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCCceee-eccCCCCeeEEEeeecCCCcEEEEec-
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSN-SSSPLES-CTSHQAPVTLVQSHLSGETQLLLSSS- 1572 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~-tgk~l~t-L~gHss~VtsLq~afSpDG~lLaSSs- 1572 (1922)
.....++.++|. -+.|.++|+. +.+++++|+.|+.+.-||+. .++.+.. .+-|+..|.+|. +-.|.+.+|+||+
T Consensus 154 ~le~vq~wk~He-~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~-ss~~~~~~I~TGsY 231 (339)
T KOG0280|consen 154 VLEKVQTWKVHE-FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY-SSPPKPTYIATGSY 231 (339)
T ss_pred eeeecccccccc-eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe-cCCCCCceEEEecc
Confidence 345566788999 9999999997 56799999999999999998 4455444 467999999995 3445688999976
Q ss_pred CCcEEEeccCCCCCCcceEe---ccceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1573 SQDVHLWNASSIAGGPMHSF---EGCKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf---~gh~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
|-.|++||.+.. ++++..- -|++.+.++|. ++.++++ ..+-.+|-++..+.
T Consensus 232 De~i~~~DtRnm-~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C----Mh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 232 DECIRVLDTRNM-GKPLFKAKVGGGVWRIKHHPEIFHRLLAAC----MHNGAKILDSSDKV 287 (339)
T ss_pred ccceeeeehhcc-cCccccCccccceEEEEecchhhhHHHHHH----HhcCceEEEecccc
Confidence 999999999963 6666433 35799999994 3444544 22336777776543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0053 Score=75.53 Aligned_cols=255 Identities=13% Similarity=0.156 Sum_probs=140.5
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCc
Q 000177 1518 LGDSSHIAVG---------SHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1518 SPDG~lLASG---------S~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~ 1588 (1922)
|||+++++.. +..+.+.|||+.+++....... ...+... .|||+|+.++...++.|.+++..+ +..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~--~~sP~g~~~~~v~~~nly~~~~~~--~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDA--KWSPDGKYIAFVRDNNLYLRDLAT--GQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEE--EE-SSSTEEEEEETTEEEEESSTT--SEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccc--eeecCCCeeEEEecCceEEEECCC--CCe
Confidence 5778777663 2346789999988765443333 5567777 789999999999999999999865 221
Q ss_pred c-eEecc--------------------ceeEEEcCCCCEEEEeecCC-------------------------------CC
Q 000177 1589 M-HSFEG--------------------CKAARFSNSGNLFAALPTET-------------------------------SD 1616 (1922)
Q Consensus 1589 l-~tf~g--------------------h~sVaFSPDG~~LaSgS~~S-------------------------------~D 1616 (1922)
. .+..| ...+-|||||++|+....+. ..
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 1 11111 25688999999998763321 00
Q ss_pred C--eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eEeec-c--------EEEEcCCCcceeee-ccCCCc
Q 000177 1617 R--GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWN-G--------ILWDRRNSVPVHRF-DQFTDH 1683 (1922)
Q Consensus 1617 g--tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSg-g--------rLWDlrtgk~I~kf-~gh~~~ 1683 (1922)
- .+.|+|+.+++... +..+. ......+-...+.|.++++ +++.- . .++|..++++-..+ .....+
T Consensus 156 p~v~l~v~~~~~~~~~~-~~~~~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTE-LDPPN-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp -EEEEEEEESSSTCCCE-E---H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred CceEEEEEECCCCcEEE-eeecc-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 1 23344554444321 11000 0001233344499999998 43321 1 67888877643222 223334
Q ss_pred e----EEEEe-cCCCEEEEEeE--------EEecCCCeEEEEEc-CCCc--eeEEEccCCCEEEEEEccCchhhhhhhcc
Q 000177 1684 G----GGGFH-PAGNEVIINSE--------VWDLRKFRLLRSVP-SLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1684 V----sVaFS-PdG~~LASGSe--------IWDLrTgklL~tl~-gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~ 1747 (1922)
+ ...|. +++..++-.++ +.+..++. .+.+. |.-. .-+.|++++..|+-.....
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~---------- 302 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGD---------- 302 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSG----------
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCC----------
Confidence 3 56665 88877776662 44554444 33333 2211 3578899888777543221
Q ss_pred cccccCCcceEEEEecCCCceeeeeccCCce-EEEEEcCCCceEEEEe
Q 000177 1748 RRVKHPLFAAFRTVDAINYSDIATIPVDRCV-LDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1748 rr~ksp~~ssFrt~Da~dys~IaTidvkr~I-~dLa~SPdds~LAVVe 1794 (1922)
.|....+..++......+..+...... ..+.+||++++++...
T Consensus 303 ----~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 303 ----NPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp ----GTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ----CCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 234455555555422233333333333 5999999999988654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.012 Score=80.89 Aligned_cols=269 Identities=15% Similarity=0.189 Sum_probs=144.5
Q ss_pred CCEEEEEEcCCCCE--EEEEeCCC--cEEEEECCCCC---ceeeec-----cCCCCeeEEEeeecCCCc-EEEEecCCcE
Q 000177 1510 ALLTCITFLGDSSH--IAVGSHTK--ELKIFDSNSSS---PLESCT-----SHQAPVTLVQSHLSGETQ-LLLSSSSQDV 1576 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~l--LASGS~DG--tIkIWDl~tgk---~l~tL~-----gHss~VtsLq~afSpDG~-lLaSSsDgtV 1576 (1922)
..+...+|.+.... ++++.... .|.+....... .+..+. .....|.++ .|-++.. +++...+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~--~yl~d~~~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSF--QYLADSESLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEE--EeccCCCcEEEEECCceE
Confidence 35677777775543 34443333 33444333222 233332 234678888 5555554 5555679999
Q ss_pred EEe----ccCCCCCCcceEec-cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE-E
Q 000177 1577 HLW----NASSIAGGPMHSFE-GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ-I 1650 (1922)
Q Consensus 1577 kLW----Dl~t~~gk~l~tf~-gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v-V 1650 (1922)
.+. +......+.+..+. |+.+++||||+..++.. +.++++.+.+ ++...+...+ +.....+....+ +
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~v---T~~~~l~~mt-~~fd~i~E~~---l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALV---TGEGNLLLMT-RDFDPISEVP---LDSDDFGESKHVSV 172 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEE---eCCCEEEEEe-ccceEEEEee---cCccccCCCceeee
Confidence 988 66543234455554 57999999999999888 6677777664 4444444332 111111111111 3
Q ss_pred EEcCCCCeEe-eccE-----EEEcCCC-cceeeeccCCCceEEEEecCCCEEEEEe-----------EEEecCCCeEEEE
Q 000177 1651 HFSPSDTMLL-WNGI-----LWDRRNS-VPVHRFDQFTDHGGGGFHPAGNEVIINS-----------EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1651 aFSPdG~lLa-Sggr-----LWDlrtg-k~I~kf~gh~~~VsVaFSPdG~~LASGS-----------eIWDLrTgklL~t 1712 (1922)
-|-.....+= +.|+ +=|.... .....+....+.+.++|-.||.|+|+++ +||+-. |.+..+
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st 251 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST 251 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec
Confidence 3332221111 1111 1111111 0011122122445899999999999988 388865 665544
Q ss_pred EcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce-eeee---ccCCceEEEEEcCC
Q 000177 1713 VPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD-IATI---PVDRCVLDFATERT 1786 (1922)
Q Consensus 1713 l~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~-IaTi---dvkr~I~dLa~SPd 1786 (1922)
-..-+. .+++|-|.|.+|++..+... ...+.+|+...... -.++ .....|..+.|+++
T Consensus 252 SE~v~gLe~~l~WrPsG~lIA~~q~~~~----------------~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 252 SEPVDGLEGALSWRPSGNLIASSQRLPD----------------RHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred cccCCCccCCccCCCCCCEEEEEEEcCC----------------CcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCC
Confidence 432222 59999999999999843111 11222232211110 0111 12346899999999
Q ss_pred CceEEEEecCCCCCccceEEEEEec
Q 000177 1787 DSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1787 ds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+..+|+.-.+ .+.+|-.+
T Consensus 316 s~iLAv~~~~-------~vqLWt~~ 333 (928)
T PF04762_consen 316 SEILAVWLED-------RVQLWTRS 333 (928)
T ss_pred CCEEEEEecC-------CceEEEee
Confidence 9999997522 27777654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0044 Score=71.98 Aligned_cols=204 Identities=16% Similarity=0.117 Sum_probs=127.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc--ce
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG--CK 1596 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g--h~ 1596 (1922)
.-.+|+.|+.-|...+|.+.+.+. ++....|...|+-+.-.-...-.+++++.|.+++++++.-...+....+.. .+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345899999999999999987654 344466666665442111112356777889999999887522222222222 57
Q ss_pred eEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC
Q 000177 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN 1670 (1922)
Q Consensus 1597 sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt 1670 (1922)
++.++++++++++. +.-..|..|.+.... .+..+. .. ..........|+..+..++++. .|||+|.
T Consensus 163 s~~~snd~~~~~~V---gds~~Vf~y~id~~sey~~~~~---~a--~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSV---GDSRRVFRYAIDDESEYIENIY---EA--PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeEEcCCCceEEEe---cCCCcceEEEeCCccceeeeeE---ec--ccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 89999999999998 666788889886432 222211 00 0123345588999998888766 8999996
Q ss_pred Ccceeee-----ccCCCce-EEEEecCCC---EEEEEe----EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEE
Q 000177 1671 SVPVHRF-----DQFTDHG-GGGFHPAGN---EVIINS----EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1671 gk~I~kf-----~gh~~~V-sVaFSPdG~---~LASGS----eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
-...+.+ ..|++.+ .+.|+|-|. .+++-. .+-|+|+++-.+.+.-.+ .+-++|..+.|+.+
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIFGT 308 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc--cccccccccccccc
Confidence 5422222 3466777 889998664 223322 488999887655543222 23455555544443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=88.29 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=70.6
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEecc
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNA 1581 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl 1581 (1922)
+-||- +.++.++|+||+++|+|+..|..|+|-....-..+.+| -||+..|..+ +..++ +.|++ |.|++|++||+
T Consensus 147 ~lGhv-Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i--sl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 147 ILGHV-SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI--SLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhh-hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeee--eeccC-ceeeecCCCCcEEEEec
Confidence 34899 99999999999999999999999999888766666666 7899999999 55544 45555 67999999999
Q ss_pred CCCCCCcceEec
Q 000177 1582 SSIAGGPMHSFE 1593 (1922)
Q Consensus 1582 ~t~~gk~l~tf~ 1593 (1922)
.+ +++++++.
T Consensus 223 ~s--gk~L~t~d 232 (390)
T KOG3914|consen 223 TS--GKLLDTCD 232 (390)
T ss_pred cc--CCcccccc
Confidence 98 88877664
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0021 Score=77.82 Aligned_cols=247 Identities=12% Similarity=0.104 Sum_probs=138.8
Q ss_pred EEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEE-ecCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEE
Q 000177 1533 LKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLS-SSSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLF 1607 (1922)
Q Consensus 1533 IkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~L 1607 (1922)
|++.+..+.+....+.+|...|..+ +|||..+ ++.. +-+.+|+|.|+++ ..++.++.. .|+++|.-+...+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet--~~~vssy~a~~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLET--SCVVSSYIAYNQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhh--ccCccccceeeeeccCceEEEEeccc--ceeeeheeccCCceeeeeccCCcce
Confidence 6777766667667678899999999 8898877 4444 5599999999998 555555544 4999999976554
Q ss_pred EEeecCCCCCeEEEEECCCCce-eeeecc-ccccccCCCCcceEEEEcCCCCeEeecc---EEEEcCCC--cceeeeccC
Q 000177 1608 AALPTETSDRGILLYDIQTYQL-EAKLSD-TSVNLTGRGHAYSQIHFSPSDTMLLWNG---ILWDRRNS--VPVHRFDQF 1680 (1922)
Q Consensus 1608 aSgS~~S~DgtIrIWDlrTgk~-i~tL~d-~s~~~~~~gh~~~vVaFSPdG~lLaSgg---rLWDlrtg--k~I~kf~gh 1680 (1922)
+.++ -..|.|.|||++...- +..+.. ...+...+-|...--...+.|.+++... ..|.+... .+.....-.
T Consensus 251 IYaG--l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 251 IYAG--LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred eEEe--ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccC
Confidence 4441 6789999999986432 111110 0000000000000012334455555333 67776532 223333222
Q ss_pred CC--ceEEEEecCCCEEEEEeE-------------EEecCCCeEEEEE-cCC---C------ceeEEEccCCCEEEEEEc
Q 000177 1681 TD--HGGGGFHPAGNEVIINSE-------------VWDLRKFRLLRSV-PSL---D------QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1681 ~~--~VsVaFSPdG~~LASGSe-------------IWDLrTgklL~tl-~gH---~------~~sVaFSPdG~~LaSgs~ 1735 (1922)
.. .++..+++-.+.++..-+ --|.++|..+-.. +++ . ...+.-.++.++|+....
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD 408 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence 22 235666665555544431 0122223222111 111 1 123333455555555421
Q ss_pred cCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC--CCceEEEEecCCCCCccceEEEEEe
Q 000177 1736 RNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER--TDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1736 ~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP--dds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
-...+..+|...+..+.+...+.+|.|++... .+.++++.. +..|+||.+
T Consensus 409 ------------------~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-------d~~v~Iyk~ 460 (463)
T KOG1645|consen 409 ------------------STNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-------DDRVHIYKN 460 (463)
T ss_pred ------------------CcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-------cceEEEEec
Confidence 12356778888888888888899999998754 244777652 345777764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00016 Score=88.41 Aligned_cols=161 Identities=18% Similarity=0.227 Sum_probs=109.8
Q ss_pred eeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC-----CCcceEeccc----eeEEEcCCCCEEEEeecCC
Q 000177 1544 LESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA-----GGPMHSFEGC----KAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1544 l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~-----gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S 1614 (1922)
+..|.||+..|..+. +.+..+.++..+.|++|++|.++... ..|.++++.| +.+.|-.+-++++++
T Consensus 728 L~nf~GH~~~iRai~-AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc---- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIA-AIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC---- 802 (1034)
T ss_pred eecccCcHHHhHHHH-hcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec----
Confidence 456789999999884 56667778777999999999997621 1244556555 678888888888876
Q ss_pred CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC-CCCeEeecc------EEEEcCCCcceeeecc-----CCC
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWNG------ILWDRRNSVPVHRFDQ-----FTD 1682 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSgg------rLWDlrtgk~I~kf~g-----h~~ 1682 (1922)
|+.|++||.--+..+..+.+.. .++...++.+.-. +..+++.+. +++|.|.+.-+..++. .+.
T Consensus 803 -D~giHlWDPFigr~Laq~~dap----k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAP----KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA 877 (1034)
T ss_pred -cCcceeecccccchhHhhhcCc----ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence 6779999988777766544211 1223333333333 333444332 9999998875555532 333
Q ss_pred ce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1683 HG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1683 ~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
.+ +++..|.|++++.+- -+.|.++|+.+..+.
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 34 889999999988764 388999998877554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0048 Score=71.67 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=108.0
Q ss_pred EEEEEeCCCcEEEEECCCCCceeeeccCCCC--eeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc-----
Q 000177 1523 HIAVGSHTKELKIFDSNSSSPLESCTSHQAP--VTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG----- 1594 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~tgk~l~tL~gHss~--VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g----- 1594 (1922)
-+..++.|.++++.++.-+..... -|... ++++ ++++|++++++ |+...|.+|.+.......+.+...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ns~--~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQNSL--HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce--eeccccceeee--EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 567788999999998865433222 23333 6677 89999999999 778889999997632222332221
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC---eEeecc----EEEE
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT---MLLWNG----ILWD 1667 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~---lLaSgg----rLWD 1667 (1922)
-.+..|+.....|+++ ..||++.|||++......... +...+.+.....++.|+|-|. ++++-+ .+-|
T Consensus 206 gF~~S~s~~~~~FAv~---~Qdg~~~I~DVR~~~tpm~~~--sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVV---FQDGTCAIYDVRNMATPMAEI--SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ceeeeeccCcceEEEE---ecCCcEEEEEecccccchhhh--cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 2788999999999999 899999999999754433222 111111223334489998663 344555 8999
Q ss_pred cCCCcceeeec-------cCC-Cce-EEEEecCCCEEEEEe
Q 000177 1668 RRNSVPVHRFD-------QFT-DHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1668 lrtgk~I~kf~-------gh~-~~V-sVaFSPdG~~LASGS 1699 (1922)
+|+++-...+. .|. +.+ ...|+.++.-+.+.+
T Consensus 281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred cccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 99886443331 222 223 667776665554444
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0015 Score=79.16 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=97.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc----eeeeccCCCCeeEEEeeecC-CCcEEEE---ecCCcEEEeccC
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP----LESCTSHQAPVTLVQSHLSG-ETQLLLS---SSSQDVHLWNAS 1582 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~----l~tL~gHss~VtsLq~afSp-DG~lLaS---SsDgtVkLWDl~ 1582 (1922)
.++.+.+++.+++||.+..+....++++..... ...+ +-...-+.+ .|.. +...+++ |+...+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai--~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAI--SFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCccee--eeeeccceEEEEeecCCceeeeeeccc
Confidence 345667788899999998888887887765443 1111 111122223 2222 3334444 346677788776
Q ss_pred CCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCC
Q 000177 1583 SIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSD 1656 (1922)
Q Consensus 1583 t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG 1656 (1922)
. +.+. .+-|| ..++|+||+++|+++ ..|..|+|-....-..+.+|. .||...+ ++.-++.
T Consensus 141 ~--~~~~-~~lGhvSml~dVavS~D~~~Iita---DRDEkIRvs~ypa~f~Iesfc--------lGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 141 S--GRCE-PILGHVSMLLDVAVSPDDQFIITA---DRDEKIRVSRYPATFVIESFC--------LGHKEFVSTISLTDNY 206 (390)
T ss_pred c--cCcc-hhhhhhhhhheeeecCCCCEEEEe---cCCceEEEEecCcccchhhhc--------cccHhheeeeeeccCc
Confidence 4 3332 22243 789999999999999 889999987776555555554 4676665 6666554
Q ss_pred CeEeecc-----EEEEcCCCcceeeecc
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQ 1679 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~g 1679 (1922)
. |+++| ++||+++|+++++++-
T Consensus 207 ~-LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 207 L-LLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred e-eeecCCCCcEEEEecccCCcccccch
Confidence 4 55555 9999999999887753
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0096 Score=75.24 Aligned_cols=166 Identities=19% Similarity=0.244 Sum_probs=104.6
Q ss_pred eecCCCcEEEEe---c-C-CcEEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1560 HLSGETQLLLSS---S-S-QDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1560 afSpDG~lLaSS---s-D-gtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
.|+|+++.++.. . . ..+.++|+.+.....+..+.++ ....|+|||++|+.+......-.|.++|+.+++... +
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-L 277 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-L 277 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-c
Confidence 789998877653 2 3 4699999998444445566665 567899999999988655455567788888776333 4
Q ss_pred ccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccC-CCceEEEEecCCCEEEEEeE----
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQF-TDHGGGGFHPAGNEVIINSE---- 1700 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh-~~~VsVaFSPdG~~LASGSe---- 1700 (1922)
.. ..+... .-.|+|+|+.++-.+ .++|...+.. ..+... .......|+|+|++|+..+.
T Consensus 278 t~------~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 278 TN------GFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred cc------CCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 31 111111 378999999988544 4555554443 222222 22227899999999988772
Q ss_pred ----EEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEE
Q 000177 1701 ----VWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1701 ----IWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
+.|+.++..++.+..... ..-.|.|+|.++....
T Consensus 350 ~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 350 WDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 233333332333332222 4778999999888763
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.012 Score=69.28 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=104.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-C------CCCeeEEEeeecCC-------CcEEEEecCCcE
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-H------QAPVTLVQSHLSGE-------TQLLLSSSSQDV 1576 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-H------ss~VtsLq~afSpD-------G~lLaSSsDgtV 1576 (1922)
.-..++||||+.+||.+...|+|++||+.. ..+..+.. + ..+|..+.| .+- -.+|+..-+|.+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~F--l~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIF--LEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEe--eccccccccceeEEEEecccee
Confidence 456799999999999999999999999864 44444422 1 345555632 221 245555667766
Q ss_pred EEeccCC---CCCCcceEec-------cceeEEEcCCCCEEEEeecCCCCC--------eEEEEECCCCceeeeeccccc
Q 000177 1577 HLWNASS---IAGGPMHSFE-------GCKAARFSNSGNLFAALPTETSDR--------GILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1577 kLWDl~t---~~gk~l~tf~-------gh~sVaFSPDG~~LaSgS~~S~Dg--------tIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
+=|-+.. ...+..++|. |+.++.|+|..+.|+.|+....+. -+..|.+-++.+-
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py-------- 193 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY-------- 193 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc--------
Confidence 6555422 1122334432 358899999988888875433221 1333333322211
Q ss_pred cccCCCCcceEEEEcCCCCeEeec-c-EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWN-G-ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSg-g-rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
.....+-+...-... . .+|.+-+.+.........+.| .+..||||..||+.. -+|++-+.++.
T Consensus 194 ---------yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 194 ---------YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ---------EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 111111111111111 1 344433322222112233455 899999999999887 49999887777
Q ss_pred EEEcCC
Q 000177 1711 RSVPSL 1716 (1922)
Q Consensus 1711 ~tl~gH 1716 (1922)
+..+-.
T Consensus 265 ~~W~~~ 270 (282)
T PF15492_consen 265 RSWKQD 270 (282)
T ss_pred cccchh
Confidence 666533
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.066 Score=64.69 Aligned_cols=198 Identities=16% Similarity=0.177 Sum_probs=124.4
Q ss_pred eecCC-CcEEEEec-CC-cEEEeccCCCCCCcceEecc----c--eeEEEcCCCCEEEEeecC--CCCCeEEEEECC-CC
Q 000177 1560 HLSGE-TQLLLSSS-SQ-DVHLWNASSIAGGPMHSFEG----C--KAARFSNSGNLFAALPTE--TSDRGILLYDIQ-TY 1627 (1922)
Q Consensus 1560 afSpD-G~lLaSSs-Dg-tVkLWDl~t~~gk~l~tf~g----h--~sVaFSPDG~~LaSgS~~--S~DgtIrIWDlr-Tg 1627 (1922)
+.+|. ...++.+. -| ...+||..+ ++.+..+.. | -...|++||++|++.-.+ ...|.|-|||.. +.
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~--g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRT--GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCC--CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 56774 44444453 33 477899887 666655532 2 236899999999997322 346889999999 66
Q ss_pred ceeeeeccccccccCCCCcceE--EEEcCCCCeEe-ecc----------------------EEEEcCCCcceeeec----
Q 000177 1628 QLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLL-WNG----------------------ILWDRRNSVPVHRFD---- 1678 (1922)
Q Consensus 1628 k~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLa-Sgg----------------------rLWDlrtgk~I~kf~---- 1678 (1922)
+.+..+. .|.+.- +.+.|||+.|+ ..| .+-|..+|+.+.+..
T Consensus 89 ~ri~E~~---------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 89 RRIGEFP---------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EEEeEec---------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 6666665 222222 88999995544 433 456677888776643
Q ss_pred cCCCce-EEEEecCCCEEEEEe---E-------EEecCCCeEEEEEcCCC-------c--eeEEEccCCCEEEEEEccCc
Q 000177 1679 QFTDHG-GGGFHPAGNEVIINS---E-------VWDLRKFRLLRSVPSLD-------Q--TTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1679 gh~~~V-sVaFSPdG~~LASGS---e-------IWDLrTgklL~tl~gH~-------~--~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
-|...+ -+++.++|..++..- . +.-.+.++.+..+.... . -+|+++++|.++++++
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts---- 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS---- 235 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC----
Confidence 255566 889999987665544 1 33333444444443221 1 4999999999998873
Q ss_pred hhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCC
Q 000177 1739 EDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1739 ~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdd 1787 (1922)
|....+.+||..+...+...... .+..++..+++
T Consensus 236 --------------PrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~ 269 (305)
T PF07433_consen 236 --------------PRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG 269 (305)
T ss_pred --------------CCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc
Confidence 45567778887777766555432 23344444444
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00086 Score=79.70 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=101.2
Q ss_pred cCCCcEEEEecCCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-----ceeeeeccc
Q 000177 1562 SGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTY-----QLEAKLSDT 1636 (1922)
Q Consensus 1562 SpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-----k~i~tL~d~ 1636 (1922)
+-.+..+++|.+..|-|-|+.++.++...+-..+.+..|+..++.+..| ...|.|..+|++.+ .+...+.
T Consensus 222 ni~gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~G---cRngeI~~iDLR~rnqG~~~~a~rly-- 296 (425)
T KOG2695|consen 222 NIMGYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNG---CRNGEIFVIDLRCRNQGNGWCAQRLY-- 296 (425)
T ss_pred ccceeeecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEec---ccCCcEEEEEeeecccCCCcceEEEE--
Confidence 3345555567888999999988444434444456788899888888888 78899999999975 3344443
Q ss_pred cccccCCCCcceEEEEcC-CCCeEeecc-----EEEEcCCCcc---eeeeccCCCce-E--EEEecCCCEEEEEe-----
Q 000177 1637 SVNLTGRGHAYSQIHFSP-SDTMLLWNG-----ILWDRRNSVP---VHRFDQFTDHG-G--GGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtgk~---I~kf~gh~~~V-s--VaFSPdG~~LASGS----- 1699 (1922)
++..+.++..-. ++++|++.+ ++||.|.-++ |.+|.||.+.. . +..++....|++++
T Consensus 297 ------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 297 ------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred ------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 333333333333 566776555 9999997666 99999998755 3 44456666777777
Q ss_pred EEEecCCCeEEEEEcC
Q 000177 1700 EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~g 1715 (1922)
+||.++.++++.+++-
T Consensus 371 RiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEecccCceeeccCC
Confidence 6999999999999883
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=76.99 Aligned_cols=89 Identities=13% Similarity=0.243 Sum_probs=73.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
++......++.++.+|. ++|+|++|.+...+|++|..|..|.+||+.-++. ...+.+|...|..+ .+.+-.+.+.+
T Consensus 181 r~~~~~~~~i~~~~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l--~~~~~t~~l~S 257 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL--SYAQHTRQLIS 257 (404)
T ss_pred EEeecCCceEEEEcCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh--hhhhhheeeee
Confidence 34455667889999999 9999999999999999999999999999965543 34668999999999 44455555555
Q ss_pred -ecCCcEEEeccCC
Q 000177 1571 -SSSQDVHLWNASS 1583 (1922)
Q Consensus 1571 -SsDgtVkLWDl~t 1583 (1922)
+.|+.|.+||++.
T Consensus 258 ~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNV 271 (404)
T ss_pred ccCCCeEEEEeccc
Confidence 6699999999975
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0034 Score=73.65 Aligned_cols=174 Identities=13% Similarity=0.087 Sum_probs=113.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCCCCCC
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
-.++.|++.+..++++..+|.+.+-+....... ++++.|.-+++.. .|+.. .+++.+| +|+.+.-||++.+ ++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta--~f~~~~pnlvytGgDD~~l~~~D~R~p-~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTA--KFSDKEPNLVYTGGDDGSLSCWDIRIP-KT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeee--ecccCCCceEEecCCCceEEEEEecCC-cc
Confidence 457889999999999999999996665555444 3789999999999 44433 3577775 5999999999942 33
Q ss_pred cceEe-----ccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCe--
Q 000177 1588 PMHSF-----EGCKAARFSN-SGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM-- 1658 (1922)
Q Consensus 1588 ~l~tf-----~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l-- 1658 (1922)
.+.+- .|+.++.-+| .+.+|++| +.|..|++||.+. ++++..-+ .+..++.+.++|.-..
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TG---sYDe~i~~~DtRnm~kPl~~~~--------v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATG---SYDECIRVLDTRNMGKPLFKAK--------VGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEe---ccccceeeeehhcccCccccCc--------cccceEEEEecchhhhHH
Confidence 33331 2345666565 57899999 8999999999994 45443322 3456677888887652
Q ss_pred Eeec---c-EEEEcCCCcc-----eeeeccCCCce-EEEEecCCCEEEEEe
Q 000177 1659 LLWN---G-ILWDRRNSVP-----VHRFDQFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1659 LaSg---g-rLWDlrtgk~-----I~kf~gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
++++ | +|-+...+.. ...++.|..-. ...|.....+|++++
T Consensus 270 L~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 270 LAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred HHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 2222 1 7777765432 22223333322 445533345666655
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.018 Score=65.56 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=110.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe-ccc--
Q 000177 1519 GDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF-EGC-- 1595 (1922)
Q Consensus 1519 PDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf-~gh-- 1595 (1922)
+++.++++++.++.|..||..+|+.+..+.. ...+... ....++.+++.+.++.+..+|..+ ++.+.++ ...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~--~~~~~~~v~v~~~~~~l~~~d~~t--G~~~W~~~~~~~~ 108 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA--PVVDGGRVYVGTSDGSLYALDAKT--GKVLWSIYLTSSP 108 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG--EEEETTEEEEEETTSEEEEEETTT--SCEEEEEEE-SSC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccce--eeecccccccccceeeeEecccCC--cceeeeecccccc
Confidence 3577888889999999999999998877654 2222111 112356666667788999999888 7777764 211
Q ss_pred -----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC---CCcceEEEEcCCCCeEeecc----
Q 000177 1596 -----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR---GHAYSQIHFSPSDTMLLWNG---- 1663 (1922)
Q Consensus 1596 -----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~---gh~~~vVaFSPdG~lLaSgg---- 1663 (1922)
.......+++.++.+ ..++.|..+|+++|+.+....-........ ......-.+..++.++++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~---~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~ 185 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVG---TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRV 185 (238)
T ss_dssp TCSTB--SEEEEETTEEEEE---ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSE
T ss_pred ccccccccCceEecCEEEEE---eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeE
Confidence 122233347777776 558999999999999988775111000000 00011111222445555443
Q ss_pred EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1664 ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1664 rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
..+|+.+++.+.... .........+++..|++++ -.||++|++.+-
T Consensus 186 ~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 186 VAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 334888888654332 2223223556777777766 389999998764
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.055 Score=64.04 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=83.2
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
+.+.+|++|+.-.|..|-|-..+.....++.+.+- -+.++|+||+..|+.+ ...|+|++||+.. ..+..
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a---~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYA---ESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEE---cCCCeEEEEeccc-ceeEE
Confidence 56789999998888888887776644444333321 1679999999999998 7789999999985 44556
Q ss_pred eccccccccCCCCcceEEEEcCCC-------CeEee--cc----EEEEcC---CCcceeeecc---CCCce-EEEEecCC
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSD-------TMLLW--NG----ILWDRR---NSVPVHRFDQ---FTDHG-GGGFHPAG 1692 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG-------~lLaS--gg----rLWDlr---tgk~I~kf~g---h~~~V-sVaFSPdG 1692 (1922)
+++.........+.+..+.|-+.- ++++. .| .+-... ..+..+.|.. +...| +++|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 653221111111222224444322 33332 22 222222 2244555543 34566 89999999
Q ss_pred CEEEEEe
Q 000177 1693 NEVIINS 1699 (1922)
Q Consensus 1693 ~~LASGS 1699 (1922)
+.|++|+
T Consensus 160 ~LLlVgG 166 (282)
T PF15492_consen 160 RLLLVGG 166 (282)
T ss_pred CEEEEec
Confidence 8888887
|
|
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00037 Score=94.02 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHhcCChHHhhhHhhHhhhhcchhHHHHHhhhcccHHHHHHHHhhhh
Q 000177 662 ELAIQLLECTQDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAA 713 (1922)
Q Consensus 662 ~yaLwLLecshds~r~~A~mFF~~sf~Fr~il~~FD~~dGLrkL~N~i~~l~ 713 (1922)
+|||-=|=.+=-|+|.. -++|++++--.||..|.. =-+..++++|....
T Consensus 2 ~Y~l~RLirGl~S~r~~--aR~Gfs~~Lte~l~~~~~-~~~~~vl~ll~~~~ 50 (784)
T PF04931_consen 2 QYALKRLIRGLASSRES--ARLGFSLALTELLSQLPE-ISVSSVLDLLKKKL 50 (784)
T ss_pred chhHHHHhcccCCChHH--HHHHHHHHHHHHHHhccc-CCHHHHHHHHHHhc
Confidence 46666554445555533 356777777778877753 33556666666543
|
The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00063 Score=56.43 Aligned_cols=38 Identities=16% Similarity=0.398 Sum_probs=34.0
Q ss_pred CCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1541 SSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1541 gk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
++++.++.+|.+.|++| +|+|++.+|+++ .|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i--~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSI--AWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEE--EEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEE--EEecccccceeeCCCCEEEEEC
Confidence 35678999999999999 889999999995 699999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.069 Score=69.54 Aligned_cols=179 Identities=15% Similarity=0.055 Sum_probs=105.8
Q ss_pred EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeeccEEEEcCCCcceeee
Q 000177 1598 ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1598 VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSggrLWDlrtgk~I~kf 1677 (1922)
+=++|||+.+... ....+.+.++|..+.+...++. .+.....+.++|+|+++++.+. +...+..+..+
T Consensus 198 ~PlpnDGk~l~~~--~ey~~~vSvID~etmeV~~qV~--------Vdgnpd~v~~spdGk~afvTsy--NsE~G~tl~em 265 (635)
T PRK02888 198 IPLPNDGKDLDDP--KKYRSLFTAVDAETMEVAWQVM--------VDGNLDNVDTDYDGKYAFSTCY--NSEEGVTLAEM 265 (635)
T ss_pred cccCCCCCEeecc--cceeEEEEEEECccceEEEEEE--------eCCCcccceECCCCCEEEEecc--CcccCcceeee
Confidence 3445566655433 2456778888888877766654 1112223899999999886642 33333333333
Q ss_pred ccCCCceEEE--------EecCCCEEEEEe---EEEecCC-----CeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchh
Q 000177 1678 DQFTDHGGGG--------FHPAGNEVIINS---EVWDLRK-----FRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLED 1740 (1922)
Q Consensus 1678 ~gh~~~VsVa--------FSPdG~~LASGS---eIWDLrT-----gklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~d 1740 (1922)
........+. +.++|++...++ .++|.++ .+.+..++--.. +.+.+||||++++++..
T Consensus 266 ~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank----- 340 (635)
T PRK02888 266 MAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK----- 340 (635)
T ss_pred ccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC-----
Confidence 3222222333 345787766655 3889988 567777774444 89999999999998832
Q ss_pred hhhhhcccccccCCcceEEEEecCCCce------------eeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1741 VMSAVHTRRVKHPLFAAFRTVDAINYSD------------IATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1741 v~s~lh~rr~ksp~~ssFrt~Da~dys~------------IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
+.+...++|....+. ++.+.+.-.-...+|+++|.... +-..++.+-.|
T Consensus 341 -------------lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ayt------slf~dsqv~kw 401 (635)
T PRK02888 341 -------------LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYT------TLFLDSQIVKW 401 (635)
T ss_pred -------------CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEE------eEeecceeEEE
Confidence 223344444444332 45555555556777888775222 12344666677
Q ss_pred EecC
Q 000177 1809 EIGR 1812 (1922)
Q Consensus 1809 EVGr 1812 (1922)
++..
T Consensus 402 n~~~ 405 (635)
T PRK02888 402 NIEA 405 (635)
T ss_pred ehHH
Confidence 7654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0061 Score=73.97 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=77.3
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
+.+.--.|++++.+.+|. ..|..++|||..+ +|..++.+..|+|.|+.+...+.++..| ..+++++|.... .++|.
T Consensus 176 ~~l~~~~fkssq~lp~~g-~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~h~IY 252 (463)
T KOG1645|consen 176 QKLESHDFKSSQILPGEG-SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-RHVIY 252 (463)
T ss_pred EEeccCCcchhhcccccc-hhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-cceeE
Confidence 334455677788788888 8999999999777 8999999999999999999999999888 889999554332 45666
Q ss_pred Eec-CCcEEEeccCCCCCCcceEec
Q 000177 1570 SSS-SQDVHLWNASSIAGGPMHSFE 1593 (1922)
Q Consensus 1570 SSs-DgtVkLWDl~t~~gk~l~tf~ 1593 (1922)
+|. .|.|.|||++.. ..++..+.
T Consensus 253 aGl~nG~VlvyD~R~~-~~~~~e~~ 276 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQP-EGPLMELV 276 (463)
T ss_pred EeccCceEEEEEccCC-CchHhhhh
Confidence 675 899999999873 23344443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.2 Score=61.96 Aligned_cols=223 Identities=14% Similarity=0.073 Sum_probs=121.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccce---
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCK--- 1596 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh~--- 1596 (1922)
++..++.++.+|.|..||..+|+.+...... ..+.+. ....++.+++.+.++.+..||..+ ++.+.++....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~--p~v~~~~v~v~~~~g~l~a~d~~t--G~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSP--PLVANGLVVVRTNDGRLTALDAAT--GERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecC--CEEECCEEEEECCCCeEEEEEcCC--CceeeEEccCCCce
Confidence 5678889999999999999999987665432 222221 111255666667799999999987 77666554321
Q ss_pred eEE--EcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc----ceEEEEcCCCCeEeec--c--E
Q 000177 1597 AAR--FSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA----YSQIHFSPSDTMLLWN--G--I 1664 (1922)
Q Consensus 1597 sVa--FSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~----~~vVaFSPdG~lLaSg--g--r 1664 (1922)
.+. -+| .+..++.+ ..++.+..+|.++|+.+..............+. .....+. ++.+++.+ + .
T Consensus 179 ~~~~~~sp~~~~~~v~~~---~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 179 TLRGSASPVIADGGVLVG---FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVA 254 (377)
T ss_pred eecCCCCCEEECCEEEEE---CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEE
Confidence 000 011 13456666 667899999999998766543100000000000 0001111 33333322 1 7
Q ss_pred EEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEEEcc
Q 000177 1665 LWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1665 LWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSgs~~ 1736 (1922)
.||..+|+.+...... ...... ..+..|+.++ ..+|..+++.+-....... .+... .|..|+++.
T Consensus 255 a~d~~tG~~~W~~~~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~-- 327 (377)
T TIGR03300 255 ALDLRSGRVLWKRDAS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD-- 327 (377)
T ss_pred EEECCCCcEEEeeccC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe--
Confidence 8898888877766521 111222 2344444433 2678878877655432111 12122 355666652
Q ss_pred CchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC
Q 000177 1737 NLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD 1775 (1922)
Q Consensus 1737 d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk 1775 (1922)
....+..++..+.+.+......
T Consensus 328 -----------------~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 328 -----------------FEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred -----------------CCCEEEEEECCCCCEEEEEEcC
Confidence 1234566777777777666553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.042 Score=71.10 Aligned_cols=191 Identities=16% Similarity=0.102 Sum_probs=123.6
Q ss_pred CceeeEEecCCCCCCEEEEEEcCC------C------CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGD------S------SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPD------G------~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD 1564 (1922)
..+.++++.-|. ..|+.+.|.|- + -+||++...|.|.|||...+..+..+..|..+|..++|.+..+
T Consensus 44 s~q~iqsie~h~-s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 44 SLQLIQSIELHQ-SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhccccCc-cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 457788888999 99999999872 1 1678888899999999999998889999999999999876655
Q ss_pred Cc--EEEE-ecCCcEEEeccCCCCCCcceEecc-c---eeEEEcC-CCCEEEEeecCCCCCeEEEEECC-------CCce
Q 000177 1565 TQ--LLLS-SSSQDVHLWNASSIAGGPMHSFEG-C---KAARFSN-SGNLFAALPTETSDRGILLYDIQ-------TYQL 1629 (1922)
Q Consensus 1565 G~--lLaS-SsDgtVkLWDl~t~~gk~l~tf~g-h---~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlr-------Tgk~ 1629 (1922)
.. +|+. ....++.+|+..+ |+....+.. + .|+.+.| |.+.|..- +..|.+.+-+.- .|+.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdt--G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l---~s~g~vl~~~~l~~sep~~pgk~ 197 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDT--GEKFWKYDYSHEILSCFRVDPFDSRHFCVL---GSKGFVLSCKDLGLSEPDVPGKE 197 (1062)
T ss_pred cchheeEEecCCcEEEEEEccC--CceeeccccCCcceeeeeeCCCCcceEEEE---ccCceEEEEeccCCCCCCCCcee
Confidence 43 4444 6788999999988 666655542 2 5577777 55555554 445556555542 1222
Q ss_pred eeeeccccc-----------cccCCCCc-----c--eEEEEcCCCCeEe--ecc---EEEEcCCCcceeeeccCCCce-E
Q 000177 1630 EAKLSDTSV-----------NLTGRGHA-----Y--SQIHFSPSDTMLL--WNG---ILWDRRNSVPVHRFDQFTDHG-G 1685 (1922)
Q Consensus 1630 i~tL~d~s~-----------~~~~~gh~-----~--~vVaFSPdG~lLa--Sgg---rLWDlrtgk~I~kf~gh~~~V-s 1685 (1922)
.+.-.+..- +....... - ..++|+|.-+.++ +-- .++|+.-..++....-..+.+ -
T Consensus 198 ~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akf 277 (1062)
T KOG1912|consen 198 FQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKF 277 (1062)
T ss_pred EEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcce
Confidence 222111000 00000000 0 0167788654333 222 899998888887776666655 5
Q ss_pred EEEecCCC
Q 000177 1686 GGFHPAGN 1693 (1922)
Q Consensus 1686 VaFSPdG~ 1693 (1922)
+.|-|+++
T Consensus 278 v~vlP~~~ 285 (1062)
T KOG1912|consen 278 VDVLPDPR 285 (1062)
T ss_pred eEeccCCC
Confidence 66666654
|
|
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00017 Score=97.23 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 000177 1422 LDSLVVQYLKHQH 1434 (1922)
Q Consensus 1422 LdsIVtqyLr~QH 1434 (1922)
....+.+.+..+|
T Consensus 409 ~~~~~~~i~~~~~ 421 (784)
T PF04931_consen 409 SEQWVEDIFLFFH 421 (784)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444444
|
The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.049 Score=63.29 Aligned_cols=172 Identities=12% Similarity=0.181 Sum_probs=102.8
Q ss_pred EEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCceeeecc-----CCCCeeEEEeeecCCCcEEEEec-C--------CcE
Q 000177 1512 LTCITFL-GDSSHIAVGSHTKELKIFDSNSSSPLESCTS-----HQAPVTLVQSHLSGETQLLLSSS-S--------QDV 1576 (1922)
Q Consensus 1512 Vt~LaFS-PDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-----Hss~VtsLq~afSpDG~lLaSSs-D--------gtV 1576 (1922)
...+++. +++ .|+.+...+ +.++|..+++....+.. .....+.+ .+.++|++.++.. . +.|
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~--~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDV--AVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEE--EE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceE--EEcCCCCEEEEecCCCccccccccce
Confidence 6777888 565 455555544 45669988865443322 34556788 8899999888842 1 335
Q ss_pred EEeccCCCCCCcceE---eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-e---eeeccccccccCCCCcceE
Q 000177 1577 HLWNASSIAGGPMHS---FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-E---AKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~t---f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i---~tL~d~s~~~~~~gh~~~v 1649 (1922)
..++.. ++.... +...+.++|+|+++.|+.+ ++..+.|..||+..... + ..+. .. ......+.
T Consensus 118 ~~~~~~---~~~~~~~~~~~~pNGi~~s~dg~~lyv~--ds~~~~i~~~~~~~~~~~~~~~~~~~----~~-~~~~g~pD 187 (246)
T PF08450_consen 118 YRIDPD---GKVTVVADGLGFPNGIAFSPDGKTLYVA--DSFNGRIWRFDLDADGGELSNRRVFI----DF-PGGPGYPD 187 (246)
T ss_dssp EEEETT---SEEEEEEEEESSEEEEEEETTSSEEEEE--ETTTTEEEEEEEETTTCCEEEEEEEE----E--SSSSCEEE
T ss_pred EEECCC---CeEEEEecCcccccceEECCcchheeec--ccccceeEEEeccccccceeeeeeEE----Ec-CCCCcCCC
Confidence 555544 222222 2224889999999987765 36778899999864322 1 1111 00 01111222
Q ss_pred -EEEcCCCCeEeec--c---EEEEcCCCcceeeeccCCCce-EEEE-ecCCCEEEEE
Q 000177 1650 -IHFSPSDTMLLWN--G---ILWDRRNSVPVHRFDQFTDHG-GGGF-HPAGNEVIIN 1698 (1922)
Q Consensus 1650 -VaFSPdG~lLaSg--g---rLWDlrtgk~I~kf~gh~~~V-sVaF-SPdG~~LASG 1698 (1922)
+++..+|++.++. + .++|.. |+.+..+....... +++| .|+.+.|.+.
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 9999999988862 2 677766 88888887663444 9999 4776665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.2 Score=61.82 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=72.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccceeEE
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAAR 1599 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh~sVa 1599 (1922)
.+..|++++.+|.|.-||..+|+.+-.+.-........ .. .++.+++.+.++.+..||..+ ++.+.+......+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p--~v-~~~~v~v~~~~g~l~ald~~t--G~~~W~~~~~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV--GA-DGGLVFVGTEKGEVIALDAED--GKELWRAKLSSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce--EE-cCCEEEEEcCCCEEEEEECCC--CcEeeeeccCceee
Confidence 36789999999999999999998876654333222222 22 245555556799999999987 77666554321122
Q ss_pred EcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1600 FSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1600 FSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
-+| .+..++.+ ..++.+..||.++|+.+..+.
T Consensus 139 ~~p~v~~~~v~v~---~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 139 SPPLVANGLVVVR---TNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred cCCEEECCEEEEE---CCCCeEEEEEcCCCceeeEEc
Confidence 222 24556666 678999999999999887765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.013 Score=74.00 Aligned_cols=174 Identities=16% Similarity=0.208 Sum_probs=109.0
Q ss_pred CCEEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEec--CCc--EEEe
Q 000177 1510 ALLTCITFLGDSSHIAVGS---HT-KELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSSS--SQD--VHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS---~D-GtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSSs--Dgt--VkLW 1579 (1922)
..+..-+|+|+++.++.-+ .. ..|.++++++++..... .+|.. .+.|+|||+.|+-+. |+. |.++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~-----~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG-----APAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC-----CccCCCCCCEEEEEECCCCCccEEEE
Confidence 5677788999998765543 22 46899999988765544 44432 238899999888753 554 6677
Q ss_pred ccCCCCCCcceEec---cc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFE---GC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~---gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
|+.. +. +..+. ++ ..-.|+|||++|+..+..+.--.|.++|...+.. ..+.. .+.....-.|+|+
T Consensus 268 dl~~--~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~-------~~~~~~~p~~Spd 336 (425)
T COG0823 268 DLDG--KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF-------SGGGNSNPVWSPD 336 (425)
T ss_pred cCCC--Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec-------cCCCCcCccCCCC
Confidence 7765 33 33333 22 5678999999999986655555788888887655 22320 1122225789999
Q ss_pred CCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1656 DTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1656 G~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
|++++..+ .+.|+.++..++.+......-.-.|.|||..++..+
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 99998554 233333333233332222222568888888776555
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.15 Score=58.05 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=107.3
Q ss_pred CCcEEEEECCCCCceeeecc---CCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc--eeEEEcCCC
Q 000177 1530 TKELKIFDSNSSSPLESCTS---HQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC--KAARFSNSG 1604 (1922)
Q Consensus 1530 DGtIkIWDl~tgk~l~tL~g---Hss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh--~sVaFSPDG 1604 (1922)
+|+|..||..+|+.+-...- ....+.. ....++.+++++.++.+..||..+ ++.+.++... ........+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT---AVPDGGRVYVASGDGNLYALDAKT--GKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET---EEEETTEEEEEETTSEEEEEETTT--SEEEEEEECSSCGGSGEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce---EEEeCCEEEEEcCCCEEEEEECCC--CCEEEEeeccccccceeeecc
Confidence 68899999999998877642 2222211 112355555556899999999988 7777666531 111112234
Q ss_pred CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec--c--EEEEcCCCcceeeeccC
Q 000177 1605 NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN--G--ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1605 ~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg--g--rLWDlrtgk~I~kf~gh 1680 (1922)
..++.+ ..++.+..+|..+|+.+..+....... ..........+. .+.+++.. + ..+|+++|+.+.++...
T Consensus 77 ~~v~v~---~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 77 GRVYVG---TSDGSLYALDAKTGKVLWSIYLTSSPP-AGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TEEEEE---ETTSEEEEEETTTSCEEEEEEE-SSCT-CSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cccccc---cceeeeEecccCCcceeeeeccccccc-cccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 555555 466799999999999988742111000 001112223333 22333333 2 88899999988887664
Q ss_pred CCc----------e-EEEEecCCCEEEEEe-E----EEecCCCeEEEEEcCCCceeEEEccCCCEEEEEE
Q 000177 1681 TDH----------G-GGGFHPAGNEVIINS-E----VWDLRKFRLLRSVPSLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1681 ~~~----------V-sVaFSPdG~~LASGS-e----IWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs 1734 (1922)
... + .-....++ .+..++ + .+|+.+++.+-..+ .........+.+..|+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEECCCTEEEEEE
T ss_pred CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCceeeCCEEEEEe
Confidence 422 1 11122244 444333 1 23888888664333 2222222567777888774
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.023 Score=73.96 Aligned_cols=141 Identities=16% Similarity=0.254 Sum_probs=93.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-----CcEEEEec-CCcEEEeccCCCC-CCc--
Q 000177 1518 LGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-----TQLLLSSS-SQDVHLWNASSIA-GGP-- 1588 (1922)
Q Consensus 1518 SPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-----G~lLaSSs-DgtVkLWDl~t~~-gk~-- 1588 (1922)
..+|.+++|||.||+|.|..+.+.+...++.- .-++.+| +++|+ .+.+++|+ -| +.++.-+-.. ...
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksi--al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSI--ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV 155 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeE--EeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence 44799999999999999999988887766643 3678888 78887 34555544 55 7666433210 111
Q ss_pred ceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ecc--E
Q 000177 1589 MHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG--I 1664 (1922)
Q Consensus 1589 l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg--r 1664 (1922)
.+.-.| +.++.|. |++|+-+ +.+| |++||+.+++.+..++.+. ......--.+.+.|.++.++++ ++. +
T Consensus 156 l~~~eG~I~~i~W~--g~lIAWa---nd~G-v~vyd~~~~~~l~~i~~p~-~~~R~e~fpphl~W~~~~~LVIGW~d~v~ 228 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR--GNLIAWA---NDDG-VKVYDTPTRQRLTNIPPPS-QSVRPELFPPHLHWQDEDRLVIGWGDSVK 228 (846)
T ss_pred eecCccceEEEEec--CcEEEEe---cCCC-cEEEeccccceeeccCCCC-CCCCcccCCCceEecCCCeEEEecCCeEE
Confidence 122223 4788886 7788876 4444 8999999999988887433 1111111223399999999888 454 5
Q ss_pred EEEcC
Q 000177 1665 LWDRR 1669 (1922)
Q Consensus 1665 LWDlr 1669 (1922)
+..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 55665
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0013 Score=51.86 Aligned_cols=27 Identities=41% Similarity=0.399 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHc
Q 000177 1169 RELLLLIHEHLQASGLVTTAAQLLKEA 1195 (1922)
Q Consensus 1169 ~ELL~LI~~HL~~~GL~~TA~~L~kEA 1195 (1922)
++|.+||++||+.+|+.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.11 Score=68.28 Aligned_cols=208 Identities=10% Similarity=0.148 Sum_probs=126.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCC-eeEEEeeecCCCcEEEE-ecCC-----cEEEeccCC
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAP-VTLVQSHLSGETQLLLS-SSSQ-----DVHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~-VtsLq~afSpDG~lLaS-SsDg-----tVkLWDl~t 1583 (1922)
.|+| |++.+..++.|+.+|.|.+++- ..+.+..|+.+... |..+ ....+..+|++ +.|. .++||+++.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L--~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFL--YILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHh--hcccCceEEEEEeecCCCCceEEEEecccc
Confidence 4565 6678889999999998877763 34455778888777 6666 22333356766 5433 589999976
Q ss_pred CC-C---Ccc---eEec---c-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC---CceeeeeccccccccCCCC
Q 000177 1584 IA-G---GPM---HSFE---G-----CKAARFSNSGNLFAALPTETSDRGILLYDIQT---YQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1584 ~~-g---k~l---~tf~---g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT---gk~i~tL~d~s~~~~~~gh 1645 (1922)
.. . .++ +.+. + ..+++.|.+-+.++.| -.+|.|..+.-.- ......+. ...+.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~G---f~nG~V~~~~GDi~RDrgsr~~~~------~~~~~ 172 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCG---FTNGLVICYKGDILRDRGSRQDYS------HRGKE 172 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEE---ecCcEEEEEcCcchhccccceeee------ccCCC
Confidence 31 1 223 1111 0 2567888888888888 7789998885321 11111111 01234
Q ss_pred cceEEEEcCCCCe--Ee-ecc--EEEEcCCCccee-eeccCCCce-EEEEecCCC-EEEEEeE---EEecCCCeEEEEEc
Q 000177 1646 AYSQIHFSPSDTM--LL-WNG--ILWDRRNSVPVH-RFDQFTDHG-GGGFHPAGN-EVIINSE---VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1646 ~~~vVaFSPdG~l--La-Sgg--rLWDlrtgk~I~-kf~gh~~~V-sVaFSPdG~-~LASGSe---IWDLrTgklL~tl~ 1714 (1922)
++.-++|..++.. ++ |.. .+|.+....+.. +++.+.... |..|++... +++++++ +|+....++-.++.
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 4455888888765 33 333 788887333333 355555555 778887655 5666663 88887666666677
Q ss_pred -CCCceeEEEccCCCEEEEE
Q 000177 1715 -SLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1715 -gH~~~sVaFSPdG~~LaSg 1733 (1922)
||.. -+.|...|.+++..
T Consensus 253 ~g~kk-~~~~~~~g~~L~v~ 271 (933)
T KOG2114|consen 253 VGEKK-EMLVFSFGLLLCVT 271 (933)
T ss_pred CCCeE-EEEEEecCEEEEEE
Confidence 5554 44455556666655
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.049 Score=70.84 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=122.5
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----CCcEEEeccCCCCCCc
Q 000177 1515 ITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1515 LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----DgtVkLWDl~t~~gk~ 1588 (1922)
+=++|||+.+. +.-..+.+.+.|..+.+...++.--. .-..+ .++++|+++.+++ ..++...+... ...
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v--~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~ 272 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNV--DTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDW 272 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-Ccccc--eECCCCCEEEEeccCcccCcceeeecccc--Cce
Confidence 34566887653 33455677888888776665553211 22445 6788999887742 23455554433 222
Q ss_pred ceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-----CceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1589 MHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQT-----YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1589 l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-----gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
+..|.--..-++.++|++...+ +++|.++|.++ .+.+..++ .+....-+.++|||++++.++
T Consensus 273 ~vvfni~~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIP--------VGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 273 VVVFNIARIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVP--------VPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred EEEEchHHHHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEE--------CCCCccceEECCCCCEEEEeC
Confidence 2222221222455678866653 47899999998 34555554 123333389999999999777
Q ss_pred ------EEEEcCCCcc------------eeeeccCCCceEEEEecCCCEEEEEe-----EEEecCC----------CeEE
Q 000177 1664 ------ILWDRRNSVP------------VHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRK----------FRLL 1710 (1922)
Q Consensus 1664 ------rLWDlrtgk~------------I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrT----------gklL 1710 (1922)
.+.|+.+.+. +....-...+....|.++|+-..|-. -.||+.+ ...+
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~ 419 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIV 419 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcce
Confidence 7999887542 33333334455789999987443333 2799876 3556
Q ss_pred EEEcCCCc-ee------EEEccCCCEEEEEEc
Q 000177 1711 RSVPSLDQ-TT------ITFNARGDVIYAILR 1735 (1922)
Q Consensus 1711 ~tl~gH~~-~s------VaFSPdG~~LaSgs~ 1735 (1922)
..+.-|-+ -. =.-.|+|++|++..+
T Consensus 420 ~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 420 QKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 66654443 12 234789999998843
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0088 Score=77.63 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=108.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~ 1588 (1922)
+.++|++++ +++|+-|+.+|.|++++.+ ++. .+...|+.. .-+|.+++||+ ||+|.|-.+-+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc--------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 568899988 7899999999999999974 443 444555543 34899999975 9999999887722222
Q ss_pred ceEecc-ceeEEEcCC-----CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1589 MHSFEG-CKAARFSNS-----GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1589 l~tf~g-h~sVaFSPD-----G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
...|+- ..+++++|+ .+.+++| +.-| +.++.-+=-+...+. ..+...+++.+.+=.|+++++.
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~G---G~ag-lvL~er~wlgnk~~v-------~l~~~eG~I~~i~W~g~lIAWa 176 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSG---GMAG-LVLSERNWLGNKDSV-------VLSEGEGPIHSIKWRGNLIAWA 176 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeec---Ccce-EEEehhhhhcCccce-------eeecCccceEEEEecCcEEEEe
Confidence 334433 488999997 5788887 5556 666653311111111 0122334444444468899977
Q ss_pred c----EEEEcCCCcceeeeccCCCce-------EEEEecCCCEEEE
Q 000177 1663 G----ILWDRRNSVPVHRFDQFTDHG-------GGGFHPAGNEVII 1697 (1922)
Q Consensus 1663 g----rLWDlrtgk~I~kf~gh~~~V-------sVaFSPdG~~LAS 1697 (1922)
. ++||+.+++.+..+......+ .+.|.++.+.|+.
T Consensus 177 nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 177 NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 6 999999988777665443322 5788887665554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.23 Score=67.67 Aligned_cols=206 Identities=15% Similarity=0.235 Sum_probs=127.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEecc----CC-
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNA----SS- 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl----~t- 1583 (1922)
+.|.++.|..+++-|+.+..+|.|.+-|..+..... ..--...|.++ +||||.++++- ...+++.+.+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aa--swS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAA--SWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEE--eecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 689999999999999999999999999887664322 22235778888 88999998877 44566544322 11
Q ss_pred ----------------CCCCcceEecc------------------------c-eeEEEcCCCCEEEEeecC-CCC-CeEE
Q 000177 1584 ----------------IAGGPMHSFEG------------------------C-KAARFSNSGNLFAALPTE-TSD-RGIL 1620 (1922)
Q Consensus 1584 ----------------~~gk~l~tf~g------------------------h-~sVaFSPDG~~LaSgS~~-S~D-gtIr 1620 (1922)
+-|+.-..|.| | ++|.|--||++|++..-. ..+ +.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 00111112221 1 459999999999883211 123 7899
Q ss_pred EEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcc----eeeeccCCCce-EEE
Q 000177 1621 LYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVP----VHRFDQFTDHG-GGG 1687 (1922)
Q Consensus 1621 IWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~----I~kf~gh~~~V-sVa 1687 (1922)
+||-+ |..-. .. ........+++|-|.|.++++-. .+|. ++|-. +-.+......+ .++
T Consensus 226 V~drE-g~Lns-~s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 226 VYDRE-GALNS-TS------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred Eeccc-chhhc-cc------CcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheee
Confidence 99987 44322 11 11233445599999999998554 3444 44422 22233333324 899
Q ss_pred EecCCCEEEEEe--------EEEecCCCeE--EEEEcCCCceeEEEccCC
Q 000177 1688 FHPAGNEVIINS--------EVWDLRKFRL--LRSVPSLDQTTITFNARG 1727 (1922)
Q Consensus 1688 FSPdG~~LASGS--------eIWDLrTgkl--L~tl~gH~~~sVaFSPdG 1727 (1922)
|+.++..|++-. ++|-+.+.+- .+.+.-...--+.|+|.-
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~ 346 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVT 346 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCC
Confidence 999999998833 4898887643 222222222236677744
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.022 Score=68.26 Aligned_cols=125 Identities=16% Similarity=0.292 Sum_probs=85.8
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-------------------------------------
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS------------------------------------- 1538 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl------------------------------------- 1538 (1922)
.+....+....|. ..|..+-|+-...++++.+.|..+.---.
T Consensus 102 nkm~~~r~~~~h~-~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQ-ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred hhcchhhhhhhhh-cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence 3444455556677 78888888877777777777765432111
Q ss_pred ----CCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEE
Q 000177 1539 ----NSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAA 1609 (1922)
Q Consensus 1539 ----~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaS 1609 (1922)
..-..+.++.+|.++|+++ .|.+...+|.+| +|..|.+||+.-. ......+.+| ..+..-+.-+.+++
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l--~Wd~~~~~LfSg~~d~~vi~wdigg~-~g~~~el~gh~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCL--KWDPGQRLLFSGASDHSVIMWDIGGR-KGTAYELQGHNDKVQALSYAQHTRQLIS 257 (404)
T ss_pred EEeecCCceEEEEcCcccceEEE--EEcCCCcEEEeccccCceEEEeccCC-cceeeeeccchhhhhhhhhhhhheeeee
Confidence 1112355778999999999 788888899886 5999999999741 1123444554 34444455677888
Q ss_pred eecCCCCCeEEEEECCCC
Q 000177 1610 LPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1610 gS~~S~DgtIrIWDlrTg 1627 (1922)
+ +.||.|.+||++..
T Consensus 258 ~---~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 258 C---GEDGGIVVWNMNVK 272 (404)
T ss_pred c---cCCCeEEEEeccce
Confidence 8 88999999999754
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0063 Score=70.56 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=68.9
Q ss_pred eeeecCceeeEEecC-CC-CCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCC-C-
Q 000177 1492 QFVYSRFRPWRTCRD-DA-GALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGE-T- 1565 (1922)
Q Consensus 1492 ~fi~srfrpirtLrg-H~-d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpD-G- 1565 (1922)
+|....++|+.+|.. |. ...|++++-+|. .+++++|+.||.|-+||...... ...++.|..+|+.+ .|+|. +
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV--~FHpk~p~ 237 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEV--HFHPKNPE 237 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhe--eccCCCch
Confidence 455667888888775 22 256999999994 45778899999999999987744 34558999999999 67774 3
Q ss_pred cEEEEecCCcEEEeccCC
Q 000177 1566 QLLLSSSSQDVHLWNASS 1583 (1922)
Q Consensus 1566 ~lLaSSsDgtVkLWDl~t 1583 (1922)
+++.++.||.+.-||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 455556799999999874
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.019 Score=75.18 Aligned_cols=169 Identities=17% Similarity=0.252 Sum_probs=116.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecccee-
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGCKA- 1597 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh~s- 1597 (1922)
++..++-|+....+..+|+.+.+..+...-..+.|+-+ .. +++++.+|+ .|+|.|-|.++ .+.+++|..|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~--Nnr~lf~G~t~G~V~LrD~~s--~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RY--NNRNLFCGDTRGTVFLRDPNS--FETIHTFDAHSGS 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--Ee--cCcEEEeecccceEEeecCCc--Cceeeeeeccccc
Confidence 34567788888888899999988888776556668877 33 778888876 99999999998 888999999843
Q ss_pred -EEEcCCCCEEEEeecCC------CCCeEEEEECCCCceeeeeccccccccCCCCcc-eEEEEcCCC--CeEee-cc---
Q 000177 1598 -ARFSNSGNLFAALPTET------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY-SQIHFSPSD--TMLLW-NG--- 1663 (1922)
Q Consensus 1598 -VaFSPDG~~LaSgS~~S------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-~vVaFSPdG--~lLaS-gg--- 1663 (1922)
..|.-.|+.|++|+... .|..|+|||++..+.+.-+. -+.. ..+.|+|.- +++++ .+
T Consensus 220 iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~---------~~~~P~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 220 ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ---------FPYGPQFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc---------cccCchhhhhcccccceEEEEecccce
Confidence 56888899999995432 47789999999877655443 1112 227777754 23332 22
Q ss_pred EEEEcCC-Ccc---eeeeccCCCce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1664 ILWDRRN-SVP---VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1664 rLWDlrt-gk~---I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
.+-|..+ +.+ +..+......+ ..+++++|+.++.|. .+|-
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 5555221 222 22232233334 889999999999987 3775
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0055 Score=47.05 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=34.3
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFD 1537 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWD 1537 (1922)
+++..+..|. ..|+++.|++++.++++|+.|+.|++|+
T Consensus 3 ~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHT-GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecC-CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778898 8999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.031 Score=68.79 Aligned_cols=206 Identities=14% Similarity=0.154 Sum_probs=135.2
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCC--cEEEEe--cC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSH-TKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGET--QLLLSS--SS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG--~lLaSS--sD 1573 (1922)
+..++.|- +.|.+++.+-+|.++.|++. |..+|+||+.+...+..+ ..-.+.+..+ .++.. .+|+.+ .+
T Consensus 46 VKhFraHL-~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv---~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 46 VKHFRAHL-GVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV---TSKGDKISLIAVSLFKS 121 (558)
T ss_pred hhhhHHHH-HHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe---cCCCCeeeeEEeecccC
Confidence 45567888 89999999999999999887 999999999876554322 2222333333 23321 244444 48
Q ss_pred CcEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cce-----eeeec-ccccccc
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQL-----EAKLS-DTSVNLT 1641 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~-----i~tL~-d~s~~~~ 1641 (1922)
+.+.++|-... ..+...+.+ +.++.+++.++.+++. ...|.|.-|.... .+. ...++ ++.+...
T Consensus 122 g~i~VvD~~~d-~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi---D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 122 GKIFVVDGFGD-FCQDGYFKKLHFSPVKKIRYNQAGDSAVSI---DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred CCcEEECCcCC-cCccceecccccCceEEEEeeccccceeec---cccceeEeecCCCcccCccccccccccccchhhcc
Confidence 89999998752 323333433 4778889999988887 6678999998872 111 11111 0111111
Q ss_pred CCCCcc-eEEEEcCCCCeEeecc-----EEEEcCCCcceeeec--------------------------------cCCCc
Q 000177 1642 GRGHAY-SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD--------------------------------QFTDH 1683 (1922)
Q Consensus 1642 ~~gh~~-~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~--------------------------------gh~~~ 1683 (1922)
...... ..+.|+|+|..+.+-+ ++++.++|+.++.++ .+...
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~ 277 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST 277 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence 112222 2399999999888666 788888887665442 12222
Q ss_pred e--EEEEecCCCEEEEEe----EEEecCCCeEEEEEc
Q 000177 1684 G--GGGFHPAGNEVIINS----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1684 V--sVaFSPdG~~LASGS----eIWDLrTgklL~tl~ 1714 (1922)
+ .++|...|++|+-++ +|.++.|+.+++.+.
T Consensus 278 ~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred ccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence 2 678999999999888 799999998888765
|
|
| >KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0022 Score=82.31 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=8.3
Q ss_pred cchhHHHHHhhhcccCC
Q 000177 905 EIIQPALNVLINLVCPP 921 (1922)
Q Consensus 905 ev~~~AL~Vl~ncVc~P 921 (1922)
+|..-||.+|.+|.|.-
T Consensus 319 ~vk~raL~ti~~lL~~k 335 (988)
T KOG2038|consen 319 EVKKRALKTIYDLLTNK 335 (988)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34444555555555543
|
|
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0053 Score=70.59 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=11.1
Q ss_pred eEEEEEecCCCCCCCC
Q 000177 1804 SARIYEIGRRRPTEDD 1819 (1922)
Q Consensus 1804 sVRLyEVGr~r~~EDD 1819 (1922)
++|.+..||+...+++
T Consensus 228 StR~hkyGRQ~~~~~~ 243 (314)
T PF06524_consen 228 STRSHKYGRQGQADED 243 (314)
T ss_pred eeecchhccccCCCcC
Confidence 4677888888765544
|
The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=75.68 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=77.8
Q ss_pred EEEEEEcCCC---CEEEEEeCCCcEEEEECCCC---CceeeeccCCCCeeEEEeeecCCCc-EEEEec-CCcEEEeccCC
Q 000177 1512 LTCITFLGDS---SHIAVGSHTKELKIFDSNSS---SPLESCTSHQAPVTLVQSHLSGETQ-LLLSSS-SQDVHLWNASS 1583 (1922)
Q Consensus 1512 Vt~LaFSPDG---~lLASGS~DGtIkIWDl~tg---k~l~tL~gHss~VtsLq~afSpDG~-lLaSSs-DgtVkLWDl~t 1583 (1922)
|-.+.|+|.. .++++-+... -.||++... .....+.||+.+|+.+ .|+|... ++++++ |..|..||+++
T Consensus 70 vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~--n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred hcceecccCCCCceeEEecCcch-hhhhhhhcCCccceEEEEecCccceecc--ccCCCCCcceeeccccccceeeeccC
Confidence 5566777633 2444444444 458988533 3445668999999999 8888765 555665 99999999998
Q ss_pred CCCCcceEecc----ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCc-eeeeec
Q 000177 1584 IAGGPMHSFEG----CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQ-LEAKLS 1634 (1922)
Q Consensus 1584 ~~gk~l~tf~g----h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~ 1634 (1922)
+ ..++..+.. ...|.|+- ++..+++ +..+.|.+||.+.|. .+.+++
T Consensus 147 p-~~p~ys~~~w~s~asqVkwnyk~p~vlas----shg~~i~vwd~r~gs~pl~s~K 198 (1081)
T KOG0309|consen 147 P-HRPFYSTSSWRSAASQVKWNYKDPNVLAS----SHGNDIFVWDLRKGSTPLCSLK 198 (1081)
T ss_pred C-CcceeeeecccccCceeeecccCcchhhh----ccCCceEEEeccCCCcceEEec
Confidence 4 445555543 36689987 5666665 556779999999765 344444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.31 Score=62.24 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=89.8
Q ss_pred CCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1550 HQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1550 Hss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
.......+ +++|+|++++.+.||.-.|+.... .+ -..+......+|.+.++ +++- ...++|.|+.--+...
T Consensus 31 ~~~~p~~l--s~npngr~v~V~g~geY~iyt~~~--~r-~k~~G~g~~~vw~~~n~-yAv~---~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSL--SHNPNGRFVLVCGDGEYEIYTALA--WR-NKAFGSGLSFVWSSRNR-YAVL---ESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEE--EE-TTSSEEEEEETTEEEEEETTT--TE-EEEEEE-SEEEE-TSSE-EEEE----TTS-EEEEETTEE-T
T ss_pred CCcCCeeE--EECCCCCEEEEEcCCEEEEEEccC--Cc-ccccCceeEEEEecCcc-EEEE---ECCCeEEEEEcCcccc
Confidence 44556788 899999999999999988888543 22 22333347788999555 5554 4478899974333333
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE----E
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE----V 1701 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe----I 1701 (1922)
..++. ..+....+-. |.+|...+ .+||+.+++.+++++... .-.+.|+++|.+++..++ |
T Consensus 102 ~k~i~--------~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 102 VKSIK--------LPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp T-------------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEE
T ss_pred ceEEc--------CCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEE
Confidence 23343 1122221222 77777555 899999999999997542 238999999999999884 4
Q ss_pred Ee--cC------------CCeEEEEEcCCCceeEEEccCCCEEEEE
Q 000177 1702 WD--LR------------KFRLLRSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1702 WD--Lr------------TgklL~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
++ .. ....+..+. -...+..|..+ -+||+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d-~fiYtT 213 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED-CFIYTT 213 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT-EEEEE-
T ss_pred EEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC-EEEEEc
Confidence 44 33 334444432 22368888877 666665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.1 Score=67.52 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=77.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~ 1588 (1922)
..|.--+++..+++|+.|+.-|.+.+|+-..++....-.+-...++++. ..|++..+++.+. .+.|.++-++.. ..+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~-~vs~~e~lvAagt~~g~V~v~ql~~~-~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVR-SVSSVEYLVAAGTASGRVSVFQLNKE-LPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEE-EecchhHhhhhhcCCceEEeehhhcc-CCC
Confidence 4455555667799999999999999999876654432222233333332 6788888888865 778888888761 111
Q ss_pred ce----Eec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1589 MH----SFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1589 l~----tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
-. .+. .+++++|++++..+++| ...|+|.+--+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysG---D~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSG---DSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeec---CCCceEEEEEech
Confidence 11 111 14899999999999998 7778888877776
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=75.03 Aligned_cols=73 Identities=10% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t 1583 (1922)
.+. +.|.|++++|+.+.|+.|..||+|.+||..++... +..+.-..+.+ +|+|+|.+++.|+ -|.+.+||+.-
T Consensus 257 pL~-s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~i--aWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLP-SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLI--AWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecC-CcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEE--EEcCCCcEEEEEcCCceEEEEEeec
Confidence 355 78999999999999999999999999998766333 32334456777 8999999999976 69999999975
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.5 Score=54.89 Aligned_cols=207 Identities=13% Similarity=0.146 Sum_probs=98.7
Q ss_pred EEcCCCCEEEEEe-CCC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceE
Q 000177 1516 TFLGDSSHIAVGS-HTK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1516 aFSPDG~lLASGS-~DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~t 1591 (1922)
+|.+||+.|+-++ .|| .+.+.|+.+++..+--.+-....... ..+++++.++- ....+|+-.|+.+...+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~--~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGG--FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT---EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccce--EEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 5788997655544 455 56667888877654333222222233 45677777765 556788888888743334555
Q ss_pred eccce--eEEEc--CCCCEEEEeecCC-------------------CCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1592 FEGCK--AARFS--NSGNLFAALPTET-------------------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1592 f~gh~--sVaFS--PDG~~LaSgS~~S-------------------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
+...+ +..|. .++..++..-... ....|.-.|+.+|+....+.++ .-..
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~--------~wlg 191 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT--------DWLG 191 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES--------S-EE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC--------cccc
Confidence 54432 34554 3556554431101 2345666788888776655421 2222
Q ss_pred EEEEcCCCCeEeec-c---------EEEEcCC-CcceeeeccCCCce---EEEEecCCCEEEEEe------E----EEec
Q 000177 1649 QIHFSPSDTMLLWN-G---------ILWDRRN-SVPVHRFDQFTDHG---GGGFHPAGNEVIINS------E----VWDL 1704 (1922)
Q Consensus 1649 vVaFSPdG~lLaSg-g---------rLWDlrt-gk~I~kf~gh~~~V---sVaFSPdG~~LASGS------e----IWDL 1704 (1922)
-+.|+|.+..++.= - +||-+++ |..++++..+.... -=.|.|+|..|.--+ . -.|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 37788877655532 2 8999885 44444444443322 337889998776544 1 2466
Q ss_pred CCCeEEEEEcCCCceeEEEccCCCEEEE
Q 000177 1705 RKFRLLRSVPSLDQTTITFNARGDVIYA 1732 (1922)
Q Consensus 1705 rTgklL~tl~gH~~~sVaFSPdG~~LaS 1732 (1922)
.|++............+.-|++|++++.
T Consensus 272 ~t~~~~~~~~~p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 272 DTGERRRLMEMPWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp TT--EEEEEEE-SEEEEEE-TTSSEEEE
T ss_pred CCCCceEEEeCCceeeeEEcCCCCEEEe
Confidence 6664432222212234555788888775
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.58 Score=57.87 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=55.2
Q ss_pred cCCCcEEEE----------ecCCcEEEeccCCCCCCcce--Ee-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1562 SGETQLLLS----------SSSQDVHLWNASSIAGGPMH--SF-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1562 SpDG~lLaS----------SsDgtVkLWDl~t~~gk~l~--tf-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
|||+++++. +..+.+.|||+.+ ++... .. .......|+|+|+.++.. .++.|.+++..++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~l~~~~~~~~~~~~sP~g~~~~~v----~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITPLTPPPPKLQDAKWSPDGKYIAFV----RDNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEESS-EETTBSEEEE-SSSTEEEEE----ETTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEECcCCccccccceeecCCCeeEEE----ecCceEEEECCCCC
Confidence 577877766 2355688999987 33222 11 124778999999999996 45789999998875
Q ss_pred eeeeeccccccccCCCC-----------cceEEEEcCCCCeEee
Q 000177 1629 LEAKLSDTSVNLTGRGH-----------AYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh-----------~~~vVaFSPdG~lLaS 1661 (1922)
..+.-.+.. .....|- ....+.|||||++|+.
T Consensus 75 ~~~lT~dg~-~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 75 ETQLTTDGE-PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp EEESES--T-TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred eEEeccccc-eeEEcCccceeccccccccccceEECCCCCEEEE
Confidence 443222110 0000011 1223899999998884
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.061 Score=70.80 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=103.4
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe--
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-- 1571 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-- 1571 (1922)
...+.+..++..--. +.|+-++. +++++.+|...|+|.+-|..+.+.+.++.+|++.|..+ +-.|++|++|
T Consensus 163 Dl~~~~e~r~~~v~a-~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf----Dv~GNlLitCG~ 235 (1118)
T KOG1275|consen 163 DLNTEKETRTTNVSA-SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF----DVQGNLLITCGY 235 (1118)
T ss_pred ecccceeeeeeeccC-CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee----eccCCeEEEeec
Confidence 344455555443333 45666554 58899999999999999999999999999999999887 3477888884
Q ss_pred --------cCCcEEEeccCCCCCCcce---EeccceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCC-ce-eeeecccc
Q 000177 1572 --------SSQDVHLWNASSIAGGPMH---SFEGCKAARFSNS-GNLFAALPTETSDRGILLYDIQTY-QL-EAKLSDTS 1637 (1922)
Q Consensus 1572 --------sDgtVkLWDl~t~~gk~l~---tf~gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTg-k~-i~tL~d~s 1637 (1922)
.|.-|+|||++. -+.+. .-.+-.-+.|+|. ...++.+ +.-|...+-|..+- .. ...+.
T Consensus 236 S~R~~~l~~D~FvkVYDLRm--mral~PI~~~~~P~flrf~Psl~t~~~V~---S~sGq~q~vd~~~lsNP~~~~~~--- 307 (1118)
T KOG1275|consen 236 SMRRYNLAMDPFVKVYDLRM--MRALSPIQFPYGPQFLRFHPSLTTRLAVT---SQSGQFQFVDTATLSNPPAGVKM--- 307 (1118)
T ss_pred ccccccccccchhhhhhhhh--hhccCCcccccCchhhhhcccccceEEEE---ecccceeeccccccCCCccceeE---
Confidence 266799999987 22222 2223355788985 4556666 56678888884321 11 11110
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc-----EEEE
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWD 1667 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWD 1667 (1922)
.+ ..+.....+.++++++.++.+. .+|-
T Consensus 308 v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 308 VN--PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred Ec--cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 00 0122244588999999888655 7887
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.8 Score=62.74 Aligned_cols=231 Identities=14% Similarity=0.197 Sum_probs=118.3
Q ss_pred CCeeEEEeeecCCC-cEEEEecCCcEEEeccCCCCCCcceEe-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1552 APVTLVQSHLSGET-QLLLSSSSQDVHLWNASSIAGGPMHSF-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1552 s~VtsLq~afSpDG-~lLaSSsDgtVkLWDl~t~~gk~l~tf-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
..|.++ .|..++ .+++....|.|.+-|..+.....+... .|+.+++|+||++.++.. +.++++.+ ...+..+
T Consensus 69 ~~i~s~--~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~li---T~~~tll~-mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSV--QFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALI---TGRQTLLF-MTKDFEP 142 (1265)
T ss_pred cceEEE--EEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEE---eCCcEEEE-Eeccccc
Confidence 578888 455554 455556789999888887333333333 357899999999998887 55565544 3222222
Q ss_pred eeeeccccccccCCCCcc-eEEEEcCCCCeE-eecc--EEEEcCCC-cceeeeccCCCceEEEEecCCCEEEEEe-----
Q 000177 1630 EAKLSDTSVNLTGRGHAY-SQIHFSPSDTML-LWNG--ILWDRRNS-VPVHRFDQFTDHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~-~vVaFSPdG~lL-aSgg--rLWDlrtg-k~I~kf~gh~~~VsVaFSPdG~~LASGS----- 1699 (1922)
+..-+ +......... ..+-|-.....+ -++| ...+.... +.+.....+...+++.|--||+++++..
T Consensus 143 i~E~~---L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 143 IAEKP---LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hhccc---cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 11110 0000000000 002222211111 1111 11110000 0111112344455899999999999965
Q ss_pred -----EEEecCCCeEEEEEcC--CCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc---ee
Q 000177 1700 -----EVWDLRKFRLLRSVPS--LDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS---DI 1769 (1922)
Q Consensus 1700 -----eIWDLrTgklL~tl~g--H~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys---~I 1769 (1922)
+|||-. |.+-.+-.. ....+++|-|.|..|++......++ .+.+|+..... -.
T Consensus 220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~----------------~IvffErNGL~hg~f~ 282 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS----------------DIVFFERNGLRHGEFV 282 (1265)
T ss_pred CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCC----------------cEEEEecCCccccccc
Confidence 488876 443222111 1126999999999999884332221 12222211110 00
Q ss_pred eeeccCC-ceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1770 ATIPVDR-CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1770 aTidvkr-~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
....... .+..++|+.++..+|++.... ..+.+++|-+|
T Consensus 283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~---e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 283 LPFPLDEKEVEELAWNSNSDILAVVTSNL---ENSLVQLWTTG 322 (1265)
T ss_pred cCCcccccchheeeecCCCCceeeeeccc---ccceEEEEEec
Confidence 1111122 288999999999999874222 22447777665
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.17 Score=65.84 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=84.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC--------C-CcEEEE-ec-CCcEEE
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG--------E-TQLLLS-SS-SQDVHL 1578 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp--------D-G~lLaS-Ss-DgtVkL 1578 (1922)
....++.|+|.| +||-|+.. .|.+-|..+.+.+.++.-|...|+.|.|+.-| . .+++++ ++ .|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 446788999877 66777654 68888999999999999999999999664222 1 344444 44 789999
Q ss_pred eccCCCCCCcceEeccc----eeEEEcC---CC-CEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1579 WNASSIAGGPMHSFEGC----KAARFSN---SG-NLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~gh----~sVaFSP---DG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
||+.. +..+..++.+ ..++|-+ +. ..+++- ..-.++.+|+..+|+......
T Consensus 94 ~d~~~--~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI---h~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 94 VDFVL--ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI---HGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred EEehh--hhhhhhhcCCCcchhheeeeeccCcchheeEEe---cCCcEEEEEEccCCceeeccc
Confidence 99987 5555555443 4466655 34 345554 556889999999999877654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.021 Score=70.16 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=122.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--C-CceeeeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEecc
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--S-SPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWNA 1581 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--g-k~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWDl 1581 (1922)
|. +.|+.|..+ -.+++++++.||.+|.|.-.. | +.+..+.+|-..|.++ +.+-++.++.| +. |..++++|+
T Consensus 8 hr-d~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl--~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HR-DVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSL--AVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cc-ceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhh--hccccceeEeeccCcccceeEEEe
Confidence 66 667766544 457999999999999998533 2 2344567899999999 77889999988 66 899999999
Q ss_pred CCCCCCcceEecc---ceeEEEcCC-C---CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1582 SSIAGGPMHSFEG---CKAARFSNS-G---NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1582 ~t~~gk~l~tf~g---h~sVaFSPD-G---~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
.+ ...+.-++- -..+.|... | ..++.. .-.++.+.++|-....+...+.+ ..+-.++.++.++|
T Consensus 84 En--~DminmiKL~~lPg~a~wv~skGd~~s~IAVs--~~~sg~i~VvD~~~d~~q~~~fk-----klH~sPV~~i~y~q 154 (558)
T KOG0882|consen 84 EN--FDMINMIKLVDLPGFAEWVTSKGDKISLIAVS--LFKSGKIFVVDGFGDFCQDGYFK-----KLHFSPVKKIRYNQ 154 (558)
T ss_pred ec--cchhhhcccccCCCceEEecCCCCeeeeEEee--cccCCCcEEECCcCCcCccceec-----ccccCceEEEEeec
Confidence 87 222221111 123334332 2 134433 24678999999876554322210 11122333477788
Q ss_pred CCCeEeecc-----EEEEcCC---------------CcceeeeccCCCc-eEEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1655 SDTMLLWNG-----ILWDRRN---------------SVPVHRFDQFTDH-GGGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrt---------------gk~I~kf~gh~~~-VsVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
.+..+++.. .-|...- -.-+.-|...... .++.|+|+|..+.+-+ +++++++++
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 877777554 5676551 1112222222222 3899999999998877 488888888
Q ss_pred EEEEEc
Q 000177 1709 LLRSVP 1714 (1922)
Q Consensus 1709 lL~tl~ 1714 (1922)
+++.+.
T Consensus 235 lvqeiD 240 (558)
T KOG0882|consen 235 LVQEID 240 (558)
T ss_pred hhhhhh
Confidence 766543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.083 Score=67.52 Aligned_cols=111 Identities=12% Similarity=0.127 Sum_probs=75.2
Q ss_pred EEEEEEcC-CCCEEEE----EeCCCcE----EEEECCCCCcee---eeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEE
Q 000177 1512 LTCITFLG-DSSHIAV----GSHTKEL----KIFDSNSSSPLE---SCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHL 1578 (1922)
Q Consensus 1512 Vt~LaFSP-DG~lLAS----GS~DGtI----kIWDl~tgk~l~---tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkL 1578 (1922)
..++.||. ++..+.| .+.+|.+ .+|++..++... +--.+...|.++ +++|+...++. |.||+|.+
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c--a~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC--ARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE--ecCcccceEEEEecCCeEEE
Confidence 46777876 4444443 2334443 567776554322 113567788888 88998777666 67999999
Q ss_pred eccCCCCCCcceEecc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1579 WNASSIAGGPMHSFEG--CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
||... +.....-.. .+.++|||+|..|++| +..|.+.+||+.-...
T Consensus 286 yD~~~--~~t~~~ka~~~P~~iaWHp~gai~~V~---s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 286 YDTTR--GVTLLAKAEFIPTLIAWHPDGAIFVVG---SEQGELQCFDMALSPI 333 (545)
T ss_pred EEcCC--CeeeeeeecccceEEEEcCCCcEEEEE---cCCceEEEEEeecCcc
Confidence 99976 221111111 3789999999999999 8889999999975443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.63 Score=55.26 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=69.8
Q ss_pred EecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEEeeecCCCcEEEEec-CCcEEEe
Q 000177 1503 TCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQSHLSGETQLLLSSS-SQDVHLW 1579 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq~afSpDG~lLaSSs-DgtVkLW 1579 (1922)
.+.+-. ..+..++|+|+.+ ++++....+.|..++. +|+.++++.-. .+..-.| .+..++.++++.. ++.+.++
T Consensus 16 ~l~g~~-~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI--~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGIL-DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGI--TYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT---S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEE--EE-STTEEEEEETTTTEEEEE
T ss_pred ECCCcc-CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeE--EEECCCEEEEEEcCCCcEEEE
Confidence 455644 5699999999755 6677778888988887 58888776332 3456777 6778889998875 8899999
Q ss_pred ccCCCCCCc-c---eEec---------cceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1580 NASSIAGGP-M---HSFE---------GCKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1580 Dl~t~~gk~-l---~tf~---------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
++....... . ..+. +.-.++|.|.++.|+.+ ....-..||.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~---kE~~P~~l~~~~ 147 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA---KERKPKRLYEVN 147 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE---EESSSEEEEEEE
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE---eCCCChhhEEEc
Confidence 884411111 1 1121 12568999987777766 333444555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.95 Score=53.99 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=115.3
Q ss_pred EEEcCC-CCEEEEEeCCCc-EEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCC
Q 000177 1515 ITFLGD-SSHIAVGSHTKE-LKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAG 1586 (1922)
Q Consensus 1515 LaFSPD-G~lLASGS~DGt-IkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~g 1586 (1922)
++|+|. ..-++.+-.-|+ ..+||.+..+...++...++.-+.=.-.||+||.+|.... -|.|-|||.+.. .
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~-f 151 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG-F 151 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc-c
Confidence 778873 445666666665 4789988877665542222111111116899999998752 356999999852 3
Q ss_pred CcceEeccc----eeEEEcCCCCEEEEeecC---------------CCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1587 GPMHSFEGC----KAARFSNSGNLFAALPTE---------------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1587 k~l~tf~gh----~sVaFSPDG~~LaSgS~~---------------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
+.+..|..| +.+.|.+||+.++.+..+ +..-.+.+.|..+|+.+.+..-+ ...+..+.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp---~~l~~lSi 228 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP---ASLRQLSI 228 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc---hhhhhcce
Confidence 345556544 789999999998887221 01223455565566655443211 00011222
Q ss_pred eEEEEcCCCCeEeecc----------EEEEcCCCcceeeecc-------CCCce-EEEEecCCCEEEEEe------EEEe
Q 000177 1648 SQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQ-------FTDHG-GGGFHPAGNEVIINS------EVWD 1703 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~g-------h~~~V-sVaFSPdG~~LASGS------eIWD 1703 (1922)
.-+...++|..++.+- .+=-.+.++++.-++. ..+.+ +++.+-+..+++..+ -+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 2377788887766443 1222234455444432 23445 666665555555555 2999
Q ss_pred cCCCeEEEEEcCCCceeE
Q 000177 1704 LRKFRLLRSVPSLDQTTI 1721 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~~sV 1721 (1922)
..||.++....-.+...|
T Consensus 309 a~tG~vv~~a~l~daaGv 326 (366)
T COG3490 309 AATGAVVSEAALPDAAGV 326 (366)
T ss_pred cCCCcEEecccccccccc
Confidence 999998876553333333
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.23 E-value=5.6 Score=46.96 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=90.4
Q ss_pred CCCEEEEEeCCCcEEEEECC-CCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcce--------
Q 000177 1520 DSSHIAVGSHTKELKIFDSN-SSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH-------- 1590 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~-tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~-------- 1590 (1922)
.++.|+.|+.+| |.++++. ......... ...|..+ ...++-+.|+.=+|+.+.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql--~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQL--SVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEE--EEecccCEEEEEcCCccEEEEchhhcccccccccccccc
Confidence 578999999999 8999983 333333332 3348888 6677777888767799999998762111100
Q ss_pred -----Eeccc-eeEEEc----CC-CCEEEEeecCCCCCeEEEEECCCC-----ceeeeeccccccccCCCCcceEEEEcC
Q 000177 1591 -----SFEGC-KAARFS----NS-GNLFAALPTETSDRGILLYDIQTY-----QLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1591 -----tf~gh-~sVaFS----PD-G~~LaSgS~~S~DgtIrIWDlrTg-----k~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
.+... .+..|. .. ..+++.+ ..++|.+|..... +..+.+. .......++|.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va----~kk~i~i~~~~~~~~~f~~~~ke~~--------lp~~~~~i~~~- 147 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA----VKKKILIYEWNDPRNSFSKLLKEIS--------LPDPPSSIAFL- 147 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE----ECCEEEEEEEECCcccccceeEEEE--------cCCCcEEEEEe-
Confidence 11111 122233 22 3344443 3458999888753 2333333 12333447777
Q ss_pred CCCeEeec-c---EEEEcCCCcceeeeccCC------------CceEEEEecCCCEEEEEeE
Q 000177 1655 SDTMLLWN-G---ILWDRRNSVPVHRFDQFT------------DHGGGGFHPAGNEVIINSE 1700 (1922)
Q Consensus 1655 dG~lLaSg-g---rLWDlrtgk~I~kf~gh~------------~~VsVaFSPdG~~LASGSe 1700 (1922)
++.++.+ . .+.|+.++....-+.... ..+.+.--+++.+|++..+
T Consensus 148 -~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~ 208 (275)
T PF00780_consen 148 -GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDN 208 (275)
T ss_pred -CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecc
Confidence 3344433 2 788988776543332111 1234444555677776553
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=3.7 Score=51.43 Aligned_cols=107 Identities=13% Similarity=0.090 Sum_probs=70.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCC--C--------Cee-EEEeeecCCCcEEEEecCCcEEEeccCCCCCCc
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQ--A--------PVT-LVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHs--s--------~Vt-sLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~ 1588 (1922)
.+..|++++.+|.|.-+|..+|+.+-...-.. . .+. .+ .. .++++++.+.++.+.-+|..+ ++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~v-~~~~v~v~~~~g~l~ald~~t--G~~ 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGV--TV-AGGKVYIGSEKGQVYALNAED--GEV 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCccccccccccccccccc--EE-ECCEEEEEcCCCEEEEEECCC--CCC
Confidence 36688888888999999999998775543211 0 000 01 11 145666667789999999988 777
Q ss_pred ceEeccceeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1589 MHSFEGCKAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1589 l~tf~gh~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
+.++.....+.-+| .+..++.+ ..++.+..+|..+|+.+..+.
T Consensus 143 ~W~~~~~~~~~ssP~v~~~~v~v~---~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 143 AWQTKVAGEALSRPVVSDGLVLVH---TSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cccccCCCceecCCEEECCEEEEE---CCCCEEEEEEccCCCEeeeec
Confidence 76664322111122 24455555 668899999999999988775
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.033 Score=44.85 Aligned_cols=31 Identities=42% Similarity=0.375 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHhcCchHHHHHHHHHcCC
Q 000177 1167 HSRELLLLIHEHLQASGLVTTAAQLLKEAQL 1197 (1922)
Q Consensus 1167 ~e~ELL~LI~~HL~~~GL~~TA~~L~kEA~L 1197 (1922)
..++|.+||.+||...|+.+||.+|.+|+++
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 3578999999999999999999999999998
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.11 E-value=4.7 Score=50.71 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEE-ec-----------C
Q 000177 1512 LTCITFLGDSSHIAVG-SHTK----ELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLS-SS-----------S 1573 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASG-S~DG----tIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaS-Ss-----------D 1573 (1922)
+....+||||++|+.+ +..| +|+|+|+.+|+.+... .. .. -..+ .|.++++.|+. .. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~-~~~~--~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK-FSSV--SWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE-SEEE--EECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc-cceE--EEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467899999988765 4444 5999999999765432 21 11 1226 78999877655 32 2
Q ss_pred CcEEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCC
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSD-RGILLYDIQTY 1627 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTg 1627 (1922)
..|+.|.+.+....-...|.+ ...+..++++++++..+..+.+ ..+.+.|+..+
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 237888887622221233432 2367889999988766555555 77888898875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.9 Score=53.10 Aligned_cols=235 Identities=15% Similarity=0.215 Sum_probs=125.7
Q ss_pred EEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeee--c-cCCCC----eeEEEeeecCCCcEEEEe--c-
Q 000177 1513 TCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESC--T-SHQAP----VTLVQSHLSGETQLLLSS--S- 1572 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL--~-gHss~----VtsLq~afSpDG~lLaSS--s- 1572 (1922)
-.+..+||++.+++.+ .+-.|.+||..+-.....+ . .|... .+.+ .++.|+++++.. +
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~--~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMF--ALSADGKFLYVQNFTP 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGE--EE-TTSSEEEEEEESS
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccce--EEccCCcEEEEEccCC
Confidence 4467899999888743 4556999999988766533 2 21211 1223 568899988774 2
Q ss_pred CCcEEEeccCCCCCCcceEeccceeEEEcCC-CCEEEEeecCCCCCeEEEEECC-CCceeeeeccccccccCCCCcceEE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGCKAARFSNS-GNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
-..|.|-|+.. .+.+..+.---|.-.-|. .+.|.+- +.||++..+.+. .|+...+... .... -...-...-
T Consensus 117 a~SVtVVDl~~--~kvv~ei~~PGC~~iyP~~~~~F~~l---C~DGsl~~v~Ld~~Gk~~~~~t~-~F~~-~~dp~f~~~ 189 (342)
T PF06433_consen 117 ATSVTVVDLAA--KKVVGEIDTPGCWLIYPSGNRGFSML---CGDGSLLTVTLDADGKEAQKSTK-VFDP-DDDPLFEHP 189 (342)
T ss_dssp SEEEEEEETTT--TEEEEEEEGTSEEEEEEEETTEEEEE---ETTSCEEEEEETSTSSEEEEEEE-ESST-TTS-B-S--
T ss_pred CCeEEEEECCC--CceeeeecCCCEEEEEecCCCceEEE---ecCCceEEEEECCCCCEeEeecc-ccCC-CCccccccc
Confidence 66789999987 666665543233333342 2345555 568888888887 4555433221 0000 000000112
Q ss_pred EEcCCC-CeEe-e-ccEEEEcC--CCc--ceeeeccC------CCce-----EEEEecCCCEEEEEe-------------
Q 000177 1651 HFSPSD-TMLL-W-NGILWDRR--NSV--PVHRFDQF------TDHG-----GGGFHPAGNEVIINS------------- 1699 (1922)
Q Consensus 1651 aFSPdG-~lLa-S-ggrLWDlr--tgk--~I~kf~gh------~~~V-----sVaFSPdG~~LASGS------------- 1699 (1922)
.+...+ .+++ | .|.+|.+. ... ....+.-. .+|. -+++|+..+.|.+--
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 333333 3332 2 22555433 111 12222211 1222 578887655544432
Q ss_pred EEE--ecCCCeEEEEEc-CCCceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1700 EVW--DLRKFRLLRSVP-SLDQTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1700 eIW--DLrTgklL~tl~-gH~~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
+|| |+.+++.+.+++ .+...+|..+.+.+ .|++... ....+.++|+.+.+.+.+++.
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~------------------~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA------------------GDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET------------------TTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC------------------CCCeEEEEeCcCCcEEeehhc
Confidence 355 888999999998 44557899998776 6666532 124577888888877776653
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.7 Score=53.49 Aligned_cols=197 Identities=12% Similarity=0.120 Sum_probs=114.4
Q ss_pred EEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcce
Q 000177 1513 TCITFLGDSSHIAVGSH--TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~--DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~ 1590 (1922)
+..++|.||++++.... -.+|-|-|+..++.+..+. ...+..+ ..+++..+..-|.||++.-..+.. .|+...
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PGC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~-~Gk~~~ 172 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPGCWLI--YPSGNRGFSMLCGDGSLLTVTLDA-DGKEAQ 172 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTSEEEE--EEEETTEEEEEETTSCEEEEEETS-TSSEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCCEEEE--EecCCCceEEEecCCceEEEEECC-CCCEeE
Confidence 34678899998877654 4578999999888887775 3445555 445555666669999998888875 255543
Q ss_pred Eeccc---------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc------eEEEEcCC
Q 000177 1591 SFEGC---------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY------SQIHFSPS 1655 (1922)
Q Consensus 1591 tf~gh---------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~------~vVaFSPd 1655 (1922)
+.... ..-++...+..++.. +..|.|+--|+........-+ -.+......... ..+++++.
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~---Sy~G~v~~~dlsg~~~~~~~~-~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFV---SYEGNVYSADLSGDSAKFGKP-WSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEE---BTTSEEEEEEETTSSEEEEEE-EESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred eeccccCCCCcccccccceECCCCeEEEE---ecCCEEEEEeccCCcccccCc-ccccCccccccCcCCcceeeeeeccc
Confidence 32211 122333344444444 677888888887554222111 000000000011 12888865
Q ss_pred CCeEee-c---c-----------EEEEcCCCcceeeeccCCCceEEEEecCCC-EEEEEe------EEEecCCCeEEEEE
Q 000177 1656 DTMLLW-N---G-----------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGN-EVIINS------EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1656 G~lLaS-g---g-----------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~-~LASGS------eIWDLrTgklL~tl 1713 (1922)
.+.|.. - . -+||+.+++.+.++.......++..+.+.+ .|+..+ .+||..+|++++++
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 544331 1 1 567888999999997543333888888876 444332 48999999999999
Q ss_pred cCCCc
Q 000177 1714 PSLDQ 1718 (1922)
Q Consensus 1714 ~gH~~ 1718 (1922)
.....
T Consensus 329 ~~lG~ 333 (342)
T PF06433_consen 329 EQLGE 333 (342)
T ss_dssp ---SS
T ss_pred hccCC
Confidence 85443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.05 Score=63.41 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=60.1
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE-EEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcC-C
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL-LLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSN-S 1603 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l-LaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-D 1603 (1922)
+..++|+++..+.+..-.--...|+++ +-+|..+. +++| .||.+-|||++.. ..+...++.| +-+-||| +
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l--~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTAL--CSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeecccccccccccccccccchhh--hCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCC
Confidence 456677776544332222223348888 56665544 4444 5999999999873 2333344443 7799999 6
Q ss_pred CCEEEEeecCCCCCeEEEEECCC
Q 000177 1604 GNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
+..|+++ +.||.+..||..+
T Consensus 236 p~~Lft~---sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTC---SEDGSLWHWDAST 255 (319)
T ss_pred chheeEe---cCCCcEEEEcCCC
Confidence 7889998 8999999999875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=11 Score=47.36 Aligned_cols=211 Identities=14% Similarity=0.179 Sum_probs=126.4
Q ss_pred EEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--ecCCcEEEeccCCCCCCc
Q 000177 1512 LTCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--SSSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--SsDgtVkLWDl~t~~gk~ 1588 (1922)
...+...+++..+.... ....+.+.+............-...-..+ ..++.+..+.. ..+..|.+.|..+ ...
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i--~v~~~~~~vyv~~~~~~~v~vid~~~--~~~ 108 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGV--AVNPAGNKVYVTTGDSNTVSVIDTAT--NTV 108 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccce--eeCCCCCeEEEecCCCCeEEEEcCcc--cce
Confidence 34567778775443332 22245555544211111111111222344 56677764443 3478999999766 444
Q ss_pred ceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ecc-
Q 000177 1589 MHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG- 1663 (1922)
Q Consensus 1589 l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg- 1663 (1922)
.+... .-..++|+|+++.+..+..+..++++.+.|..+.+.+.+.. .+....-++++|+|+.+. +..
T Consensus 109 ~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~--------vG~~P~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 109 LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP--------VGNTPTGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe--------cCCCcceEEECCCCCeEEEEecC
Confidence 44332 23779999999888777322247899999999999888754 122224599999999555 332
Q ss_pred ----EEEEcCCCccee-----eeccCCCceEEEEecCCCEEEEEe------E--EEecCCCeEEEE-EcCC--CceeEEE
Q 000177 1664 ----ILWDRRNSVPVH-----RFDQFTDHGGGGFHPAGNEVIINS------E--VWDLRKFRLLRS-VPSL--DQTTITF 1723 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~-----kf~gh~~~VsVaFSPdG~~LASGS------e--IWDLrTgklL~t-l~gH--~~~sVaF 1723 (1922)
.+.|.......+ .+..+..+..+.+.|+|.++.... . +.|..++..... +... ....+.+
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~ 260 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAV 260 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeE
Confidence 677755544432 123333444789999999665544 1 456666666654 2222 2367999
Q ss_pred ccCCCEEEEEE
Q 000177 1724 NARGDVIYAIL 1734 (1922)
Q Consensus 1724 SPdG~~LaSgs 1734 (1922)
+|+|.+++...
T Consensus 261 ~p~g~~~yv~~ 271 (381)
T COG3391 261 DPAGKAAYVAN 271 (381)
T ss_pred CCCCCEEEEEe
Confidence 99999999884
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.5 Score=54.95 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=107.3
Q ss_pred EEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe--cCCcEEEeccCCCCC
Q 000177 1512 LTCITFLGDSSHIAVGSH---TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS--SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~---DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS--sDgtVkLWDl~t~~g 1586 (1922)
...++|+++++.+..+.. +++|.+.|..+++...+...-..+ ..+ .++|+|..+... .++.|.+.|... .
T Consensus 118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~--a~~p~g~~vyv~~~~~~~v~vi~~~~--~ 192 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV--AVDPDGNKVYVTNSDDNTVSVIDTSG--N 192 (381)
T ss_pred CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE--EECCCCCeEEEEecCCCeEEEEeCCC--c
Confidence 457899999988877766 688999998888887776433344 667 889999966664 589999999875 2
Q ss_pred Ccc--------eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee-eccccccccCCCCcceEEEEcCCCC
Q 000177 1587 GPM--------HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK-LSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1587 k~l--------~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t-L~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
... ..+.....+.+.|+|.++......+.++.+...|..++..... +. ...+ ....+.++|+|.
T Consensus 193 ~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 193 SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-APRGVAVDPAGK 265 (381)
T ss_pred ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-CCCceeECCCCC
Confidence 222 2223347899999999777764444457999999998877665 22 0112 233388999998
Q ss_pred eEeec----c--EEEEcCCCcceeeecc
Q 000177 1658 MLLWN----G--ILWDRRNSVPVHRFDQ 1679 (1922)
Q Consensus 1658 lLaSg----g--rLWDlrtgk~I~kf~g 1679 (1922)
.+... + .+-|..+.+....+..
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 87755 2 5556555555554443
|
|
| >PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.042 Score=74.99 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhh
Q 000177 1422 LDSLVVQYLKHQHRQ 1436 (1922)
Q Consensus 1422 LdsIVtqyLr~QH~q 1436 (1922)
=+.++..|.+++.++
T Consensus 85 Eekml~Rf~~Er~~~ 99 (840)
T PF04147_consen 85 EEKMLERFTRERQRQ 99 (840)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555665555443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.36 E-value=3 Score=50.01 Aligned_cols=189 Identities=12% Similarity=0.171 Sum_probs=104.2
Q ss_pred eeeEEecCCCCCCE-EEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEEecCC
Q 000177 1499 RPWRTCRDDAGALL-TCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1499 rpirtLrgH~d~~V-t~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaSSsDg 1574 (1922)
+.+.++. |....+ ..+.|..+|.++-+.+.-| .|+.+|+.+++......- ....--.| ....|.-+.+|=.++
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGi--t~~~d~l~qLTWk~~ 110 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGI--TILGDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEE--EEETTEEEEEESSSS
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeE--EEECCEEEEEEecCC
Confidence 4455554 332444 4678878888888888777 799999999987755421 12222233 333343334444588
Q ss_pred cEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc---ce
Q 000177 1575 DVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA---YS 1648 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~---~~ 1648 (1922)
...+||..+ .+.+.+|.- -+.++ .+++.|+.. .....++++|..+.+...++.... .+.+ .+
T Consensus 111 ~~f~yd~~t--l~~~~~~~y~~EGWGLt--~dg~~Li~S---DGS~~L~~~dP~~f~~~~~i~V~~-----~g~pv~~LN 178 (264)
T PF05096_consen 111 TGFVYDPNT--LKKIGTFPYPGEGWGLT--SDGKRLIMS---DGSSRLYFLDPETFKEVRTIQVTD-----NGRPVSNLN 178 (264)
T ss_dssp EEEEEETTT--TEEEEEEE-SSS--EEE--ECSSCEEEE----SSSEEEEE-TTT-SEEEEEE-EE-----TTEE---EE
T ss_pred eEEEEcccc--ceEEEEEecCCcceEEE--cCCCEEEEE---CCccceEEECCcccceEEEEEEEE-----CCEECCCcE
Confidence 999999987 566666542 26666 456666665 345779999999888777765211 1111 11
Q ss_pred EEEEcCCCCeEeec--c---EEEEcCCCcceeeecc----------C----CCce--EEEEecCCCEEEEEeEEEe
Q 000177 1649 QIHFSPSDTMLLWN--G---ILWDRRNSVPVHRFDQ----------F----TDHG--GGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1649 vVaFSPdG~lLaSg--g---rLWDlrtgk~I~kf~g----------h----~~~V--sVaFSPdG~~LASGSeIWD 1703 (1922)
-+.|- +|.+.+.. . ...|..+|+.+..++- . ...| .++|.|....+...+|.|.
T Consensus 179 ELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 179 ELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred eEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence 14443 44444411 1 5566677766554421 0 1233 7888888777777776554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.71 Score=59.08 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=83.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEe-ccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLW-NASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLW-Dl~t~~gk~ 1588 (1922)
-....+.++|+|+++++ ..||.-.|+.......... +.-... .|.+.+++.+--..++|+|+ ++.. ..
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~--vw~~~n~yAv~~~~~~I~I~kn~~~---~~ 101 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSF--VWSSRNRYAVLESSSTIKIYKNFKN---EV 101 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEE--EE-TSSEEEEE-TTS-EEEEETTEE----T
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEE--EEecCccEEEEECCCeEEEEEcCcc---cc
Confidence 45678999999999988 6677788887433322221 122233 67887777776678889995 5543 22
Q ss_pred ceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----
Q 000177 1589 MHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---- 1663 (1922)
Q Consensus 1589 l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---- 1663 (1922)
..+++-. ..-...+ |..|... .++.|.+||+.+++.+..+. -..+..+.|+++|++++-.+
T Consensus 102 ~k~i~~~~~~~~If~-G~LL~~~----~~~~i~~yDw~~~~~i~~i~---------v~~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG-GNLLGVK----SSDFICFYDWETGKLIRRID---------VSAVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp T-----SS-EEEEE--SSSEEEE----ETTEEEEE-TTT--EEEEES---------S-E-EEEEE-TTSSEEEEE-S-SE
T ss_pred ceEEcCCcccceEEc-CcEEEEE----CCCCEEEEEhhHcceeeEEe---------cCCCcEEEEECCCCEEEEEeCCeE
Confidence 2233222 1111222 7777765 23479999999999999986 12235699999999998555
Q ss_pred EEEEcCCC-----------cceeeeccCCCce-EEEEecC
Q 000177 1664 ILWDRRNS-----------VPVHRFDQFTDHG-GGGFHPA 1691 (1922)
Q Consensus 1664 rLWDlrtg-----------k~I~kf~gh~~~V-sVaFSPd 1691 (1922)
.+++.... ..+..+......| +.+|.-+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 56554322 0222332223344 7888776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=6.6 Score=49.26 Aligned_cols=106 Identities=8% Similarity=-0.011 Sum_probs=69.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc-eeE
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC-KAA 1598 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh-~sV 1598 (1922)
++..|+.++.+|.+.-+|..+|+.+-+..... .+.+- +.. .++.+++...++.+.-+|..+ ++.+.++... ..+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ss-P~v-~~~~v~v~~~~g~l~ald~~t--G~~~W~~~~~~~~~ 193 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSR-PVV-SDGLVLVHTSNGMLQALNESD--GAVKWTVNLDVPSL 193 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecC-CEE-ECCEEEEECCCCEEEEEEccC--CCEeeeecCCCCcc
Confidence 35678889999999999999999877665332 22211 011 256666666788999999988 7777666431 100
Q ss_pred ----EEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1599 ----RFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1599 ----aFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
.-+| .+..++.+ +.++.+..+|..+|+.+...
T Consensus 194 ~~~~~~sP~v~~~~v~~~---~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 194 TLRGESAPATAFGGAIVG---GDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cccCCCCCEEECCEEEEE---cCCCEEEEEEccCChhhhee
Confidence 1122 13345555 66788999999999876654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=10 Score=47.72 Aligned_cols=240 Identities=12% Similarity=0.054 Sum_probs=111.0
Q ss_pred ccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc
Q 000177 1487 NRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1487 ~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~ 1566 (1922)
.+....+.+..+...+ |+.+.........++|+++.|+--.....|+-.|+.+.+....+.-....+-...|..+.|+.
T Consensus 59 ~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp S-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred CcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 3333333344444333 554331222245667888888766666789999999988776666666666556455566777
Q ss_pred EEEEe----cCC-------------------cEEEeccCCCCCCcceEecc---ceeEEEcC-CCCEEEEeecCCCCCe-
Q 000177 1567 LLLSS----SSQ-------------------DVHLWNASSIAGGPMHSFEG---CKAARFSN-SGNLFAALPTETSDRG- 1618 (1922)
Q Consensus 1567 lLaSS----sDg-------------------tVkLWDl~t~~gk~l~tf~g---h~sVaFSP-DG~~LaSgS~~S~Dgt- 1618 (1922)
.++.. .|. .|.-.|+.+ ++....+.. ...+.|+| +...|+.|-.+..|..
T Consensus 138 ~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd 215 (386)
T PF14583_consen 138 KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVD 215 (386)
T ss_dssp EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS
T ss_pred EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEecCccccCcccCCCCCCEEEEeccCCcceec
Confidence 77653 122 133334444 443333332 25689999 5677777755555553
Q ss_pred EEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeeccCCCceEEE
Q 000177 1619 ILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQFTDHGGGG 1687 (1922)
Q Consensus 1619 IrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~gh~~~VsVa 1687 (1922)
-+||-+++ +.....+... . .+-...-=-|.|+|..|...+ .-+|+.+++...... ....+-..
T Consensus 216 ~RiW~i~~dg~~~~~v~~~-~----~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p~~~H~~ 289 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRR-M----EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MPWCSHFM 289 (386)
T ss_dssp -SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-E-SEEEEE
T ss_pred eEEEEEEcCCCcceeeecC-C----CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-CCceeeeE
Confidence 36776653 3333333200 0 111111146899998777443 345566664422111 11122445
Q ss_pred EecCCCEEEEEe---------------------EEEecCCCeEEE---------EEcCCCc---eeEEEccCCCEEEEEE
Q 000177 1688 FHPAGNEVIINS---------------------EVWDLRKFRLLR---------SVPSLDQ---TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1688 FSPdG~~LASGS---------------------eIWDLrTgklL~---------tl~gH~~---~sVaFSPdG~~LaSgs 1734 (1922)
-+++|++++.-+ .++++.+++... .+.++.+ ..+.|+|||++|+-.+
T Consensus 290 ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 290 SSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp E-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE
T ss_pred EcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEEC
Confidence 567888776533 035666554321 1122222 4789999999888764
Q ss_pred c
Q 000177 1735 R 1735 (1922)
Q Consensus 1735 ~ 1735 (1922)
.
T Consensus 370 d 370 (386)
T PF14583_consen 370 D 370 (386)
T ss_dssp -
T ss_pred C
Confidence 3
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.13 Score=39.09 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=31.1
Q ss_pred CCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1541 SSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1541 gk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
+++...+..|...|+++ .|++++.+++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSV--AFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEE--EECCCCCEEEEecCCCeEEEcC
Confidence 34566778899999999 778888888885 599999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.053 Score=71.75 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=42.9
Q ss_pred HHHHHHHhCccccHHHHHHHHhhcchHHHHHHHhccCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCcccccccccCc
Q 000177 1069 ALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATP 1148 (1922)
Q Consensus 1069 aLAcraL~GLaR~~~vrqIlskLpl~~~lq~Lmr~p~lq~~~~e~~~f~~~f~~~A~eLie~vt~sGk~~~~~a~da~~~ 1148 (1922)
++||+-|.-|--+-+|.. |-+ -.+|.=|++- .-||.-|-|--..|+..|- +- -.|+..-
T Consensus 885 a~ac~p~fNllAnce~kk---k~a-----g~il~ipgvd------rpwhshfikdgqsLMQ~iL---~C----Dad~~~Q 943 (3015)
T KOG0943|consen 885 AMACHPLFNLLANCEIKK---KAA-----GIILAIPGVD------RPWHSHFIKDGQSLMQHIL---RC----DADACRQ 943 (3015)
T ss_pred hhhhchhhcccccccccc---cce-----eEEEEecCCC------CcchhhhccchHHHHHHHH---hc----CHHHHHH
Confidence 889999988533333321 111 0123333332 2366666667777777772 11 1333334
Q ss_pred hHHHHHHHhhhhccccccChHHHHHHHHHHHHh
Q 000177 1149 TLRRIERAAIAAATPISYHSRELLLLIHEHLQA 1181 (1922)
Q Consensus 1149 sL~~i~RA~IvA~T~I~y~e~ELL~LI~~HL~~ 1181 (1922)
-|-+++.|-+ .-.|+-+| .-|.|-|.|.+
T Consensus 944 fLd~L~e~rm--sctishhE--f~~iM~eqffs 972 (3015)
T KOG0943|consen 944 FLDNLEEARM--SCTISHHE--FNLIMLEQFFS 972 (3015)
T ss_pred HHHHHHHHHh--hhhhhhHH--HHHHHHHHHHH
Confidence 5667776644 23344443 33444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.8 Score=60.27 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCC
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASS 1583 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t 1583 (1922)
+++++|+|..-.|+.|-.-|.+.+|..++.+.-.....|..+|..+ .||++|..++|++ -|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l--~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGL--DWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeE--EecCCCCeEEEcCCCceeEEEEeee
Confidence 4679999998899999999999999987776655567899999999 7899999999976 78999998864
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.035 Score=70.84 Aligned_cols=169 Identities=17% Similarity=0.309 Sum_probs=107.8
Q ss_pred CCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCCc--eeeeccCCCCeeEEEeeecC-CCcEEEEe-----cCCcEEEe
Q 000177 1510 ALLTCITFLGDS--SHIAVGSHTKELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSG-ETQLLLSS-----SSQDVHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG--~lLASGS~DGtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSp-DG~lLaSS-----sDgtVkLW 1579 (1922)
..+.|++++.+. -+++.|..+|.|-+-.+....- .....+|..+.+++ +|++ |..+|+.| .|..+.||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~l--AwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSL--AWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccc--ccccccHHHHHhhhhhhcccCCccce
Confidence 346788776643 4789999999999988754332 23457888999999 5665 56677776 26679999
Q ss_pred ccCCCCCCcce-------EeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCcceEEE
Q 000177 1580 NASSIAGGPMH-------SFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1580 Dl~t~~gk~l~-------tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|+.+.-..|.. ++.+..+++|-.+.+.+++| ...+.++++|++... ....+. .....-++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaG---m~sr~~~ifdlRqs~~~~~svn---------Tk~vqG~t 202 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAG---MTSRSVHIFDLRQSLDSVSSVN---------TKYVQGIT 202 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcc---cccchhhhhhhhhhhhhhhhhh---------hhhcccce
Confidence 99872112221 23345789999888888887 666789999998321 111111 01111266
Q ss_pred EcC-CCCeEeecc----EEEE-cCCC-cceeeeccCCC-----ceEEEEecCC
Q 000177 1652 FSP-SDTMLLWNG----ILWD-RRNS-VPVHRFDQFTD-----HGGGGFHPAG 1692 (1922)
Q Consensus 1652 FSP-dG~lLaSgg----rLWD-lrtg-k~I~kf~gh~~-----~VsVaFSPdG 1692 (1922)
++| .+.++++.. .+|| .++- .++..+....+ ...++|+|..
T Consensus 203 Vdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 203 VDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred ecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 777 667777554 8999 4432 34433332222 2278999864
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.87 Score=61.56 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=85.4
Q ss_pred EEeCCCcEEEEECCCCCceeeeccCCCC-eeEEEee--ec--CCCcEEEEecCCcEEEeccCCCCCCcce----Eecc--
Q 000177 1526 VGSHTKELKIFDSNSSSPLESCTSHQAP-VTLVQSH--LS--GETQLLLSSSSQDVHLWNASSIAGGPMH----SFEG-- 1594 (1922)
Q Consensus 1526 SGS~DGtIkIWDl~tgk~l~tL~gHss~-VtsLq~a--fS--pDG~lLaSSsDgtVkLWDl~t~~gk~l~----tf~g-- 1594 (1922)
.......|+-.|++.|+.+..+..|... |..+... |. .+.+.++.=+++.+..||.+....+++. .+..
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3345678999999999999999888755 7777221 11 1234455557888999999863222221 1111
Q ss_pred -ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEc
Q 000177 1595 -CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDR 1668 (1922)
Q Consensus 1595 -h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDl 1668 (1922)
..|++-..+|. ||.| +.+|.||+||- .|+..++.- ++.|.++..+..+.||+||+..+ .|++.
T Consensus 579 ~Fs~~aTt~~G~-iavg---s~~G~IRLyd~-~g~~AKT~l------p~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDGY-IAVG---SNKGDIRLYDR-LGKRAKTAL------PGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CceEEEecCCce-EEEE---eCCCcEEeecc-cchhhhhcC------CCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 25566565665 6677 88999999994 444333332 23466666699999999998665 55554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.2 Score=55.60 Aligned_cols=172 Identities=15% Similarity=0.215 Sum_probs=105.7
Q ss_pred ecCceeeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC------Ccee--eecc-----CCCCee
Q 000177 1495 YSRFRPWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKE-----LKIFDSNSS------SPLE--SCTS-----HQAPVT 1555 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGt-----IkIWDl~tg------k~l~--tL~g-----Hss~Vt 1555 (1922)
.+.++.++.|+.|. .. |..+....+..+|++-+.|+. |+||+++.- .++. .+.. ...++.
T Consensus 51 n~s~~~~~~fqa~~-~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s 129 (933)
T KOG2114|consen 51 NSSFQLIRGFQAYE-QSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPAS 129 (933)
T ss_pred cccceeeehheecc-hhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcce
Confidence 45666668888877 44 555555545578888777654 899998642 2331 2222 245677
Q ss_pred EEEeeecCCCcEEEEe-cCCcEEEeccCCC--CCC-cceEec---cceeEEEcCCCCE--EEEeecCCCCCeEEEEECCC
Q 000177 1556 LVQSHLSGETQLLLSS-SSQDVHLWNASSI--AGG-PMHSFE---GCKAARFSNSGNL--FAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1556 sLq~afSpDG~lLaSS-sDgtVkLWDl~t~--~gk-~l~tf~---gh~sVaFSPDG~~--LaSgS~~S~DgtIrIWDlrT 1626 (1922)
++ +.+.+-+.++.| .+|.|..+.-.-. .+. ...... .++.+.|..+++. |+++ -..|.+|.+..
T Consensus 130 ~l--~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-----t~~V~~y~l~g 202 (933)
T KOG2114|consen 130 SL--AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-----TEQVMLYSLSG 202 (933)
T ss_pred EE--EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-----cceeEEEEecC
Confidence 88 778888888888 5898888743220 011 111111 2588899888876 4443 25699999984
Q ss_pred Cce-eeeeccccccccCCCCcceEEEEcCCCC-eEeecc---EEEEcCCCcceeeec-cCC
Q 000177 1627 YQL-EAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWNG---ILWDRRNSVPVHRFD-QFT 1681 (1922)
Q Consensus 1627 gk~-i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSgg---rLWDlrtgk~I~kf~-gh~ 1681 (1922)
..+ ..++. .+|-..++.+|++... ++++++ .+||....++-..|. ++.
T Consensus 203 r~p~~~~ld-------~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 203 RTPSLKVLD-------NNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred CCcceeeec-------cCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence 331 22232 2466667778887665 555555 788877655666665 444
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.28 Score=63.11 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=67.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCee-EEEeeecCCCcEEEEe-cCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVT-LVQSHLSGETQLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vt-sLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
..|..+.|+|.-.+||++..+|.|.+.-++ .+.+.++.-|...|+ ++ +|.|||++|+.| .||+|+|.|+.+ +.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL--~W~~DGkllaVg~kdG~I~L~Dve~--~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASL--CWRPDGKLLAVGFKDGTIRLHDVEK--GG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceee--eecCCCCEEEEEecCCeEEEEEccC--CC
Confidence 468899999999999999999999999987 777788887888888 88 889999999998 599999999998 55
Q ss_pred cceE
Q 000177 1588 PMHS 1591 (1922)
Q Consensus 1588 ~l~t 1591 (1922)
.+..
T Consensus 96 ~l~~ 99 (665)
T KOG4640|consen 96 RLVS 99 (665)
T ss_pred ceec
Confidence 4544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=92.33 E-value=4.3 Score=55.26 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=85.6
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCC-Cceeeec----cCCCCeeEEEee
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLG-----DSSHIAVGSHTKELKIFDSNSS-SPLESCT----SHQAPVTLVQSH 1560 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSP-----DG~lLASGS~DGtIkIWDl~tg-k~l~tL~----gHss~VtsLq~a 1560 (1922)
.++...+++.+....-|.+.+|..++=.. +..-.+.|-.+..+..||..-. ..+..-. .......|+ +
T Consensus 507 y~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~--a 584 (794)
T PF08553_consen 507 YKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF--A 584 (794)
T ss_pred EEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE--E
Confidence 34556777878877777644455543211 2345688999999999998643 2222111 223455666 7
Q ss_pred ecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1561 LSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1561 fSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
-+.+|.+++++.+|.|+|||--. .+....|.+ +.+|..+.||++++++ .+..+.++|..
T Consensus 585 Tt~~G~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DGkwilaT----c~tyLlLi~t~ 647 (794)
T PF08553_consen 585 TTEDGYIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADGKWILAT----CKTYLLLIDTL 647 (794)
T ss_pred ecCCceEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCCcEEEEe----ecceEEEEEEe
Confidence 78899999889999999999532 233344444 5889999999998874 46778888864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.4 Score=56.25 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=84.7
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc--------EEEEecCCcEEEeccCCCCCC-cc
Q 000177 1520 DSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ--------LLLSSSSQDVHLWNASSIAGG-PM 1589 (1922)
Q Consensus 1520 DG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~--------lLaSSsDgtVkLWDl~t~~gk-~l 1589 (1922)
+.+ +|.+|.....|+-.|++.|+.+..++-|.. |+-+ .+.|+.+ .|+.=+|..|.-||.+-. +. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv--~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~-~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMV--DITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ-GKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-ccee--eccCCcchhcccccccEEeecCCceEEeccccc-Cccee
Confidence 444 445666777888899999999999988877 5555 4455543 233336889999999852 22 12
Q ss_pred eEeccc--------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEee
Q 000177 1590 HSFEGC--------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1590 ~tf~gh--------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
..-+++ .|.+-..+| +|+.| +.+|.|++||- .+...++.- ++.|..+.-+..+.+|++|+.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~Ivvg---S~~GdIRLYdr-i~~~AKTAl------PgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVG---SLKGDIRLYDR-IGRRAKTAL------PGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEe---ecCCcEEeehh-hhhhhhhcc------cccCCceeeEEeeccCcEEEE
Confidence 122222 333333344 56777 88899999997 555555443 334666666999999999885
Q ss_pred cc
Q 000177 1662 NG 1663 (1922)
Q Consensus 1662 gg 1663 (1922)
.+
T Consensus 489 Tc 490 (644)
T KOG2395|consen 489 TC 490 (644)
T ss_pred ec
Confidence 55
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=92.23 E-value=14 Score=47.09 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=46.7
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccC
Q 000177 1515 ITFLGDSSHIAVGSHT----------K-ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1515 LaFSPDG~lLASGS~D----------G-tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~ 1582 (1922)
++.+|.|..||.-..+ . .|+||+. .|+.+.++.=-.+.|.++ .|+.+..+++...||+++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~--~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGM--GWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEE--EECCCCeEEEEEcCCEEEEEeCC
Confidence 3445555555554433 2 4899986 577776653223788888 77888889988999999999996
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.22 E-value=13 Score=44.42 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=72.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc----
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC---- 1595 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh---- 1595 (1922)
..+++.||..+.++--|..+|+....-.. ...|.+-... -|.+++. +..+.+.+.++++ +...+.|...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~t--Gs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV---VGDFVVLGCYSGGLYFLCVKT--GSQIWNFVILETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE---ECCEEEEEEccCcEEEEEecc--hhheeeeeehhhhc
Confidence 45788899999888888888876532210 1122222101 2334544 6799999999998 7666666432
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
......+++..|..| +.|++.+..|.++..++.+.+
T Consensus 97 ~~a~~d~~~glIycg---shd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCG---SHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred cceEEcCCCceEEEe---cCCCcEEEecccccceEEecc
Confidence 334566788999998 899999999999999988765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.04 E-value=10 Score=46.65 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--EEEEcCCCcc
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--ILWDRRNSVP 1673 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--rLWDlrtgk~ 1673 (1922)
.+..|.++...|+-+ +-..+.|+-||..+++....-. .+.......+...+.++++.. .+++..++..
T Consensus 28 EgP~w~~~~~~L~w~--DI~~~~i~r~~~~~g~~~~~~~--------p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~ 97 (307)
T COG3386 28 EGPVWDPDRGALLWV--DILGGRIHRLDPETGKKRVFPS--------PGGFSSGALIDAGGRLIACEHGVRLLDPDTGGK 97 (307)
T ss_pred cCccCcCCCCEEEEE--eCCCCeEEEecCCcCceEEEEC--------CCCcccceeecCCCeEEEEccccEEEeccCCce
Confidence 345688877755544 3667889999998765432221 123333467777777777655 7888876655
Q ss_pred eeeec----cCCC--ceEEEEecCCCEEEEEe--------------EEEecC-CCeEEEEEcCCCc--eeEEEccCCCEE
Q 000177 1674 VHRFD----QFTD--HGGGGFHPAGNEVIINS--------------EVWDLR-KFRLLRSVPSLDQ--TTITFNARGDVI 1730 (1922)
Q Consensus 1674 I~kf~----gh~~--~VsVaFSPdG~~LASGS--------------eIWDLr-TgklL~tl~gH~~--~sVaFSPdG~~L 1730 (1922)
+..+. +... ...+...|+|.+.++.. .||-+. .++.++.+..+-. +.++|||+|+.+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEE
Confidence 33332 1111 11678888888766533 266666 4566665555322 899999999999
Q ss_pred EEE
Q 000177 1731 YAI 1733 (1922)
Q Consensus 1731 aSg 1733 (1922)
|.+
T Consensus 178 y~a 180 (307)
T COG3386 178 YVA 180 (307)
T ss_pred EEE
Confidence 987
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=91.85 E-value=3.2 Score=43.76 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=46.5
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccC
Q 000177 1512 LTCITFLG---DS-SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1512 Vt~LaFSP---DG-~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~ 1582 (1922)
|+++++.. || +.|++||.|..|+||+- ...+..+.. ++.|+++ .....+++..+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L--~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSL--CSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEE--EEcCCCEEEEEecCCEEEEEeCc
Confidence 56666554 44 48999999999999984 345555543 4678888 55556666666678888887764
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.088 Score=67.37 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=97.0
Q ss_pred EecCCCCCCEEEEEEcC-CCCEEEEEe----CCCcEEEEECCCC--Ccee--eecc-CCCCeeEEEeeecCCCcEEEEec
Q 000177 1503 TCRDDAGALLTCITFLG-DSSHIAVGS----HTKELKIFDSNSS--SPLE--SCTS-HQAPVTLVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSP-DG~lLASGS----~DGtIkIWDl~tg--k~l~--tL~g-Hss~VtsLq~afSpDG~lLaSSs 1572 (1922)
+..+|. ...++++|++ |.++||.|- .|..++|||+.++ .+.. .|.+ -.....++ +|-.+.+++.+|.
T Consensus 97 ~tp~~a-r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~--cwlrd~klvlaGm 173 (783)
T KOG1008|consen 97 VTPGYA-RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSV--CWLRDTKLVLAGM 173 (783)
T ss_pred eccccc-ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccc--ccccCcchhhccc
Confidence 345677 8899999998 677888874 4668999999877 3322 2222 34456678 5668888998875
Q ss_pred -CCcEEEeccCCCCCCcceEe--ccceeEEEcC-CCCEEEEeecCCCCCeEEEEEC-CC-Cceeeeec-cccccccCCCC
Q 000177 1573 -SQDVHLWNASSIAGGPMHSF--EGCKAARFSN-SGNLFAALPTETSDRGILLYDI-QT-YQLEAKLS-DTSVNLTGRGH 1645 (1922)
Q Consensus 1573 -DgtVkLWDl~t~~gk~l~tf--~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDl-rT-gk~i~tL~-d~s~~~~~~gh 1645 (1922)
...++++|++.. ......+ +-|..+...| .++++++ ..|+.|.+||. +. .+.+.++. ++.. ...
T Consensus 174 ~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs----~~dg~iAiwD~~rnienpl~~i~~~~N~----~~~ 244 (783)
T KOG1008|consen 174 TSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCS----NSDGDIAIWDTYRNIENPLQIILRNENK----KPK 244 (783)
T ss_pred ccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceec----cccCceeeccchhhhccHHHHHhhCCCC----ccc
Confidence 679999999841 1111222 2356778888 7888877 55899999994 32 12222221 0000 011
Q ss_pred cceEEEEcCCCCeE-eecc------EEEEcC
Q 000177 1646 AYSQIHFSPSDTML-LWNG------ILWDRR 1669 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lL-aSgg------rLWDlr 1669 (1922)
....++|.|...-+ ++.. +++|+.
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 23348999976433 3222 788876
|
|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.15 Score=67.70 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=13.7
Q ss_pred ccCCCcCCCCCCCCCCCcccc
Q 000177 285 VTHGDECGADDGEPHDGLAAG 305 (1922)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~ 305 (1922)
.++|.+.++||++.-..+.+|
T Consensus 82 ~~e~Keaea~~ge~nS~l~~~ 102 (3015)
T KOG0943|consen 82 LEEGKEAEADGGELNSNLGAG 102 (3015)
T ss_pred hccCCccccccCccccccccc
Confidence 357788888888665544443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=90.33 E-value=11 Score=45.04 Aligned_cols=176 Identities=15% Similarity=0.258 Sum_probs=90.7
Q ss_pred eeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEeccCCCCCCcceEec--c---ceeEEEcCCCCEEEEeecCCCCCe
Q 000177 1546 SCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWNASSIAGGPMHSFE--G---CKAARFSNSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1546 tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWDl~t~~gk~l~tf~--g---h~sVaFSPDG~~LaSgS~~S~Dgt 1618 (1922)
.+.+-...+..| +|+|+...|++ .. .+.|...+.. ++.++++. + .-.|++..++.++++- ..++.
T Consensus 16 ~l~g~~~e~SGL--Ty~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~---Er~~~ 87 (248)
T PF06977_consen 16 PLPGILDELSGL--TYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDGFGDYEGITYLGNGRYVLSE---ERDQR 87 (248)
T ss_dssp E-TT--S-EEEE--EEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEE---TTTTE
T ss_pred ECCCccCCcccc--EEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCCCCCceeEEEECCCEEEEEE---cCCCc
Confidence 345555679999 88998665555 43 6667666653 56666543 3 2678888888777765 56889
Q ss_pred EEEEECCCCce------eeeecccccccc-CCCCcceEEEEcCCCCeEeecc-----EEEEcCC---Ccceeee-----c
Q 000177 1619 ILLYDIQTYQL------EAKLSDTSVNLT-GRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN---SVPVHRF-----D 1678 (1922)
Q Consensus 1619 IrIWDlrTgk~------i~tL~d~s~~~~-~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt---gk~I~kf-----~ 1678 (1922)
+.++++..... ...+. +... ..+....-++|+|.++.|+..- .||.++. ...+... .
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~---l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKIS---LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEEEEEeccccccchhhceEEe---cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 99998843211 11221 1110 0112233499999876666444 5666654 2121111 1
Q ss_pred ---cCCCce-EEEEecCCCEEEEEe----E--EEecCCCeEEEEEcCCC----------c-eeEEEccCCCEEEEE
Q 000177 1679 ---QFTDHG-GGGFHPAGNEVIINS----E--VWDLRKFRLLRSVPSLD----------Q-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1679 ---gh~~~V-sVaFSPdG~~LASGS----e--IWDLrTgklL~tl~gH~----------~-~sVaFSPdG~~LaSg 1733 (1922)
.+...+ ++.|+|....+..-| . ++| .+|+++..+.-.. + -.|+|.++|+..++.
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 111123 789999866555545 2 667 4587777665111 1 699999999666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=90.25 E-value=55 Score=42.70 Aligned_cols=109 Identities=11% Similarity=0.160 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccCCCC-----eeEEEeeecCCCcEEEEe---------cCCcEEEeccCCCCCC
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAP-----VTLVQSHLSGETQLLLSS---------SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~-----VtsLq~afSpDG~lLaSS---------sDgtVkLWDl~t~~gk 1587 (1922)
..++.++.+|.|.-+|..+|+.+-.+...... |.+- ..+. ++.+++.+ .++.+.-+|..+ ++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ss-P~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~T--G~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGA-PTIV-KKLVIIGSSGAEFFACGVRGALRAYDVET--GK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCC-CEEE-CCEEEEeccccccccCCCCcEEEEEECCC--Cc
Confidence 67888999999999999999988766432210 1110 0111 34444433 256777788877 66
Q ss_pred cceEeccc-------------------------eeEEEcCCCCEEEEeecCC---------------CCCeEEEEECCCC
Q 000177 1588 PMHSFEGC-------------------------KAARFSNSGNLFAALPTET---------------SDRGILLYDIQTY 1627 (1922)
Q Consensus 1588 ~l~tf~gh-------------------------~sVaFSPDG~~LaSgS~~S---------------~DgtIrIWDlrTg 1627 (1922)
.+.++... ....+.+.+.+++.++.++ .++.|.-+|..+|
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 66555321 1233444455666662111 1237999999999
Q ss_pred ceeeeec
Q 000177 1628 QLEAKLS 1634 (1922)
Q Consensus 1628 k~i~tL~ 1634 (1922)
+.+..+.
T Consensus 267 ~~~W~~~ 273 (488)
T cd00216 267 KVKWFYQ 273 (488)
T ss_pred CEEEEee
Confidence 9988765
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.77 Score=62.23 Aligned_cols=74 Identities=24% Similarity=0.342 Sum_probs=58.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe-eecCCCcEEEEec-CCcEEEeccC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS-HLSGETQLLLSSS-SQDVHLWNAS 1582 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~-afSpDG~lLaSSs-DgtVkLWDl~ 1582 (1922)
|..++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..+++++-+ -+..++..+++++ -|. +|.+.
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 44489999999999999999999999999999999999999877777766632 4555666666665 333 56553
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.88 E-value=36 Score=41.98 Aligned_cols=202 Identities=13% Similarity=0.107 Sum_probs=101.4
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec-
Q 000177 1516 TFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE- 1593 (1922)
Q Consensus 1516 aFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~- 1593 (1922)
.|.++.. ++.+--..+.|.-|+..+++. ..+. +.+.+.++. ... .+..|+++..+ +.+++..+ +..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~-~~d-~~g~Lv~~~~g-~~~~~~~~--~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGA-LID-AGGRLIACEHG-VRLLDPDT--GGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccce-eec-CCCeEEEEccc-cEEEeccC--CceeEEecc
Confidence 4666665 566677788899999876643 2232 122334441 233 33444444433 45566544 32222221
Q ss_pred ---c-----ceeEEEcCCCCEEEEeec-----CC---CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1594 ---G-----CKAARFSNSGNLFAALPT-----ET---SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1594 ---g-----h~sVaFSPDG~~LaSgS~-----~S---~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
+ -+.+...|+|.+.++... .. .-+.++.+|. .+..+..+.+ .-...+.++||||++
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-------~~~~~NGla~SpDg~ 175 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-------DLTIPNGLAFSPDGK 175 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-------cEEecCceEECCCCC
Confidence 1 267889999998777533 00 1133333343 4454444430 011223399999997
Q ss_pred eEe-ecc---EEEEcCC----Cc---c-eeee-ccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC
Q 000177 1658 MLL-WNG---ILWDRRN----SV---P-VHRF-DQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1658 lLa-Sgg---rLWDlrt----gk---~-I~kf-~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~ 1717 (1922)
.+. +.+ ++|...- +. . ...+ ....+.- .++...+|.+-+++. .+|+.. ++++..+.-..
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 665 444 4443321 11 1 1111 1111222 556666666553221 256666 77777776442
Q ss_pred c--eeEEE-ccCCCEEEEE
Q 000177 1718 Q--TTITF-NARGDVIYAI 1733 (1922)
Q Consensus 1718 ~--~sVaF-SPdG~~LaSg 1733 (1922)
. ++++| .|+.+.|+..
T Consensus 255 ~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCCccceEeCCCcCEEEEE
Confidence 2 45555 4456666655
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=89.63 E-value=19 Score=45.77 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=107.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-------------------------------------------eeee
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-------------------------------------------LESC 1547 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-------------------------------------------l~tL 1547 (1922)
.|+.+.|+++..-|++|...|.|.||.+...+. ..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 589999999999999999999999986632110 0112
Q ss_pred ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceE--ecc----------ceeEEEcC-----CC---CE
Q 000177 1548 TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHS--FEG----------CKAARFSN-----SG---NL 1606 (1922)
Q Consensus 1548 ~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~t--f~g----------h~sVaFSP-----DG---~~ 1606 (1922)
....++|+++ ..|.=| +++.+ .+|.+.|.|++. ...++. +.. ++++.|.. |+ -.
T Consensus 83 ~~~~g~vtal--~~S~iG-Fvaigy~~G~l~viD~RG--PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTAL--KNSDIG-FVAIGYESGSLVVIDLRG--PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEE--EE-BTS-EEEEEETTSEEEEEETTT--TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEE--ecCCCc-EEEEEecCCcEEEEECCC--CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 3346788888 566444 66554 699999999986 333332 111 24677753 23 25
Q ss_pred EEEeecCCCCCeEEEEECC--C-CceeeeeccccccccCCCCcceEEEEcCC-C--------------------CeEeec
Q 000177 1607 FAALPTETSDRGILLYDIQ--T-YQLEAKLSDTSVNLTGRGHAYSQIHFSPS-D--------------------TMLLWN 1662 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlr--T-gk~i~tL~d~s~~~~~~gh~~~vVaFSPd-G--------------------~lLaSg 1662 (1922)
+++| +..|.+.+|.+. . +.....+.... ....+....+..|+.+ | .+++.+
T Consensus 158 L~vG---Tn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 158 LLVG---TNSGNVLTFKILPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEE---ETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred EEEE---eCCCCEEEEEEecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 5666 666999999775 1 22211121111 0001111122334221 1 134433
Q ss_pred c----EEEEcCCCcceeeeccCCCce-EEEEe-----cCCCEEEEEe-----EEEecCCCeEEEEEcCCCc------eeE
Q 000177 1663 G----ILWDRRNSVPVHRFDQFTDHG-GGGFH-----PAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ------TTI 1721 (1922)
Q Consensus 1663 g----rLWDlrtgk~I~kf~gh~~~V-sVaFS-----PdG~~LASGS-----eIWDLrTgklL~tl~gH~~------~sV 1721 (1922)
+ +++...+.+..++.....-.. .+.|- ..+..|++-. +++.+-..+.+..+.-... ...
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 3 888888887776655221112 34442 2333333332 5888888888877764332 477
Q ss_pred EEccCCCEEEEE
Q 000177 1722 TFNARGDVIYAI 1733 (1922)
Q Consensus 1722 aFSPdG~~LaSg 1733 (1922)
.|+++|+.++-.
T Consensus 313 sis~~Gdi~~~~ 324 (395)
T PF08596_consen 313 SISRNGDIFYWT 324 (395)
T ss_dssp EE-TTS-EEEE-
T ss_pred EECCCCCEEEEe
Confidence 789999977755
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=89.41 E-value=52 Score=38.90 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=108.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--------------eccCCCCeeEEE-eeecCCCcEEEEecCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--------------CTSHQAPVTLVQ-SHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--------------L~gHss~VtsLq-~afSpDG~lLaSSsDg 1574 (1922)
..|+.+...++-+.|++=+ |+.+.++++..-..... -......+...+ -.......+|+.....
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 3499999998777665554 49999999875443321 111223344431 0122344566666677
Q ss_pred cEEEeccCCCC--C-CcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc---cCCCC
Q 000177 1575 DVHLWNASSIA--G-GPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL---TGRGH 1645 (1922)
Q Consensus 1575 tVkLWDl~t~~--g-k~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~---~~~gh 1645 (1922)
+|.+|.+.... . +....+. ...++.|. ++.++.| . .+...+.|+.++.....+....... .....
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~---~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~ 188 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG---T-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS 188 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE---e-CCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence 99998887521 1 2333332 23778888 5666665 3 3447899999877655442111000 00011
Q ss_pred cceE-EEEcCCCCeEeecc---EEEEcCCCccee--eeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcC
Q 000177 1646 AYSQ-IHFSPSDTMLLWNG---ILWDRRNSVPVH--RFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1646 ~~~v-VaFSPdG~lLaSgg---rLWDlrtgk~I~--kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~g 1715 (1922)
..+. +.--+++.+|++.. .+.|. .|++.+ .+.-...+.++++.. .||+.-+ +||++.++++++++..
T Consensus 189 ~~~~~~~~~~~~e~Ll~~~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~~--pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 189 SKPLGIFQLSDNEFLLCYDNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYSS--PYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCceEEEEeCCceEEEEecceEEEEcC-CCCcCcccEEEcCCchhEEEEEC--CEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 1122 22334467776544 44443 454443 222222233555533 4666555 6999999999999986
Q ss_pred CCc
Q 000177 1716 LDQ 1718 (1922)
Q Consensus 1716 H~~ 1718 (1922)
...
T Consensus 266 ~~~ 268 (275)
T PF00780_consen 266 PNI 268 (275)
T ss_pred CCE
Confidence 554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=89.37 E-value=20 Score=45.84 Aligned_cols=204 Identities=10% Similarity=0.138 Sum_probs=96.1
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC----Cceeeecc---CC--C--CeeEEEeeecCCCcEEEEe--c-C----CcEEEec
Q 000177 1520 DSSHIAVGS-HTKELKIFDSNSS----SPLESCTS---HQ--A--PVTLVQSHLSGETQLLLSS--S-S----QDVHLWN 1580 (1922)
Q Consensus 1520 DG~lLASGS-~DGtIkIWDl~tg----k~l~tL~g---Hs--s--~VtsLq~afSpDG~lLaSS--s-D----gtVkLWD 1580 (1922)
+-++|+..+ ..+.|.|+|+.+. +..+++.. +. + .-..+ .--|+|.+++|+ + + |.+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~--Hclp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTV--HCLPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEE--EE-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCcee--eecCCccEEEEeccCCCCCCCCcEEEEc
Confidence 345666666 7789999998743 23333322 11 0 11111 224789888873 2 2 3477888
Q ss_pred cCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecCC-----------------CCCeEEEEECCCCceeeeeccc
Q 000177 1581 ASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTET-----------------SDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~S-----------------~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
-++ ...+..++. ...+-|.|..+.+++...+. ..+++++||+.+.+.++++.
T Consensus 164 ~~t--f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id-- 239 (461)
T PF05694_consen 164 GET--FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID-- 239 (461)
T ss_dssp TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE--
T ss_pred Ccc--ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe--
Confidence 776 555555543 25677888888888874432 45789999999999999987
Q ss_pred cccccCCCCcceE-EEE--cCCCCeEeecc----EEEEc---CCCc----ceeeecc-----------------CCCce-
Q 000177 1637 SVNLTGRGHAYSQ-IHF--SPSDTMLLWNG----ILWDR---RNSV----PVHRFDQ-----------------FTDHG- 1684 (1922)
Q Consensus 1637 s~~~~~~gh~~~v-VaF--SPdG~lLaSgg----rLWDl---rtgk----~I~kf~g-----------------h~~~V- 1684 (1922)
.+..+..+. +.| .|+..+=+++. .||-+ ..++ .+-.+.. ...-+
T Consensus 240 ----Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 240 ----LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp ----S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred ----cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 112233232 444 45555544333 34433 2221 1111111 01223
Q ss_pred EEEEecCCCEEEEEe------EEEecCC---CeEEEEEc-CC-------------Cc----eeEEEccCCCEEEEE
Q 000177 1685 GGGFHPAGNEVIINS------EVWDLRK---FRLLRSVP-SL-------------DQ----TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1685 sVaFSPdG~~LASGS------eIWDLrT---gklL~tl~-gH-------------~~----~sVaFSPdG~~LaSg 1733 (1922)
.+..|.|.++|..++ +.||+.. -+++..+. |- .. .-|..|-||+.||..
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 789999999999988 5677754 34444332 10 00 578899999999977
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.98 E-value=4.1 Score=48.96 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=94.1
Q ss_pred EEEcCCCCeEeecc-------EEEEcCCCcceeeeccCCCce---EEEEecCCCEEEEEe----------EEEecCC-Ce
Q 000177 1650 IHFSPSDTMLLWNG-------ILWDRRNSVPVHRFDQFTDHG---GGGFHPAGNEVIINS----------EVWDLRK-FR 1708 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-------rLWDlrtgk~I~kf~gh~~~V---sVaFSPdG~~LASGS----------eIWDLrT-gk 1708 (1922)
++|+|.-..-+.-. .++|....+.+.++...++.- ..+|||+|.+|...- -|||.+. ++
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 77888765544222 899999888766665444432 579999999998765 2888874 45
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEc--cCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-----CceE
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILR--RNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-----RCVL 1779 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~--~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-----r~I~ 1779 (1922)
.+..++.|.. ..+.|.+||+.|+.+.. +-+.++-. ++-.-..+..++-.++..+...|...... -.|.
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR---~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGR---TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeCCceecccccCc---cccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 6667777665 79999999999998722 01101110 00011225678888888887777666553 2488
Q ss_pred EEEEcCCCceEEEEe
Q 000177 1780 DFATERTDSFVGLIT 1794 (1922)
Q Consensus 1780 dLa~SPdds~LAVVe 1794 (1922)
.++..++++...-..
T Consensus 230 Hld~g~dgtvwfgcQ 244 (366)
T COG3490 230 HLDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeeCCCCcEEEEEE
Confidence 889999998665444
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=9 Score=51.12 Aligned_cols=138 Identities=11% Similarity=0.080 Sum_probs=74.2
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCC-------
Q 000177 1510 ALLTCITFLGDSSHIAVGS------HTK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQ------- 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS------~DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDg------- 1574 (1922)
..+...++||||+.++.-. .|. .|.+++. .+.......+. ..+.- .|+|||..|.+-.|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~P--sWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRP--SWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCc--eECCCCCceEEEecCcceEEEe
Confidence 4578899999999876655 344 4444454 22222222332 24444 889998877664322
Q ss_pred ------cEEEeccCCCCCCcceEec-cceeEEEcCCCCEEEEeecCCCCCeEEE---EECCCCceeeeeccccccccCCC
Q 000177 1575 ------DVHLWNASSIAGGPMHSFE-GCKAARFSNSGNLFAALPTETSDRGILL---YDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1575 ------tVkLWDl~t~~gk~l~tf~-gh~sVaFSPDG~~LaSgS~~S~DgtIrI---WDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
.+.+.++.. +.....+. .+..+.|+|||.+++... ++.|.+ -....|. ..+..+.......+
T Consensus 425 ~~~~~gql~~~~vd~--ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~ 496 (591)
T PRK13616 425 RDPATGQLARTPVDA--SAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQ--YALTNPREVGPGLG 496 (591)
T ss_pred ccCCCceEEEEeccC--chhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCc--eeecccEEeecccC
Confidence 233334433 22222333 368899999999998862 356666 3333443 22221110111111
Q ss_pred CcceEEEEcCCCCeEe
Q 000177 1645 HAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLa 1660 (1922)
.....+.|.+++.+++
T Consensus 497 ~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 497 DTAVSLDWRTGDSLVV 512 (591)
T ss_pred CccccceEecCCEEEE
Confidence 1223378988888665
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=88.54 E-value=37 Score=43.47 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=21.3
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
..++.|..+.+.++. ..||++++||+.
T Consensus 83 iv~~~wt~~e~LvvV----~~dG~v~vy~~~ 109 (410)
T PF04841_consen 83 IVGMGWTDDEELVVV----QSDGTVRVYDLF 109 (410)
T ss_pred EEEEEECCCCeEEEE----EcCCEEEEEeCC
Confidence 366789887666655 678999999997
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=88.09 E-value=5 Score=52.18 Aligned_cols=139 Identities=12% Similarity=0.194 Sum_probs=83.7
Q ss_pred CCCeeEEEeeecCCCcEEEEe---cCCcEEEeccCCCCCCcceEeccceeEEEcCC----CCEEEEeecCCCCCeEEEEE
Q 000177 1551 QAPVTLVQSHLSGETQLLLSS---SSQDVHLWNASSIAGGPMHSFEGCKAARFSNS----GNLFAALPTETSDRGILLYD 1623 (1922)
Q Consensus 1551 ss~VtsLq~afSpDG~lLaSS---sDgtVkLWDl~t~~gk~l~tf~gh~sVaFSPD----G~~LaSgS~~S~DgtIrIWD 1623 (1922)
-.+|..+ +|....+.++|. ..|.+++=|- +.+..|+.+..+.|.|- --.+++. ...+.|.||-
T Consensus 19 iHPvhGl--aWTDGkqVvLT~L~l~~gE~kfGds-----~viGqFEhV~GlsW~P~~~~~~paLLAV---QHkkhVtVWq 88 (671)
T PF15390_consen 19 IHPVHGL--AWTDGKQVVLTDLQLHNGEPKFGDS-----KVIGQFEHVHGLSWAPPCTADTPALLAV---QHKKHVTVWQ 88 (671)
T ss_pred hccccce--EecCCCEEEEEeeeeeCCccccCCc-----cEeeccceeeeeeecCcccCCCCceEEE---eccceEEEEE
Confidence 4678899 676555555664 3666665543 35788888899999994 2234444 5678899998
Q ss_pred CC-----CCceeeeeccccccccCCCCcceE----EEEcCCCCeEee--cc---EEEEcCCCcceeeec-cCCCce-EEE
Q 000177 1624 IQ-----TYQLEAKLSDTSVNLTGRGHAYSQ----IHFSPSDTMLLW--NG---ILWDRRNSVPVHRFD-QFTDHG-GGG 1687 (1922)
Q Consensus 1624 lr-----Tgk~i~tL~d~s~~~~~~gh~~~v----VaFSPdG~lLaS--gg---rLWDlrtgk~I~kf~-gh~~~V-sVa 1687 (1922)
+. +.+.+.+..+. .+...++ +.|+|....|+. .- .+++++....--+.+ ...+.| |.+
T Consensus 89 L~~s~~e~~K~l~sQtcE------i~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCAC 162 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCE------IREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCAC 162 (671)
T ss_pred eccCccccccceeeeeee------ccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEE
Confidence 86 22222221100 0111122 789999987763 32 777877543222222 333445 999
Q ss_pred EecCCCEEEEE--e----EEEecC
Q 000177 1688 FHPAGNEVIIN--S----EVWDLR 1705 (1922)
Q Consensus 1688 FSPdG~~LASG--S----eIWDLr 1705 (1922)
|.+||+.|+.+ + -|||-.
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEecCc
Confidence 99999976554 3 278743
|
|
| >KOG0262 consensus RNA polymerase I, large subunit [Transcription] | Back alignment and domain information |
|---|
Probab=87.89 E-value=0.52 Score=64.15 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=18.8
Q ss_pred HhhcCChhhHHHHHHHHHHHHhcCC
Q 000177 648 RVCALPTDVVHQLVELAIQLLECTQ 672 (1922)
Q Consensus 648 RvC~lp~~vl~~lV~yaLwLLecsh 672 (1922)
++|.+..+++....+-+|..=.|+|
T Consensus 184 ~~~~~~~~lv~~f~k~~l~~kkC~~ 208 (1640)
T KOG0262|consen 184 NSTELKKKLVTAFLKNALSRKKCPR 208 (1640)
T ss_pred hhHHHHHHHHHHHHHHhhccccCCc
Confidence 4667777888888888887667765
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=86.37 E-value=63 Score=44.68 Aligned_cols=111 Identities=11% Similarity=0.078 Sum_probs=65.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCCC--------CeeEEEeeec----------------CCCcEEEEecCCcE
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQA--------PVTLVQSHLS----------------GETQLLLSSSSQDV 1576 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss--------~VtsLq~afS----------------pDG~lLaSSsDgtV 1576 (1922)
+..|+.++.++.|.-.|..+|+.+-.+.-+.. ....+.+ +. .++++++.+.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay-~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSY-YDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEE-ecCCcccccccccccccccCCEEEEecCCCeE
Confidence 55677777778888888888877665532211 0122211 11 12345555668888
Q ss_pred EEeccCCCCCCcceEeccce----------------eEEEcC--CCCEEEEeecCC-------CCCeEEEEECCCCceee
Q 000177 1577 HLWNASSIAGGPMHSFEGCK----------------AARFSN--SGNLFAALPTET-------SDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh~----------------sVaFSP--DG~~LaSgS~~S-------~DgtIrIWDlrTgk~i~ 1631 (1922)
.-.|..+ ++.+..|...- .+.-.| .+..++.|+... .+|.|+-||.+||+.+.
T Consensus 273 iALDA~T--Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADT--GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCC--CCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 8888887 77776653211 111222 244566653211 26889999999999988
Q ss_pred eec
Q 000177 1632 KLS 1634 (1922)
Q Consensus 1632 tL~ 1634 (1922)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=85.94 E-value=29 Score=44.53 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=87.3
Q ss_pred CCCEEEEeecCCCCCeEEEEECCC----CceeeeeccccccccCCCCcceE-EEEcCCCCeEeecc-----------EEE
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQT----YQLEAKLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG-----------ILW 1666 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrT----gk~i~tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg-----------rLW 1666 (1922)
..++|+..+ -..+.|.|+|+.+ .+..+++.+..+.. ..+...+- +..-|+|++++++- .+.
T Consensus 86 ~Rr~Li~Pg--L~SsrIyviD~~~dPr~P~l~KvIe~~ev~~-k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 86 ERRYLILPG--LRSSRIYVIDTKTDPRKPRLHKVIEPEEVFE-KTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -S-EEEEEB--TTT--EEEEE--S-TTS-EEEEEE-HHHHHH-HH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred cCCcEEeee--eccCcEEEEECCCCCCCCceEeeeCHHHHHh-hcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 356777763 3557899999984 34444444211110 01222222 66678898888542 788
Q ss_pred EcCCCcceeeeccCCCc--e--EEEEecCCCEEEEEe-------------------------EEEecCCCeEEEEEcCCC
Q 000177 1667 DRRNSVPVHRFDQFTDH--G--GGGFHPAGNEVIINS-------------------------EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1667 Dlrtgk~I~kf~gh~~~--V--sVaFSPdG~~LASGS-------------------------eIWDLrTgklL~tl~gH~ 1717 (1922)
|-.+...+..+...... . ..-|+|..+.++|.+ .+||+.+.++++++.--.
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 87777777777654332 2 678899999999887 299999999999997332
Q ss_pred c----eeEEE--ccCCCEEEEEE--ccCchhhhhhhcccccccCCcceEEEEe--cCCCceeeeecc-------------
Q 000177 1718 Q----TTITF--NARGDVIYAIL--RRNLEDVMSAVHTRRVKHPLFAAFRTVD--AINYSDIATIPV------------- 1774 (1922)
Q Consensus 1718 ~----~sVaF--SPdG~~LaSgs--~~d~~dv~s~lh~rr~ksp~~ssFrt~D--a~dys~IaTidv------------- 1774 (1922)
. -.|.| +|+..+=+++. ..+. |+.+. ...|.--..+++
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i-------------------~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSI-------------------WRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEE-------------------EEEEE-ETTEEEEEEEEEE--EE--SS---GG
T ss_pred CCCceEEEEecCCCCccceEEEEeccceE-------------------EEEEEcCCCCeeeeEEEECCCcccCccccccc
Confidence 2 34555 55555555442 1111 11111 111211111111
Q ss_pred -------CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1775 -------DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1775 -------kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
..-|.|+..|.+|++|-+.. -..+.+|.|+|..
T Consensus 304 l~~~~~~P~LitDI~iSlDDrfLYvs~-----W~~GdvrqYDISD 343 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDRFLYVSN-----WLHGDVRQYDISD 343 (461)
T ss_dssp GGGG-EE------EEE-TTS-EEEEEE-----TTTTEEEEEE-SS
T ss_pred ccccccCCCceEeEEEccCCCEEEEEc-----ccCCcEEEEecCC
Confidence 23389999999999999875 2346788887743
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.8 Score=38.84 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP 1543 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~ 1543 (1922)
..|.+++|+|...+||.|+.+|.|.||.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 57999999999999999999999999998 4543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.81 E-value=64 Score=40.72 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=94.6
Q ss_pred EEEEcCCCCEEEEEeCCC-----------cEEEEECCCCCce--eeeccCCCCe--eEEEeeecCCCcEEEE-e-c--C-
Q 000177 1514 CITFLGDSSHIAVGSHTK-----------ELKIFDSNSSSPL--ESCTSHQAPV--TLVQSHLSGETQLLLS-S-S--S- 1573 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DG-----------tIkIWDl~tgk~l--~tL~gHss~V--tsLq~afSpDG~lLaS-S-s--D- 1573 (1922)
.+.|.+|++.|+....+. .|+.|.+.+.... ..|......+ ..+ ..++|+++|+. + + +
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~--~~s~d~~~l~i~~~~~~~~ 251 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV--SRSKDGRYLFISSSSGTSE 251 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE--EE-TTSSEEEEEEESSSSE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE--EecCcccEEEEEEEccccC
Confidence 499999998776665443 3788888777543 4555544443 455 78999998875 2 2 4
Q ss_pred CcEEEeccCCC---CCCcceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce---eeeeccccccccCCC
Q 000177 1574 QDVHLWNASSI---AGGPMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL---EAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1574 gtVkLWDl~t~---~gk~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~---i~tL~d~s~~~~~~g 1644 (1922)
..+.+.++... ...+.... .++....-+..+.+++.+..+...+.|...++.+... ...+. . +.
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-----~--~~ 324 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-----P--ED 324 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---------S
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-----C--CC
Confidence 45777787752 11222222 2333333333455555554455667888888887653 11222 0 11
Q ss_pred CcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCc-e-EEEEecCCCEEEEE--e-----E--EEecC
Q 000177 1645 HAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDH-G-GGGFHPAGNEVIIN--S-----E--VWDLR 1705 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~-V-sVaFSPdG~~LASG--S-----e--IWDLr 1705 (1922)
.......+...+.+|+... ++||+..+............ + .+...++++.+... | . .||+.
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred CceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 2223345555555555322 78998834444334333322 3 44445555543322 2 2 45666
Q ss_pred CCeE
Q 000177 1706 KFRL 1709 (1922)
Q Consensus 1706 Tgkl 1709 (1922)
+++.
T Consensus 405 t~~~ 408 (414)
T PF02897_consen 405 TGEL 408 (414)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 6654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.89 E-value=58 Score=39.21 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=51.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEec
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFE 1593 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~ 1593 (1922)
-|++++.|.+.|.+++.++.+|.....+..- +-.+.. ...+++.++..++ |++....|.++ ..++...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a---~~d~~~glIycgshd~~~yalD~~~--~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA---QCDFDGGLIYCGSHDGNFYALDPKT--YGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce---EEcCCCceEEEecCCCcEEEecccc--cceEEecc
Confidence 4778999999999999999999776665321 222222 3456888888854 99999999988 66776654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.86 E-value=1.9e+02 Score=40.57 Aligned_cols=272 Identities=15% Similarity=0.132 Sum_probs=128.6
Q ss_pred CCEEEEEEcCC--C-C---EEEEEeCCCcEEEEECCCCCceee---eccC--CCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1510 ALLTCITFLGD--S-S---HIAVGSHTKELKIFDSNSSSPLES---CTSH--QAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1510 ~~Vt~LaFSPD--G-~---lLASGS~DGtIkIWDl~tgk~l~t---L~gH--ss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
..|.|+.++|- + + +++.|.++..+.+.-....-++.+ +.+. ...|.-. .+-.|..+|.++ .||.+.
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~--~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLT--TFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeE--EeeccceEEEEEcCCceEE
Confidence 66999999983 2 2 799999988876654432222211 1111 1122222 444556777775 599887
Q ss_pred EeccCCCCCCc---ceEeccc---eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1578 LWNASSIAGGP---MHSFEGC---KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1578 LWDl~t~~gk~---l~tf~gh---~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
-|.+....++. ....-|. .--.|+..+ ..++++ .|+-..+|-.+..-+...+. . ......+
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~----sdrP~viY~~n~kLv~spls---~-----kev~~~c 676 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL----SDRPTVIYSSNGKLVYSPLS---L-----KEVNHMC 676 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe----CCCCEEEEecCCcEEEeccc---h-----HHhhhhc
Confidence 66554421221 1111121 122344433 344443 35555666554322222221 0 0111113
Q ss_pred EEcCC----CCeEeecc--EEEEcCCCc--ceeeeccCCCceEEEEecCCCEEEEEe-------------------EEEe
Q 000177 1651 HFSPS----DTMLLWNG--ILWDRRNSV--PVHRFDQFTDHGGGGFHPAGNEVIINS-------------------EVWD 1703 (1922)
Q Consensus 1651 aFSPd----G~lLaSgg--rLWDlrtgk--~I~kf~gh~~~VsVaFSPdG~~LASGS-------------------eIWD 1703 (1922)
.|+.+ +-.+++++ ++.-+..-+ .+++..-+...-.++|++....+.+.+ +++|
T Consensus 677 ~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD 756 (1096)
T KOG1897|consen 677 PFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD 756 (1096)
T ss_pred ccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec
Confidence 33322 11222333 333333211 233333333333556665433333333 4777
Q ss_pred cCCCeEEEEEcCCCc------eeEEEccC-CCEEEEEEccCchhhhhhhcccccccCCcceEEEE---ecCCCceeeeec
Q 000177 1704 LRKFRLLRSVPSLDQ------TTITFNAR-GDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV---DAINYSDIATIP 1773 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~------~sVaFSPd-G~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~---Da~dys~IaTid 1773 (1922)
-+|++.+...+-... .++.|..+ +.+++.|..-...+ . ..|....+.++ +....+.++...
T Consensus 757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pd--------e-~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPD--------E-NEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccC--------C-CCcccceEEEEEEecCCceeeeeeee
Confidence 777776654442211 45668777 66666663211000 0 11222333333 334455566666
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1774 VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1774 vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
++..++++. --+|+++|.+. +.+|+|+.+..
T Consensus 828 v~Gav~aL~-~fngkllA~In--------~~vrLye~t~~ 858 (1096)
T KOG1897|consen 828 VKGAVYALV-EFNGKLLAGIN--------QSVRLYEWTTE 858 (1096)
T ss_pred eccceeehh-hhCCeEEEecC--------cEEEEEEcccc
Confidence 676666654 23677777552 67889888665
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=84.67 E-value=11 Score=50.41 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=73.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCC-----
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASS----- 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t----- 1583 (1922)
..+-+.-|.-++..++-+...++.|||...+.....-. ...+.|.++.|...|+++.+++ |-.+.|.||.-..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445555556655555556689999998887543322 4578999999999999998887 7799998875421
Q ss_pred --CCCCcceEe-----cc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1584 --IAGGPMHSF-----EG--CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1584 --~~gk~l~tf-----~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
+...++..+ .. +....|.++|..++++ ++.+.|||-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-----GNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-----GNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-----CCEEEEECCC
Confidence 112233332 11 2568899999887765 2668888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.50 E-value=0.58 Score=63.30 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=12.7
Q ss_pred HhhhcccHHHHHHHHhhh
Q 000177 695 AFDAQDGLQKLLGLLNDA 712 (1922)
Q Consensus 695 ~FD~~dGLrkL~N~i~~l 712 (1922)
.||.-.||..|.++|+-+
T Consensus 141 Vf~~ke~l~~l~~~L~~l 158 (1128)
T KOG2051|consen 141 VFDDKEGLSPLRKVLSIL 158 (1128)
T ss_pred eeeccchhhhHHHHHHHH
Confidence 357777777777777755
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=84.07 E-value=49 Score=43.23 Aligned_cols=100 Identities=9% Similarity=0.096 Sum_probs=58.9
Q ss_pred CCCcEEEEECCCCCceeeeccCCC--------------------CeeEEEeeecCC-CcEEEEecCC-------------
Q 000177 1529 HTKELKIFDSNSSSPLESCTSHQA--------------------PVTLVQSHLSGE-TQLLLSSSSQ------------- 1574 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~gHss--------------------~VtsLq~afSpD-G~lLaSSsDg------------- 1574 (1922)
.+|.|.-+|..+|+.+-.+..... .|++- ..+.+. +.+++.+.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~-pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS-PTYDPKTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC-eeEeCCCCEEEEECCCCCCCccCCccCCCC
Confidence 367889999999988766643211 01110 123333 3344444443
Q ss_pred -----cEEEeccCCCCCCcceEeccc----e------eEEEc----CCCC---EEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1575 -----DVHLWNASSIAGGPMHSFEGC----K------AARFS----NSGN---LFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1575 -----tVkLWDl~t~~gk~l~tf~gh----~------sVaFS----PDG~---~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
.|.-+|..+ ++.+.+++.. + ...+. -++. .++.+ +.+|.+..+|.++|+.+..
T Consensus 252 ~~~~~~l~Ald~~t--G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g---~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 252 NLYTDSIVALDADT--GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA---PKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CCceeeEEEEcCCC--CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE---CCCceEEEEECCCCcEeeE
Confidence 688888887 7777665421 0 11111 1232 45555 7789999999999998876
Q ss_pred ec
Q 000177 1633 LS 1634 (1922)
Q Consensus 1633 L~ 1634 (1922)
..
T Consensus 327 ~~ 328 (488)
T cd00216 327 RP 328 (488)
T ss_pred eE
Confidence 64
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=84.06 E-value=17 Score=45.59 Aligned_cols=142 Identities=10% Similarity=0.124 Sum_probs=77.2
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--CCc--eeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1510 ALLTCITFLGDSSHIAVGS-----------HTK-ELKIFDSNS--SSP--LESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS-----------~DG-tIkIWDl~t--gk~--l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
.....++|.++|+++++-. ..+ .|.+++-.+ |+. ...|-..-...+.| .+.+++ +++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi--~~~~~G-lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGL--AVAVGG-VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccce--eEecCC-EEEeCCC
Confidence 3457889999999777643 233 677776432 332 23443233345777 778888 6666545
Q ss_pred CcEEEeccCCC---CCCc--c-eEecc------c--eeEEEcCCCCEEEEeecCC----------------CCCeEEEEE
Q 000177 1574 QDVHLWNASSI---AGGP--M-HSFEG------C--KAARFSNSGNLFAALPTET----------------SDRGILLYD 1623 (1922)
Q Consensus 1574 gtVkLWDl~t~---~gk~--l-~tf~g------h--~sVaFSPDG~~LaSgS~~S----------------~DgtIrIWD 1623 (1922)
...++.|.... .++. + ..|.. | +.+.|.|||.+.++.+..+ ..+.|.-+|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43344455321 0011 1 11211 2 5789999998777653110 013444555
Q ss_pred CCCCceeeeeccccccccCCCCcceE-EEEcCCCCeEeecc
Q 000177 1624 IQTYQLEAKLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1624 lrTgk~i~tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg 1663 (1922)
..+++. ..+. .++.... ++|+|+|+++++..
T Consensus 171 pdg~~~-e~~a--------~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVA--------HGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEe--------cCcCCCccceECCCCCEEEEcc
Confidence 544332 2221 2444333 89999998888765
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.00 E-value=0.84 Score=59.80 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 000177 749 IAYHTCVALRQYFRAHLLLLVD 770 (1922)
Q Consensus 749 ~~~h~c~aLR~Yf~aHL~~~v~ 770 (1922)
-++-+..-.+.||+.-+.--++
T Consensus 149 sa~~s~~vm~k~~~~~~~~aiD 170 (960)
T KOG1189|consen 149 SAAASSAVMNKYLVDELVEAID 170 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445566655554444
|
|
| >KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.59 E-value=0.81 Score=59.91 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=4.7
Q ss_pred hhccccccC
Q 000177 712 AASVRSGVN 720 (1922)
Q Consensus 712 l~~l~~~~~ 720 (1922)
-||+.||++
T Consensus 207 ~PIiqSGg~ 215 (960)
T KOG1189|consen 207 PPIIQSGGK 215 (960)
T ss_pred ChhhhcCCc
Confidence 455555554
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.53 E-value=0.52 Score=63.43 Aligned_cols=12 Identities=0% Similarity=-0.047 Sum_probs=4.6
Q ss_pred HHHHHHHhccCC
Q 000177 1095 KKLSELIRDSGG 1106 (1922)
Q Consensus 1095 ~~lq~Lmr~p~l 1106 (1922)
+++.-.+-.-+.
T Consensus 457 ~~mE~flv~hVf 468 (1010)
T KOG1991|consen 457 SQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHhh
Confidence 344433333333
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=83.11 E-value=10 Score=46.86 Aligned_cols=107 Identities=13% Similarity=0.206 Sum_probs=54.8
Q ss_pred eeEEEeeecCCCcEEEEecCCcEEEeccCCCCC-CcceEecc--------ceeEEEcCC----CCEEEEeecC---CCC-
Q 000177 1554 VTLVQSHLSGETQLLLSSSSQDVHLWNASSIAG-GPMHSFEG--------CKAARFSNS----GNLFAALPTE---TSD- 1616 (1922)
Q Consensus 1554 VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~g-k~l~tf~g--------h~sVaFSPD----G~~LaSgS~~---S~D- 1616 (1922)
-+.| +|.|||+++++-..|.|++++-.. .. ..+..+.. ...++|+|+ +..+++.+.. ...
T Consensus 4 P~~~--a~~pdG~l~v~e~~G~i~~~~~~g-~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSM--AFLPDGRLLVAERSGRIWVVDKDG-SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEE--EEETTSCEEEEETTTEEEEEETTT-EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEE--EEeCCCcEEEEeCCceEEEEeCCC-cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3567 889999999998899999999322 11 11222221 267899994 4444433210 111
Q ss_pred -CeEEEEECCCC-ce---eeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1617 -RGILLYDIQTY-QL---EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1617 -gtIrIWDlrTg-k~---i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
..|.-|....+ .. ...+-..........|....+.|.|+|.++++.|
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 23333433322 11 1111100011112467778899999998888666
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46 | Back alignment and domain information |
|---|
Probab=82.83 E-value=0.77 Score=61.14 Aligned_cols=6 Identities=0% Similarity=0.490 Sum_probs=2.9
Q ss_pred eEEEEE
Q 000177 1804 SARIYE 1809 (1922)
Q Consensus 1804 sVRLyE 1809 (1922)
.|.+|+
T Consensus 98 ~v~v~d 103 (622)
T PF02724_consen 98 QVIVFD 103 (622)
T ss_pred cEEEEE
Confidence 445553
|
Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=82.01 E-value=57 Score=41.69 Aligned_cols=190 Identities=14% Similarity=0.141 Sum_probs=94.6
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--ecc------CCCCeeEEEee---ecCCC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--CTS------HQAPVTLVQSH---LSGET 1565 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--L~g------Hss~VtsLq~a---fSpDG 1565 (1922)
.|.|...+.... ++|++++.|.- -+++.|..+|.+.|.|++....+.. +.. ....|++++|. +..|+
T Consensus 75 gf~P~~l~~~~~-g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQ-GPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S--SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccC-CcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 477888788777 99999999844 4999999999999999976655543 122 34568888663 33344
Q ss_pred ---cEEEEe-cCCcEEEeccCC-CCCCcceEeccc--------ee-EEEcCC---------------------CCEEEEe
Q 000177 1566 ---QLLLSS-SSQDVHLWNASS-IAGGPMHSFEGC--------KA-ARFSNS---------------------GNLFAAL 1610 (1922)
Q Consensus 1566 ---~lLaSS-sDgtVkLWDl~t-~~gk~l~tf~gh--------~s-VaFSPD---------------------G~~LaSg 1610 (1922)
-+++.| ..|.+.+|.+-- ..+.....+.+. .. ..|+.+ ..+++.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 244444 578888887742 112111111111 11 112110 1234443
Q ss_pred ecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEc-----CCCCeEe---ecc--EEEEcCCCcceeeeccC
Q 000177 1611 PTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFS-----PSDTMLL---WNG--ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1611 S~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFS-----PdG~lLa---Sgg--rLWDlrtgk~I~kf~gh 1680 (1922)
.+..++++..-+.+..++..+. ......+.+- ..+..|+ ..| ++|.+..-+.+..++-.
T Consensus 233 ----Se~~irv~~~~~~k~~~K~~~~-------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 233 ----SESDIRVFKPPKSKGAHKSFDD-------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp -----SSEEEEE-TT---EEEEE-SS--------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred ----cccceEEEeCCCCcccceeecc-------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 3567999998887766554310 0111123332 1233333 233 88888888888777654
Q ss_pred CC----ce-EEEEecCCCEEEEEe
Q 000177 1681 TD----HG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1681 ~~----~V-sVaFSPdG~~LASGS 1699 (1922)
.. .+ ...|+++|..++-.+
T Consensus 302 ~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 302 PPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp S---HHHHTT-EE-TTS-EEEE-S
T ss_pred CccccccccccEECCCCCEEEEeC
Confidence 32 12 577899999887655
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=81.76 E-value=2.2e+02 Score=39.08 Aligned_cols=111 Identities=9% Similarity=0.067 Sum_probs=67.4
Q ss_pred CEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-C-----CcEEE
Q 000177 1511 LLTCITFLGDSSHIAVGSH-----TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-S-----QDVHL 1578 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~-----DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-D-----gtVkL 1578 (1922)
.+..+.|||||++|+.+.. .-+|++-|+.+|..+........ ..+ .|++|++.|+. .. + ..|++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~--~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSF--VWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEE--EEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 4667889999998876543 34688999988864433221111 456 78888875544 32 2 35788
Q ss_pred eccCCCCCCcceEecc----ce-eEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1579 WNASSIAGGPMHSFEG----CK-AARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~g----h~-sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
|++.+...+-...+.+ .. .+..+.++++++..+....++.+.+|+..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8887721122233332 12 22334478877666566677889999953
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=81.67 E-value=2.1 Score=43.12 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=75.8
Q ss_pred hhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCcc--cccccceeee
Q 000177 561 VLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNNQ--TFFGLSSCLF 637 (1922)
Q Consensus 561 ~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s~--a~tgvS~Cly 637 (1922)
+.+.+++..++.+|..+ +..+...++..|+.|..+ ..-...|++.|+++.|+.+=+.+- ..-....||+
T Consensus 3 ~~~~~~i~~l~~~l~~~--------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~ 74 (120)
T cd00020 3 VIQAGGLPALVSLLSSS--------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALR 74 (120)
T ss_pred HHHcCChHHHHHHHHcC--------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677888878877642 135678899999999988 788888999999999998766531 1112334444
Q ss_pred hhcchhh-HHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh
Q 000177 638 TIGSLQG-IMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAA 685 (1922)
Q Consensus 638 ylay~~~-aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~ 685 (1922)
.|++... ..+.+.. ..++.+.+.+|...+...|.+|+.+|..
T Consensus 75 ~l~~~~~~~~~~~~~------~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 75 NLAAGPEDNKLIVLE------AGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHccCcHHHHHHHHH------CCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4544442 2222221 2368888888988899999998877763
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=80.66 E-value=77 Score=47.93 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=50.4
Q ss_pred HHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHh-ccccchhhhcc
Q 000177 544 CIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFV-DRGGMQKLLAV 622 (1922)
Q Consensus 544 ~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV-~~gGlq~LL~v 622 (1922)
.|..|+.-.+.|- ..+.+.+++..+..||.. .+...--+|.+.|..|.+|..--...| +.|.|+.|+++
T Consensus 469 ~L~nLa~~ndenr--~aIieaGaIP~LV~LL~s--------~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 469 LLAILTDEVDESK--WAITAAGGIPPLVQLLET--------GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred HHHHHHcCCHHHH--HHHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence 4555554333333 357799999998998853 222445679999999999986656666 67999998887
Q ss_pred CCC
Q 000177 623 PRN 625 (1922)
Q Consensus 623 PR~ 625 (1922)
=+.
T Consensus 539 L~s 541 (2102)
T PLN03200 539 LKN 541 (2102)
T ss_pred HhC
Confidence 654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.43 E-value=5 Score=52.32 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEec--c--c-eeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1552 APVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFE--G--C-KAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~--g--h-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
..|.-+ .|+|.-.+++.. .+|.|.+..++ .+.+.++. + . .+++|.|||+.|+.| -.||+|++.|+.
T Consensus 21 ~~i~~~--ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg---~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRI--EWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVG---FKDGTIRLHDVE 92 (665)
T ss_pred cceEEE--EEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEE---ecCCeEEEEEcc
Confidence 345556 678887888885 47766555544 23344443 1 2 589999999999999 889999999999
Q ss_pred CCceeeee
Q 000177 1626 TYQLEAKL 1633 (1922)
Q Consensus 1626 Tgk~i~tL 1633 (1922)
++..+..+
T Consensus 93 ~~~~l~~~ 100 (665)
T KOG4640|consen 93 KGGRLVSF 100 (665)
T ss_pred CCCceecc
Confidence 99887763
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.40 E-value=4.7 Score=55.19 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=61.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEeccc--
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC-- 1595 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh-- 1595 (1922)
.+.+++.|+.-|.|-.+|+...-..... ..-.++|+++ +|+.+|.+++.| .+|.|.+||+.. +++++.+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsv--afn~dg~~l~~G~~~G~V~v~D~~~--~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSV--AFNQDGSLLLAGLGDGHVTVWDMHR--AKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceee--EecCCCceeccccCCCcEEEEEccC--CcceeeeeecCC
Confidence 4668999999999999887543111111 2236899999 899999999998 599999999997 6777666542
Q ss_pred --ee---EEEcCCCCEEEEe
Q 000177 1596 --KA---ARFSNSGNLFAAL 1610 (1922)
Q Consensus 1596 --~s---VaFSPDG~~LaSg 1610 (1922)
.+ +.|..++..++++
T Consensus 174 p~t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEc
Confidence 23 3344455566765
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.15 E-value=1.6 Score=61.51 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCcCccCC-CCCcCCC-------------cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1813 RRPTEDDSDPDDAESDEEDEED-DDDVDVD-------------PLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGD 1878 (1922)
Q Consensus 1813 ~r~~EDDeDdEDedDeDDDEDD-DDDEDdD-------------~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD 1878 (1922)
..+.+..+|+++.+++--.||+ .+|..++ +..-..++..+|.++|-+-+|=|-+-.+|+.++.|.+
T Consensus 3947 d~d~q~~~de~e~~ddvg~ddeiq~d~~en~~~~~pe~e~ldlpedl~ld~~~~d~~~d~dl~dmdme~~den~eead~e 4026 (4600)
T COG5271 3947 DKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAE 4026 (4600)
T ss_pred ccchhhhcchhhhccccCcccccCcchhcccCCCCCccccCCCchhcCCccccccccccCChhhccchhcccchhhcccc
Q ss_pred CCCCCCCCCCCCCccccccCCCCcchhhhhhccCCCCcccccC
Q 000177 1879 FMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEEDFIG 1921 (1922)
Q Consensus 1879 ~~~ddeD~dgg~~~~ei~~d~dedDd~~~~e~~~~~de~~~~~ 1921 (1922)
.+.-..|+|.++.--.+++|..-||++|.-|+++-.+||||.+
T Consensus 4027 ~dep~~ded~~e~~~tlded~~~dd~~dla~dd~k~nedg~ee 4069 (4600)
T COG5271 4027 KDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEE 4069 (4600)
T ss_pred cCCCCCCCCccccccccchhhccchhhhhhcccccccccchhh
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1922 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.95 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.95 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.95 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.95 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.95 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.94 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.94 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.94 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.94 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.94 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.94 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.93 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.93 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.93 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.93 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.93 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.93 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.92 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.92 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.92 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.92 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.92 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.92 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.92 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.92 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.91 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.91 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.91 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.91 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.91 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.91 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.9 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.9 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.9 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.9 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.9 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.9 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.9 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.9 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.9 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.9 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.89 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.89 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.89 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.89 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.89 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.88 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.88 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.88 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.88 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.88 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.87 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.86 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.86 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.86 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.86 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.86 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.86 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.86 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.86 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.86 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.85 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.85 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.85 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.85 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.85 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.84 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.83 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.83 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.83 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.82 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.81 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.79 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.79 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.77 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.77 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.77 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.75 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.75 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.74 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.73 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.73 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.72 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.72 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.71 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.7 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.7 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.69 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.68 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.67 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.67 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.64 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.62 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.61 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.61 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.58 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.58 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.57 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.55 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.55 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.54 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.52 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.51 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.51 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.5 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.48 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.45 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.43 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.43 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.41 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.41 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.37 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.36 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.35 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.32 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.31 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.27 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.26 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.23 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.22 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.22 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.19 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.19 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.13 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.11 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.09 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.09 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.06 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.03 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.03 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.02 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.02 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.99 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.97 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.95 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.94 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.94 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.93 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.92 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.88 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.88 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.87 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.85 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.83 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.81 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.79 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.77 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.69 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.69 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.68 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.68 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.67 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.6 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.59 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.58 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.58 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.57 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.56 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.49 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.45 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.43 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.37 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.36 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.32 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.32 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.27 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.26 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.24 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.24 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.21 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.12 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.08 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.06 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.05 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.03 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.01 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.99 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.99 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.93 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.89 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.8 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.8 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.7 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.68 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.52 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.39 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.36 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.35 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.32 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.28 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.2 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.18 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.12 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 97.06 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 97.05 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 96.91 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.85 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.82 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.75 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.74 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.71 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.71 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.68 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.67 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 96.59 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.59 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.58 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.51 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.5 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 96.38 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.26 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 96.26 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.25 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.21 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.18 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 96.14 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.05 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.03 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 95.81 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.8 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.79 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 95.76 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 95.71 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.7 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.61 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 95.42 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.41 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.13 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.11 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.11 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.09 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 94.91 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 94.76 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 94.61 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 94.61 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.45 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 94.43 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 94.33 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 94.28 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.22 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 94.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 93.8 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 93.75 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 93.71 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 93.54 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 93.25 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 93.11 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 92.76 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 92.52 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.34 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 92.32 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 92.25 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.06 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 91.83 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 91.73 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 91.45 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 91.11 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 90.93 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 90.87 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 90.7 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 89.46 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 89.04 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 88.61 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 88.58 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 88.23 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 88.08 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 87.73 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 87.44 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 87.21 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 86.38 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 86.24 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 85.48 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 83.5 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 83.18 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 82.08 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 81.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 80.21 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=317.08 Aligned_cols=267 Identities=15% Similarity=0.229 Sum_probs=235.8
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
.++.+|. +.|++++|+|++.+|++|+.||+|+|||+.+++...++.+|...|+++ +|+|++++|+++ .|++|+|||
T Consensus 102 ~~l~gh~-~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v--~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 102 YALSGHR-SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI--SFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CEEECCS-SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEE--EECTTSSEEEEEETTSCCCEEE
T ss_pred EeecccC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEE--EEcCCCCEEEEEeCCCeEEEEe
Confidence 3467999 999999999999999999999999999999999999999999999999 889999999995 599999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc--eEEEEcC
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY--SQIHFSP 1654 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~--~vVaFSP 1654 (1922)
+.+ ++++.++.+| .+++|+|++++|+++ +.|++|++||++++.++.++. +|.. ..+.|+|
T Consensus 179 ~~~--~~~~~~~~~h~~~V~~v~~~p~~~~l~s~---s~D~~i~~wd~~~~~~~~~~~---------~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 179 FQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMWEVQTGYCVKTFT---------GHREWVRMVRPNQ 244 (410)
T ss_dssp TTS--SCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEEE---------CCSSCEEEEEECT
T ss_pred CCC--CceeEEEcCCCCCEEEEEEeCCCCEEEEE---eCCCeEEEEECCCCcEEEEEe---------CCCccEEEEEECC
Confidence 987 7788888775 789999999999999 889999999999999988886 4544 4499999
Q ss_pred CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecC--------------------CCEEEEEe-----EEEe
Q 000177 1655 SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPA--------------------GNEVIINS-----EVWD 1703 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPd--------------------G~~LASGS-----eIWD 1703 (1922)
++.+|++++ ++||+++++++..+.+|...+ ++.|+|+ |.+|++|+ ++||
T Consensus 245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 999999887 999999999999999999988 9999996 67899998 5999
Q ss_pred cCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEE
Q 000177 1704 LRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLD 1780 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~d 1780 (1922)
+++++++.++.+|.. ++++|+|+|++|++++. +..+++||..+...+.++.. ...|.+
T Consensus 325 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-------------------D~~i~vwd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 325 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-------------------DKTLRVWDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-------------------TTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred CCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-------------------CCeEEEEECCCCceEEEEcCCCCcEEE
Confidence 999999999999987 79999999999999852 34577788777777777765 456999
Q ss_pred EEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1781 FATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1781 La~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++|+|++.+++... .|..+++|++
T Consensus 386 l~~~~~~~~l~sgs------~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGS------VDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEE------TTSEEEEEC-
T ss_pred EEEcCCCCEEEEEe------CCCcEEEEeC
Confidence 99999999988653 4578999975
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=295.00 Aligned_cols=271 Identities=19% Similarity=0.256 Sum_probs=229.1
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
++..++|++|. +.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.++ .|+|++++|+++ .|+.|
T Consensus 45 ~~~~~~l~gH~-~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHL-AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC--AYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCS-SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEE--EECTTSSEEEEEETTCEE
T ss_pred chhheeecCCC-CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEE--EECCCCCEEEEEeCCCeE
Confidence 45567899999 999999999999999999999999999999999999999999999999 899999999995 59999
Q ss_pred EEeccCCCCC--CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ce
Q 000177 1577 HLWNASSIAG--GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YS 1648 (1922)
Q Consensus 1577 kLWDl~t~~g--k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~ 1648 (1922)
++||+.+... .....+.+| .++.|++++. ++++ +.|++|++||+.+++++.++. +|. +.
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~---s~d~~i~~wd~~~~~~~~~~~---------~h~~~v~ 188 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS---SGDTTCALWDIETGQQTTTFT---------GHTGDVM 188 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEE---ETTSCEEEEETTTTEEEEEEC---------CCSSCEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEE---ECCCcEEEEECCCCcEEEEEc---------CCCCceE
Confidence 9999986211 233445554 6789998875 7777 789999999999999988875 454 44
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~ 1717 (1922)
.++|+|+++++++++ ++||+++++++.+|.+|...+ +++|+|+|++|++++ ++||+++++.+.++..+.
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 268 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC
Confidence 599999999999887 999999999999999999988 999999999999999 699999999888876332
Q ss_pred ----ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEE
Q 000177 1718 ----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGL 1792 (1922)
Q Consensus 1718 ----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAV 1792 (1922)
.++++|+|+|++|+++.. +..+++||..+...+.++.. ...|..++|+|++.+++.
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~-------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYD-------------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEET-------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred cccceEEEEECCCCCEEEEECC-------------------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence 279999999999999853 23567777777776666654 456999999999999986
Q ss_pred EecCCCCCccceEEEEE
Q 000177 1793 ITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1793 Ve~dds~d~dSsVRLyE 1809 (1922)
.. .|+.+++|+
T Consensus 330 ~s------~D~~i~iWd 340 (340)
T 1got_B 330 GS------WDSFLKIWN 340 (340)
T ss_dssp EE------TTSCEEEEC
T ss_pred Ec------CCccEEecC
Confidence 53 457899984
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=293.42 Aligned_cols=270 Identities=16% Similarity=0.192 Sum_probs=231.1
Q ss_pred eEEecCCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCc--eeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1501 WRTCRDDAGALLTCITFLGD----SSHIAVGSHTKELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPD----G~lLASGS~DGtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
.+.+++|. +.|++++|+|+ +.+|+||+.|++|+||++.+++. ..++.+|...|.++ .|++++.+++++ .|
T Consensus 25 ~~~~~~H~-~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~--~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 25 FKQEQAHD-DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSV--DISHTLPIAASSSLD 101 (321)
T ss_dssp EEETTSSS-SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE--EECSSSSEEEEEETT
T ss_pred eeecccCC-CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEE--EECCCCCEEEEEeCC
Confidence 45667999 99999999984 67999999999999999987654 44679999999999 889999999995 59
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
++|+|||+.+ ++++..+..+ .+++|+|++++|+++ +.|+.|++||+++++....+. .++.....
T Consensus 102 ~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~g---~~dg~v~i~~~~~~~~~~~~~-------~~~~~v~~ 169 (321)
T 3ow8_A 102 AHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPDSQYLATG---THVGKVNIFGVESGKKEYSLD-------TRGKFILS 169 (321)
T ss_dssp SEEEEEETTT--TEEEEEEECCTTCCCCEEECTTSSEEEEE---CTTSEEEEEETTTCSEEEEEE-------CSSSCEEE
T ss_pred CcEEEEECCC--CCEEEEEeCCCccEEEEEECCCCCEEEEE---cCCCcEEEEEcCCCceeEEec-------CCCceEEE
Confidence 9999999988 7777777653 689999999999999 889999999999998887775 12344556
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
++|+|++++|++++ ++||++++++++++.+|...+ +++|+|++++|++++ +|||+++++++.++.+|..
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 99999999999887 999999999999999999888 999999999999998 5999999999999999987
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEec
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~ 1795 (1922)
++++|+|+|.+|++++. +..+++||..+...+.++.. ...|..++|+|++.+|+...
T Consensus 250 ~v~~~~~sp~~~~l~s~s~-------------------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~- 309 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSS-------------------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG- 309 (321)
T ss_dssp CEEEEEECTTSSEEEEEET-------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-
T ss_pred ceEEEEECCCCCEEEEEeC-------------------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe-
Confidence 79999999999999852 34577888888777777654 56799999999999988663
Q ss_pred CCCCCccceEEEEEe
Q 000177 1796 DDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1796 dds~d~dSsVRLyEV 1810 (1922)
.++.+++|+.
T Consensus 310 -----~d~~i~vwd~ 319 (321)
T 3ow8_A 310 -----DDQEIHIYDC 319 (321)
T ss_dssp -----TTCCEEEEEC
T ss_pred -----CCCeEEEEeC
Confidence 3478999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=289.07 Aligned_cols=273 Identities=12% Similarity=0.163 Sum_probs=228.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
+...++|++|. +.|++++|+|++++|++|+.||+|+|||+.++..+.++.+|..+|.++ .|+|++++|+++ .|++|
T Consensus 3 l~~~~~~~~h~-~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 3 LDIKKTFSNRS-DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG--KFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CCCEEEEEEEC-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EEEGGGTEEEEEETTSEE
T ss_pred ceeEEeecCCC-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEE--EEeCCCCEEEEECCCCEE
Confidence 45567899999 999999999999999999999999999999999999999999999999 889999999985 59999
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee-eeeccccccccCCCCcceEEE
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE-AKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i-~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
++||+.+ ++++..+.+| ++++|+|++++|++| +.|++|++||++++... ..+. ++.+.+..++
T Consensus 80 ~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~sg---s~D~~v~lWd~~~~~~~~~~~~-------~h~~~v~~v~ 147 (304)
T 2ynn_A 80 RVFNYNT--GEKVVDFEAHPDYIRSIAVHPTKPYVLSG---SDDLTVKLWNWENNWALEQTFE-------GHEHFVMCVA 147 (304)
T ss_dssp EEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEEEEEGGGTTEEEEEEC-------CCCSCEEEEE
T ss_pred EEEECCC--CcEEEEEeCCCCcEEEEEEcCCCCEEEEE---CCCCeEEEEECCCCcchhhhhc-------ccCCcEEEEE
Confidence 9999998 7888888876 789999999999999 88999999999987443 4443 2334455699
Q ss_pred EcC-CCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEec--CCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1652 FSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHP--AGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1652 FSP-dG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSP--dG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
|+| ++.+|++++ ++||++++.+...+.. +...+ .+.|+| ++.+|++++ +|||+++++++.++.+|
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h 227 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence 999 568888877 9999998887766654 44556 788876 788999999 69999999999999999
Q ss_pred Cc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCce--EE
Q 000177 1717 DQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSF--VG 1791 (1922)
Q Consensus 1717 ~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~--LA 1791 (1922)
.. ++++|+|++.+|++++ .+..+++||..+++.+.++.. ...++.++++|++.. ++
T Consensus 228 ~~~v~~~~~~p~~~~l~s~s-------------------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 228 MSNVSFAVFHPTLPIIISGS-------------------EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEE-------------------TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEE
T ss_pred CCCEEEEEECCCCCEEEEEc-------------------CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEE
Confidence 77 7999999999999985 234578899888888888876 456999999998863 44
Q ss_pred EEecCCCCCccceEEEEEec
Q 000177 1792 LITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1792 VVe~dds~d~dSsVRLyEVG 1811 (1922)
.. .+..+.+|.++
T Consensus 289 sg-------~~~g~~~~~~~ 301 (304)
T 2ynn_A 289 SG-------FDNGFTVLSLG 301 (304)
T ss_dssp EE-------ETTEEEEEECC
T ss_pred Ee-------cCCceEEEEec
Confidence 33 12346677664
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=290.79 Aligned_cols=271 Identities=16% Similarity=0.241 Sum_probs=228.6
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
+..++|++|. +.|+|++|+|++++|+||+.||+|+|||..+++....+..|...|.++ .|+|++.+|+++ .|++++
T Consensus 55 ~~~~~l~gH~-~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~--~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHG-NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMAC--AYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEE--EECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCC-CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEE--EECCCCCEEEEeeCCCCEE
Confidence 5567899999 999999999999999999999999999999999999999999999999 899999999996 499999
Q ss_pred EeccCCCC----CCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--c
Q 000177 1578 LWNASSIA----GGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--Y 1647 (1922)
Q Consensus 1578 LWDl~t~~----gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~ 1647 (1922)
+|++.... ......+.+| .++.|+|++..|+++ +.|++|++||+++++++.++. +|. +
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~D~~v~lwd~~~~~~~~~~~---------~h~~~v 199 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA---SGDGTCALWDVESGQLLQSFH---------GHGADV 199 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEEE---------CCSSCE
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE---eCCCcEEEEeCCCCeEEEEEc---------CCCCCe
Confidence 99986411 1223444444 789999999999999 889999999999999988886 454 4
Q ss_pred eEEEEcC--CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1648 SQIHFSP--SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1648 ~vVaFSP--dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
.+++|+| ++++|++++ ++||+++++++..+.+|...+ +++|+|+|.+|++++ ++||+++++.+..+.
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 4578877 568999877 999999999999999999988 999999999999999 699999998887776
Q ss_pred CCC----ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCce
Q 000177 1715 SLD----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSF 1789 (1922)
Q Consensus 1715 gH~----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~ 1789 (1922)
.+. ..+++|+|+|.+|+++..+ ..+++||..+...+.++.. ...|..++|+|++.+
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d-------------------~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 340 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYND-------------------YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA 340 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETT-------------------SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSC
T ss_pred CCCcccceeEEEEeCCCCEEEEEECC-------------------CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCE
Confidence 443 2799999999999998532 3467777777666666644 456999999999999
Q ss_pred EEEEecCCCCCccceEEEEE
Q 000177 1790 VGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyE 1809 (1922)
|+... .|+.+++|+
T Consensus 341 l~sgs------~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGS------WDHTLRVWA 354 (354)
T ss_dssp EEEEE------TTSEEEEEC
T ss_pred EEEEc------CCCCEEecC
Confidence 98653 457899984
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=288.24 Aligned_cols=270 Identities=15% Similarity=0.211 Sum_probs=218.8
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-----CceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSS-----SPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tg-----k~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
+....+|++|. +.|++++|+|++ ++|+||+.|++|++|++... .++.++.+|...|+++ .|+|++++|+++
T Consensus 7 ~~l~~~l~gH~-~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~--~~s~dg~~l~s~ 83 (319)
T 3frx_A 7 LVLRGTLEGHN-GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC--TLTADGAYALSA 83 (319)
T ss_dssp EEEEEEECCCS-SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEE--EECTTSSEEEEE
T ss_pred EEEEEEEcccc-ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEE--EECCCCCEEEEE
Confidence 45567899999 999999999965 89999999999999998643 3467889999999999 899999999995
Q ss_pred -cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.|++|+|||+.+ ++++..+.+| .+++|+|++++|+++ +.|++|++||++ ++++.++. +|.
T Consensus 84 s~D~~v~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~D~~i~vwd~~-~~~~~~~~---------~h~ 148 (319)
T 3frx_A 84 SWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDKKASMIISG---SRDKTIKVWTIK-GQCLATLL---------GHN 148 (319)
T ss_dssp ETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSCEEEEE---ETTSCEEEEETT-SCEEEEEC---------CCS
T ss_pred eCCCEEEEEECCC--CCeeEEEccCCCcEEEEEEcCCCCEEEEE---eCCCeEEEEECC-CCeEEEEe---------ccC
Confidence 599999999998 7888888775 789999999999999 889999999997 45555554 444
Q ss_pred c--eEEEEcCCC------CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC
Q 000177 1647 Y--SQIHFSPSD------TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1647 ~--~vVaFSPdG------~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg 1707 (1922)
. ..+.|+|.+ .++++++ ++||+++++....+.+|...+ +++|+|+|++|++++ +|||+.++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 4 448898854 4788777 999999999999999999999 999999999999998 59999999
Q ss_pred eEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee---------ccCCc
Q 000177 1708 RLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI---------PVDRC 1777 (1922)
Q Consensus 1708 klL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi---------dvkr~ 1777 (1922)
+++.++..+.. .+++|+|+|.+++++.... +++|+......+..+ .....
T Consensus 229 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~--------------------i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 229 KAMYTLSAQDEVFSLAFSPNRYWLAAATATG--------------------IKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp EEEEEEECCSCEEEEEECSSSSEEEEEETTE--------------------EEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred cEEEEecCCCcEEEEEEcCCCCEEEEEcCCC--------------------cEEEEeCcCeeeeccCccccccccCcCcc
Confidence 99999987665 8999999999999884321 222222211111111 12446
Q ss_pred eEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+..++|+|+|++|+... .+..+++|++.
T Consensus 289 v~~~~~spdg~~l~sg~------~Dg~i~vWd~~ 316 (319)
T 3frx_A 289 AVSLAWSADGQTLFAGY------TDNVIRVWQVM 316 (319)
T ss_dssp EEEEEECTTSSEEEEEE------TTSCEEEEEEE
T ss_pred eeEEEECCCCCEEEEee------cCceEEEEEEe
Confidence 88999999999998653 35789999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=295.01 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=229.8
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..+...++|++|. +.|++++|+|++++|+||+.||+|+|||+.+++...++.+|...|.++ +|+|++++|+++ .|+
T Consensus 54 ~~~~~~~~l~gH~-~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~--~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 54 TDLVCCRTLQGHS-GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC--AFAPNGQSVACGGLDS 130 (380)
T ss_dssp CCCEEEEEECCCS-SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCC--EECTTSSEEEECCSSS
T ss_pred ceeEEeecccccc-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEE--EECCCCCEEEEeeCCC
Confidence 3456678899999 999999999999999999999999999999999999999999999999 899999999995 599
Q ss_pred cEEEeccCCCC-----CCcceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1575 DVHLWNASSIA-----GGPMHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1575 tVkLWDl~t~~-----gk~l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
.|++||+.+.. ......+.+| .++.|+|+ +..|++| +.|++|++||+++++++..+.... ..+
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~---s~D~~i~~wd~~~~~~~~~~~~~~----~~~ 203 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG---SGDQTCVLWDVTTGQRISIFGSEF----PSG 203 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE---CTTSCEEEECTTTCCEEEEECCCS----SSS
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE---CCCCcEEEEEcCCCcEEEEeeccc----CCC
Confidence 99999996511 1223455565 67889996 4578998 899999999999999888774111 124
Q ss_pred Ccc--eEEEEcC-CCCeEeecc-----EEEEcC-CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeE
Q 000177 1645 HAY--SQIHFSP-SDTMLLWNG-----ILWDRR-NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1645 h~~--~vVaFSP-dG~lLaSgg-----rLWDlr-tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgkl 1709 (1922)
|.. ..++|+| ++++|++++ ++||++ .++++..+.+|...| +++|+|+|++|++++ +|||+++++.
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 444 4488876 788999887 999998 457889999999998 999999999999999 6999999999
Q ss_pred EEEEcCCC---------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec-----cC
Q 000177 1710 LRSVPSLD---------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP-----VD 1775 (1922)
Q Consensus 1710 L~tl~gH~---------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid-----vk 1775 (1922)
+..+..+. .++++|+|+|++|+++..+ ..+++||......+..+. ..
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-------------------g~i~vwd~~~~~~~~~~~~~~~~h~ 344 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-------------------GDCYVWDTLLAEMVLNLGTLQNSHE 344 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-------------------SCEEEEETTTCCEEEEECCSCSSCC
T ss_pred EEEecccccccccccCceEEEEECCCCCEEEEEECC-------------------CCEEEEECCCCceEEEEecccCCCC
Confidence 98887542 2689999999999998532 345666665555544441 24
Q ss_pred CceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCCC
Q 000177 1776 RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1776 r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
..|.+++|+|++.+|+.. ..|+.+++|++...+
T Consensus 345 ~~v~~l~~s~dg~~l~sg------s~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 345 GRISCLGLSSDGSALCTG------SWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCEEEECSSSSEEEEE------CTTSCEEEEECCSSS
T ss_pred CceEEEEECCCCCEEEEe------eCCCCEEEEecCCCc
Confidence 569999999999998865 345789999986543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-28 Score=275.86 Aligned_cols=277 Identities=16% Similarity=0.265 Sum_probs=232.3
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..+....++.+|. +.|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.++ .|+|++++|+++ .|+
T Consensus 11 ~~~~~~~~~~gh~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 11 PNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNLLVSASDDK 87 (312)
T ss_dssp CCCEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTS
T ss_pred CCceeEEEEcccC-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEE--EEcCCCCEEEEECCCC
Confidence 3456677889999 999999999999999999999999999999999999999999999999 889999999985 699
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
+|++||+.+ ++++..+.+| .++.|+|++++|+++ +.|++|++||+++++++..+. .+......+
T Consensus 88 ~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~ 155 (312)
T 4ery_A 88 TLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSG---SFDESVRIWDVKTGKCLKTLP-------AHSDPVSAV 155 (312)
T ss_dssp EEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEE
T ss_pred EEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEE---eCCCcEEEEECCCCEEEEEec-------CCCCcEEEE
Confidence 999999998 7788888765 789999999999999 889999999999999888875 122344559
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+|+|+++++++++ ++||+++++.+..+.. +...+ .++|+|++++|++++ ++||+++++++..+.+|..
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence 9999999999887 9999999998887754 44455 899999999999998 5999999999999988865
Q ss_pred ----eeEEEc-cCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEE
Q 000177 1719 ----TTITFN-ARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGL 1792 (1922)
Q Consensus 1719 ----~sVaFS-PdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAV 1792 (1922)
....|+ +++.+|+++. .+..+++|+..+...+..+.. ...|..++|+|++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~-------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGS-------------------EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECC-------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred ceEEEEEEEEeCCCcEEEEEC-------------------CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence 233444 6788888874 234577788777777777764 456999999999999987
Q ss_pred EecCCCCCccceEEEEEe
Q 000177 1793 ITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1793 Ve~dds~d~dSsVRLyEV 1810 (1922)
... +.+..+++|+.
T Consensus 297 ~~~----~~d~~i~~W~~ 310 (312)
T 4ery_A 297 AAL----ENDKTIKLWKS 310 (312)
T ss_dssp EEC----TTTCCEEEEEC
T ss_pred EEc----cCCccEEEecC
Confidence 642 23578999975
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=277.00 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=211.0
Q ss_pred ceeeEEecCCCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCC
Q 000177 1498 FRPWRTCRDDAGALLTCITF-----LG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaF-----SP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpD 1564 (1922)
+....+|++|. +.|++++| ++ ++++|+||+.|++|+|||+.+. .+...+.+|...|+++ .|+|+
T Consensus 11 ~~~~~~l~gH~-~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~--~~~~~ 87 (343)
T 2xzm_R 11 VVKRGILEGHS-DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDL--ALSQE 87 (343)
T ss_dssp EEEEEEEECCS-SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEE--EECSS
T ss_pred eeeeeeeccch-hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEE--EECCC
Confidence 45577899999 99999999 77 9999999999999999999754 3456789999999999 88999
Q ss_pred CcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccc
Q 000177 1565 TQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVN 1639 (1922)
Q Consensus 1565 G~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~ 1639 (1922)
+.+|+++ .|++|+|||+++ ++++.++.+| ++++|+|++++|+++ +.|++|++||+... ....+. .
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---~~d~~i~~wd~~~~-~~~~~~----~ 157 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRT--GTTYKRFVGHQSEVYSVAFSPDNRQILSA---GAEREIKLWNILGE-CKFSSA----E 157 (343)
T ss_dssp TTEEEEEETTSEEEEEETTS--SCEEEEEECCCSCEEEEEECSSTTEEEEE---ETTSCEEEEESSSC-EEEECC----T
T ss_pred CCEEEEEcCCCcEEEEECCC--CcEEEEEcCCCCcEEEEEECCCCCEEEEE---cCCCEEEEEeccCC-ceeeee----c
Confidence 9999985 599999999998 7788888775 789999999999999 88999999999843 332221 0
Q ss_pred ccCCCCcceEEEEcCCC----------CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----
Q 000177 1640 LTGRGHAYSQIHFSPSD----------TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG----------~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
...+......++|+|++ .++++++ ++|| ..++.+..+.+|...+ +++|+|+|++|++++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 11123344559999987 6788776 9999 4567788899999988 999999999999999
Q ss_pred -EEEecCC-CeEEEEEc-CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceee--ee--
Q 000177 1700 -EVWDLRK-FRLLRSVP-SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA--TI-- 1772 (1922)
Q Consensus 1700 -eIWDLrT-gklL~tl~-gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia--Ti-- 1772 (1922)
+|||+.+ ......+. ++..++++|+|++.+++++. ++. +++|+..+...+. ++
T Consensus 237 v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~-------------------v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQG-------------------VKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-SSC-------------------EEEEESSSCCSCSEEECCC
T ss_pred EEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC-CCC-------------------EEEEEeCCCCCCceEEeec
Confidence 5999954 44445553 44458999999999988763 221 2333332222111 11
Q ss_pred ----------ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1773 ----------PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1773 ----------dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.....|..++|+|++.+|++.. .++.+++|++.
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~------~Dg~v~~w~~~ 339 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGF------TDGVIRTFSFE 339 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE------TTSEEEEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEec------CCceEEEEEEE
Confidence 1234589999999999998653 45789999863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=265.80 Aligned_cols=277 Identities=16% Similarity=0.181 Sum_probs=217.4
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC-----ceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSS-----PLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk-----~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
..++....+|+||. +.|++|+|+|+ +++|+|||.||+|+|||+.+.+ +..++.+|...|+++ .|+|++++|
T Consensus 25 ~~~~~l~~tL~GH~-~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~--~~s~dg~~l 101 (340)
T 4aow_A 25 TEQMTLRGTLKGHN-GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV--VISSDGQFA 101 (340)
T ss_dssp -CEEEEEEEECCCS-SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEE--EECTTSSEE
T ss_pred CCceEEEEEECCcc-CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEE--EECCCCCEE
Confidence 34456677899999 99999999997 6899999999999999997654 456789999999999 889999999
Q ss_pred EEe-cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1569 LSS-SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1569 aSS-sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+++ .|+.|++|+... ......... ...+.+++++++|+++ +.|+.+++||+.......... ..+
T Consensus 102 ~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~d~~~~~~d~~~~~~~~~~~------~~~ 170 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTT--GTTTRRFVGHTKDVLSVAFSSDNRQIVSG---SRDKTIKLWNTLGVCKYTVQD------ESH 170 (340)
T ss_dssp EEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEECTTSCEEEEECS------SSC
T ss_pred EEEcccccceEEeecc--cceeeeecCCCCceeEEEEeecCccceee---cCCCeEEEEEeCCCceEEEEe------ccc
Confidence 995 599999999987 444444333 3678899999999999 889999999998765443322 112
Q ss_pred CCcceEEEEcCCC--CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1644 GHAYSQIHFSPSD--TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1644 gh~~~vVaFSPdG--~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
......++|++++ .++++++ ++||+++++++..+.+|...+ +++|+|+|++|++++ ++||+++.+.+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee
Confidence 3344458888875 4566665 899999999999999999999 999999999999998 59999999999
Q ss_pred EEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec----------cCCceE
Q 000177 1711 RSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP----------VDRCVL 1779 (1922)
Q Consensus 1711 ~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid----------vkr~I~ 1779 (1922)
..+..+.. +++.|+|++.+++++. + ..+++|+......+..+. ....|.
T Consensus 251 ~~~~~~~~v~~~~~~~~~~~~~~~~-d-------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (340)
T 4aow_A 251 YTLDGGDIINALCFSPNRYWLCAAT-G-------------------PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310 (340)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEE-T-------------------TEEEEEETTTTEEEEEECCC-------CCCCCEE
T ss_pred eeecCCceEEeeecCCCCceeeccC-C-------------------CEEEEEECCCCeEEEeccccceeeeccCCCCCEE
Confidence 99987766 8999999998877763 2 224444444333332221 245699
Q ss_pred EEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1780 DFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1780 dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.++|+|++.+|++.. .|+.|++|++.
T Consensus 311 ~l~~s~dg~~l~sgs------~Dg~v~iW~~~ 336 (340)
T 4aow_A 311 SLAWSADGQTLFAGY------TDNLVRVWQVT 336 (340)
T ss_dssp EEEECTTSSEEEEEE------TTSCEEEEEEE
T ss_pred EEEECCCCCEEEEEe------CCCEEEEEeCC
Confidence 999999999998653 34789999874
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=280.46 Aligned_cols=281 Identities=13% Similarity=0.177 Sum_probs=214.5
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee--e-eccCCCCeeEEEeeecCCCcEEEEe-c
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE--S-CTSHQAPVTLVQSHLSGETQLLLSS-S 1572 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~--t-L~gHss~VtsLq~afSpDG~lLaSS-s 1572 (1922)
.+..+++|++|.++.|++++|+|+|++|++|+.|++|+|||+.++.... . ..+|...|+++ +|+|++++|+++ .
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~--~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV--AWSPCGNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEE--EECTTSSEEEEEET
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEE--EECCCCCEEEEEEC
Confidence 3566788999983499999999999999999999999999998776432 2 37899999999 899999999995 5
Q ss_pred CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce---eeeeccccccccCCCC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL---EAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~---i~tL~d~s~~~~~~gh 1645 (1922)
|++|+|||+......++.++.+| ++++|+|++++|+++ +.|++|++||+.++.. +..+. .+..
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---s~D~~v~iwd~~~~~~~~~~~~~~-------~h~~ 151 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC---SRDKSVWVWEVDEEDEYECVSVLN-------SHTQ 151 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEEECTTSCEEEEEEEC-------CCCS
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEE---ECCCeEEEEECCCCCCeEEEEEec-------CcCC
Confidence 99999999986323456777765 789999999999999 8899999999987643 33332 1223
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCc--ceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC------
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSV--PVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK------ 1706 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk--~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT------ 1706 (1922)
.+..++|+|++++|++++ ++||+++++ ++.++.+|...| +++|+|+|++|++++ +|||...
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 345599999999999887 999999875 567889999999 999999999999999 5999732
Q ss_pred ---------CeEEEEEcC-CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCC--------
Q 000177 1707 ---------FRLLRSVPS-LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINY-------- 1766 (1922)
Q Consensus 1707 ---------gklL~tl~g-H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dy-------- 1766 (1922)
.+++.++.+ |.. ++++|+|++..|+++..+... ++|+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i-------------------~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI-------------------RVFQEDPNSDPQQPTF 292 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE-------------------EEEEECTTSCTTSCCE
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE-------------------EEEEeCCCCCcceeeE
Confidence 245566665 443 799999999999998654432 33322111
Q ss_pred ceeeee--ccCCceEEEEEcCCCc-eEEEEecCCCCCccceEEEEEecCCC
Q 000177 1767 SDIATI--PVDRCVLDFATERTDS-FVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1767 s~IaTi--dvkr~I~dLa~SPdds-~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
...... .....|..++|+|++. +++... .|+.|++|++...+
T Consensus 293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s------~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCS------DDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEETTSSSSCEEEEEECSSSTTEEEEEE------TTSCEEEEEECC--
T ss_pred EEEeeecccccCcEeEeEEeCCCceEEEEcC------CCCcEEEEEecCCC
Confidence 011111 1245699999999985 666542 45789999986554
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=278.08 Aligned_cols=240 Identities=15% Similarity=0.224 Sum_probs=210.1
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEee
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~a 1560 (1922)
.|+.++..+.|.+...+.....++.+|. ..|++++|++++.++++|+.|++|+|||+.+++.+..+..|...|.++ .
T Consensus 53 tgs~D~~v~vW~~~~~~~~~~~~l~gh~-~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~--~ 129 (321)
T 3ow8_A 53 TGSLDDLVKVWKWRDERLDLQWSLEGHQ-LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL--A 129 (321)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCE--E
T ss_pred EEcCCCCEEEEECCCCCeeeeeeeccCC-CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEE--E
Confidence 3455555555555444445566789999 999999999999999999999999999999999999999999999999 8
Q ss_pred ecCCCcEEEEec-CCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1561 LSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1561 fSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
|+|++++|++++ |++|++||+.+ ++....+.. +.+++|+|++++|+++ +.|+.|++||+++++.+.++.
T Consensus 130 ~spdg~~l~~g~~dg~v~i~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~lasg---~~dg~i~iwd~~~~~~~~~~~- 203 (321)
T 3ow8_A 130 FSPDSQYLATGTHVGKVNIFGVES--GKKEYSLDTRGKFILSIAYSPDGKYLASG---AIDGIINIFDIATGKLLHTLE- 203 (321)
T ss_dssp ECTTSSEEEEECTTSEEEEEETTT--CSEEEEEECSSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEEEEC-
T ss_pred ECCCCCEEEEEcCCCcEEEEEcCC--CceeEEecCCCceEEEEEECCCCCEEEEE---cCCCeEEEEECCCCcEEEEEc-
Confidence 999999999964 99999999988 666766655 3789999999999999 889999999999999988885
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEec
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
.+...+..++|+|++++|++++ ++||+++++.+.++.+|...+ +++|+|+|.+|++++ +|||+
T Consensus 204 ------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 204 ------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp ------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 1223455699999999999887 999999999999999999988 999999999999999 69999
Q ss_pred CCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1705 RKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1705 rTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
++++++.++.+|.. ++++|+|+|.+|+++..
T Consensus 278 ~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 99999999998876 89999999999999863
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-28 Score=284.62 Aligned_cols=271 Identities=15% Similarity=0.176 Sum_probs=207.9
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCCcee----eeccCCCCeeEEEeeecCCCcEEEEec
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSH------TKELKIFDSNSSSPLE----SCTSHQAPVTLVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~------DGtIkIWDl~tgk~l~----tL~gHss~VtsLq~afSpDG~lLaSSs 1572 (1922)
....|. ..|++++|||||++|++|+. |++|++|+..++.... ...+|...|+++ +|+|++++|+++.
T Consensus 37 ~p~~H~-~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~s~d~~~l~~s~ 113 (357)
T 4g56_B 37 APACME-VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDV--AWVSEKGILVASD 113 (357)
T ss_dssp ---CCC-SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEE--EEETTTEEEEEET
T ss_pred Cccccc-CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEE--EEcCCCCEEEEEC
Confidence 345698 99999999999999999997 7889999988775433 346799999999 8899999998899
Q ss_pred CCcEEEeccCCCCCCcc--e--Eecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1573 SQDVHLWNASSIAGGPM--H--SFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l--~--tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
|++|+|||+.+ ++.+ . ...+ +++++|+|++++|+++ +.|++|++||+++++++..+. .+.
T Consensus 114 dg~v~lWd~~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg---s~dg~v~iwd~~~~~~~~~~~-------~h~ 181 (357)
T 4g56_B 114 SGAVELWEILE--KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG---GKDFSVKVWDLSQKAVLKSYN-------AHS 181 (357)
T ss_dssp TSCEEEC----------CCCCEEECCCSSCEEEEEECSSSSEEEEE---ETTSCEEEEETTTTEEEEEEC-------CCS
T ss_pred CCEEEEeeccc--cceeEEEeeccCCCCCCEEEEEECCCCCEEEEE---eCCCeEEEEECCCCcEEEEEc-------CCC
Confidence 99999999987 4332 2 2223 4889999999999999 889999999999999988885 122
Q ss_pred CcceEEEEcCCCC-eEeecc-----EEEEcCCCcceeeecc--CCCce-EEEEecCC-CEEEEEe-----EEEecCCCeE
Q 000177 1645 HAYSQIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQ--FTDHG-GGGFHPAG-NEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1645 h~~~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~g--h~~~V-sVaFSPdG-~~LASGS-----eIWDLrTgkl 1709 (1922)
..+..++|+|++. ++++++ ++||+++++++..+.. +...+ +++|+|++ .+|++|+ ++||++++++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 3344599999985 566665 9999999988776543 44455 89999984 6788887 5999999999
Q ss_pred EEEEcCCCc--eeEEEccCC-CEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC-
Q 000177 1710 LRSVPSLDQ--TTITFNARG-DVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER- 1785 (1922)
Q Consensus 1710 L~tl~gH~~--~sVaFSPdG-~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP- 1785 (1922)
++++.+|.. ++++|+|+| ++|++++. +..+++||..+.+.+........|.+++|+|
T Consensus 262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~-------------------D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~ 322 (357)
T 4g56_B 262 AQTSAVHSQNITGLAYSYHSSPFLASISE-------------------DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPL 322 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSCCEEEEET-------------------TSCEEEECTTSCEEEEECCCSSCEEEEEECSS
T ss_pred eEEEeccceeEEEEEEcCCCCCEEEEEeC-------------------CCEEEEEECCCCcEeEECCCCCCEEEEEEeCC
Confidence 999998876 899999998 56777742 2457788877777777666677899999999
Q ss_pred CCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1786 TDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1786 dds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
++.+|+... .|..|++|++...
T Consensus 323 d~~~l~s~s------~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 323 DHSKFTTVG------WDHKVLHHHLPSE 344 (357)
T ss_dssp STTEEEEEE------TTSCEEEEECC--
T ss_pred CCCEEEEEc------CCCeEEEEECCCC
Confidence 677877653 4578999998543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=288.08 Aligned_cols=230 Identities=18% Similarity=0.326 Sum_probs=206.4
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
.|.+...+..+++++|. +.|++++|+|+|++|++|+.||+|+|||+.+++++.++.+|...|+++ .|+|++.+|+++
T Consensus 134 vwd~~~~~~~~~l~~h~-~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v--~~~p~~~~l~s~ 210 (410)
T 1vyh_C 134 VWDYETGDFERTLKGHT-DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV--SIMPNGDHIVSA 210 (410)
T ss_dssp EEETTTCCCCEEECCCS-SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE--EECSSSSEEEEE
T ss_pred EEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE--EEeCCCCEEEEE
Confidence 34456677788999999 999999999999999999999999999999999999999999999999 899999999885
Q ss_pred -cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.|++|++||+.+ +.++.++.+| .++.|+|++++|+++ +.|++|++||+.++++...+. .+.+.
T Consensus 211 s~D~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~g~~l~s~---s~D~~v~vwd~~~~~~~~~~~-------~h~~~ 278 (410)
T 1vyh_C 211 SRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTLIASC---SNDQTVRVWVVATKECKAELR-------EHRHV 278 (410)
T ss_dssp ETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCCEEEEEC-------CCSSC
T ss_pred eCCCeEEEEECCC--CcEEEEEeCCCccEEEEEECCCCCEEEEE---cCCCeEEEEECCCCceeeEec-------CCCce
Confidence 599999999998 7888888875 779999999999999 889999999999999888775 23445
Q ss_pred ceEEEEcCC--------------------CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-
Q 000177 1647 YSQIHFSPS--------------------DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS- 1699 (1922)
Q Consensus 1647 ~~vVaFSPd--------------------G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS- 1699 (1922)
+..++|+|+ |.+|++++ ++||+++++++.++.+|...+ +++|+|+|++|++++
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 358 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC
Confidence 566999996 66788877 999999999999999999998 999999999999998
Q ss_pred ----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1700 ----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1700 ----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
++||+.+++++.++.+|.. ++++|+|++.+|++++.+
T Consensus 359 D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D 401 (410)
T 1vyh_C 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401 (410)
T ss_dssp TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 5999999999999999876 899999999999998643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-26 Score=263.11 Aligned_cols=297 Identities=15% Similarity=0.130 Sum_probs=235.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
+.....|.+|. +.|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|+++ .|+|++++|+++ .|++|
T Consensus 22 ~~~~~~l~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 22 HMKAIKLTGHE-RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI--DVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp SEEEEEEECCS-SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTTEE
T ss_pred ccccEEEEEee-ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEE--EEcCCCCEEEEEeCCCeE
Confidence 33455688999 999999999999999999999999999999999999999999999999 889999999985 69999
Q ss_pred EEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCC-----CeEEEEECCCCceeeeecccc----ccccCCC
Q 000177 1577 HLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSD-----RGILLYDIQTYQLEAKLSDTS----VNLTGRG 1644 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~D-----gtIrIWDlrTgk~i~tL~d~s----~~~~~~g 1644 (1922)
++||+.+ ++++..+.. +.++.|+|++++|+++ +.+ +.|++||+.++.....+.... .....+.
T Consensus 99 ~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 99 KLWDVSN--GQCVATWKSPVPVKRVEFSPCGNYFLAI---LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEEETTT--CCEEEEEECSSCEEEEEECTTSSEEEEE---ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEEECCC--CcEEEEeecCCCeEEEEEccCCCEEEEe---cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 9999998 777776653 4889999999999998 566 999999998775433322100 0001111
Q ss_pred C--cceEEEEcCCCCeEeecc-----EEEEcCC-CcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1645 H--AYSQIHFSPSDTMLLWNG-----ILWDRRN-SVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1645 h--~~~vVaFSPdG~lLaSgg-----rLWDlrt-gk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
. ....++|+|++++|++++ ++||+++ ++.+..+..|...+ +++|+|++++|++++ .+||+++++.+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 2 455599999999999876 8999998 78899999999888 999999999999998 59999999999
Q ss_pred EEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCc
Q 000177 1711 RSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDS 1788 (1922)
Q Consensus 1711 ~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds 1788 (1922)
..+..... ..+.|+|++.+++++...+...++... .......+++|+..+...+..+.. ...|..++|+|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 254 KKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTS-----ANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEECCC------------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eeecCCCCceeEEecCCCceEEEeecCCCceEEEEe-----cCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC
Confidence 98884433 899999999999998655433322100 001123678899888888877764 56799999999999
Q ss_pred eEEEEecCCCCCccceEEEEEecCC
Q 000177 1789 FVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
++++.. .++.+++|++...
T Consensus 329 ~l~s~~------~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 329 SYASGG------EDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEEE------TTSEEEEEEECHH
T ss_pred EEEEEc------CCCeEEEEECccc
Confidence 988763 3478999998543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-27 Score=299.30 Aligned_cols=274 Identities=20% Similarity=0.221 Sum_probs=217.6
Q ss_pred eeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCC-----ceeeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSS-----PLESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk-----~l~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
+....+++|. +.|++|+|+|++ ++|+||+.|++|+|||+.+.. ....+.+|...|+++ +|+|++++|+++
T Consensus 373 ~~~~~l~~H~-~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v--~~s~~g~~l~sgs 449 (694)
T 3dm0_A 373 VLKGTMRAHT-DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV--VLSSDGQFALSGS 449 (694)
T ss_dssp EEEEEEECCS-SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEE--EECTTSSEEEEEE
T ss_pred chhhhcccCC-ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEE--EECCCCCEEEEEe
Confidence 4456789999 999999999864 799999999999999997643 356789999999999 899999999995
Q ss_pred cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA- 1646 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~- 1646 (1922)
.|++|+|||+.+ +.++..+.+| ++++|+|++++|+++ +.|++|++||+.......... ...+|.
T Consensus 450 ~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---s~D~~i~iwd~~~~~~~~~~~------~~~~h~~ 518 (694)
T 3dm0_A 450 WDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNTLGECKYTISE------GGEGHRD 518 (694)
T ss_dssp TTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEECTTSCEEEEECS------STTSCSS
T ss_pred CCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCCCCEEEEE---eCCCEEEEEECCCCcceeecc------CCCCCCC
Confidence 599999999988 7778888776 789999999999999 889999999987544332221 112444
Q ss_pred -ceEEEEcCCC--CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE
Q 000177 1647 -YSQIHFSPSD--TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1647 -~~vVaFSPdG--~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t 1712 (1922)
+.+++|+|++ .++++++ ++||+++++++..+.+|...+ +++|+|+|++|++++ +|||+++++.+.+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~ 598 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 5559999987 5677776 999999999999999999999 999999999999998 5999999999988
Q ss_pred EcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-----------------
Q 000177 1713 VPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV----------------- 1774 (1922)
Q Consensus 1713 l~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv----------------- 1774 (1922)
+..+.. ++++|+|++.+++++.. + .+++||..+...+..+..
T Consensus 599 ~~~~~~v~~~~~sp~~~~l~~~~~-~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 599 LEANSVIHALCFSPNRYWLCAATE-H-------------------GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp CBCSSCEEEEEECSSSSEEEEEET-T-------------------EEEEEETTTTEEEEEECCCCC--------------
T ss_pred ecCCCcEEEEEEcCCCcEEEEEcC-C-------------------CEEEEECCCCCChhhhccccccccccccccccccC
Confidence 876554 89999999999988742 2 133344333333222211
Q ss_pred ---CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1775 ---DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1775 ---kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
...+..++|+|++.+|++.. .|+.|++|++++
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs------~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGY------TDGVIRVWGIGR 693 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEE------TTSEEEEEEC--
T ss_pred CceeEEeeeEEEcCCCCEEEEEc------CCCeEEEEeccC
Confidence 11367899999999998653 457899999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=276.75 Aligned_cols=266 Identities=16% Similarity=0.262 Sum_probs=218.1
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCC------------------CeeEEEeeecCCCcE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQA------------------PVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss------------------~VtsLq~afSpDG~l 1567 (1922)
+|. +.|+|++|+|||++|++|+ +++++||++.+++.+..+..|.. .|+++ +|+|++++
T Consensus 62 ~h~-~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~s~dg~~ 137 (393)
T 1erj_A 62 DHT-SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV--CFSPDGKF 137 (393)
T ss_dssp ECS-SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEE--EECTTSSE
T ss_pred CCC-CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEE--EECCCCCE
Confidence 698 9999999999999999987 68999999999998888866542 48899 89999999
Q ss_pred EEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1568 LLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1568 LaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
|+++ .|++|+|||+.+ ++++..+.+| ++++|+|++++|+++ +.|++|++||++++++..++.
T Consensus 138 l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~v~iwd~~~~~~~~~~~-------- 204 (393)
T 1erj_A 138 LATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRTVRIWDLRTGQCSLTLS-------- 204 (393)
T ss_dssp EEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTTEEEEEEE--------
T ss_pred EEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCCCCEEEEe---cCCCcEEEEECCCCeeEEEEE--------
Confidence 9995 599999999987 7777888775 789999999999999 889999999999999887775
Q ss_pred CCCcceEEEEcC-CCCeEeecc-----EEEEcCCCcceeee-------ccCCCce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1643 RGHAYSQIHFSP-SDTMLLWNG-----ILWDRRNSVPVHRF-------DQFTDHG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1643 ~gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtgk~I~kf-------~gh~~~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
.......++|+| ++++|++++ ++||+++++.+..+ .+|...+ +++|+|+|++|++++ ++||
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 234455699999 889999877 89999999888777 5677788 999999999999998 5999
Q ss_pred cCCC------------eEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee
Q 000177 1704 LRKF------------RLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI 1769 (1922)
Q Consensus 1704 LrTg------------klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I 1769 (1922)
+++. .+..++.+|.. .+++|+|++.+|++++. +..+++||..+...+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-------------------D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-------------------DRGVLFWDKKSGNPL 345 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-------------------TSEEEEEETTTCCEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-------------------CCeEEEEECCCCeEE
Confidence 9763 45567778876 79999999999999853 345677887777777
Q ss_pred eeecc-CCceEEEEEcC------CCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1770 ATIPV-DRCVLDFATER------TDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1770 aTidv-kr~I~dLa~SP------dds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.++.. ...|..++|++ ++.+++... .|..+++|++...
T Consensus 346 ~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs------~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 346 LMLQGHRNSVISVAVANGSSLGPEYNVFATGS------GDCKARIWKYKKI 390 (393)
T ss_dssp EEEECCSSCEEEEEECSSCTTCTTCEEEEEEE------TTSEEEEEEEEEC
T ss_pred EEECCCCCCEEEEEecCCcCcCCCCCEEEEEC------CCCcEEECccccc
Confidence 77765 45699999876 567777542 4578999998654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=292.39 Aligned_cols=285 Identities=15% Similarity=0.214 Sum_probs=215.8
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
++.......++.+|. ..|++++|+|++. +|++|+.|++|++||..++++..++.+|...|+++ +|+|++++|+++
T Consensus 133 ~wd~~~~~~~l~gh~-~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v--~fspdg~~las~s 209 (611)
T 1nr0_A 133 LFDTGTSNGNLTGQA-RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV--RYNPDGSLFASTG 209 (611)
T ss_dssp ETTTCCBCBCCCCCS-SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE--EECTTSSEEEEEE
T ss_pred EeeCCCCcceecCCC-CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEE--EECCCCCEEEEEE
Confidence 344556677889999 9999999999987 69999999999999999999999999999999999 899999999995
Q ss_pred cCCcEEEeccCCCCCCcceEec-------cc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc---
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFE-------GC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS--- 1637 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~-------gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s--- 1637 (1922)
.|++|+|||+.+ ++++..+. +| ++++|+|++++|+++ +.|++|++||+.+++++.++....
T Consensus 210 ~D~~i~lwd~~~--g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~---s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 210 GDGTIVLYNGVD--GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp TTSCEEEEETTT--CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred CCCcEEEEECCC--CcEeeeeccccccccccCCCEEEEEECCCCCEEEEE---eCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 699999999987 67776663 44 789999999999999 889999999999998877664110
Q ss_pred -------------------------------ccccCCCCcc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeee-c
Q 000177 1638 -------------------------------VNLTGRGHAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRF-D 1678 (1922)
Q Consensus 1638 -------------------------------~~~~~~gh~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf-~ 1678 (1922)
......+|.. ..++|+|+|++|++++ ++||+.++++...+ .
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~ 364 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 364 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc
Confidence 0001124544 4499999999999887 99999877554332 1
Q ss_pred cC------------------------------------------------------------------------------
Q 000177 1679 QF------------------------------------------------------------------------------ 1680 (1922)
Q Consensus 1679 gh------------------------------------------------------------------------------ 1680 (1922)
+|
T Consensus 365 ~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~ 444 (611)
T 1nr0_A 365 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 444 (611)
T ss_dssp SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence 11
Q ss_pred ---CCce-EEEEecCCCEEEEEe-----EEEecCCCeE--EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcc
Q 000177 1681 ---TDHG-GGGFHPAGNEVIINS-----EVWDLRKFRL--LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1681 ---~~~V-sVaFSPdG~~LASGS-----eIWDLrTgkl--L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~ 1747 (1922)
...+ +++|+|+|++|++|+ ++||+.++.+ +.+ .+|.. ++++|||+|++|+++..+.
T Consensus 445 ~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~---------- 513 (611)
T 1nr0_A 445 VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR---------- 513 (611)
T ss_dssp EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCC----------
Confidence 1123 678888888888888 5888876643 233 45554 7888888888888875332
Q ss_pred cccccCCcceEEEEecCC-Cceeee--ec-cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1748 RRVKHPLFAAFRTVDAIN-YSDIAT--IP-VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1748 rr~ksp~~ssFrt~Da~d-ys~IaT--id-vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
.+++|+..+ ...+.+ .. ....|.+++|+|++++|+... .|..|++|++..
T Consensus 514 ---------~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs------~D~~v~lW~~~~ 567 (611)
T 1nr0_A 514 ---------KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS------LDNSVIVWNMNK 567 (611)
T ss_dssp ---------CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTC
T ss_pred ---------CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE------CCCcEEEEECCC
Confidence 345555444 333222 12 355799999999999999653 457899999743
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=276.02 Aligned_cols=265 Identities=14% Similarity=0.135 Sum_probs=202.7
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CCceeeeccCCCCeeEEEeeecCCCcEEEEecCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-----------SSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-----------gk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDg 1574 (1922)
.|. ..|.+++|+|||++|++++ |+++++||... .........|...|+++ +|+|++.+++++.|+
T Consensus 28 ~~~-~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~d~~l~~~s~dg 103 (344)
T 4gqb_B 28 CME-RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADL--TWVGERGILVASDSG 103 (344)
T ss_dssp SCC-SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEE--EEETTTEEEEEETTS
T ss_pred ccc-CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEE--EEeCCCeEEEEECCC
Confidence 455 7799999999999999888 77888887321 11112223467889999 889998877778899
Q ss_pred cEEEeccCCCCCCcceEe----ccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1575 DVHLWNASSIAGGPMHSF----EGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf----~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+|+|||+.+ ++++..+ .+| ++++|+|+|++|++| +.|++|++||+.+++++.++. +|.
T Consensus 104 ~v~lWd~~~--~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg---s~d~~i~iwd~~~~~~~~~~~---------~h~ 169 (344)
T 4gqb_B 104 AVELWELDE--NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG---SKDICIKVWDLAQQVVLSSYR---------AHA 169 (344)
T ss_dssp EEEEEEECT--TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEEEEC---------CCS
T ss_pred EEEEEeccC--CCceeEeeccccCCCCCEEEEEECCCCCEEEEE---eCCCeEEEEECCCCcEEEEEc---------CcC
Confidence 999999988 5555433 243 889999999999999 889999999999999998886 555
Q ss_pred c--eEEEEcCCCC-eEeecc-----EEEEcCCCcceeeeccC--CCce-EEEEecC-CCEEEEEe-----EEEecCCCeE
Q 000177 1647 Y--SQIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQF--TDHG-GGGFHPA-GNEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1647 ~--~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~gh--~~~V-sVaFSPd-G~~LASGS-----eIWDLrTgkl 1709 (1922)
. ..++|+|++. ++++++ ++||+++++++..+..+ ...+ +++|+|+ +++|++|+ +|||++++++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence 4 4599999985 667766 99999999998887543 3344 8999995 56888887 5999999999
Q ss_pred EEEEcCCCc--eeEEEccCC-CEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1710 LRSVPSLDQ--TTITFNARG-DVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1710 L~tl~gH~~--~sVaFSPdG-~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
+.++.+|.. ++++|+|+| ++|++++. +..+++||..+.+.+........|.+++|+|+
T Consensus 250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~-------------------D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 250 VLSSAVHSQCVTGLVFSPHSVPFLASLSE-------------------DCSLAVLDSSLSELFRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp CEEEECCSSCEEEEEECSSSSCCEEEEET-------------------TSCEEEECTTCCEEEEECCCSSCEEEEEECSS
T ss_pred EEEEcCCCCCEEEEEEccCCCeEEEEEeC-------------------CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC
Confidence 999999987 799999998 57787752 23467777766665544445667999999999
Q ss_pred CceEEEEecCCCCCccceEEEEEecC
Q 000177 1787 DSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1787 ds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+..+.+.. ..|..|++|.+..
T Consensus 311 ~~~llas~-----s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 311 NHSLLTTV-----GWDHQVVHHVVPT 331 (344)
T ss_dssp STTEEEEE-----ETTSCEEEEECCC
T ss_pred CCeEEEEE-----cCCCeEEEEECCC
Confidence 87654332 2357899998853
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=266.49 Aligned_cols=229 Identities=17% Similarity=0.305 Sum_probs=197.7
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
-|.+.....++++..|. ..|++++|+|++++|++|+.|++|+|||+.+++++..+.+|...|+++ +|+|++++|+++
T Consensus 39 lWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~sg 115 (304)
T 2ynn_A 39 LWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI--AVHPTKPYVLSG 115 (304)
T ss_dssp EEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSSSEEEEE
T ss_pred EEECCCCceeEEeeccC-CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE--EEcCCCCEEEEE
Confidence 34456677888999999 999999999999999999999999999999999999999999999999 899999999995
Q ss_pred -cCCcEEEeccCCCCC-CcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1572 -SSQDVHLWNASSIAG-GPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~g-k~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
.|++|++||+.+ + .+...+.+| .+++|+| ++.+|++| +.|++|++||++++.....+. ..+.
T Consensus 116 s~D~~v~lWd~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg---s~D~~v~iwd~~~~~~~~~~~------~~~~ 184 (304)
T 2ynn_A 116 SDDLTVKLWNWEN--NWALEQTFEGHEHFVMCVAFNPKDPSTFASG---CLDRTVKVWSLGQSTPNFTLT------TGQE 184 (304)
T ss_dssp ETTSCEEEEEGGG--TTEEEEEECCCCSCEEEEEECTTCTTEEEEE---ETTSEEEEEETTCSSCSEEEE------CCCT
T ss_pred CCCCeEEEEECCC--CcchhhhhcccCCcEEEEEECCCCCCEEEEE---eCCCeEEEEECCCCCccceec------cCCc
Confidence 599999999987 4 344567665 7899999 67899999 889999999999887766654 1123
Q ss_pred CcceEEEEcC--CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1645 HAYSQIHFSP--SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1645 h~~~vVaFSP--dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
.....+.|+| ++.+|++++ ++||+++++++.++.+|...+ +++|+|++.+|++++ +|||+.++++++
T Consensus 185 ~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 3455588876 778999887 999999999999999999999 899999999999999 699999999999
Q ss_pred EEcCCCc--eeEEEccCCC--EEEEEE
Q 000177 1712 SVPSLDQ--TTITFNARGD--VIYAIL 1734 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~--~LaSgs 1734 (1922)
++..|.. ++++|+|+|. ++++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 265 TLNVGLERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp EECCSSSSEEEEEECTTCGGGCEEEEE
T ss_pred eccCCCccEEEEEECCCCCceEEEEec
Confidence 9998765 7999999885 566664
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=284.65 Aligned_cols=274 Identities=11% Similarity=0.244 Sum_probs=219.3
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEec
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSSs 1572 (1922)
........+|.+|. +.|++++|+|+|++||+|+.||+|+|||+.+++ ...++.+|..+|+++ +|+|++++|++++
T Consensus 46 ~~~~~~~~~~~~h~-~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v--~fs~dg~~l~~~~ 122 (611)
T 1nr0_A 46 VGSLTDTEIYTEHS-HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI--SWDSESKRIAAVG 122 (611)
T ss_dssp TTCSSCCEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEE--EECTTSCEEEEEE
T ss_pred CCCcccCeEecCCC-CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEE--EECCCCCEEEEEE
Confidence 34566788899999 999999999999999999999999999997654 345788999999999 8999999998853
Q ss_pred -C----CcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1573 -S----QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1573 -D----gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
+ ++|++||. +.++.++.+| ++++|+|++. .|+++ +.|++|++||..++++..++.
T Consensus 123 ~~~~~~~~v~~wd~----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~---s~D~~v~lwd~~~~~~~~~l~-------- 187 (611)
T 1nr0_A 123 EGRERFGHVFLFDT----GTSNGNLTGQARAMNSVDFKPSRPFRIISG---SDDNTVAIFEGPPFKFKSTFG-------- 187 (611)
T ss_dssp CCSSCSEEEEETTT----CCBCBCCCCCSSCEEEEEECSSSSCEEEEE---ETTSCEEEEETTTBEEEEEEC--------
T ss_pred CCCCceeEEEEeeC----CCCcceecCCCCCceEEEECCCCCeEEEEE---eCCCeEEEEECCCCeEeeeec--------
Confidence 3 47889985 3456667665 7899999986 58998 889999999999998888775
Q ss_pred CCCcc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-------cCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1643 RGHAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-------QFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1643 ~gh~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-------gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
+|.. ..++|+|+|++|++++ ++||+.+++++..+. +|...+ +++|+|+|++|++++ +||
T Consensus 188 -~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 188 -EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 5554 4599999999999887 999999999988884 788888 999999999999999 699
Q ss_pred ecCCCeEEEEE-------------------------------------------cCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1703 DLRKFRLLRSV-------------------------------------------PSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1703 DLrTgklL~tl-------------------------------------------~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
|+.+++++.++ .+|.. ++++|+|+|++|+++..+
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D- 345 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE- 345 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC-
Confidence 99988776554 35554 789999999999998532
Q ss_pred chhhhhhhcccccccCCcceEEEEecCCCceeeee--ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1738 LEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI--PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1738 ~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi--dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
..+++||..+....... .....|..+++++++.. +.+. .+..+++|+++..
T Consensus 346 ------------------~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l-~s~s------~d~~v~~w~~~~~ 398 (611)
T 1nr0_A 346 ------------------GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVS------WDDHLKVVPAGGS 398 (611)
T ss_dssp ------------------SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEE------TTTEEEEECSSSS
T ss_pred ------------------CcEEEEECCCCceeeecccCCcceEEEEEECCCCcE-EEEE------cCCceEEeecCCc
Confidence 34566776655444333 12456999999987654 4332 3467999987543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=264.52 Aligned_cols=274 Identities=12% Similarity=0.184 Sum_probs=203.7
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeee-cc-CCCCeeEEEeeecCCCcEEEEe-
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESC-TS-HQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL-~g-Hss~VtsLq~afSpDG~lLaSS- 1571 (1922)
.++.+++|++|. +.|++++|+|+ +|++|+.|++|+|||+.++. ....+ .+ |...|+++ +|+|++++|+++
T Consensus 3 ~~~~~~~~~~h~-~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v--~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK-EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV--AWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS-SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEE--EECTTSSEEEEEE
T ss_pred ccccceeeccCC-CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEE--EECCCCCEEEEEe
Confidence 356678899999 99999999987 99999999999999998753 44555 44 99999999 899999999995
Q ss_pred cCCcEEEeccCCC-----CCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC----ceeeeeccccc
Q 000177 1572 SSQDVHLWNASSI-----AGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTY----QLEAKLSDTSV 1638 (1922)
Q Consensus 1572 sDgtVkLWDl~t~-----~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg----k~i~tL~d~s~ 1638 (1922)
.|++|+|||+... ...++..+.+| ++++|+|++++|+++ +.|++|++||++.. +++..+.
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~---s~D~~v~iwd~~~~~~~~~~~~~~~---- 150 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC---SRDKSVWIWETDESGEEYECISVLQ---- 150 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE---ETTSCEEEEECCTTCCCCEEEEEEC----
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE---eCCCEEEEEeccCCCCCeEEEEEec----
Confidence 5999999998531 12345666665 789999999999999 88999999999532 3444443
Q ss_pred cccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC--cceeeeccCCCce-EEEEecC--CCEEEEEe-----EEEe
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS--VPVHRFDQFTDHG-GGGFHPA--GNEVIINS-----EVWD 1703 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg--k~I~kf~gh~~~V-sVaFSPd--G~~LASGS-----eIWD 1703 (1922)
.+...+..++|+|++.+|++++ ++||+.++ +++..+.+|...+ ++.|+|+ +.+|++++ +|||
T Consensus 151 ---~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 151 ---EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp ---CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred ---cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 1223345599999999999887 89999877 6888999999999 9999999 77899998 6999
Q ss_pred cCCC--------eEEEEEcC-CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCC--ceee
Q 000177 1704 LRKF--------RLLRSVPS-LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINY--SDIA 1770 (1922)
Q Consensus 1704 LrTg--------klL~tl~g-H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dy--s~Ia 1770 (1922)
++++ .++..+.+ |.. ++++|++++ +|+++..+. .+++|+..+. ..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg-------------------~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG-------------------VLAVYEEVDGEWKVFA 287 (330)
T ss_dssp EEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS-------------------CEEEEEEETTEEEEEE
T ss_pred ecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC-------------------EEEEEEcCCCceEEEe
Confidence 9764 45566665 554 799999776 667764322 3455554332 2222
Q ss_pred ee-c-cCC-ceEEEEEcC--CCceEEEEecCCCCCccceEEEEEec
Q 000177 1771 TI-P-VDR-CVLDFATER--TDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1771 Ti-d-vkr-~I~dLa~SP--dds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.. . ... .|..++|+| ++.+|+... .|+.+++|++.
T Consensus 288 ~~~~~h~~~~v~~v~~~~~~~~~~las~s------~Dg~v~~W~~~ 327 (330)
T 2hes_X 288 KRALCHGVYEINVVKWLELNGKTILATGG------DDGIVNFWSLE 327 (330)
T ss_dssp EESCTTTTSCEEEEEEC-----CCEEEEE------TTSEEEEEEC-
T ss_pred ccccccccceEEEEEEecCCCceEEEEec------CCCcEEEEEec
Confidence 22 1 222 699999999 577777553 45789999874
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-26 Score=265.12 Aligned_cols=229 Identities=14% Similarity=0.212 Sum_probs=197.9
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
|.....+.+.++..|. ..|.+++|+|+|++|++|+.|+.|+||++.++. ....+.+|...|.++ .|++++.++
T Consensus 82 Wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~l~ 158 (340)
T 1got_B 82 WDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC--RFLDDNQIV 158 (340)
T ss_dssp EETTTCCEEEEEECSS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEE--EEEETTEEE
T ss_pred EECCCCCcceEeecCC-ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEE--EECCCCcEE
Confidence 3345677788899999 999999999999999999999999999998763 455678999999999 788888877
Q ss_pred EEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1569 LSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1569 aSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+++.|++|++||+.+ ++++.++.+| ++++|+|++++|++| +.|++|++||++++.++.++. .+.
T Consensus 159 s~s~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~sg---~~d~~v~~wd~~~~~~~~~~~-------~h~ 226 (340)
T 1got_B 159 TSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTRLFVSG---ACDASAKLWDVREGMCRQTFT-------GHE 226 (340)
T ss_dssp EEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCSEEEEEC-------CCS
T ss_pred EEECCCcEEEEECCC--CcEEEEEcCCCCceEEEEECCCCCEEEEE---eCCCcEEEEECCCCeeEEEEc-------CCc
Confidence 668899999999998 7788888775 789999999999999 889999999999999988875 123
Q ss_pred CcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC--Cce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--DHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
..+..++|+|++++|++++ ++||+++++.+..+.... ..+ +++|+|+|++|++|+ ++||+.+++.+.
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee
Confidence 3455599999999999887 999999998887775332 345 899999999999998 599999999999
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
++.+|.. ++++|+|+|.+|++++.+
T Consensus 307 ~~~~h~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 307 VLAGHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EeecCCCcEEEEEEcCCCCEEEEEcCC
Confidence 9999987 799999999999999643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-25 Score=250.02 Aligned_cols=265 Identities=16% Similarity=0.223 Sum_probs=216.1
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---eeec--cCCCCeeEEEeeecCCCcEEEEe-cCCcEEE
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL---ESCT--SHQAPVTLVQSHLSGETQLLLSS-SSQDVHL 1578 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l---~tL~--gHss~VtsLq~afSpDG~lLaSS-sDgtVkL 1578 (1922)
.+|. +.|++++|+|++++|++|+ ||.|+|||+.+++.. ..+. +|...|+++ .|+|++++|+++ .|+.|++
T Consensus 48 ~~h~-~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 48 LNHG-EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC--KLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp ECCS-SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEE--EECTTSSEEEEEESSSEEEE
T ss_pred ccCC-CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEE--EEcCCCCEEEEEcCCCcEEE
Confidence 4798 9999999999999999999 999999999877643 3333 799999999 889999988885 5999999
Q ss_pred eccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1579 WNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
||+.+........+..| .+++|+|++++|+++ +.|+.|++||+++++.+..+. .+......++|+|
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~v~~~d~~~~~~~~~~~-------~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC---CSDGNIAVWDLHNQTLVRQFQ-------GHTDGASCIDISN 193 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECT
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEE---eCCCcEEEEeCCCCceeeeee-------cccCceEEEEECC
Confidence 99987221244555443 789999999999998 788999999999998888775 1233445599999
Q ss_pred CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeE
Q 000177 1655 SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTI 1721 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sV 1721 (1922)
+++++++++ ++||+++++.+..+. +...+ +++|+|+|++|++++ .+||+++++.. .+..|.. +++
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~ 271 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL 271 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE
Confidence 999999876 899999999888875 44455 999999999999998 59999988764 5666665 799
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCc
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDM 1801 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~ 1801 (1922)
+|+|+|++|+++.. +..+++|+..+...+........|..++|+|++.++++.. .
T Consensus 272 ~~~~~~~~l~~~~~-------------------dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~ 326 (337)
T 1gxr_A 272 KFAYCGKWFVSTGK-------------------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS------G 326 (337)
T ss_dssp EECTTSSEEEEEET-------------------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE------T
T ss_pred EECCCCCEEEEecC-------------------CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEec------C
Confidence 99999999998852 2356777877777776666778899999999999988764 2
Q ss_pred cceEEEEEe
Q 000177 1802 FSSARIYEI 1810 (1922)
Q Consensus 1802 dSsVRLyEV 1810 (1922)
++.+++|++
T Consensus 327 dg~i~iw~~ 335 (337)
T 1gxr_A 327 DKKATVYEV 335 (337)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 467899986
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=260.93 Aligned_cols=224 Identities=16% Similarity=0.323 Sum_probs=191.6
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
..++++|++|. ..|++++|+|+|++|++|+.|++|+|||+.+++.+..+.+|...|+++ .|+|++.+|+++ .|++|
T Consensus 55 ~~~~~~~~~h~-~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~s~D~~i 131 (319)
T 3frx_A 55 GVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV--DIDKKASMIISGSRDKTI 131 (319)
T ss_dssp EEEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECTTSCEEEEEETTSCE
T ss_pred cccceEEeCCc-ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE--EEcCCCCEEEEEeCCCeE
Confidence 35678899999 999999999999999999999999999999999999999999999999 889999999995 59999
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCC------CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNS------GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPD------G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++||++ +.++.++.+| .++.|+|. +.+|+++ +.|++|++||+++++....+. ++...
T Consensus 132 ~vwd~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~---~~d~~i~~wd~~~~~~~~~~~-------~h~~~ 198 (319)
T 3frx_A 132 KVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA---GNDKMVKAWNLNQFQIEADFI-------GHNSN 198 (319)
T ss_dssp EEEETT---SCEEEEECCCSSCEEEEEECCC------CCEEEEE---ETTSCEEEEETTTTEEEEEEC-------CCCSC
T ss_pred EEEECC---CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE---eCCCEEEEEECCcchhheeec-------CCCCc
Confidence 999997 4567777765 67899885 4489998 889999999999988877775 12334
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCC-
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSL- 1716 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH- 1716 (1922)
+..++|+|+|++|++++ ++||+++++++..+..+....+++|+|++.+|++++ ++|++.+...+..+..+
T Consensus 199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 278 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278 (319)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccc
Confidence 44599999999999887 999999999999998765444999999999999987 69999988888777532
Q ss_pred -------C--ceeEEEccCCCEEEEEEccC
Q 000177 1717 -------D--QTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1717 -------~--~~sVaFSPdG~~LaSgs~~d 1737 (1922)
. ..+++|+|+|++|+++..+.
T Consensus 279 ~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp TTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred cccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 1 16899999999999996433
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-25 Score=260.04 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=222.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC------ceeeeccCCCCeeEEEeeecCC----C---
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS------PLESCTSHQAPVTLVQSHLSGE----T--- 1565 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk------~l~tL~gHss~VtsLq~afSpD----G--- 1565 (1922)
...+++++|. +.|++++|+| ++|++|+.||+|+|||+.+++ .+..+.+|..+|+++ .|+|+ +
T Consensus 7 ~~~~~~~~h~-~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 7 ATANAGKAHD-ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV--DVLQAIERDAFEL 81 (397)
T ss_dssp EEEEESSCSS-SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEE--EEEEEEETTTEEE
T ss_pred hhhhhhhhhh-cCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEE--EEecccccCCccc
Confidence 3456788999 9999999998 899999999999999999988 788899999999999 78888 8
Q ss_pred cEEEEe-cCCcEEEeccCCCCCCc-----ceEecc---------ceeEEEc----CCCCE-EEEeecCCCCCeEEEEECC
Q 000177 1566 QLLLSS-SSQDVHLWNASSIAGGP-----MHSFEG---------CKAARFS----NSGNL-FAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1566 ~lLaSS-sDgtVkLWDl~t~~gk~-----l~tf~g---------h~sVaFS----PDG~~-LaSgS~~S~DgtIrIWDlr 1625 (1922)
++|+++ .|+.|++||+.+ +.. +..+.. +.+++|+ |++++ |+++ +.|+.|++||+.
T Consensus 82 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~ 156 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITR--EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT---DVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEEETTSCEEEEEEEE--CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE---ETTSCEEEEEEE
T ss_pred cEEEEEcCCCCEEEEEccC--CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE---eCCCcEEEEeCC
Confidence 888884 699999999987 554 555543 4789999 99999 9998 789999999999
Q ss_pred C------Cceee-----eeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc---C---CCc
Q 000177 1626 T------YQLEA-----KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ---F---TDH 1683 (1922)
Q Consensus 1626 T------gk~i~-----tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g---h---~~~ 1683 (1922)
+ ++.+. .+.........+......++|+|++ ++++++ ++||+++++++..+.. | ...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 8 66655 4420000001134455669999999 888776 8999999999999998 8 777
Q ss_pred e-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEcC-------------CCc--eeEEEccCCCEEEEEEccCch
Q 000177 1684 G-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPS-------------LDQ--TTITFNARGDVIYAILRRNLE 1739 (1922)
Q Consensus 1684 V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~g-------------H~~--~sVaFSPdG~~LaSgs~~d~~ 1739 (1922)
+ +++|+|++++|++++ .+||+++++.+..+.+ |.. ++++|+|+|++|+++..
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 311 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW---- 311 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC----
Confidence 7 999999999999875 3999999999999987 666 79999999999999853
Q ss_pred hhhhhhcccccccCCcceEEEEecCCCceeeeec------c----------------CCceEEEEEcCCC----------
Q 000177 1740 DVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP------V----------------DRCVLDFATERTD---------- 1787 (1922)
Q Consensus 1740 dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid------v----------------kr~I~dLa~SPdd---------- 1787 (1922)
+..+++|+..+...+.++. . ...|..++|+|++
T Consensus 312 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 312 ---------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp ---------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred ---------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 2346777777777777776 3 5679999999998
Q ss_pred ceEEEEecCCCCCccceEEEEEec
Q 000177 1788 SFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1788 s~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.++++.. .++.+++|++.
T Consensus 377 ~~l~s~~------~dg~i~iw~~~ 394 (397)
T 1sq9_A 377 ESLCCVC------LDRSIRWFREA 394 (397)
T ss_dssp CEEEEEE------TTTEEEEEEEE
T ss_pred ceEEEec------CCCcEEEEEcC
Confidence 5776553 35789999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-25 Score=272.58 Aligned_cols=267 Identities=21% Similarity=0.350 Sum_probs=222.4
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgt 1575 (1922)
..+.++++.+|. ..|++++|+|++++|++++.|++|++||.. +..+..+.+|...|+++ +|+|++++|+++ .|++
T Consensus 292 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 292 NGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGV--AFSPDGQTIASASDDKT 367 (577)
T ss_dssp TSCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSE
T ss_pred CCcEEEEEecCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEE--EECCCCCEEEEEeCCCE
Confidence 456678889999 999999999999999999999999999975 55677889999999999 899999999995 5999
Q ss_pred EEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|++||.. ++.+.++.+| ++++|+|++++|+++ +.|+.|++||. +++.+.++. .+...+..++
T Consensus 368 v~~~~~~---~~~~~~~~~~~~~v~~~~~s~dg~~l~~~---~~d~~v~~~~~-~~~~~~~~~-------~~~~~v~~~~ 433 (577)
T 2ymu_A 368 VKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNR-NGQLLQTLT-------GHSSSVWGVA 433 (577)
T ss_dssp EEEEETT---CCEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSEEEEECT-TCCEEEEEE-------CCSSCEEEEE
T ss_pred EEEEcCC---CCEEEEecCCCCCeEEEEECCCCCEEEEE---eCCCEEEEEeC-CCCEEEEec-------CCCCCeEEEE
Confidence 9999964 5677777764 789999999999999 88999999995 566666665 1223344499
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
|+|++++|++++ ++||. +++.+..+.+|...+ +++|+|+|++|++++ +|||. ++++++++.+|..
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence 999999999877 89995 677889999999998 999999999999998 59995 6899999999976
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCC
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
++++|+|+|++|+++..+ ..+++||. +...+.++.. ...|..++|+|++++|+...
T Consensus 512 ~~l~~s~dg~~l~s~~~d-------------------g~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~--- 568 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDD-------------------KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--- 568 (577)
T ss_dssp EEEEECTTSSCEEEEETT-------------------SEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE---
T ss_pred EEEEEcCCCCEEEEEECc-------------------CEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe---
Confidence 899999999999998532 34566663 4455555554 56799999999999988653
Q ss_pred CCCccceEEEEE
Q 000177 1798 QEDMFSSARIYE 1809 (1922)
Q Consensus 1798 s~d~dSsVRLyE 1809 (1922)
.|..+++|+
T Consensus 569 ---~D~~i~~Wd 577 (577)
T 2ymu_A 569 ---SDKTVKLWN 577 (577)
T ss_dssp ---TTSCEEEEC
T ss_pred ---CCCEEEEeC
Confidence 346799995
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=269.37 Aligned_cols=214 Identities=15% Similarity=0.228 Sum_probs=178.3
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee----ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC----TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL----~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
.|. ..|++++|+|++ .|++|+.||+|+|||+.+++.+..+ .+|...|++| +|+|++++|+++ .|++|+|||
T Consensus 80 ~~~-~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v--~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 80 QTE-AGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTV--SVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp EES-SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEE--EECTTSSEEEEEETTSCEEEEE
T ss_pred ccC-CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEE--EECCCCCEEEEEeCCCeEEEEE
Confidence 455 789999999985 6889999999999999998876543 5899999999 899999999995 599999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
+.+ ++++.++.+| ++++|+|++. +|+++ +.|++|++||+++++....+.. ..+++....++|+|+
T Consensus 156 ~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~---s~D~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 156 LAQ--QVVLSSYRAHAAQVTCVAASPHKDSVFLSC---SEDNRILLWDTRCPKPASQIGC-----SAPGYLPTSLAWHPQ 225 (344)
T ss_dssp TTT--TEEEEEECCCSSCEEEEEECSSCTTEEEEE---ETTSCEEEEETTSSSCEEECC---------CCCEEEEEECSS
T ss_pred CCC--CcEEEEEcCcCCceEEEEecCCCCCceeee---ccccccccccccccceeeeeec-----ceeeccceeeeecCC
Confidence 998 8888999876 7899999875 67888 8899999999999998887641 123455667999996
Q ss_pred C-CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCC-CEEEEEe-----EEEecCCCeEEEEEcCCCc--ee
Q 000177 1656 D-TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG-NEVIINS-----EVWDLRKFRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1656 G-~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG-~~LASGS-----eIWDLrTgklL~tl~gH~~--~s 1720 (1922)
+ ++|++++ ++||++++++++++.+|...| +++|+|+| ++|++++ +|||+++++++ .+.+|.. ++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~ 304 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD 304 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence 5 5677665 899999999999999999999 99999998 5788988 69999998876 4678876 89
Q ss_pred EEEccCCCE-EEEEE
Q 000177 1721 ITFNARGDV-IYAIL 1734 (1922)
Q Consensus 1721 VaFSPdG~~-LaSgs 1734 (1922)
++|+|+|.. |++++
T Consensus 305 v~~sp~~~~llas~s 319 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVG 319 (344)
T ss_dssp EEECSSSTTEEEEEE
T ss_pred EEEeCCCCeEEEEEc
Confidence 999999975 45554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=272.17 Aligned_cols=281 Identities=10% Similarity=0.094 Sum_probs=212.1
Q ss_pred eEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCce--eeeccCCCCeeEEEeeecC-CCcEEEEe-cCCc
Q 000177 1501 WRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQD 1575 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l--~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgt 1575 (1922)
.+...+|. ..|+||+|+| ++++||+|+.||+|+|||+.+++.. ..+.+|.+.|++| .|+| ++.+|+++ .|++
T Consensus 112 ~~~~~~~~-~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l--~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFD-RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGL--KFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECS-SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEE--EECSSCTTEEEEECSSSC
T ss_pred cccCCCCC-CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEE--EEeCCCCCEEEEEeCCCE
Confidence 44556788 8999999999 6779999999999999999877654 4457899999999 8897 67888885 5999
Q ss_pred EEEeccCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1576 VHLWNASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
|+|||++. . ....+.. +.+++|+|++++|++| +.|+.|++||++. +.+.++. .+...+.
T Consensus 189 v~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~dg~i~~wd~~~-~~~~~~~-------~h~~~v~ 254 (435)
T 4e54_B 189 TRLQDFKG--N-ILRVFASSDTINIWFCSLDVSASSRMVVTG---DNVGNVILLNMDG-KELWNLR-------MHKKKVT 254 (435)
T ss_dssp EEEEETTS--C-EEEEEECCSSCSCCCCCEEEETTTTEEEEE---CSSSBEEEEESSS-CBCCCSB-------CCSSCEE
T ss_pred EEEeeccC--C-ceeEEeccCCCCccEEEEEECCCCCEEEEE---eCCCcEeeeccCc-ceeEEEe-------cccceEE
Confidence 99999975 3 3333322 2679999999999999 8899999999974 4444443 1223344
Q ss_pred EEEEcCCCC-eEeecc-----EEEEcCCCcceeee---ccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1649 QIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRF---DQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1649 vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf---~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
.++|+|++. ++++++ ++||+++++....+ .+|...| +++|+|+|.+|++++ +|||++++.....+
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 599999987 555655 89999987654443 5688888 999999999999999 59999999988888
Q ss_pred cCCCc--------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc--CCceEEE-E
Q 000177 1714 PSLDQ--------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDF-A 1782 (1922)
Q Consensus 1714 ~gH~~--------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dL-a 1782 (1922)
..|.. ..+.|+|++.+++++...+.....+ ...-...+++|+..+...+..+.. ...|..+ +
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~ 407 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSC-------TPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE 407 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCS-------STTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEE
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEE-------EecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEE
Confidence 76653 3678999999999885433222211 111234688999888887777643 3457776 6
Q ss_pred EcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1783 TERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1783 ~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|+|++.+|+... +..|+||++..
T Consensus 408 fspdg~~lasg~-------d~~i~iW~~~~ 430 (435)
T 4e54_B 408 FNPMGDTLASAM-------GYHILIWSQQE 430 (435)
T ss_dssp ECTTSSCEEEEC-------SSEEEECCCC-
T ss_pred ECCCCCEEEEEc-------CCcEEEEECCc
Confidence 999999988531 24699998643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-25 Score=258.01 Aligned_cols=281 Identities=14% Similarity=0.105 Sum_probs=225.9
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceeeec--cCCCCeeEEEeeecC-CCcEEEEe
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSSPLESCT--SHQAPVTLVQSHLSG-ETQLLLSS 1571 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk~l~tL~--gHss~VtsLq~afSp-DG~lLaSS 1571 (1922)
..++..+++.+|. +.|++++|+|++ ++|++|+.||+|+|||+.+++....+. +|...|+++ .|+| ++++|+++
T Consensus 61 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 61 KSYKLHRTASPFD-RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGM--KFNQFNTNQLFVS 137 (383)
T ss_dssp TTCEEEEEECCCS-SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEE--EEETTEEEEEEEE
T ss_pred cccceEEeccCCC-CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEE--EeCCCCCCEEEEE
Confidence 4566677889999 999999999999 999999999999999999988877774 799999999 8899 67888885
Q ss_pred -cCCcEEEeccCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
.|++|++||+.. ..+..+.. +.+++|+|++++|+++ +.|+.|++||+ +++.+.++. .+
T Consensus 138 ~~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~i~d~-~~~~~~~~~-------~h 203 (383)
T 3ei3_B 138 SIRGATTLRDFSG---SVIQVFAKTDSWDYWYCCVDVSVSRQMLATG---DSTGRLLLLGL-DGHEIFKEK-------LH 203 (383)
T ss_dssp ETTTEEEEEETTS---CEEEEEECCCCSSCCEEEEEEETTTTEEEEE---ETTSEEEEEET-TSCEEEEEE-------CS
T ss_pred eCCCEEEEEECCC---CceEEEeccCCCCCCeEEEEECCCCCEEEEE---CCCCCEEEEEC-CCCEEEEec-------cC
Confidence 699999999985 44444432 4789999999999999 88999999999 467777765 12
Q ss_pred CCcceEEEEcCCCC-eEeecc-----EEEEcCC----CcceeeeccCCCce-EEEEec-CCCEEEEEe-----EEEecCC
Q 000177 1644 GHAYSQIHFSPSDT-MLLWNG-----ILWDRRN----SVPVHRFDQFTDHG-GGGFHP-AGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~-lLaSgg-----rLWDlrt----gk~I~kf~gh~~~V-sVaFSP-dG~~LASGS-----eIWDLrT 1706 (1922)
...+..++|+|+++ ++++++ ++||+++ +.++..+ +|...+ +++|+| +|.+|++++ ++||+++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 33445599999999 788776 9999998 5566666 677788 999999 999999998 5999999
Q ss_pred CeEEEEEcCCCc--------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc---C
Q 000177 1707 FRLLRSVPSLDQ--------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV---D 1775 (1922)
Q Consensus 1707 gklL~tl~gH~~--------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv---k 1775 (1922)
++.+.++.+|.. ..+.|+|++.+++.++..+..- ....+..+++||..+...+.++.. .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~----------s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL----------LLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT----------CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc----------ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 888777775542 3568999999998775433211 122567899999988888888864 3
Q ss_pred CceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1776 RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1776 r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+..++|+|++.+|+... ++.+++|++.
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-------d~~i~iw~~~ 381 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-------GFNILIWNRE 381 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-------TTEEEEEECC
T ss_pred ceEEEEEEecCccEEEEec-------CCcEEEEecC
Confidence 4466779999999988652 3679999874
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=264.52 Aligned_cols=278 Identities=14% Similarity=0.252 Sum_probs=196.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----------ceeeeccCC------------CCeeEEEeeecC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-----------PLESCTSHQ------------APVTLVQSHLSG 1563 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-----------~l~tL~gHs------------s~VtsLq~afSp 1563 (1922)
|. +.|++++|+|+|++|++|+.||.|+|||+.+++ ....+.+|. ..|+++ .|+|
T Consensus 27 ~~-~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l--~~~~ 103 (447)
T 3dw8_B 27 EA-DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI--RWLP 103 (447)
T ss_dssp GG-GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE--EECC
T ss_pred cc-CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE--EEcC
Confidence 56 899999999999999999999999999998877 477889998 889999 8899
Q ss_pred CC--cEEEE-ecCCcEEEeccCCCCCCc---------------------------------------ceEe-cc----ce
Q 000177 1564 ET--QLLLS-SSSQDVHLWNASSIAGGP---------------------------------------MHSF-EG----CK 1596 (1922)
Q Consensus 1564 DG--~lLaS-SsDgtVkLWDl~t~~gk~---------------------------------------l~tf-~g----h~ 1596 (1922)
++ .+|++ +.|++|++||+.. +.. ...+ .+ ++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISE--RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEE--EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred CCCcceEEEeCCCCeEEEEeccc--ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 87 66666 5699999999975 211 1122 23 37
Q ss_pred eEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCC-CeEeecc-----EEEEcC
Q 000177 1597 AARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG-----ILWDRR 1669 (1922)
Q Consensus 1597 sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg-----rLWDlr 1669 (1922)
+++|+|++++|+++ .|++|++||+++ ++.+..+.........+...+..++|+|++ ++|++++ ++||++
T Consensus 182 ~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 182 SISINSDYETYLSA----DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEEECTTSSEEEEE----CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCEEEEe----CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 89999999999986 389999999994 444443321111111233445569999999 8999877 999999
Q ss_pred CCcc----eeeeccCCC------------ce-EEEEecCCCEEEEEe----EEEecCC-CeEEEEEcCCCc-e-------
Q 000177 1670 NSVP----VHRFDQFTD------------HG-GGGFHPAGNEVIINS----EVWDLRK-FRLLRSVPSLDQ-T------- 1719 (1922)
Q Consensus 1670 tgk~----I~kf~gh~~------------~V-sVaFSPdG~~LASGS----eIWDLrT-gklL~tl~gH~~-~------- 1719 (1922)
+++. +..+..|.. .+ +++|+|+|++|++++ +|||+++ ++++.++.+|.. .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccc
Confidence 9887 788888875 67 999999999999998 5999997 888889988864 1
Q ss_pred ---------eEEEccCCCEEEEEEccCchhhhhhhcccccc------cC-----CcceEEEEe--cC--CCceeeeeccC
Q 000177 1720 ---------TITFNARGDVIYAILRRNLEDVMSAVHTRRVK------HP-----LFAAFRTVD--AI--NYSDIATIPVD 1775 (1922)
Q Consensus 1720 ---------sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~k------sp-----~~ssFrt~D--a~--dys~IaTidvk 1775 (1922)
.++|+|+|++|+++..+....+| .+...+.. .+ ....-++.. .. .......++..
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF-DRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTTEEEEE-ETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred cccccccceEEEECCCCCEEEEeccCCEEEEE-EcCCCcceeeeecccccccccccCCccccccCCcccccccccccccC
Confidence 29999999999988544332222 11110000 00 000000000 00 00011133456
Q ss_pred CceEEEEEcCCCceEEEEe
Q 000177 1776 RCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1776 r~I~dLa~SPdds~LAVVe 1794 (1922)
..|..++|+|++..||+..
T Consensus 417 ~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp SCCCEEEECSSSSEEEEEC
T ss_pred CceeEEEECCCCCEEEEEe
Confidence 6799999999999999773
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=254.98 Aligned_cols=279 Identities=17% Similarity=0.259 Sum_probs=214.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
|. +.|++++|+|++++|++|+.||.|+||| .+++.+..+.+|...|+++ .|+|++++|+++ .|+.|++||+.+
T Consensus 107 ~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~d~~i~iwd~~~-- 180 (425)
T 1r5m_A 107 TT-NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSV--KWNKDGTHIISMDVENVTILWNVIS-- 180 (425)
T ss_dssp -C-BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEE--EECTTSSEEEEEETTCCEEEEETTT--
T ss_pred CC-CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEE--EECCCCCEEEEEecCCeEEEEECCC--
Confidence 67 8999999999999999999999999999 6788889999999999999 889999998885 599999999987
Q ss_pred CCcceEecc-------------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1586 GGPMHSFEG-------------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1586 gk~l~tf~g-------------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++.+..+.. +.++.|+|++. ++++ +.|+.|++||+.+++.+..+. .+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~i~~~d~~~~~~~~~~~-------~~~~~ 249 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP---GPKGAIFVYQITEKTPTGKLI-------GHHGP 249 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTE-EEEE---CGGGCEEEEETTCSSCSEEEC-------CCSSC
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE---cCCCeEEEEEcCCCceeeeec-------cCCCc
Confidence 666665543 56789998855 6676 778999999999998877775 12334
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
...++|+|++++|++++ ++||+++++++..+..|...+ ++.|+|++ ++++++ .+||+++++.+..+..
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 328 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV 328 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence 45599999999999877 999999999999999998888 99999999 888887 5999999999999988
Q ss_pred CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccc-cccC-CcceEEEEecCCCceeeeeccC--C-ceEEEEEcCCCc
Q 000177 1716 LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRR-VKHP-LFAAFRTVDAINYSDIATIPVD--R-CVLDFATERTDS 1788 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr-~ksp-~~ssFrt~Da~dys~IaTidvk--r-~I~dLa~SPdds 1788 (1922)
|.. ++++|+|+|++|+++..+....++. +.... .... ....-..+.......+..+... . .|.+++|+|++.
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYD-LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEE-CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred CCccEEEEEEcCCCCEEEEEECCCeEEEEE-CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence 765 8999999999999986443222221 10000 0000 0000001111111255666554 4 899999999999
Q ss_pred eEEEEecCCCCCccceEEEEEe
Q 000177 1789 FVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++++.. .++.+++|++
T Consensus 408 ~l~~~~------~dg~i~iw~~ 423 (425)
T 1r5m_A 408 KISVAY------SLQEGSVVAI 423 (425)
T ss_dssp EEEEEE------SSSCCEEEEC
T ss_pred eEEEEe------cCceEEEEee
Confidence 988764 3367899986
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=281.13 Aligned_cols=258 Identities=14% Similarity=0.185 Sum_probs=222.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
+...++|.+|. +.|++++|+|+|++|++|+.||+|+|||+.+++.+.++.+|..+|+++ .|+|++++|+++ .|++|
T Consensus 3 l~~~~~~~~h~-~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 3 LDIKKTFSNRS-DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAG--KFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp CCCEEEEEEEC-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EEEGGGTEEEEEETTSEE
T ss_pred cccceeeecCC-CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEE--EEeCCCCEEEEEeCCCeE
Confidence 45567889999 999999999999999999999999999999999999999999999999 889999999985 59999
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceEEE
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
++||+.+ ++.+.++.+| ++++|+|++++|+++ +.|++|++||+.++ .....+. .+.+....++
T Consensus 80 ~vw~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~vw~~~~~~~~~~~~~-------~~~~~v~~~~ 147 (814)
T 3mkq_A 80 RVFNYNT--GEKVVDFEAHPDYIRSIAVHPTKPYVLSG---SDDLTVKLWNWENNWALEQTFE-------GHEHFVMCVA 147 (814)
T ss_dssp EEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSEEEEEEGGGTSEEEEEEE-------CCSSCEEEEE
T ss_pred EEEECCC--CcEEEEEecCCCCEEEEEEeCCCCEEEEE---cCCCEEEEEECCCCceEEEEEc-------CCCCcEEEEE
Confidence 9999998 7788888765 789999999999998 88999999999987 5555553 2334456699
Q ss_pred EcC-CCCeEeecc-----EEEEcCCCcceeeeccCC-Cce-EEEEec--CCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1652 FSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQFT-DHG-GGGFHP--AGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1652 FSP-dG~lLaSgg-----rLWDlrtgk~I~kf~gh~-~~V-sVaFSP--dG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
|+| ++.++++++ ++||+.+++....+..+. ..+ +++|+| ++.+|++++ .+||+++++.+.++.+|
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 999 788888776 899999998888887665 556 999999 999999998 59999999999999988
Q ss_pred Cc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCce
Q 000177 1717 DQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSF 1789 (1922)
Q Consensus 1717 ~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~ 1789 (1922)
.. ++++|+|+|++|+++.. +..+++|+..++..+.++.. ...+..++|+|++..
T Consensus 228 ~~~v~~~~~~~~~~~l~~~~~-------------------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 228 MSNVSFAVFHPTLPIIISGSE-------------------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEET-------------------TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred CCCEEEEEEcCCCCEEEEEeC-------------------CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence 66 79999999999999852 24577888888877777765 356999999999874
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-25 Score=261.28 Aligned_cols=219 Identities=16% Similarity=0.224 Sum_probs=183.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
..|++++|+|+|++|++|+.|++|+|||+.+++.+..+.+|...|+++ .|+|++++|+++ .|++|++||+++ +++
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~--~~~p~~~~l~s~s~d~~v~iwd~~~--~~~ 199 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLVSGSGDRTVRIWDLRT--GQC 199 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEETTT--TEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEE--EEcCCCCEEEEecCCCcEEEEECCC--Cee
Confidence 359999999999999999999999999999999999999999999999 889999999985 699999999987 666
Q ss_pred ceEecc---ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-
Q 000177 1589 MHSFEG---CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG- 1663 (1922)
Q Consensus 1589 l~tf~g---h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg- 1663 (1922)
...+.. +.+++|+| ++++|+++ +.|++|++||++++..+..+........++...+..++|+|+|++|++++
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~---s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 200 SLTLSIEDGVTTVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEcCCCcEEEEEECCCCCEEEEE---cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 666543 47899999 89999999 88999999999999888777422111122334455599999999999887
Q ss_pred ----EEEEcCCC------------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--e
Q 000177 1664 ----ILWDRRNS------------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--T 1719 (1922)
Q Consensus 1664 ----rLWDlrtg------------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~ 1719 (1922)
++||+++. .+...+.+|...+ +++|+|++.+|++++ ++||+++++++.++.+|.. .
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence 99999863 3566788899888 999999999999999 5999999999999999987 7
Q ss_pred eEEEcc------CCCEEEEEEc
Q 000177 1720 TITFNA------RGDVIYAILR 1735 (1922)
Q Consensus 1720 sVaFSP------dG~~LaSgs~ 1735 (1922)
+++|++ ++.+|++++.
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEET
T ss_pred EEEecCCcCcCCCCCEEEEECC
Confidence 888876 6889998853
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-25 Score=254.66 Aligned_cols=216 Identities=13% Similarity=0.174 Sum_probs=183.6
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
+..|. +.|++++|+|++++|++|+.|+.|+|||+.+++ .+..+.+|...|+++ .|+|++++|+++ .|++|++||
T Consensus 4 ~~~~~-~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLV-EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV--DWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCS-SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEE--EEETTTTEEEEEETTSCEEEEE
T ss_pred ecccC-CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEE--EEeCCCCEEEEEcCCCeEEEEE
Confidence 34588 899999999999999999999999999999887 888999999999999 889999999985 599999999
Q ss_pred cCCCCCCcceEe--cc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee---eeeccccccccCCCCcceEEE
Q 000177 1581 ASSIAGGPMHSF--EG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE---AKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1581 l~t~~gk~l~tf--~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i---~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
+.+ ++....+ .. +.+++|+|++++|+++ +.|+.|++||+.++... ..+. ..+......++
T Consensus 81 ~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~v~i~d~~~~~~~~~~~~~~------~~~~~~i~~~~ 149 (372)
T 1k8k_C 81 LKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVG---SGSRVISICYFEQENDWWVCKHIK------KPIRSTVLSLD 149 (372)
T ss_dssp EET--TEEEEEEECCCCSSCEEEEEECTTSSEEEEE---ETTSSEEEEEEETTTTEEEEEEEC------TTCCSCEEEEE
T ss_pred CCC--CeeeeeEEeecCCCceeEEEECCCCCEEEEE---eCCCEEEEEEecCCCcceeeeeee------cccCCCeeEEE
Confidence 987 4433332 22 4789999999999999 78899999999987742 2222 11234455599
Q ss_pred EcCCCCeEeecc-----EEEEcC------------------CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1652 FSPSDTMLLWNG-----ILWDRR------------------NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlr------------------tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
|+|++++|++++ ++||++ +++++..+..|...+ +++|+|++++|++++ ++|
T Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 999999999876 899954 678889999998888 999999999999998 599
Q ss_pred ecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1703 DLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1703 DLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
|+++++++.++..|.. ++++|+|+|.+++++
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence 9999999999998865 899999999999888
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=247.96 Aligned_cols=226 Identities=18% Similarity=0.297 Sum_probs=197.4
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
....+...++.+|. ..|++++|+|++++|++|+.||+|+|||+.+++++..+.+|...|.++ .|+|++++|+++ .|
T Consensus 52 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~~~d 128 (312)
T 4ery_A 52 AYDGKFEKTISGHK-LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC--NFNPQSNLIVSGSFD 128 (312)
T ss_dssp TTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSSSEEEEEETT
T ss_pred CCCcccchhhccCC-CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEE--EEcCCCCEEEEEeCC
Confidence 44566778889999 999999999999999999999999999999999999999999999999 889999999995 59
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
++|++||+++ ++++..+..| .++.|+|++++|+++ +.|+.|++||+++++.+..+. .........
T Consensus 129 ~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~ 197 (312)
T 4ery_A 129 ESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLI------DDDNPPVSF 197 (312)
T ss_dssp SCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCCEEEEEC------CSSCCCEEE
T ss_pred CcEEEEECCC--CEEEEEecCCCCcEEEEEEcCCCCEEEEE---eCCCcEEEEECCCCceeeEEe------ccCCCceEE
Confidence 9999999998 7778887764 789999999999999 889999999999998887764 112334555
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce---EEEEe-cCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG---GGGFH-PAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V---sVaFS-PdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
++|+|++++|++++ ++||+++++++..+.+|.... ...|+ +++.+|++++ ++||+.+++++..+.+
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 277 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc
Confidence 99999999999877 999999999999998887643 34444 6788999998 5999999999999999
Q ss_pred CCc--eeEEEccCCCEEEEEE
Q 000177 1716 LDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs 1734 (1922)
|.. .+++|+|++.+++++.
T Consensus 278 h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 278 HTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEE
T ss_pred cCCcEEEEeecCcCCceEEEE
Confidence 977 7999999999999885
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-24 Score=239.95 Aligned_cols=272 Identities=15% Similarity=0.124 Sum_probs=218.3
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..+++.++|.+|. +.|++++| +++++|++|+.||.|+|||+.+++....+..|...|+++ .|+|++++|+++ .|+
T Consensus 6 ~~~~~~~~l~~h~-~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 6 TGYQLSATLKGHD-QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV--CYDSEKELLLFGGKDT 81 (313)
T ss_dssp CCCEEEEEECCCS-SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEE--EEETTTTEEEEEETTS
T ss_pred ccHHHHHHhhCCC-CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEE--EECCCCCEEEEecCCC
Confidence 4567788999999 99999999 999999999999999999999999899999999999999 889999999985 699
Q ss_pred cEEEeccCCCC-CCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1575 DVHLWNASSIA-GGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~-gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
.|++|++.... .+++..+.+| .++.| ++++++++ +.|+.|++|| .++.+..+. .+......
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~---~~d~~i~~~d--~~~~~~~~~-------~~~~~v~~ 147 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG---SWDKTAKVWK--EGSLVYNLQ-------AHNASVWD 147 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEE---ETTSEEEEEE--TTEEEEEEE-------CCSSCEEE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEE---eCCCCEEEEc--CCcEEEecc-------cCCCceeE
Confidence 99999987621 3456666654 67777 67899998 8899999999 556666654 12334444
Q ss_pred EEEcC-CCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1650 IHFSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1650 VaFSP-dG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
+.|+| +++++++++ ++|| .++.+..+.. |...+ ++.|+|++. +++++ .+||+++++++..+.+|
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 88887 888998777 9999 5567777877 77777 999999999 77776 59999999999999988
Q ss_pred Cc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ceEEEEEcCCCceEEEE
Q 000177 1717 DQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1717 ~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I~dLa~SPdds~LAVV 1793 (1922)
.. ++++|+|+|. |+++. .+..+++|+..+.+.+..+.... .|..++|+|++.+++ .
T Consensus 225 ~~~i~~~~~~~~~~-l~~~~-------------------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~ 283 (313)
T 3odt_A 225 ESFVYCIKLLPNGD-IVSCG-------------------EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV-G 283 (313)
T ss_dssp SSCEEEEEECTTSC-EEEEE-------------------TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE-E
T ss_pred CceEEEEEEecCCC-EEEEe-------------------cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE-E
Confidence 76 8999999995 55653 23457788877777777776644 799999999998554 2
Q ss_pred ecCCCCCccceEEEEEecCCCC
Q 000177 1794 TMDDQEDMFSSARIYEIGRRRP 1815 (1922)
Q Consensus 1794 e~dds~d~dSsVRLyEVGr~r~ 1815 (1922)
..++.+++|++...+.
T Consensus 284 ------~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 284 ------SSDNLVRIFSQEKSRW 299 (313)
T ss_dssp ------ETTSCEEEEESCGGGC
T ss_pred ------eCCCcEEEEeCCCCce
Confidence 1347899999865443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=260.95 Aligned_cols=294 Identities=13% Similarity=0.169 Sum_probs=212.9
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CCceeeeccCCCCeeEEEeeecCC-CcEEEEe-cC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS----SSPLESCTSHQAPVTLVQSHLSGE-TQLLLSS-SS 1573 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t----gk~l~tL~gHss~VtsLq~afSpD-G~lLaSS-sD 1573 (1922)
++..+ .|. ..|++++|+|++++|++|+.||.|+|||+.+ .+.+..+.+|...|+++ .|+|+ +++|+++ .|
T Consensus 60 ~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~~~d 135 (416)
T 2pm9_A 60 PIASL-QVD-SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTV--KFNAKQDNVLASGGNN 135 (416)
T ss_dssp CSCCC-CCS-SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEE--EECSSSTTBEEEECSS
T ss_pred EEEEE-ecC-CceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEE--EEcCCCCCEEEEEcCC
Confidence 33433 577 8999999999999999999999999999987 45778889999999999 88998 8888885 59
Q ss_pred CcEEEeccCCCCCC------cceEe---cc----ceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeecccccc
Q 000177 1574 QDVHLWNASSIAGG------PMHSF---EG----CKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVN 1639 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk------~l~tf---~g----h~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~ 1639 (1922)
++|++||+.+ +. ....+ .. +.+++|+|+ +.+|+++ +.|+.|++||+++++.+..+.....
T Consensus 136 g~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~v~iwd~~~~~~~~~~~~~~~- 209 (416)
T 2pm9_A 136 GEIFIWDMNK--CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA---GSSNFASIWDLKAKKEVIHLSYTSP- 209 (416)
T ss_dssp SCEEBCBTTT--TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE---SSSSCEEEEETTTTEEEEEECCCCC-
T ss_pred CeEEEEECCC--CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE---cCCCCEEEEECCCCCcceEEecccc-
Confidence 9999999987 33 22222 22 488999998 7899998 8899999999999998888761110
Q ss_pred ccCCCCcceEEEEcCCC-CeEeecc--------EEEEcCCC-cceeeec-cCCCce-EEEEec-CCCEEEEEe-----EE
Q 000177 1640 LTGRGHAYSQIHFSPSD-TMLLWNG--------ILWDRRNS-VPVHRFD-QFTDHG-GGGFHP-AGNEVIINS-----EV 1701 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG-~lLaSgg--------rLWDlrtg-k~I~kf~-gh~~~V-sVaFSP-dG~~LASGS-----eI 1701 (1922)
..++......++|+|++ .++++++ ++||++++ +++..+. +|...+ +++|+| ++++|++++ ++
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 00113345569999998 5676544 79999987 6788888 888888 999999 999999998 59
Q ss_pred EecCCCeEEEEEcCCCc--eeEEEccCC-CEEEEEEccCchhhhhhhcccccccCCc--------ceEEEEec-------
Q 000177 1702 WDLRKFRLLRSVPSLDQ--TTITFNARG-DVIYAILRRNLEDVMSAVHTRRVKHPLF--------AAFRTVDA------- 1763 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~~--~sVaFSPdG-~~LaSgs~~d~~dv~s~lh~rr~ksp~~--------ssFrt~Da------- 1763 (1922)
||+++++++.++.+|.. ++++|+|++ .+|+++..+....++. +.......... .....+..
T Consensus 290 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 290 WNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT-LQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp ECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE-SCCCCCSSCC----------------------CC
T ss_pred eeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE-ccCCCCCcccccccccccCCcccccccccccccc
Confidence 99999999999998876 799999999 7888875444333221 11111000000 00000000
Q ss_pred ---CCCceeeeec-cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1764 ---INYSDIATIP-VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1764 ---~dys~IaTid-vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+.. .... ..+.+..++|+|+|+++++. ..++.|+||++.
T Consensus 369 ~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~------~~d~~v~~w~~~ 413 (416)
T 2pm9_A 369 EKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQIT------PDGKGVSITNPK 413 (416)
T ss_dssp SCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBC------TTSSCBCCBCCC
T ss_pred cccccccc-cCCccccCCccceEEeeCCeEEEEe------CCCCeEEEEEec
Confidence 00000 0001 24567789999999998854 345788999763
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=250.00 Aligned_cols=223 Identities=12% Similarity=0.188 Sum_probs=177.5
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CCceeeeccCCCCeeEEEeeecC--CCcEEEEe-cCCc
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--SSPLESCTSHQAPVTLVQSHLSG--ETQLLLSS-SSQD 1575 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--gk~l~tL~gHss~VtsLq~afSp--DG~lLaSS-sDgt 1575 (1922)
+.++.+|. +.|++++|+|+|++|++|+.|++|+|||+.+ ++++.++.+|..+|+++ .|++ ++++|+++ .|++
T Consensus 2 ~~~~~~h~-~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v--~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 2 VVIANAHN-EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp CEECCSCS-SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEE--EECCGGGCSEEEEEETTTE
T ss_pred ceeccCCc-CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEE--EecCCCcCCEEEEEcCCCE
Confidence 34678999 9999999999999999999999999999974 46788999999999999 7765 48888885 5999
Q ss_pred EEEeccCCCCCCcceEecc----ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCcee--eeeccccccccCCCCcc
Q 000177 1576 VHLWNASSIAGGPMHSFEG----CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLE--AKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~g----h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i--~tL~d~s~~~~~~gh~~ 1647 (1922)
|+|||+.+.....+..+.+ +++++|+|+ +.+|+++ +.|++|++||++++... ..+. .+...+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~---s~d~~v~~wd~~~~~~~~~~~~~-------~h~~~v 148 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA---SSDGKVSVVEFKENGTTSPIIID-------AHAIGV 148 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEEBCSSSCBCCEEEE-------CCSSCE
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEE---ECCCcEEEEEecCCCceeeeeee-------cccCcc
Confidence 9999998722235556655 378999997 8899999 88999999999876422 2222 123344
Q ss_pred eEEEEcCC-------------CCeEeecc-----EEEEcCCCc----ceeeeccCCCce-EEEEecCC---CEEEEEe--
Q 000177 1648 SQIHFSPS-------------DTMLLWNG-----ILWDRRNSV----PVHRFDQFTDHG-GGGFHPAG---NEVIINS-- 1699 (1922)
Q Consensus 1648 ~vVaFSPd-------------G~lLaSgg-----rLWDlrtgk----~I~kf~gh~~~V-sVaFSPdG---~~LASGS-- 1699 (1922)
..++|+|+ +++|++++ ++||+++++ .+..+.+|...| +++|+|++ .+|++++
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 55999997 56888877 999999876 567889999999 99999995 8999998
Q ss_pred ---EEEecCCCe---EEEEE--cCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1700 ---EVWDLRKFR---LLRSV--PSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1700 ---eIWDLrTgk---lL~tl--~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
+|||+++.. ....+ ..|.. ++++|+|+|++|+++..+
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 699998743 22233 34443 799999999999998643
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=256.36 Aligned_cols=227 Identities=15% Similarity=0.232 Sum_probs=194.2
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------CceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS------SPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg------k~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
....+..+.+..|. ..|.+++|+|+|.+|++|+.|+.|++|++... .....+.+|...|.++ .|+|++..|
T Consensus 93 ~~~~~~~~~~~~~~-~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l 169 (354)
T 2pbi_B 93 SFTTNKEHAVTMPC-TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC--SFTNSDMQI 169 (354)
T ss_dssp TTTCCEEEEEECSS-SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEE--EECSSSSEE
T ss_pred CCCCCcceEEecCC-CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEE--EEeCCCCEE
Confidence 34566677888898 89999999999999999999999999998654 2456778999999999 889999888
Q ss_pred EE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1569 LS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1569 aS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
++ +.|++|++||+.+ ++++.++.+| .++.|+| ++++|++| +.|++|++||+++++++.++.
T Consensus 170 ~t~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg---s~Dg~v~~wd~~~~~~~~~~~------- 237 (354)
T 2pbi_B 170 LTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSG---GCDKKAMVWDMRSGQCVQAFE------- 237 (354)
T ss_dssp EEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECCCSSCCEEEEE---ETTSCEEEEETTTCCEEEEEC-------
T ss_pred EEEeCCCcEEEEeCCC--CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE---eCCCeEEEEECCCCcEEEEec-------
Confidence 88 5699999999998 8888888876 5788887 57899999 889999999999999988875
Q ss_pred CCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC--Cce-EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1642 GRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--DHG-GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--~~V-sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
.+...+..++|+|++.+|++++ ++||+++++.+..+..+. ..+ ++.|+|+|.+|++++ +|||+.+++
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 1233455599999999999887 999999998887776543 234 899999999999998 599999999
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
.+.++.+|.. ++++|+|+|++|++++.+
T Consensus 318 ~~~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 318 RVSILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 9999999987 799999999999999643
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-24 Score=261.35 Aligned_cols=268 Identities=19% Similarity=0.318 Sum_probs=222.1
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgt 1575 (1922)
..+.+.++.+|. ..|++++|+|++++|++++.|++|++||. +++.+..+.+|...|+++ +|+|++++|+++ .|++
T Consensus 251 ~~~~~~~~~~~~-~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~--~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 251 NGQLLQTLTGHS-SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV--AFSPDGQTIASASDDKT 326 (577)
T ss_dssp TSCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSC
T ss_pred CCCEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEE--EECCCCCEEEEEeCCCe
Confidence 456778899999 99999999999999999999999999996 577888899999999999 899999999984 6999
Q ss_pred EEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|++||+.. ..+..+.+| ++++|+|++++|+++ +.|+.|++||. +++.+.++. .+...+..++
T Consensus 327 i~~w~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~dg~v~~~~~-~~~~~~~~~-------~~~~~v~~~~ 392 (577)
T 2ymu_A 327 VKLWNRNG---QHLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWNR-NGQLLQTLT-------GHSSSVRGVA 392 (577)
T ss_dssp EEEEETTS---CEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEEEEET-TCCEEEEEE-------CCSSCEEEEE
T ss_pred EEEEeCCC---CeeEEEeCCCCCEEEEEECCCCCEEEEE---eCCCEEEEEcC-CCCEEEEec-------CCCCCeEEEE
Confidence 99999864 455666654 789999999999999 88999999995 566666665 1233444599
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
|+|++++|++++ ++||. +++.+.++.+|...+ +++|+|++++|++++ ++||+ +++.+.++.+|..
T Consensus 393 ~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v 470 (577)
T 2ymu_A 393 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 470 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCE
Confidence 999999999876 89994 678889999999988 999999999999998 59996 5788889998876
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCC
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
++++|+|+|++|+++..+ ..+++|+. +.+.+.++.. ...|..++|+|++++|++..
T Consensus 471 ~~~~~spd~~~las~~~d-------------------~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--- 527 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDD-------------------KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--- 527 (577)
T ss_dssp EEEEECTTSCEEEEEETT-------------------SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE---
T ss_pred EEEEEcCCCCEEEEEeCC-------------------CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE---
Confidence 799999999999998532 34556663 3444555544 45699999999999998764
Q ss_pred CCCccceEEEEEe
Q 000177 1798 QEDMFSSARIYEI 1810 (1922)
Q Consensus 1798 s~d~dSsVRLyEV 1810 (1922)
.+..+++|+.
T Consensus 528 ---~dg~v~lwd~ 537 (577)
T 2ymu_A 528 ---DDKTVKLWNR 537 (577)
T ss_dssp ---TTSEEEEECT
T ss_pred ---CcCEEEEEeC
Confidence 3468999974
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=251.70 Aligned_cols=273 Identities=9% Similarity=0.126 Sum_probs=216.2
Q ss_pred cCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCC------ceeeecc----------CCCCeeEEEeeecC
Q 000177 1505 RDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDS----NSSS------PLESCTS----------HQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl----~tgk------~l~tL~g----------Hss~VtsLq~afSp 1563 (1922)
..|. +.|++++|+|+|+ +|++|+.||.|+||++ .+++ ....+.. |...|+++ .|+|
T Consensus 42 ~~~~-~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~ 118 (425)
T 1r5m_A 42 IVKL-DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCL--AWSH 118 (425)
T ss_dssp EEEC-SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEE--EECT
T ss_pred eecc-CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEE--EEcC
Confidence 3477 8999999999999 9999999999999999 8888 4444443 68899999 8899
Q ss_pred CCcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1564 ETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1564 DG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
++++|+++ .|+.|++||. + +..+..+.+| ++++|+|++++|+++ +.|+.|++||+.+++.+..+.....
T Consensus 119 ~~~~l~~~~~dg~i~i~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNK-T--GALLNVLNFHRAPIVSVKWNKDGTHIISM---DVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp TSSEEEEEETTSCEEEEET-T--SCEEEEECCCCSCEEEEEECTTSSEEEEE---ETTCCEEEEETTTTEEEEEECCC--
T ss_pred CCCEEEEEeCCCeEEEEeC-C--CCeeeeccCCCccEEEEEECCCCCEEEEE---ecCCeEEEEECCCCcEEEEeecccc
Confidence 99999985 5999999994 3 6777777764 789999999999999 7899999999999998887752110
Q ss_pred cc--------cCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----E
Q 000177 1639 NL--------TGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----E 1700 (1922)
Q Consensus 1639 ~~--------~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----e 1700 (1922)
.. ...+.....+.|+|++.+++.+. ++||+++++++..+..|...+ +++|+|++++|++++ .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 00 00001144589999877555443 999999999999999999888 999999999999998 5
Q ss_pred EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCc
Q 000177 1701 VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRC 1777 (1922)
Q Consensus 1701 IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~ 1777 (1922)
+||+++++.+..+.+|.. .++.|+|+| +++++.. +..+++|+..+...+..+.. ...
T Consensus 273 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-------------------d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 273 IWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSM-------------------DGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEET-------------------TSEEEEEETTTTEEEEEEECTTCC
T ss_pred EEECCCCccceEecCCCccEEEEEECCCC-EEEEEeC-------------------CCcEEEEECCCCcEeEecccCCcc
Confidence 999999999999987766 799999999 7777742 34567788777777777765 567
Q ss_pred eEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|..++|+|++.++++.. .++.+++|++..
T Consensus 333 i~~~~~s~~~~~l~~~~------~dg~i~i~~~~~ 361 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAF------MDGQVNVYDLKK 361 (425)
T ss_dssp EEEEEECTTSSEEEEEE------TTSCEEEEECHH
T ss_pred EEEEEEcCCCCEEEEEE------CCCeEEEEECCC
Confidence 99999999999998764 246799998754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=249.24 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=211.5
Q ss_pred ecCCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCceeeecc-----CCCCeeEEEeeecCC----CcEEEE
Q 000177 1504 CRDDAGALLTCITFLGD----SSHIAVGSHTKELKIFDSNSSSPLESCTS-----HQAPVTLVQSHLSGE----TQLLLS 1570 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPD----G~lLASGS~DGtIkIWDl~tgk~l~tL~g-----Hss~VtsLq~afSpD----G~lLaS 1570 (1922)
..+|. +.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|+++ +|+|+ +.+|++
T Consensus 14 ~~~h~-~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 14 KEDHN-QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTC--AWTYDSNTSHPLLAV 90 (366)
T ss_dssp ECTTC-SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEE--EEEECTTTCCEEEEE
T ss_pred ecCCC-CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEE--EeccCCCCCCCEEEE
Confidence 34799 99999999984 45777777788999999998887776653 56789999 77877 668888
Q ss_pred -ecCCcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1571 -SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1571 -SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+.|++|++||+.+ ++++..+.+| ++++|+| ++++|+++ +.|+.|++||+++++.+..+.. ...+.
T Consensus 91 ~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~----~~~~~ 161 (366)
T 3k26_A 91 AGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSV---SKDHALRLWNIQTDTLVAIFGG----VEGHR 161 (366)
T ss_dssp EETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTTEEEEE---ETTSCEEEEETTTTEEEEEECS----TTSCS
T ss_pred ecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCCEEEEE---eCCCeEEEEEeecCeEEEEecc----ccccc
Confidence 4699999999998 7788888764 7899999 89999999 8899999999999998887730 01123
Q ss_pred CcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc----------------------------CCCce-EEEEec
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ----------------------------FTDHG-GGGFHP 1690 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g----------------------------h~~~V-sVaFSP 1690 (1922)
..+..++|+|++++|++++ ++||+++++.+..+.. |...+ ++.|+
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 240 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL- 240 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence 4455599999999999887 9999998876655544 77777 99999
Q ss_pred CCCEEEEEe-----EEEecCCCe--------------EEEEEcCCCc--eeEEEccC--CCEEEEEEccCchhhhhhhcc
Q 000177 1691 AGNEVIINS-----EVWDLRKFR--------------LLRSVPSLDQ--TTITFNAR--GDVIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1691 dG~~LASGS-----eIWDLrTgk--------------lL~tl~gH~~--~sVaFSPd--G~~LaSgs~~d~~dv~s~lh~ 1747 (1922)
+++|++++ ++||++++. .+..+.+|.. ++++|+|+ |.+|+++..+
T Consensus 241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d----------- 308 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV----------- 308 (366)
T ss_dssp -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT-----------
T ss_pred -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC-----------
Confidence 77999998 599998864 4778887765 79999999 9999998422
Q ss_pred cccccCCcceEEEEecCCCcee----eeecc---CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1748 RRVKHPLFAAFRTVDAINYSDI----ATIPV---DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1748 rr~ksp~~ssFrt~Da~dys~I----aTidv---kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+++|+..+...+ ..+.. ...|..++|+|++.++++.. .++.+++|++.
T Consensus 309 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~iwd~~ 365 (366)
T 3k26_A 309 --------GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC------DDASIWRWDRL 365 (366)
T ss_dssp --------SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE------TTSEEEEEEC-
T ss_pred --------CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe------CCCEEEEEEec
Confidence 34566665554322 23443 36799999999999998764 34789999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-24 Score=255.02 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=224.4
Q ss_pred eeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEE
Q 000177 1500 PWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1500 pirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVk 1577 (1922)
+..++++|. .. ++|+.| ++++|++|+.||+|++||+.+++.+.++.+|...|+++ .|++++ +|++ +.|++|+
T Consensus 113 ~~~~l~~h~-~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l--~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHM-TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL--KYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCS-SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EECSTT-EEEEEETTSCEE
T ss_pred ceEEEcCCC-CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEE--EEcCCC-EEEEEeCCCCEE
Confidence 456789998 55 577777 46799999999999999999999999999999999999 788888 5555 6799999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEc--CCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc--------------c
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFS--NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT--------------S 1637 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFS--PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~--------------s 1637 (1922)
+||+.+ ++++..+.+| .+++|+ +++++++++ +.|++|++||++++......... .
T Consensus 187 vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 187 VWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp EEETTT--TEEEEEECCCSSCEEEEEEEESSSCEEEEEE---ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred EEECCC--CcEEEEECCCCCccEEEEEecCCCCCEEEEE---cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 999998 7788888765 678888 577899999 88999999999987654321100 0
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
......+|...+.+++++++++++++ ++||+++++++..+.+|...+ +++|+|++++|++++ ++||+++
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 262 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 01122467788888899999999887 999999999999999999988 999999999999998 5999999
Q ss_pred CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEc
Q 000177 1707 FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATE 1784 (1922)
Q Consensus 1707 gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~S 1784 (1922)
++++.++.+|.. .++.|+ +.+|+++. .+..+++|+..+............+..++++
T Consensus 342 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 400 (464)
T 3v7d_B 342 GELMYTLQGHTALVGLLRLS--DKFLVSAA-------------------ADGSIRGWDANDYSRKFSYHHTNLSAITTFY 400 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEC--SSEEEEEE-------------------TTSEEEEEETTTCCEEEEEECTTCCCEEEEE
T ss_pred CcEEEEEeCCCCcEEEEEEc--CCEEEEEe-------------------CCCcEEEEECCCCceeeeecCCCCccEEEEE
Confidence 999999999887 678887 57888885 2345778888777777777667778889999
Q ss_pred CCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1785 RTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1785 Pdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
+++.++++.. ++.+++|++...
T Consensus 401 ~~~~~l~~~~-------dg~i~iwd~~~g 422 (464)
T 3v7d_B 401 VSDNILVSGS-------ENQFNIYNLRSG 422 (464)
T ss_dssp ECSSEEEEEE-------TTEEEEEETTTC
T ss_pred eCCCEEEEec-------CCeEEEEECCCC
Confidence 9999888652 367999997543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-26 Score=264.41 Aligned_cols=217 Identities=11% Similarity=0.133 Sum_probs=173.8
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--CceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS--SPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg--k~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
+..|. +.|++++|+|+|++|++|+.|+.|+|||+.++ +.+.++.+|...|+++ .|+|++++|+++ .|++|+|||
T Consensus 7 ~~~~~-~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILP-KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCV--DWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECS-SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEE--EECTTTCCEEEEETTSSEEEC-
T ss_pred EecCC-CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEE--EEeCCCCEEEEEeCCCeEEEEE
Confidence 34466 78999999999999999999999999999988 7788899999999999 889999999885 599999999
Q ss_pred cCCCCCC---cceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce---eeeeccccccccCCCCcceEE
Q 000177 1581 ASSIAGG---PMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL---EAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1581 l~t~~gk---~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~---i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
+.+ +. +...+.+| ++++|+|++++|+++ +.|++|++||+++++. ...+. ..+...+..+
T Consensus 84 ~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~------~~h~~~v~~~ 152 (377)
T 3dwl_C 84 KRP--DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG---SGARVISVCYFEQENDWWVSKHLK------RPLRSTILSL 152 (377)
T ss_dssp -------CCCCEEECCCCSSCEEEEECCTTSSCCEEE---ESSSCEEECCC-----CCCCEEEC------SSCCSCEEEE
T ss_pred cCC--CCceeeeeEecccCCceEEEEECCCCCEEEEE---ecCCeEEEEEECCcccceeeeEee------cccCCCeEEE
Confidence 987 44 45555543 889999999999999 7899999999998873 45554 0123345559
Q ss_pred EEcCCCCeEeecc-----EEEEcC------------------CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EE
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRR------------------NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EV 1701 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlr------------------tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eI 1701 (1922)
+|+|++++|++++ ++||++ .++++..+ +|...+ +++|+|+|++|++++ ++
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 9999999999877 899995 35567777 888888 999999999999998 49
Q ss_pred EecCCCeE----EEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1702 WDLRKFRL----LRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1702 WDLrTgkl----L~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
||+++++. +.++.+|.. ++++|+|+|++|+++..
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC
Confidence 99999887 778888876 89999999999998843
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-24 Score=250.18 Aligned_cols=220 Identities=18% Similarity=0.335 Sum_probs=176.9
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
..+..++.+|. ..|++++|+|++.+|++|+.|++|+|||+.+++.+.++.+|...|+++ +|+|++++|+++ .|++|
T Consensus 66 ~~~~~~l~~h~-~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v--~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 66 GIPHKALTGHN-HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV--AFSPDNRQILSAGAEREI 142 (343)
T ss_dssp EEEEEEECCCS-SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEE--EECSSTTEEEEEETTSCE
T ss_pred ccccchhccCC-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEE--EECCCCCEEEEEcCCCEE
Confidence 35677899999 999999999999999999999999999999999999999999999999 899999999985 69999
Q ss_pred EEeccCCCCCCcceEec---c----ceeEEEcCCC----------CEEEEeecCCCCCeEEEEECCCCceeeeecccccc
Q 000177 1577 HLWNASSIAGGPMHSFE---G----CKAARFSNSG----------NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVN 1639 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~---g----h~sVaFSPDG----------~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~ 1639 (1922)
++||+.. .....+. + +.+++|+|++ .+|+++ +.|++|++||. +++...++.
T Consensus 143 ~~wd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~-~~~~~~~~~----- 210 (343)
T 2xzm_R 143 KLWNILG---ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV---GWDGRLKVWNT-NFQIRYTFK----- 210 (343)
T ss_dssp EEEESSS---CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE---ETTSEEEEEET-TTEEEEEEE-----
T ss_pred EEEeccC---CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEE---cCCCEEEEEcC-CCceeEEEc-----
Confidence 9999974 2222222 2 4789999986 789998 88999999994 455555554
Q ss_pred ccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC-CcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCe
Q 000177 1640 LTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN-SVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFR 1708 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt-gk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgk 1708 (1922)
.+...+..++|+|+|++|++++ ++||++. ..+...+. +...+ +++|+|++.++++++ ++||+.+++
T Consensus 211 --~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 211 --AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS 287 (343)
T ss_dssp --CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred --CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 1233445599999999999887 8999954 44555553 33446 999999999998877 699998876
Q ss_pred EEE--EEc-----------CCCc--eeEEEccCCCEEEEEEc
Q 000177 1709 LLR--SVP-----------SLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1709 lL~--tl~-----------gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
... ++. +|.. ++++|+|+|++|+++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 329 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence 543 443 4443 79999999999999853
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=253.44 Aligned_cols=282 Identities=12% Similarity=0.107 Sum_probs=211.1
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
....+...++..|. .+....|++++++|++|+.||.|+|||+.+++....+.+|...|+++ .|+|++++|+++ .|
T Consensus 85 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~s~d 160 (420)
T 3vl1_A 85 TIIRDGSKMLKRAD--YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL--KFFPSGEALISSSQD 160 (420)
T ss_dssp CCSEETTTTSCSCC--EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE--EECTTSSEEEEEETT
T ss_pred ecccceeeEEecCC--ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE--EECCCCCEEEEEeCC
Confidence 34444445555553 45566789999999999999999999999999888889999999999 889999999985 59
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc---------
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL--------- 1640 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~--------- 1640 (1922)
++|++||+.+ ++++..+.+| ++++|+|++++|+++ +.|++|++||+++++.+..+.......
T Consensus 161 ~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 235 (420)
T 3vl1_A 161 MQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDRGRNVLSA---SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235 (420)
T ss_dssp SEEEEEETTT--CCCCEEEECCSSCEEEEEEETTTTEEEEE---ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred CeEEEEeCCC--CcCceEEcCCCCcEEEEEEcCCCCEEEEE---cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence 9999999998 7788888765 789999999999999 889999999999999988875211000
Q ss_pred --------cCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEecCCC-EEEEEe-----
Q 000177 1641 --------TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGN-EVIINS----- 1699 (1922)
Q Consensus 1641 --------~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~-~LASGS----- 1699 (1922)
..+......++|+|++++|++++ ++||+++++.+..+.. |...+ +++|+|++. +|++++
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 00012222366789999999877 9999999988777754 66667 999999999 999998
Q ss_pred EEEecCCCe-EEEEEcCCCc---eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC----------
Q 000177 1700 EVWDLRKFR-LLRSVPSLDQ---TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN---------- 1765 (1922)
Q Consensus 1700 eIWDLrTgk-lL~tl~gH~~---~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d---------- 1765 (1922)
++||+++++ ++..+.+|.. +++ +.++|.+|+++..+. .+++|+..+
T Consensus 316 ~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~-------------------~v~iw~~~~~~~~~~~~~~ 375 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDT-------------------SIKLDIISDPESERPAIEF 375 (420)
T ss_dssp EEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTE-------------------EEEEEEECCTTCCSCEECT
T ss_pred EEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCc-------------------cEEEEeccCCCCCccceec
Confidence 599999874 4777776433 556 556788888884322 334444322
Q ss_pred CceeeeeccCCceEEEEEcCCCc---eEEEEecCCCCCccceEEEEEec
Q 000177 1766 YSDIATIPVDRCVLDFATERTDS---FVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1766 ys~IaTidvkr~I~dLa~SPdds---~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
............|.+++|+|++. .+.++. ..+.+.+|.+.
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g------~~g~~~~~~~~ 418 (420)
T 3vl1_A 376 ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG------KNNFCALYNLS 418 (420)
T ss_dssp TSCEEECCSSCCCCEEEEECCSSSSCEEEEEE------TTTEEEEEESC
T ss_pred cCccEEccCCcceEEEEEccCCCCcceEEEEc------CCceEEEEecc
Confidence 11112223356799999999998 455443 23578999863
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-24 Score=245.59 Aligned_cols=293 Identities=10% Similarity=0.097 Sum_probs=204.2
Q ss_pred EEecCCCCCCEEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCC---CcEEEEe-c
Q 000177 1502 RTCRDDAGALLTCITFLGDSS-HIAVGSH---TKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGE---TQLLLSS-S 1572 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~-lLASGS~---DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpD---G~lLaSS-s 1572 (1922)
+.+++|. +.|++++|+|++. ++++|+. ||.|+|||+.+++..... .+|...|+++ .|+|+ +.+|+++ .
T Consensus 12 ~~~~~h~-~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 12 HIQKGFN-YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCG--TFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEECS-SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEE--ECTTCCTTTCCEEEEET
T ss_pred hhccCCC-CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEE--EEcCCCCCCceEEEecC
Confidence 4557899 9999999999996 5556766 999999999998876554 4899999999 88998 6888875 5
Q ss_pred CCcEEEeccCCCCCC-cceEeccc----eeE------EEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccc
Q 000177 1573 SQDVHLWNASSIAGG-PMHSFEGC----KAA------RFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNL 1640 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk-~l~tf~gh----~sV------aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~ 1640 (1922)
|+.|++||+.+ ++ ++..+.+| .++ +|+|++++|+++ +.|+.|++||+++++ .+..+....
T Consensus 89 dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~---~~d~~i~vwd~~~~~~~~~~~~~~~--- 160 (357)
T 3i2n_A 89 GGNLHIWNLEA--PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG---SRDGTVKVWDPRQKDDPVANMEPVQ--- 160 (357)
T ss_dssp TSCEEEECTTS--CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEE---ETTSCEEEECTTSCSSCSEEECCCT---
T ss_pred CCeEEEEeCCC--CCccEEEEEecccceEEEeeccccccCCCccEEEEE---eCCCeEEEEeCCCCCCcceeccccC---
Confidence 99999999997 55 77777765 556 567899999999 889999999999887 566664110
Q ss_pred cCCCCcceEEE----EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEec---CCCEEEEEe-----EEE
Q 000177 1641 TGRGHAYSQIH----FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHP---AGNEVIINS-----EVW 1702 (1922)
Q Consensus 1641 ~~~gh~~~vVa----FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSP---dG~~LASGS-----eIW 1702 (1922)
.........+. |+|+++++++++ ++||+++++.+.. ..|...+ ++.|+| ++.+|++++ .+|
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 00011334455 789999999876 9999999887554 5566677 999999 999999998 599
Q ss_pred ecCCCeEEEEEc-----CCCc--eeEEEccCCC-EEEEEEccCchhhhhhhcccccccCC--cceEEEEecCCCceeeee
Q 000177 1703 DLRKFRLLRSVP-----SLDQ--TTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPL--FAAFRTVDAINYSDIATI 1772 (1922)
Q Consensus 1703 DLrTgklL~tl~-----gH~~--~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~--~ssFrt~Da~dys~IaTi 1772 (1922)
|+++++.+..+. +|.. ++++|+|+|. +++++..+....++ .+......... ..... .....+..+.++
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 317 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW-KYEYPIQRSKKDSEGIEM-GVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE-EEECCSCC--CCTTSCCC-CCCCEEEEEEEE
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe-ecCCCcccccccCCCCcc-ccccccceeecc
Confidence 998876554443 7766 8999999999 77777544322222 11100000000 00000 000011233333
Q ss_pred cc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1773 PV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1773 dv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.. ...|.+++|+|++.++++.. ..+..+++|++.+.
T Consensus 318 ~~~~~~v~~~~~s~~~~~l~~s~-----~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 318 TLSTQPISSLDWSPDKRGLCVCS-----SFDQTVRVLIVTKL 354 (357)
T ss_dssp ECCSSCEEEEEECSSSTTEEEEE-----ETTSEEEEEEECC-
T ss_pred ccCCCCeeEEEEcCCCCeEEEEe-----cCCCcEEEEECCCc
Confidence 33 45699999999999998532 23478999998653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=256.53 Aligned_cols=227 Identities=16% Similarity=0.256 Sum_probs=187.4
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-------ceeeeccCCCCeeEEEeeecCCC
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-------PLESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-------~l~tL~gHss~VtsLq~afSpDG 1565 (1922)
|.....+...++++|. ..|++++|+|+|++|++|+.|+.|+|||+.+.. ....+.+|.+.|.++ .|+|++
T Consensus 93 Wd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~--~~~~~~ 169 (380)
T 3iz6_a 93 WNALTSQKTHAIKLHC-PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC--QYVPDQ 169 (380)
T ss_dssp EETTTTEEEEEEECCC-TTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCC--BCCSSS
T ss_pred EECCCCccceEEecCC-CCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEE--EEecCC
Confidence 3345677888999999 999999999999999999999999999996532 345778999999999 778863
Q ss_pred -cEEEE-ecCCcEEEeccCCCCCCcceEe-----ccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECC-CCceeee
Q 000177 1566 -QLLLS-SSSQDVHLWNASSIAGGPMHSF-----EGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQ-TYQLEAK 1632 (1922)
Q Consensus 1566 -~lLaS-SsDgtVkLWDl~t~~gk~l~tf-----~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~t 1632 (1922)
..|++ +.|++|++||+.+ ++++..+ .+| .++.|++ ++++|++| +.|++|++||++ ++..+.+
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg---s~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTT--GQRISIFGSEFPSGHTADVLSLSINSLNANMFISG---SCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp SSCEEEECTTSCEEEECTTT--CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE---ETTSCEEEEETTTTCCCCEE
T ss_pred CCEEEEECCCCcEEEEEcCC--CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE---ECCCeEEEEECCCCCcceEE
Confidence 45666 5699999999998 7777666 333 6788977 78999999 889999999998 4466666
Q ss_pred eccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC-------ce-EEEEecCCCEEEEEe
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD-------HG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~-------~V-sVaFSPdG~~LASGS 1699 (1922)
+. ++...+..++|+|++++|++++ ++||+++++++..+..+.. .+ +++|+|+|++|++|+
T Consensus 245 ~~-------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 317 (380)
T 3iz6_a 245 YH-------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY 317 (380)
T ss_dssp EC-------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred EC-------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE
Confidence 64 2233455699999999999988 9999999998888865432 24 899999999999998
Q ss_pred -----EEEecCCCeEEEEE----cCCCc--eeEEEccCCCEEEEEE
Q 000177 1700 -----EVWDLRKFRLLRSV----PSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -----eIWDLrTgklL~tl----~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
.+||+.+++.+..+ .+|.. ++++|+|+|.+|++++
T Consensus 318 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 59999999988887 46665 8999999999999995
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=255.31 Aligned_cols=218 Identities=13% Similarity=0.194 Sum_probs=174.1
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee----eeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE----SCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~----tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
...+|. ..|++++|+|++. +++++.||+|+|||+.+++... ...+|...|++| +|+|++++|+++ .|++|+
T Consensus 89 ~~~~~~-~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v--~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 89 AGVQTE-AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL--SVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp EEEECS-SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEE--EECSSSSEEEEEETTSCEE
T ss_pred ccCCCC-CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE--EECCCCCEEEEEeCCCeEE
Confidence 345688 8999999999975 5578899999999998886543 345899999999 899999999985 599999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
|||+.+ ++++..+.+| ++++|+|++. +++++ +.|++|++||+++++....+. ...+......++|
T Consensus 165 iwd~~~--~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~---~~dg~v~~wd~~~~~~~~~~~-----~~~~~~~v~~v~~ 234 (357)
T 4g56_B 165 VWDLSQ--KAVLKSYNAHSSEVNCVAACPGKDTIFLSC---GEDGRILLWDTRKPKPATRID-----FCASDTIPTSVTW 234 (357)
T ss_dssp EEETTT--TEEEEEECCCSSCEEEEEECTTCSSCEEEE---ETTSCEEECCTTSSSCBCBCC-----CTTCCSCEEEEEE
T ss_pred EEECCC--CcEEEEEcCCCCCEEEEEEccCCCceeeee---ccCCceEEEECCCCceeeeee-----eccccccccchhh
Confidence 999998 7888888775 7899999875 67887 789999999999988776553 0112233455999
Q ss_pred cCCC-CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCC-CEEEEEe-----EEEecCCCeEEEEEcCCCc-
Q 000177 1653 SPSD-TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG-NEVIINS-----EVWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1653 SPdG-~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG-~~LASGS-----eIWDLrTgklL~tl~gH~~- 1718 (1922)
+|++ .+|++++ ++||+++++++.++.+|...+ +++|+|++ ++|++++ +|||++++++++.+ +|..
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~ 313 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF 313 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC
Confidence 9986 5666655 899999999999999999998 99999997 5788888 59999999988765 5766
Q ss_pred -eeEEEcc-CCCEEEEEEc
Q 000177 1719 -TTITFNA-RGDVIYAILR 1735 (1922)
Q Consensus 1719 -~sVaFSP-dG~~LaSgs~ 1735 (1922)
++|+|+| ++.+|++++.
T Consensus 314 V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 314 VTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp EEEEEECSSSTTEEEEEET
T ss_pred EEEEEEeCCCCCEEEEEcC
Confidence 8999999 7999999863
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=256.74 Aligned_cols=229 Identities=14% Similarity=0.170 Sum_probs=179.8
Q ss_pred CceeeEEe-cCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CC---ceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1497 RFRPWRTC-RDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNS---SS---PLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1497 rfrpirtL-rgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~t---gk---~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
..+.+.++ .+|. +.|++++|+| ++++|++|+.||+|+|||+.+ +. ....+ +|...|+++ .|+|++++|
T Consensus 51 ~g~~~~~~~~~h~-~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~--~~~~~~~~l 126 (437)
T 3gre_A 51 RGKLIATLMENEP-NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQI--TMIPNFDAF 126 (437)
T ss_dssp CCCEEEEECTTTT-SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEE--EECTTSSEE
T ss_pred cceEEeeeccCCC-CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEE--EEeCCCCEE
Confidence 45667788 8899 9999999999 999999999999999999876 43 22333 599999999 889999999
Q ss_pred EEe-cCCcEEEeccCCC-CCCcceEeccc--eeEE----------------EcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1569 LSS-SSQDVHLWNASSI-AGGPMHSFEGC--KAAR----------------FSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1569 aSS-sDgtVkLWDl~t~-~gk~l~tf~gh--~sVa----------------FSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
+++ .|++|++||+... .++.+..+.++ ..+. |++++++|+++ +.|+.|++||+++++
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL---TNLSRVIIFDIRTLE 203 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE---ETTSEEEEEETTTCC
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE---eCCCeEEEEeCCCCe
Confidence 885 5999999999520 14444443322 2233 55679999999 889999999999999
Q ss_pred eeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-cCCCce-EEEEe----cCCCEEEE
Q 000177 1629 LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-QFTDHG-GGGFH----PAGNEVII 1697 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-gh~~~V-sVaFS----PdG~~LAS 1697 (1922)
++.++..+ .+...+..++|+|++++|++++ ++||+++++++..+. .|...+ +++|+ |++.+|++
T Consensus 204 ~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s 278 (437)
T 3gre_A 204 RLQIIENS-----PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG 278 (437)
T ss_dssp EEEEEECC-----GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred eeEEEccC-----CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence 99888610 0123445599999999999887 999999999999886 666677 88555 56889999
Q ss_pred Ee-----EEEecCCCeEEEEEcCCC----------------------------ceeEEEccCCCEEEEEEccCc
Q 000177 1698 NS-----EVWDLRKFRLLRSVPSLD----------------------------QTTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~gH~----------------------------~~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
++ +|||+++++++.++.+|. .++++|+ ++.+|+++..+..
T Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~ 351 (437)
T 3gre_A 279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS 351 (437)
T ss_dssp ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence 98 599999999999888663 1578888 7788888854443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=285.82 Aligned_cols=288 Identities=16% Similarity=0.240 Sum_probs=226.6
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEecc
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNA 1581 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl 1581 (1922)
++.+|. +.|++++|+|+|++|++|+.||+|+|||+.+++.+.++.+|...|+++ +|+|++++|+++ .|++|+|||+
T Consensus 610 ~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 610 VVRPHT-DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCC--AFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp EECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEET
T ss_pred EEeccc-ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEE--EEecCCCEEEEEeCCCeEEEEEC
Confidence 578999 999999999999999999999999999999999999999999999999 899999999995 5999999999
Q ss_pred CCCCCCcceEeccc----eeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1582 SSIAGGPMHSFEGC----KAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1582 ~t~~gk~l~tf~gh----~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
.+ ++++.++.+| ++++|+| ++.+++++ +.|++|++||+.+++++.++. ++...+..++|+|+
T Consensus 687 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg---~~d~~v~vwd~~~~~~~~~~~-------~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 687 AT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATG---SNDFFLKLWDLNQKECRNTMF-------GHTNSVNHCRFSPD 754 (1249)
T ss_dssp TT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEE---ETTSCEEEEETTSSSEEEEEC-------CCSSCEEEEEECSS
T ss_pred CC--CceEEEEcCCCCcEEEEEEecCCCceEEEEE---eCCCeEEEEECCCcchhheec-------CCCCCEEEEEEecC
Confidence 98 8888888775 7899999 45678888 889999999999999988875 12333445999999
Q ss_pred CCeEeecc-----EEEEcCCCcceeeec----------------------------------------------------
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFD---------------------------------------------------- 1678 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~---------------------------------------------------- 1678 (1922)
++++++++ ++||+++++.+..+.
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 99999877 899988765443321
Q ss_pred ---cCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcc
Q 000177 1679 ---QFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1679 ---gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~ 1747 (1922)
+|...+ ++.|+|++.++++++ ++||+.++..+..+.+|.. ++++|+|+|.+|++++.+....+|.....
T Consensus 835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 455556 899999999999998 5999999999999999987 89999999999999876554333321100
Q ss_pred cc---------------------------------------------------ccc---------CCcceEEEEecCCCc
Q 000177 1748 RR---------------------------------------------------VKH---------PLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1748 rr---------------------------------------------------~ks---------p~~ssFrt~Da~dys 1767 (1922)
.. ..+ .....+++|+..+..
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 00 000 012234555555555
Q ss_pred eeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1768 DIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1768 ~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+..+.. ...|..++|+|++.++++.. .++.+++|++.
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~------~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADGKTLISSS------EDSVIQVWNWQ 1033 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSSSCEEEEC------SSSBEEEEETT
T ss_pred eeeecccCCCceEEEEECCCCCEEEEEc------CCCEEEEEECC
Confidence 5554443 45699999999999988663 24667888764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-24 Score=238.99 Aligned_cols=228 Identities=14% Similarity=0.194 Sum_probs=183.3
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecC--CCcEEEEe-cCC
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSG--ETQLLLSS-SSQ 1574 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSp--DG~lLaSS-sDg 1574 (1922)
+.+.+|. +.|++++|+|++++|++|+.||+|+|||+.++. ....+.+|...|+++ .|+| ++++|+++ .|+
T Consensus 5 ~~~~gH~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 5 PFDSGHD-DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI--DWASPEYGRIIASASYDK 81 (351)
T ss_dssp CEECCCS-SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEE--EECCGGGCSEEEEEETTS
T ss_pred ccCcccc-cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEE--EEcCCCCCCEEEEEcCCC
Confidence 3467999 999999999999999999999999999998763 566778999999999 7888 68888885 599
Q ss_pred cEEEeccCCCCC-------CcceEeccc----eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccc-----
Q 000177 1575 DVHLWNASSIAG-------GPMHSFEGC----KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDT----- 1636 (1922)
Q Consensus 1575 tVkLWDl~t~~g-------k~l~tf~gh----~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~----- 1636 (1922)
+|++||+..... +++..+.+| .+++|+|+ +++|+++ +.|+.|++||+++++.+..+...
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL---GNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe---cCCCcEEEecCCChHHhccccccccccc
Confidence 999999987211 335556554 78999999 9999999 88999999999988866554310
Q ss_pred -cccccCCCCcceEEEEcCC---CCeEeecc-----EEEEcCCCcc--eeeeccCCCce-EEEEecCC----CEEEEEe-
Q 000177 1637 -SVNLTGRGHAYSQIHFSPS---DTMLLWNG-----ILWDRRNSVP--VHRFDQFTDHG-GGGFHPAG----NEVIINS- 1699 (1922)
Q Consensus 1637 -s~~~~~~gh~~~vVaFSPd---G~lLaSgg-----rLWDlrtgk~--I~kf~gh~~~V-sVaFSPdG----~~LASGS- 1699 (1922)
......+......++|+|+ +.++++++ .+|+...++. +..+.+|...+ +++|+|++ ++|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 1111123345566999997 88888777 5666666654 77888999888 99999998 8999998
Q ss_pred ----EEEecCCC----------------------------------------------eEEEEEcCCCc--eeEEEccCC
Q 000177 1700 ----EVWDLRKF----------------------------------------------RLLRSVPSLDQ--TTITFNARG 1727 (1922)
Q Consensus 1700 ----eIWDLrTg----------------------------------------------klL~tl~gH~~--~sVaFSPdG 1727 (1922)
++||++++ +++..+.+|.. ++++|+|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 59999875 67788888866 899999999
Q ss_pred CEEEEEEc
Q 000177 1728 DVIYAILR 1735 (1922)
Q Consensus 1728 ~~LaSgs~ 1735 (1922)
++|+++..
T Consensus 319 ~~l~s~~~ 326 (351)
T 3f3f_A 319 TILSSAGD 326 (351)
T ss_dssp CCEEEEET
T ss_pred CEEEEecC
Confidence 99999853
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=248.21 Aligned_cols=264 Identities=10% Similarity=0.097 Sum_probs=202.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCCce----------eeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTK-------ELKIFDSNSSSPL----------ESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DG-------tIkIWDl~tgk~l----------~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
.+|+|++|+|||++|++|+.+. .|+||++..+... ..+.+|...|.++ ++ ++.+++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~--~~--~~~~~~~g~ 90 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAI--DA--SKGIILVGC 90 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEE--EE--ETTEEEEEC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEE--Ee--CCCEEEEEE
Confidence 5899999999999999998654 4999999765421 2467899999998 55 45566653
Q ss_pred -----------cCCcEEEeccCCCCCCc--ceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1572 -----------SSQDVHLWNASSIAGGP--MHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1572 -----------sDgtVkLWDl~t~~gk~--l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
.|+++++|++....... +..... .++++|+|||+++++++ ++.|++|+|||+.++++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as-~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS-SKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE-SCSSCEEEEEETTTTEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE-CCCCCEEEEeECCCCcE
Confidence 26789999987621111 111111 26799999999987653 26799999999999999
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceee--eccCCCce-EEEEecCCCEEEEEe---
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHR--FDQFTDHG-GGGFHPAGNEVIINS--- 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~k--f~gh~~~V-sVaFSPdG~~LASGS--- 1699 (1922)
+..+. +.+.+..++|+|+|+++++++ .+|+..+++.+.. ...|...+ +++|+|+|+++++++
T Consensus 170 ~~~~~--------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 170 KFEIE--------TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK 241 (365)
T ss_dssp EEEEE--------CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred EEEeC--------CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 88875 345567799999999999877 8888888876543 34566667 899999999999987
Q ss_pred ------EEEecCCCeE----EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1700 ------EVWDLRKFRL----LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1700 ------eIWDLrTgkl----L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
.+|++..... ...+.+|.. ++++|||+|++|++++ .+..+++||..+.+
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs-------------------~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS-------------------NDNSIALVKLKDLS 302 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE-------------------TTSCEEEEETTTTE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc-------------------CCCEEEEEECCCCc
Confidence 3688876543 345667765 8999999999999995 23457889998988
Q ss_pred eeeeec-c-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1768 DIATIP-V-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1768 ~IaTid-v-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+.++. . ...|.+++|+|++++|+.. ..|.+||||++.
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~------S~D~tvrvw~ip 342 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPDSTYVASV------SAANTIHIIKLP 342 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTTSCEEEEE------ETTSEEEEEECC
T ss_pred EEEEecCcccCCEEEEEECCCCCEEEEE------eCCCeEEEEEcC
Confidence 888763 3 5679999999999999965 356899999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=246.60 Aligned_cols=220 Identities=14% Similarity=0.171 Sum_probs=173.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
..+|. ..|++++|+|+|++|++|+.|++|+||++.++. ++.++.+|...|+++ +|+|++++|+++ .|++|++||
T Consensus 57 ~~~h~-~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v--~~sp~~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 57 SEGHQ-RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV--AWAPSGNLLATCSRDKSVWVWE 133 (345)
T ss_dssp CSSCS-SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEEEEE
T ss_pred ccccC-CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEE--EEeCCCCEEEEEECCCeEEEEE
Confidence 36899 999999999999999999999999999998764 567889999999999 889999999995 599999999
Q ss_pred cCCCCC-CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcceEEEEc
Q 000177 1581 ASSIAG-GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1581 l~t~~g-k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
+..... .++..+.+| .+++|+|++++|+++ +.|++|++||+++++. ..++. ++...+..++|+
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~i~~w~~~~~~~~~~~~~~-------~h~~~v~~l~~s 203 (345)
T 3fm0_A 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA---SYDDTVKLYREEEDDWVCCATLE-------GHESTVWSLAFD 203 (345)
T ss_dssp ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE---ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEEC
T ss_pred CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE---eCCCcEEEEEecCCCEEEEEEec-------CCCCceEEEEEC
Confidence 986211 234455554 789999999999999 8899999999988753 34443 122334459999
Q ss_pred CCCCeEeecc-----EEEEcCCC---------------cceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1654 PSDTMLLWNG-----ILWDRRNS---------------VPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtg---------------k~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
|+|++|++++ ++||.... +++.++.+ |...+ +++|+|++..|++++ ++|+..+
T Consensus 204 p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 9999999887 99997532 23445555 66667 999999999999998 6999875
Q ss_pred Ce--------E-EEEEcCCCc--eeEEEccCCC-EEEEEEcc
Q 000177 1707 FR--------L-LRSVPSLDQ--TTITFNARGD-VIYAILRR 1736 (1922)
Q Consensus 1707 gk--------l-L~tl~gH~~--~sVaFSPdG~-~LaSgs~~ 1736 (1922)
.. . .+...+|.. ++|+|+|++. +|++++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 284 NSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp TSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC
Confidence 42 1 222346765 8999999985 88888543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=250.62 Aligned_cols=222 Identities=14% Similarity=0.216 Sum_probs=170.2
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecC--CCcEEEE-ecCCcEE
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSG--ETQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSp--DG~lLaS-SsDgtVk 1577 (1922)
++.+|. +.|++++|+|+|++|++|+.|++|+|||+.++. .+.++.+|..+|+++ +|++ ++++|++ +.|++|+
T Consensus 8 ~~~~H~-~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v--~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHE-DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV--AWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEE--EECCGGGSSCEEEEETTSCEE
T ss_pred eccccc-CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEE--EeCCCCCCCEEEEEECCCEEE
Confidence 457899 999999999999999999999999999998775 467889999999999 7765 4788888 4699999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ceE
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YSQ 1649 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~v 1649 (1922)
|||+++....++..+.+| ++++|+|+ +.+|+++ +.|++|++||++++....... ...+|. ...
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg---s~D~~i~lwd~~~~~~~~~~~------~~~~h~~~v~~ 155 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG---SSDGAISLLTYTGEGQWEVKK------INNAHTIGCNA 155 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE---CSSSCEEEEEECSSSCEEECC------BTTSSSSCBCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEE---cCCCCEEEEecCCCCCcceee------eeccccCCcce
Confidence 999987222345666654 78999997 7899999 889999999998764321111 112344 344
Q ss_pred EEEcCC-----------------CCeEeecc-----EEEEcCCC---cceeeeccCCCce-EEEEecCC----CEEEEEe
Q 000177 1650 IHFSPS-----------------DTMLLWNG-----ILWDRRNS---VPVHRFDQFTDHG-GGGFHPAG----NEVIINS 1699 (1922)
Q Consensus 1650 VaFSPd-----------------G~lLaSgg-----rLWDlrtg---k~I~kf~gh~~~V-sVaFSPdG----~~LASGS 1699 (1922)
++|+|+ +++|++++ ++||++.+ +++..+.+|...| +++|+|++ .+|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 899997 46888877 89999865 4678899999999 99999997 8899998
Q ss_pred -----EEEecCCC---e-EEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1700 -----EVWDLRKF---R-LLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1700 -----eIWDLrTg---k-lL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
+|||+.+. . ....+..|.. ++++|+|+|++|+++..+
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D 283 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD 283 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence 59999762 1 1223344544 899999999999998643
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-23 Score=241.66 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=213.6
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeec-------------cCCCCeeEEEee
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCT-------------SHQAPVTLVQSH 1560 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~-------------gHss~VtsLq~a 1560 (1922)
+...+....+++|. +.|++++|+| ++++|++|+.||.|+|||+.+++....+. +|...|+++ .
T Consensus 30 ~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 106 (408)
T 4a11_B 30 LELNKDRDVERIHG-GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV--Q 106 (408)
T ss_dssp EEECTTEEECCCCS-SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE--E
T ss_pred cccCcceeeeeccC-CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE--E
Confidence 33445567788999 9999999999 99999999999999999999887765553 699999999 8
Q ss_pred ecC-CCcEEEEe-cCCcEEEeccCCCCCCcceEecc---ceeEEEcCC---CCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1561 LSG-ETQLLLSS-SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNS---GNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1561 fSp-DG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPD---G~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
|+| ++.+|+++ .|+.|++||+.+ ++++..+.. ..++.|+|. +.+++++ +.|+.|++||+++++.+..
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNT--LQTADVFNFEETVYSHHMSPVSTKHCLVAVG---TRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEECSSCSSCCEEEEE---ESSSSEEEEESSSSCCCEE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCC--CccceeccCCCceeeeEeecCCCCCcEEEEE---cCCCeEEEEeCCCcceeee
Confidence 899 67777775 599999999987 666655543 377888884 4589998 7889999999999988887
Q ss_pred eccccccccCCCCcceEEEEcCCCCe-Eeecc-----EEEEcCCCc-ceeee---------------ccCCCce-EEEEe
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTM-LLWNG-----ILWDRRNSV-PVHRF---------------DQFTDHG-GGGFH 1689 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~l-LaSgg-----rLWDlrtgk-~I~kf---------------~gh~~~V-sVaFS 1689 (1922)
+. .+...+..++|+|++++ +++++ ++||++++. ++..+ ..|...+ +++|+
T Consensus 182 ~~-------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 182 LQ-------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp EC-------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred ec-------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 75 12334455999999985 66665 999999775 44444 4667777 99999
Q ss_pred cCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcc
Q 000177 1690 PAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFA 1756 (1922)
Q Consensus 1690 PdG~~LASGS-----eIWDLrTgklL~tl~gH~~--------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~s 1756 (1922)
|+|++|++++ .+||+++++.+..+.++.. ..+.+.+.+.+++++ ...
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 314 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP--------------------YGS 314 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE--------------------ETT
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe--------------------cCC
Confidence 9999999998 5999999877655443221 233333344444444 224
Q ss_pred eEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCCCC
Q 000177 1757 AFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRP 1815 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~r~ 1815 (1922)
.+++|+..+...+..+.. ...|..++|+|++.++++.. .++.+++|++.....
T Consensus 315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS------RDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE------TTSCEEEEEECC---
T ss_pred EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC------CCCeEEEEeCCCCCc
Confidence 577888888888888774 56799999999999988663 347899999866543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=237.93 Aligned_cols=266 Identities=14% Similarity=0.185 Sum_probs=210.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC-CCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA-GGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~-gk~ 1588 (1922)
+.|.+++|+|||++++++..++.+.+|............+|...|+++ .|+|++++|++++|+.|++||+.+.. ...
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAV--TISNPTRHVYTGGKGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEE--EECSSSSEEEEECBSEEEEEETTSTTCCSC
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEE--EEecCCcEEEEcCCCeEEEEECCCCCceee
Confidence 679999999999999999988888777665554445556899999999 88999999999889999999998621 112
Q ss_pred ceEec--c----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc--eeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1589 MHSFE--G----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ--LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1589 l~tf~--g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk--~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
+..+. + +.+++|+|++++|+++ +.|+.|++||+.+++ ....+. .+......++|+|++++++
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~~~d~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVG---GEASTLSIWDLAAPTPRIKAELT-------SSAPACYALAISPDSKVCF 157 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEE---ESSSEEEEEECCCC--EEEEEEE-------CSSSCEEEEEECTTSSEEE
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEE---cCCCcEEEEECCCCCcceeeecc-------cCCCceEEEEECCCCCEEE
Confidence 33332 2 4889999999999998 788999999999887 333343 1223345599999999999
Q ss_pred ecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCC
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGD 1728 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~ 1728 (1922)
+++ ++||+++++++..+..|...+ ++.|+|++++|++++ .+||+++++.+..+..... .+++|+|+|+
T Consensus 158 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~ 237 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE 237 (337)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS
T ss_pred EEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCC
Confidence 876 999999999999999999888 999999999999998 5999999999888764333 8999999999
Q ss_pred EEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1729 VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1729 ~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
+|+++..+ ..+++|+..+............|..++|+|++.++++.. .++.+++|
T Consensus 238 ~l~~~~~~-------------------~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~~ 292 (337)
T 1gxr_A 238 WLAVGMES-------------------SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG------KDNLLNAW 292 (337)
T ss_dssp EEEEEETT-------------------SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEE
T ss_pred EEEEEcCC-------------------CcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec------CCCcEEEE
Confidence 99998532 235566655555444444567799999999999988664 24689999
Q ss_pred EecC
Q 000177 1809 EIGR 1812 (1922)
Q Consensus 1809 EVGr 1812 (1922)
++..
T Consensus 293 ~~~~ 296 (337)
T 1gxr_A 293 RTPY 296 (337)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 8743
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=245.07 Aligned_cols=238 Identities=13% Similarity=0.132 Sum_probs=175.9
Q ss_pred cCCccccccceeeecCceeeEEe-cC-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CCceeeeccCCC
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTC-RD-DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-------SSPLESCTSHQA 1552 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtL-rg-H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-------gk~l~tL~gHss 1552 (1922)
++.++..+.+.+....+..+.++ .+ |. ..|++++|+|++++|++|+.|++|+|||+.. .+++.++.+|..
T Consensus 30 ~~~D~~i~lw~~~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~ 108 (330)
T 2hes_X 30 GSTDRKIKLVSVKYDDFTLIDVLDETAHK-KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN 108 (330)
T ss_dssp EESSSCEEEEECSSSCCEEEEEECTTCCC-SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----
T ss_pred EcCCCEEEEEEecCCCeEEEEEEecCCcc-CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC
Confidence 34444444444433345566667 45 99 9999999999999999999999999999853 345677899999
Q ss_pred CeeEEEeeecCCCcEEEEe-cCCcEEEeccCCC--CCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1553 PVTLVQSHLSGETQLLLSS-SSQDVHLWNASSI--AGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~--~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.|+++ +|+|++++|+++ .|++|+|||+... ..+++..+.+| ++++|+|++++|+++ +.|++|++||+.
T Consensus 109 ~V~~v--~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~---s~D~~i~iW~~~ 183 (330)
T 2hes_X 109 EVKGV--AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS---SYDDTVRIWKDY 183 (330)
T ss_dssp CEEEE--EECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE---ETTSCEEEEEEE
T ss_pred cEEEE--EECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE---cCCCeEEEEECC
Confidence 99999 899999999995 5999999999531 12345666665 789999999999999 889999999998
Q ss_pred CC--ceeeeeccccccccCCCCcc--eEEEEcCC--CCeEeecc-----EEEEcCCC--------cceeeecc-CCCce-
Q 000177 1626 TY--QLEAKLSDTSVNLTGRGHAY--SQIHFSPS--DTMLLWNG-----ILWDRRNS--------VPVHRFDQ-FTDHG- 1684 (1922)
Q Consensus 1626 Tg--k~i~tL~d~s~~~~~~gh~~--~vVaFSPd--G~lLaSgg-----rLWDlrtg--------k~I~kf~g-h~~~V- 1684 (1922)
++ +++.++. +|.. ..++|+|+ +.+|++++ ++||++.+ .++..+.+ |...+
T Consensus 184 ~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 254 (330)
T 2hes_X 184 DDDWECVAVLN---------GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY 254 (330)
T ss_dssp TTEEEEEEEEC---------CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEE
T ss_pred CCCeeEEEEcc---------CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceE
Confidence 76 5566664 4544 44999999 67888876 99999865 34555655 77778
Q ss_pred EEEEecCCCEEEEEe-----EEEecCCCe--EEEEE-cCCCc---eeEEEcc--CCCEEEEEEc
Q 000177 1685 GGGFHPAGNEVIINS-----EVWDLRKFR--LLRSV-PSLDQ---TTITFNA--RGDVIYAILR 1735 (1922)
Q Consensus 1685 sVaFSPdG~~LASGS-----eIWDLrTgk--lL~tl-~gH~~---~sVaFSP--dG~~LaSgs~ 1735 (1922)
+++|++++ +|++++ +|||..+++ .+... .+|.. ++++|+| ++++|++++.
T Consensus 255 ~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 255 NVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred EEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 99999776 677777 699998874 34333 45653 7999999 6889998853
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=267.87 Aligned_cols=219 Identities=18% Similarity=0.335 Sum_probs=186.4
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
...+.+.+|. ..|++++|+|+|++|++|+.||+|+|||+.+++....+.+|...|+++ +|+|++++|+++ .|++|+
T Consensus 421 ~~~~~~~~h~-~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 421 VAQRRLTGHS-HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV--AFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp EEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECTTSSCEEEEETTSCEE
T ss_pred cccceecCCC-CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE--EEeCCCCEEEEEeCCCEEE
Confidence 3456789999 999999999999999999999999999999999999999999999999 889999999885 699999
Q ss_pred EeccCCCCCCcceEe----cc----ceeEEEcCCC--CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-
Q 000177 1578 LWNASSIAGGPMHSF----EG----CKAARFSNSG--NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA- 1646 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf----~g----h~sVaFSPDG--~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~- 1646 (1922)
|||+.. .+...+ .+ +.+++|+|++ ..|+++ +.|++|++||++++++..++. +|.
T Consensus 498 iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~d~~v~vwd~~~~~~~~~~~---------~h~~ 562 (694)
T 3dm0_A 498 LWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA---SWDKTVKVWNLSNCKLRSTLA---------GHTG 562 (694)
T ss_dssp EECTTS---CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE---ETTSCEEEEETTTCCEEEEEC---------CCSS
T ss_pred EEECCC---CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE---eCCCeEEEEECCCCcEEEEEc---------CCCC
Confidence 999864 233332 22 3789999986 578998 889999999999998888775 454
Q ss_pred -ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCC
Q 000177 1647 -YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1647 -~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH 1716 (1922)
+..++|+|++++|++++ ++||+++++++..+..+....+++|+|++.+|++++ +|||+++++++..+..+
T Consensus 563 ~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccc
Confidence 44599999999999887 999999999988887654433999999999999887 69999999998877532
Q ss_pred C---------------------ceeEEEccCCCEEEEEEc
Q 000177 1717 D---------------------QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1717 ~---------------------~~sVaFSPdG~~LaSgs~ 1735 (1922)
. .++++|||+|++|++++.
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp CC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 1 157899999999999963
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-23 Score=265.45 Aligned_cols=230 Identities=17% Similarity=0.304 Sum_probs=199.4
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+.|.+...+.++++.+|. +.|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|+++ .|+|++++|++
T Consensus 38 ~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~ 114 (814)
T 3mkq_A 38 EIWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI--AVHPTKPYVLS 114 (814)
T ss_dssp EEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSSSEEEE
T ss_pred EEEECCCCceEEEEecCC-CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE--EEeCCCCEEEE
Confidence 344456788889999999 999999999999999999999999999999999999999999999999 89999999988
Q ss_pred e-cCCcEEEeccCCCCC-CcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1571 S-SSQDVHLWNASSIAG-GPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~g-k~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+ .|++|++||+.+ + .....+.+| .+++|+| +++.|+++ +.|++|++||+.++.....+. ..+
T Consensus 115 ~~~dg~i~vw~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~v~vwd~~~~~~~~~~~------~~~ 183 (814)
T 3mkq_A 115 GSDDLTVKLWNWEN--NWALEQTFEGHEHFVMCVAFNPKDPSTFASG---CLDRTVKVWSLGQSTPNFTLT------TGQ 183 (814)
T ss_dssp EETTSEEEEEEGGG--TSEEEEEEECCSSCEEEEEEETTEEEEEEEE---ETTSEEEEEETTCSSCSEEEE------CCC
T ss_pred EcCCCEEEEEECCC--CceEEEEEcCCCCcEEEEEEEcCCCCEEEEE---eCCCeEEEEECCCCcceeEEe------cCC
Confidence 5 599999999987 4 455666554 7899999 88899998 889999999999888777665 112
Q ss_pred CCcceEEEEcC--CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1644 GHAYSQIHFSP--SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1644 gh~~~vVaFSP--dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
......++|+| ++.++++++ ++||+++++++..+.+|...+ +++|+|+|.+|++++ ++||+.+++.+
T Consensus 184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 24456699999 999999877 899999999999999999888 999999999999998 59999999999
Q ss_pred EEEcCCCc--eeEEEccCCC--EEEEEE
Q 000177 1711 RSVPSLDQ--TTITFNARGD--VIYAIL 1734 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~--~LaSgs 1734 (1922)
.++..+.. ++++|+|+|. +++++.
T Consensus 264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 264 KTLNVGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp EEECCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred EEeecCCCcEEEEEEccCCCceEEEEEe
Confidence 99987755 8999999997 455553
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=244.32 Aligned_cols=265 Identities=10% Similarity=0.128 Sum_probs=214.1
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+.|.....+.+.++.+|. +.|++++|+|++ +|++|+.||+|++||+.+++++.++.+|...|+++.|.+++++.+|++
T Consensus 145 ~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 145 RVYDSINKKFLLQLSGHD-GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp EEEETTTTEEEEEECCCS-SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred EEEECCCCcEEEEEeCCC-cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence 344456788899999999 999999999988 999999999999999999999999999999999996655578888888
Q ss_pred e-cCCcEEEeccCCCCCCc-----------------------ceEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEEC
Q 000177 1571 S-SSQDVHLWNASSIAGGP-----------------------MHSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDI 1624 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~-----------------------l~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDl 1624 (1922)
+ .|++|++||+.+ ... +..+.+| ....+++++++++++ +.|+.|++||+
T Consensus 223 ~s~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~d~~i~vwd~ 297 (464)
T 3v7d_B 223 GSRDNTLHVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG---SYDNTLIVWDV 297 (464)
T ss_dssp EETTSCEEEEECCC--CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEE---ETTSCEEEEET
T ss_pred EcCCCcEEEeeCCC--CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEE---eCCCeEEEEEC
Confidence 5 599999999987 322 2334444 334567889999999 88999999999
Q ss_pred CCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEE
Q 000177 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1625 rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASG 1698 (1922)
++++++..+. .+......++|+|+++++++++ ++||+++++++.++.+|...+ ++.|+ +.+|+++
T Consensus 298 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 298 AQMKCLYILS-------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp TTTEEEEEEC-------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred CCCcEEEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 9999988875 1223344599999999999887 999999999999999999988 88887 5899998
Q ss_pred e-----EEEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee
Q 000177 1699 S-----EVWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI 1772 (1922)
Q Consensus 1699 S-----eIWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi 1772 (1922)
+ ++||++++.....+... ....++|+|++.+++++. +..+++|+..+.+.+...
T Consensus 369 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------dg~i~iwd~~~g~~~~~~ 428 (464)
T 3v7d_B 369 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--------------------ENQFNIYNLRSGKLVHAN 428 (464)
T ss_dssp ETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--------------------TTEEEEEETTTCCEEESC
T ss_pred eCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec--------------------CCeEEEEECCCCcEEehh
Confidence 8 59999998877666532 237889999999999984 134677887777777652
Q ss_pred --ccCCceEEEEEcCCCceEEEE
Q 000177 1773 --PVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1773 --dvkr~I~dLa~SPdds~LAVV 1793 (1922)
.....|.+++|+ +..+++.
T Consensus 429 ~~~~~~~v~~v~~~--~~~l~~~ 449 (464)
T 3v7d_B 429 ILKDADQIWSVNFK--GKTLVAA 449 (464)
T ss_dssp TTTTCSEEEEEEEE--TTEEEEE
T ss_pred hccCCCcEEEEEec--CCEEEEE
Confidence 335569999997 4445444
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-22 Score=272.20 Aligned_cols=308 Identities=17% Similarity=0.239 Sum_probs=230.9
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC--CCcE
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG--ETQL 1567 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp--DG~l 1567 (1922)
.+.|...+.+.+.++.+|. +.|++++|+|+|++|++|+.||+|+|||+.+++.+.++.+|...|+++ .|+| ++.+
T Consensus 639 i~vw~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~ 715 (1249)
T 3sfz_A 639 LQVFKAETGEKLLDIKAHE-DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC--HFTNKSNHLL 715 (1249)
T ss_dssp EEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSSSCCE
T ss_pred EEEEECCCCCEEEEeccCC-CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE--EEecCCCceE
Confidence 3444557788899999999 999999999999999999999999999999999999999999999999 7787 5567
Q ss_pred EEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc----
Q 000177 1568 LLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV---- 1638 (1922)
Q Consensus 1568 LaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~---- 1638 (1922)
++++ .|++|++||+.+ ++++.++.+| ++++|+|++++|+++ +.|++|++||+.+++....+.....
T Consensus 716 l~sg~~d~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~s~---s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 716 LATGSNDFFLKLWDLNQ--KECRNTMFGHTNSVNHCRFSPDDELLASC---SADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp EEEEETTSCEEEEETTS--SSEEEEECCCSSCEEEEEECSSTTEEEEE---ESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred EEEEeCCCeEEEEECCC--cchhheecCCCCCEEEEEEecCCCEEEEE---ECCCeEEEEeCCCCcccceeccccccccc
Confidence 7774 699999999998 7888888775 789999999999999 8899999999998877665431100
Q ss_pred --------------------------------------------cccCCCCcceEEEEcCCCCeEeecc-----EEEEcC
Q 000177 1639 --------------------------------------------NLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRR 1669 (1922)
Q Consensus 1639 --------------------------------------------~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlr 1669 (1922)
....+......++|+|+++++++++ ++||+.
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 0001223344589999999999877 899999
Q ss_pred CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe-----------------------------------
Q 000177 1670 NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR----------------------------------- 1708 (1922)
Q Consensus 1670 tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk----------------------------------- 1708 (1922)
+++.+..+.+|...+ +++|+|+|++|++++ ++||+.+..
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 999999999999998 999999999999998 599975310
Q ss_pred ----EEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhh----------ccccc-------------ccCCcceEEEE
Q 000177 1709 ----LLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAV----------HTRRV-------------KHPLFAAFRTV 1761 (1922)
Q Consensus 1709 ----lL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~l----------h~rr~-------------ksp~~ssFrt~ 1761 (1922)
.+.........+++|+|+|++++++..+....++... |...+ ....+..+++|
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 0001111223688999999999988654332222110 00000 00123456677
Q ss_pred ecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1762 DAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1762 Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+..+...+........|..++|+|++.+++.. .++.+++|++..
T Consensus 1031 d~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-------~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1031 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS-------FDGTVKVWNVIT 1074 (1249)
T ss_dssp ETTTTEEECCBCCSSCEEEEEECSSSEEEEEE-------SSSEEEEEETTT
T ss_pred ECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-------CCCcEEEEECCC
Confidence 76666555555556779999999977654432 346799998754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-24 Score=250.87 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=204.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
.+++++|+|+|++|++|+.||.|++||+.+++....+.+| .+..+. .|++++++|+++ .|+.|++||+.+ ++++
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~ 132 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVD-TAKLQMRRFILGTTEGDIKVLDSNF--NLQR 132 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEE-EECSSSCEEEEEETTSCEEEECTTS--CEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEE-EEecCCCEEEEEECCCCEEEEeCCC--ccee
Confidence 3558999999999999999999999999988887777777 444443 689999999985 599999999987 6666
Q ss_pred eEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1590 HSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1590 ~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
..+.+| ++++|+|++++|+++ +.|++|++||+.+++.+..+. .+...+..++|+|++++|++++
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~---s~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~d 202 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISS---SQDMQLKIWSVKDGSNPRTLI-------GHRATVTDIAIIDRGRNVLSASLD 202 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTCCCCEEEE-------CCSSCEEEEEEETTTTEEEEEETT
T ss_pred eecccccCccEEEEECCCCCEEEEE---eCCCeEEEEeCCCCcCceEEc-------CCCCcEEEEEEcCCCCEEEEEcCC
Confidence 766654 889999999999999 889999999999999888875 1223344599999999999877
Q ss_pred ---EEEEcCCCcceeeeccCC---Cce----------------------EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1664 ---ILWDRRNSVPVHRFDQFT---DHG----------------------GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh~---~~V----------------------sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
++||+++++++..+..+. ..+ +++|+|+|++|++++ ++||+++++.+
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 899999999999887542 222 345689999999998 59999999988
Q ss_pred EEEcC-CCc--eeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc-eeeeecc--CCceEEEEE
Q 000177 1711 RSVPS-LDQ--TTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS-DIATIPV--DRCVLDFAT 1783 (1922)
Q Consensus 1711 ~tl~g-H~~--~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys-~IaTidv--kr~I~dLa~ 1783 (1922)
..+.. |.. ++++|+|+|. +|+++.. +..+++||..+.. .+..+.. ...|..+.+
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~-------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 343 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYE-------------------NGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEET-------------------TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeC-------------------CCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence 88764 443 8999999999 8888853 2346677766543 3455543 445777755
Q ss_pred cCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1784 ERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1784 SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+++.++++. ..++.+++|++..
T Consensus 344 -~~~~~l~s~------~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 344 -AAGALFVSS------GFDTSIKLDIISD 365 (420)
T ss_dssp -ETTEEEEEE------TTTEEEEEEEECC
T ss_pred -CCCCEEEEe------cCCccEEEEeccC
Confidence 567777654 2457899999865
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-23 Score=234.78 Aligned_cols=266 Identities=11% Similarity=0.141 Sum_probs=204.0
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CCce-eeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGD---SSHIAVGSHTKELKIFDSNS-SSPL-ESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPD---G~lLASGS~DGtIkIWDl~t-gk~l-~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
...+++++.+.+|. +.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|+++ .|+|++++|+
T Consensus 26 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~ 102 (368)
T 3mmy_A 26 HNPMKDIEVTSSPD-DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDV--CWSDDGSKVF 102 (368)
T ss_dssp SCTTCCEECSSCCS-SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEE--EECTTSSEEE
T ss_pred CCCcceeEeccCCC-CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEE--EECcCCCEEE
Confidence 34567788899999 99999999999 69999999999999999987 5555 6789999999999 8899999999
Q ss_pred Ee-cCCcEEEeccCCCCCCcceEec---cceeEEE--cCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1570 SS-SSQDVHLWNASSIAGGPMHSFE---GCKAARF--SNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1570 SS-sDgtVkLWDl~t~~gk~l~tf~---gh~sVaF--SPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
++ .|++|++||+.+ ++++.... .+++++| +|++++|+++ +.|+.|++||+++++.+..+.
T Consensus 103 s~~~dg~v~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~--------- 168 (368)
T 3mmy_A 103 TASCDKTAKMWDLSS--NQAIQIAQHDAPVKTIHWIKAPNYSCVMTG---SWDKTLKFWDTRSSNPMMVLQ--------- 168 (368)
T ss_dssp EEETTSEEEEEETTT--TEEEEEEECSSCEEEEEEEECSSCEEEEEE---ETTSEEEEECSSCSSCSEEEE---------
T ss_pred EEcCCCcEEEEEcCC--CCceeeccccCceEEEEEEeCCCCCEEEEc---cCCCcEEEEECCCCcEEEEEe---------
Confidence 85 599999999987 55544332 2488999 8899999999 889999999999999888876
Q ss_pred CCcceEEEEcCCCCeEeecc-----EEEEcCCCccee-eecc-CCCce-EEEEecCCCE----EEEEe-----EEEecCC
Q 000177 1644 GHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVH-RFDQ-FTDHG-GGGFHPAGNE----VIINS-----EVWDLRK 1706 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~-kf~g-h~~~V-sVaFSPdG~~----LASGS-----eIWDLrT 1706 (1922)
.+. .+.++.+....+++++ .+||++...... .+.. +.... ++.+.+++.. +++++ ++||+++
T Consensus 169 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 169 LPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp CSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred cCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 222 3333333344444333 999998765332 2222 22223 5666655544 88887 5999998
Q ss_pred C---eEEEEEcCCC--------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee
Q 000177 1707 F---RLLRSVPSLD--------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI 1769 (1922)
Q Consensus 1707 g---klL~tl~gH~--------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I 1769 (1922)
. ..+..+.+|. .++++|+|+|++|+++.. +..+++||..+...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-------------------dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-------------------DGRFSFWDKDARTKL 308 (368)
T ss_dssp SCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-------------------TSCEEEEETTTTEEE
T ss_pred CCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-------------------CCeEEEEECCCCcEE
Confidence 7 5667777764 479999999999999852 345778888888877
Q ss_pred eeecc-CCceEEEEEcCCCceEEEEecCC
Q 000177 1770 ATIPV-DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1770 aTidv-kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
.++.. ...|.+++|+|++.++++...++
T Consensus 309 ~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 309 KTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred EEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 77765 56799999999999999886544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-23 Score=235.45 Aligned_cols=256 Identities=11% Similarity=0.057 Sum_probs=205.0
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceeeeccCCCCeeEEEeeecCCCc-EEEEe-cCCc
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---PLESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQD 1575 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---~l~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgt 1575 (1922)
+....+|. +.|++++|+|++++|++|+.||.|+||++.+++ ....+.+|...|+++ .|+|+++ +|+++ .|+.
T Consensus 4 ~~~~~~h~-~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 4 VQIEQAPK-DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC--NFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EECSSCCS-SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEE--EEEESSSEEEEEEETTSC
T ss_pred eecccCCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEE--EECCCCCcEEEEEcCCCe
Confidence 34456899 999999999999999999999999999998877 345567899999999 8899999 88875 5999
Q ss_pred EEEecc-CCCCCCcceEecc--c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC---------Cceeeeecccccc
Q 000177 1576 VHLWNA-SSIAGGPMHSFEG--C----KAARFSNSGNLFAALPTETSDRGILLYDIQT---------YQLEAKLSDTSVN 1639 (1922)
Q Consensus 1576 VkLWDl-~t~~gk~l~tf~g--h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT---------gk~i~tL~d~s~~ 1639 (1922)
|++||+ .+ +. ...+.+ | ++++|+| +++|+++ +.|+.|++||+++ ++++.++.
T Consensus 81 i~~wd~~~~--~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----- 148 (342)
T 1yfq_A 81 ILKVDLIGS--PS-FQALTNNEANLGICRICKYG-DDKLIAA---SWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----- 148 (342)
T ss_dssp EEEECSSSS--SS-EEECBSCCCCSCEEEEEEET-TTEEEEE---ETTSEEEEECHHHHTTBCEEEEESCSSSSS-----
T ss_pred EEEEEeccC--Cc-eEeccccCCCCceEEEEeCC-CCEEEEE---cCCCeEEEEcccccccccccccCCeeeEEe-----
Confidence 999999 76 33 355555 4 7899999 9999999 8899999999997 66655543
Q ss_pred ccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC-Ccc--eeeeccCCCce-EEEEec-CCCEEEEEe-----EEEec
Q 000177 1640 LTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN-SVP--VHRFDQFTDHG-GGGFHP-AGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt-gk~--I~kf~gh~~~V-sVaFSP-dG~~LASGS-----eIWDL 1704 (1922)
+......++|+|++ +++++ ++||+++ +.. ......+...+ ++.|+| +++++++++ ++|++
T Consensus 149 ---~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 149 ---VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp ---SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred ---eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 33445569999988 55444 9999998 653 23344566667 999999 999999998 59999
Q ss_pred CCC------eEEEEEcCC-----------CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1705 RKF------RLLRSVPSL-----------DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1705 rTg------klL~tl~gH-----------~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
+.. +.+..+..| ..++++|+|+|++|+++.. +..+++||..+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------------------dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-------------------DGIISCWNLQTRK 284 (342)
T ss_dssp CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-------------------TSCEEEEETTTTE
T ss_pred cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-------------------CceEEEEcCccHh
Confidence 887 778888877 3479999999999999852 2357788888888
Q ss_pred eeeeecc--CCceEEEEEcCCCceEEEEecCC
Q 000177 1768 DIATIPV--DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1768 ~IaTidv--kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
.+.++.. ...|..++ |++.++++...+.
T Consensus 285 ~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 285 KIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred HhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 8877765 45688988 9999998876444
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-23 Score=234.96 Aligned_cols=215 Identities=16% Similarity=0.304 Sum_probs=180.3
Q ss_pred CCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCC-ceeeeccCCCCeeEEEe----eecCCCcEEEEe-cCCcE
Q 000177 1506 DDAGALLTCITFLGD---SSHIAVGSHTKELKIFDSNSSS-PLESCTSHQAPVTLVQS----HLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPD---G~lLASGS~DGtIkIWDl~tgk-~l~tL~gHss~VtsLq~----afSpDG~lLaSS-sDgtV 1576 (1922)
+|. ..|++++|+|+ |++|++|+.||.|++||+.+++ .+..+.+|...|+++.| +|+|++++|+++ .|++|
T Consensus 63 ~~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 63 EKA-KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EES-SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ccc-CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 688 89999999998 7999999999999999999988 88999999999999976 468899999985 59999
Q ss_pred EEeccCCCCCC-cceEecc--------ceeEE----EcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1577 HLWNASSIAGG-PMHSFEG--------CKAAR----FSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1577 kLWDl~t~~gk-~l~tf~g--------h~sVa----FSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
++||+.+ +. ++..+.. ++++. |+|++++|+++ +.|+.|++||+++++...... +
T Consensus 142 ~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~--------~ 208 (357)
T 3i2n_A 142 KVWDPRQ--KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG---YDNGDIKLFDLRNMALRWETN--------I 208 (357)
T ss_dssp EEECTTS--CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE---ETTSEEEEEETTTTEEEEEEE--------C
T ss_pred EEEeCCC--CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE---ccCCeEEEEECccCceeeecC--------C
Confidence 9999987 44 5666643 35566 78999999999 888999999999988765543 3
Q ss_pred CCcceEEEEcC---CCCeEeecc-----EEEEcCCCcceeeec-----cCCCce-EEEEecCCC-EEEEEe-----EEEe
Q 000177 1644 GHAYSQIHFSP---SDTMLLWNG-----ILWDRRNSVPVHRFD-----QFTDHG-GGGFHPAGN-EVIINS-----EVWD 1703 (1922)
Q Consensus 1644 gh~~~vVaFSP---dG~lLaSgg-----rLWDlrtgk~I~kf~-----gh~~~V-sVaFSPdG~-~LASGS-----eIWD 1703 (1922)
......++|+| ++.++++++ ++||+++++++..+. +|...+ ++.|+|++. +|++++ ++||
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 34556699999 899999877 899999988776665 888888 999999998 788888 5999
Q ss_pred cCCC-------------------eEEEEEcCCCc--eeEEEccCCCEEE-EEE
Q 000177 1704 LRKF-------------------RLLRSVPSLDQ--TTITFNARGDVIY-AIL 1734 (1922)
Q Consensus 1704 LrTg-------------------klL~tl~gH~~--~sVaFSPdG~~La-Sgs 1734 (1922)
++++ +++.++.+|.. ++++|+|+|++|+ ++.
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence 9853 56778888876 8999999999998 564
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=240.69 Aligned_cols=226 Identities=14% Similarity=0.227 Sum_probs=180.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceeeeccCCCCeeEEEeeecCC--CcEEEEe-cC
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN--SSSPLESCTSHQAPVTLVQSHLSGE--TQLLLSS-SS 1573 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~--tgk~l~tL~gHss~VtsLq~afSpD--G~lLaSS-sD 1573 (1922)
+++.++++|. +.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|+++ .|+++ +++|+++ .|
T Consensus 2 ~~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 2 SMVVIANAHN-ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYD 78 (379)
T ss_dssp ---CCEEECC-CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE--EECCGGGCSEEEEEETT
T ss_pred CccEEecCCc-ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEE--EeCCCCCCCEEEEeccC
Confidence 3566788999 999999999999999999999999999997 556778889999999999 77766 8888885 59
Q ss_pred CcEEEeccCCCCCC--cceEecc----ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1574 QDVHLWNASSIAGG--PMHSFEG----CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk--~l~tf~g----h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
++|++||+.+ ++ .+..+.. +++++|+|+ +++|+++ +.|+.|++||++++.....+. ...+..
T Consensus 79 g~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~d~~i~v~d~~~~~~~~~~~-----~~~~~~ 148 (379)
T 3jrp_A 79 GKVLIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA---SSDGKVSVVEFKENGTTSPII-----IDAHAI 148 (379)
T ss_dssp SCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEECCTTSCCCEEE-----EECCTT
T ss_pred CEEEEEEcCC--CceeEeeeecCCCcceEEEEeCCCCCCCEEEEe---cCCCcEEEEecCCCCceeeEE-----ecCCCC
Confidence 9999999987 54 5556654 388999999 9999999 889999999999875433221 011233
Q ss_pred cceEEEEcC-------------CCCeEeecc-----EEEEcCCCc----ceeeeccCCCce-EEEEecC---CCEEEEEe
Q 000177 1646 AYSQIHFSP-------------SDTMLLWNG-----ILWDRRNSV----PVHRFDQFTDHG-GGGFHPA---GNEVIINS 1699 (1922)
Q Consensus 1646 ~~~vVaFSP-------------dG~lLaSgg-----rLWDlrtgk----~I~kf~gh~~~V-sVaFSPd---G~~LASGS 1699 (1922)
....++|+| ++.++++++ ++||+++++ ++..+.+|...+ +++|+|+ +.+|++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 455599999 689999877 999999875 456778898888 9999999 89999998
Q ss_pred -----EEEecCCCe---EEEEEc--CCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 -----EVWDLRKFR---LLRSVP--SLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 -----eIWDLrTgk---lL~tl~--gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+|||++++. ....+. .|.. ++++|+|+|++|+++..+.
T Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 599999864 222222 2433 7999999999999986543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-24 Score=266.36 Aligned_cols=270 Identities=10% Similarity=0.056 Sum_probs=194.7
Q ss_pred EEecCCCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCCc-----------eeeeccCCCCeeEEEeeecCC
Q 000177 1502 RTCRDDAGALLTCITFLGD------SSHIAVGSHTKELKIFDSNSSSP-----------LESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPD------G~lLASGS~DGtIkIWDl~tgk~-----------l~tL~gHss~VtsLq~afSpD 1564 (1922)
.++.+|. +.|++++|+|+ +.+||+|+.||+|+|||+.++.. ..++.+|...|+++ +|+++
T Consensus 201 ~~l~~~~-~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv--~~s~~ 277 (524)
T 2j04_B 201 QTIVHSF-GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTF--DFLSP 277 (524)
T ss_dssp EEEEECC-CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEE--EESSS
T ss_pred EEEEecC-CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEE--EecCC
Confidence 4567788 89999999996 57999999999999999987642 24778999999999 77877
Q ss_pred CcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeE--EEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1565 TQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAA--RFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1565 G~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sV--aFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
+ .|++ +.|++|++||+++. ..+...+.+| +++ .|+|++ ++|+++ +.|++|+|||++++++..++...
T Consensus 278 ~-~lasgs~DgtV~lWD~~~~-~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~---S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 278 T-TVVCGFKNGFVAEFDLTDP-EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV---AVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp S-EEEEEETTSEEEEEETTBC-SSCSEEEECSSSCEEEEEEECCTTSCCEEEEE---ETTSEEEEECGGGHHHHCEEEEE
T ss_pred C-eEEEEeCCCEEEEEECCCC-CCceEEeecccccEEEEEEEcCCCCCeEEEEe---ccCCeEEEEECCCCCcccccccc
Confidence 6 5555 56999999999862 2445566665 677 578888 899999 89999999999998877666410
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecC
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
. ....+..++|+|+++.+++++ ++||++++.+++++.+|...| +++|+|+|++|++|+ +|||+.
T Consensus 353 ~-----~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 353 F-----RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp C-----SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred c-----ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 0 011234599999999988776 999999999999999999999 999999999999999 599986
Q ss_pred CCeEEEEEcC----CC---ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec-cCCc
Q 000177 1706 KFRLLRSVPS----LD---QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP-VDRC 1777 (1922)
Q Consensus 1706 TgklL~tl~g----H~---~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid-vkr~ 1777 (1922)
.. ++..... +. .++++|+|+|..+. .+. . ..++. +. .+...+.++. ....
T Consensus 428 ~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~-~-~~~~~-----------------~~-~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 428 RR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS-S-YEVYP-----------------LT-VNDVSKAKIDAHGIN 485 (524)
T ss_dssp SS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC-C-CCCCC-------------------------------CCCS
T ss_pred Hh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC-C-ceecc-----------------cc-cCCcceeeecCCCce
Confidence 53 2222111 11 25889999998553 211 1 00100 00 0011112222 2457
Q ss_pred eEEEEEcCCCc---eEEEEecCCCCCccceEEEEEecC
Q 000177 1778 VLDFATERTDS---FVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1778 I~dLa~SPdds---~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|..++|+|++. .+|.. ..++.||||.+..
T Consensus 486 V~~Vafsp~~~~~~~lAsg------~~~g~vrlw~l~~ 517 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFS------NSAGLLTLEYLSL 517 (524)
T ss_dssp CCCEEECCSTTTTTEEEEE------CTTSEEEEEECSC
T ss_pred EEEEECCCCCCccHHHHhh------ccCceEEEEEccc
Confidence 99999999964 66643 3458999999754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=244.65 Aligned_cols=270 Identities=12% Similarity=0.214 Sum_probs=211.9
Q ss_pred CCEEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCC---ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1510 ALLTCITFLGDSS-HIAVG----------SHTKELKIFDSNSSS---PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~-lLASG----------S~DGtIkIWDl~tgk---~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..|++++|+|+|+ +|++| +.|+.|+|||+.++. .+..+ .|...|+++ .|+|++++|+++ .|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~--~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDL--DWSHNNKIIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEE--EECSSSSCEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEE--EECCCCCeEEEEccCC
Confidence 4688999999997 99999 899999999998876 33333 589999999 889999999985 699
Q ss_pred cEEEeccCCC--CCCcceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCc------eeeeecccccccc
Q 000177 1575 DVHLWNASSI--AGGPMHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQ------LEAKLSDTSVNLT 1641 (1922)
Q Consensus 1575 tVkLWDl~t~--~gk~l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk------~i~tL~d~s~~~~ 1641 (1922)
.|++||+... ..+++..+.+| ++++|+|+ +++|+++ +.|++|++||+.+++ ....+. ...
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~ 162 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG---GNNGEIFIWDMNKCTESPSNYTPLTPG----QSM 162 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEE---CSSSCEEBCBTTTTSSCTTTCCCBCCC----CSC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEE---cCCCeEEEEECCCCccccccccccccc----ccc
Confidence 9999999761 12356666654 78999998 8999998 889999999999876 322221 011
Q ss_pred CCCCcceEEEEcCC-CCeEeecc-----EEEEcCCCcceeeeccC------CCce-EEEEecCC-CEEEEEe--------
Q 000177 1642 GRGHAYSQIHFSPS-DTMLLWNG-----ILWDRRNSVPVHRFDQF------TDHG-GGGFHPAG-NEVIINS-------- 1699 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPd-G~lLaSgg-----rLWDlrtgk~I~kf~gh------~~~V-sVaFSPdG-~~LASGS-------- 1699 (1922)
.+......++|+|+ +.++++++ ++||+++++++..+..+ ...+ +++|+|++ .+|++++
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 13334556999999 67888766 99999999999988876 5666 99999997 5888876
Q ss_pred EEEecCCC-eEEEEEc-CCCc--eeEEEcc-CCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1700 EVWDLRKF-RLLRSVP-SLDQ--TTITFNA-RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1700 eIWDLrTg-klL~tl~-gH~~--~sVaFSP-dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
++||++++ +++..+. +|.. ++++|+| ++.+|+++.. +..+++|+..+.+.+.++..
T Consensus 243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-------------------dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-------------------DNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-------------------SSEEEEECSSSCCEEEEEEC
T ss_pred EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-------------------CCCEEEeeCCCCccceeecC
Confidence 39999986 6777777 7766 8999999 8999999853 34567788777777777765
Q ss_pred -CCceEEEEEcCCC-ceEEEEecCCCCCccceEEEEEecCCC
Q 000177 1775 -DRCVLDFATERTD-SFVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1775 -kr~I~dLa~SPdd-s~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
...|.+++|+|++ .++++. ..++.+++|++....
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~------~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACA------SFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEEC------CSSSEEEEEESCCCC
T ss_pred CCCceEEEEECCCCCCEEEEE------ecCCcEEEEEccCCC
Confidence 5569999999998 666643 345789999986544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=230.49 Aligned_cols=231 Identities=15% Similarity=0.177 Sum_probs=193.4
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
.|.....+.+.++.+|. +.|++++|+|++++|++|+.||+|++||+.+++.+..+. |...|.++ .|+|++++|+++
T Consensus 58 vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~--~~~~~~~~l~~~ 133 (369)
T 3zwl_B 58 VWYSLNGERLGTLDGHT-GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRV--EFSPCGNYFLAI 133 (369)
T ss_dssp EEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEE--EECTTSSEEEEE
T ss_pred EEeCCCchhhhhhhhcC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEE--EEccCCCEEEEe
Confidence 34456778889999999 999999999999999999999999999999999998888 88999999 889999999985
Q ss_pred -cC-----CcEEEeccCCCCC---------CcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cce
Q 000177 1572 -SS-----QDVHLWNASSIAG---------GPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQL 1629 (1922)
Q Consensus 1572 -sD-----gtVkLWDl~t~~g---------k~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~ 1629 (1922)
.+ +.|++||+..... ..+..+. .+.+++|+|++++|+++ +.|+.|++||+++ ++.
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~ 210 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG---HKDGKISKYDVSNNYEY 210 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE---ETTSEEEEEETTTTTEE
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE---cCCCEEEEEECCCCcEe
Confidence 46 8999999986211 1222222 34789999999999998 8899999999998 677
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----- 1699 (1922)
+..+. .+...+..++|+|++++|++++ ++||+++++.+..+.......++.|+|+++++++++
T Consensus 211 ~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (369)
T 3zwl_B 211 VDSID-------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAK 283 (369)
T ss_dssp EEEEE-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC--
T ss_pred EEEEe-------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCc
Confidence 77665 1233445599999999999876 899999999999888443333999999999999976
Q ss_pred --------------EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1700 --------------EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1700 --------------eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
.+||+.+++.+..+.+|.. ++++|+|+|++|+++..+
T Consensus 284 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 284 DVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -----------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 3899999999999998876 799999999999998543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-22 Score=240.45 Aligned_cols=267 Identities=12% Similarity=0.148 Sum_probs=208.3
Q ss_pred ecCCCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1504 CRDDAGAL--LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1504 LrgH~d~~--Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
..+|. .. +.++.|++ ..+++++.||.|+|||+.+++....+.. |...|+++ +|+|++++|+++ .|+.|++|
T Consensus 87 ~~~~~-~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v--~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 87 APGII-DDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASV--KWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp CTTCC-CCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEE--EECTTSSEEEEEETTSCEEEE
T ss_pred CCCCc-CCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEE--EECCCCCEEEEECCCCeEEEE
Confidence 34665 44 45566664 5688999999999999999998887755 89999999 889999999985 59999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
|+.+ ++.+..+.+| .++.| ++++|+++ +.|+.|++||+++ +..+..+. .+...+..++|+|
T Consensus 162 d~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~ 227 (401)
T 4aez_A 162 DVES--QTKLRTMAGHQARVGCLSW--NRHVLSSG---SRSGAIHHHDVRIANHQIGTLQ-------GHSSEVCGLAWRS 227 (401)
T ss_dssp ETTT--CCEEEEECCCSSCEEEEEE--ETTEEEEE---ETTSEEEEEETTSSSCEEEEEE-------CCSSCEEEEEECT
T ss_pred ECcC--CeEEEEecCCCCceEEEEE--CCCEEEEE---cCCCCEEEEecccCcceeeEEc-------CCCCCeeEEEEcC
Confidence 9988 7788888765 67888 56799998 8899999999994 55555554 1233445599999
Q ss_pred CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCC-EEEEEe-------EEEecCCCeEEEEEcCCCc-e
Q 000177 1655 SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGN-EVIINS-------EVWDLRKFRLLRSVPSLDQ-T 1719 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~-~LASGS-------eIWDLrTgklL~tl~gH~~-~ 1719 (1922)
++++|++++ ++||+++++++..+..|...+ +++|+|++. .+++++ .+||+++++++..+..+.. +
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~ 307 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEE
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 999999887 999999999999999999888 999999774 566653 4999999999999975544 8
Q ss_pred eEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeee--e-ccCCceEEEEEcCCCceEEEEecC
Q 000177 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIAT--I-PVDRCVLDFATERTDSFVGLITMD 1796 (1922)
Q Consensus 1720 sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaT--i-dvkr~I~dLa~SPdds~LAVVe~d 1796 (1922)
+++|+|+|.+++++... .+..+++|+..+...... + .....|..++|+|++.++++..
T Consensus 308 ~~~~s~~~~~l~~~~g~-----------------~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~-- 368 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGF-----------------PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA-- 368 (401)
T ss_dssp EEEECSSSSEEEEEECT-----------------TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC--
T ss_pred EEEECCCCCeEEEEeec-----------------CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe--
Confidence 99999999999986321 123455666554333222 2 2355799999999999988763
Q ss_pred CCCCccceEEEEEecC
Q 000177 1797 DQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1797 ds~d~dSsVRLyEVGr 1812 (1922)
.++.+++|++..
T Consensus 369 ----~dg~i~iw~~~~ 380 (401)
T 4aez_A 369 ----SDENLKFWRVYD 380 (401)
T ss_dssp ----TTSEEEEEECCC
T ss_pred ----CCCcEEEEECCC
Confidence 347899998754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-22 Score=237.02 Aligned_cols=264 Identities=14% Similarity=0.199 Sum_probs=212.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~g 1586 (1922)
-.+++|+||++ ++|++|. |++|+|||+.++++...+ .+|...|++| +|+|+|++|++| .|++|+|||+.+ +
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv--~fspdg~~lasgs~Dg~v~iWd~~~--~ 179 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSV--AWIKEGNYLAVGTSSAEVQLWDVQQ--Q 179 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEE--EECTTSSEEEEEETTSCEEEEETTT--T
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEE--EECCCCCEEEEEECCCeEEEEEcCC--C
Confidence 45678999975 5788776 999999999999988766 5678899999 889999999995 599999999998 8
Q ss_pred CcceEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1587 GPMHSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1587 k~l~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
+++..+.+| ...++++++.++++| +.|+.+++||...... +.++. ++......+.|+|+++++++++
T Consensus 180 ~~~~~~~~h~~~v~~~s~~~~~l~sg---s~d~~i~~~d~~~~~~~~~~~~-------~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWNSYILSSG---SRSGHIHHHDVRVAEHHVATLS-------GHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp EEEEEECCCSSCEEEEEEETTEEEEE---ETTSEEEEEETTSSSCEEEEEE-------CCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEeCCCCceEEEeeCCCEEEEE---eCCCceeEeeecccceeeEEec-------ccccceeeeeecCCCCeeeeee
Confidence 888888887 334556678899998 8899999999987543 34443 1233444599999999999877
Q ss_pred -----EEEEcCCCc----ceeeeccCCCce-EEEEecCCC-EEEEEe-------EEEecCCCeEEEEEcCCCc-eeEEEc
Q 000177 1664 -----ILWDRRNSV----PVHRFDQFTDHG-GGGFHPAGN-EVIINS-------EVWDLRKFRLLRSVPSLDQ-TTITFN 1724 (1922)
Q Consensus 1664 -----rLWDlrtgk----~I~kf~gh~~~V-sVaFSPdG~-~LASGS-------eIWDLrTgklL~tl~gH~~-~sVaFS 1724 (1922)
++||..+++ .+..+..|...+ +++|+|++. .+++++ +|||+.+++++..+..+.. +++.|+
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~ 329 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 329 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEE
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeec
Confidence 899999875 456677888888 999999765 555543 5999999999999987766 899999
Q ss_pred cCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccc
Q 000177 1725 ARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFS 1803 (1922)
Q Consensus 1725 PdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dS 1803 (1922)
|++..++++... .+..+++|+..+...+.++.. ...|.+++|+|++.+|+... .|.
T Consensus 330 ~~~~~lv~~sg~-----------------~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s------~D~ 386 (420)
T 4gga_A 330 PHYKELISGHGF-----------------AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA------ADE 386 (420)
T ss_dssp TTTTEEEEEECT-----------------TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE------TTT
T ss_pred CCCCeEEEEEec-----------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe------cCC
Confidence 999999987421 124578888888888888875 45699999999999998653 457
Q ss_pred eEEEEEecC
Q 000177 1804 SARIYEIGR 1812 (1922)
Q Consensus 1804 sVRLyEVGr 1812 (1922)
.||+|++-.
T Consensus 387 tvriWdv~~ 395 (420)
T 4gga_A 387 TLRLWRCFE 395 (420)
T ss_dssp EEEEECCSC
T ss_pred eEEEEECCC
Confidence 899998743
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=242.98 Aligned_cols=231 Identities=14% Similarity=0.215 Sum_probs=186.8
Q ss_pred eeecCceeeEEec--CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1493 FVYSRFRPWRTCR--DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1493 fi~srfrpirtLr--gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
|...+++.++.+. +|. ..|+||+|+|+|++|++|+.||+|+|||+.+++++.++.+|...|.++ .+ ++.+|++
T Consensus 130 Wd~~tg~~~~~~~~~~~~-~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~--s~--~~~~l~s 204 (420)
T 4gga_A 130 WSASSGDILQLLQMEQPG-EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SW--NSYILSS 204 (420)
T ss_dssp EETTTCCEEEEEECCSTT-CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EE--ETTEEEE
T ss_pred EECCCCCEEEEEEecCCC-CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEE--ee--CCCEEEE
Confidence 3345566566554 677 889999999999999999999999999999999999999999999999 55 5678888
Q ss_pred e-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 S-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+ .|+.+++||.... ...+.++.+| ..+.|+|++++++++ +.|+.+++||..+++...... .....+..
T Consensus 205 gs~d~~i~~~d~~~~-~~~~~~~~~h~~~~~~~~~~~~g~~l~s~---~~D~~v~i~~~~~~~~~~~~~---~~~~~~~~ 277 (420)
T 4gga_A 205 GSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASG---GNDNLVNVWPSAPGEGGWVPL---QTFTQHQG 277 (420)
T ss_dssp EETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEESSCCSSCSCCS---EEECCCSS
T ss_pred EeCCCceeEeeeccc-ceeeEEecccccceeeeeecCCCCeeeee---eccccceEEeeccccccceee---eeecccCC
Confidence 5 5999999999862 3445666665 678999999999999 889999999999876432110 00011223
Q ss_pred cceEEEEcCCCCeEe-ec--c-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-------EEEecCCCeEE
Q 000177 1646 AYSQIHFSPSDTMLL-WN--G-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-------EVWDLRKFRLL 1710 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLa-Sg--g-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-------eIWDLrTgklL 1710 (1922)
.+..++|+|.+..++ ++ + ++||+.+++++..+..+...+++.|+|+++++++++ .|||+.+++++
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 345599999876444 32 2 899999999999998887777999999999998875 59999999999
Q ss_pred EEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1711 RSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.++.+|.. ++++|+|+|++|++++.
T Consensus 358 ~~l~gH~~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 358 AELKGHTSRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999987 89999999999999863
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=236.74 Aligned_cols=226 Identities=12% Similarity=0.227 Sum_probs=188.2
Q ss_pred ceeeEEecCCCCCCEEEEEEcCC----C---CEEEEEeCCCcEEEEECCCCCc-----eeeeccC-----CCCeeEEEee
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGD----S---SHIAVGSHTKELKIFDSNSSSP-----LESCTSH-----QAPVTLVQSH 1560 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPD----G---~lLASGS~DGtIkIWDl~tgk~-----l~tL~gH-----ss~VtsLq~a 1560 (1922)
+..+..+.+|. ..|++++|+|+ | ++|++|+.||.|++||+.+++. ...+.+| ...|+++ .
T Consensus 52 ~~~~~~~~~h~-~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 128 (397)
T 1sq9_A 52 KDKSYSHFVHK-SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL--K 128 (397)
T ss_dssp GGGEEEEECCT-TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEE--E
T ss_pred CCcceEEecCC-CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEE--E
Confidence 34688888999 99999999999 9 9999999999999999999887 8888889 5999999 7
Q ss_pred ec----CCCcE-EEEe-cCCcEEEeccCCCC----CCcce-----Eecc-----------ceeEEEcCCCCEEEEeecCC
Q 000177 1561 LS----GETQL-LLSS-SSQDVHLWNASSIA----GGPMH-----SFEG-----------CKAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1561 fS----pDG~l-LaSS-sDgtVkLWDl~t~~----gk~l~-----tf~g-----------h~sVaFSPDG~~LaSgS~~S 1614 (1922)
|+ |++++ |+++ .|+.|++||+.+.. +..+. .+.+ +++++|+|++ +|+++ +
T Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~---~ 204 (397)
T 1sq9_A 129 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG---F 204 (397)
T ss_dssp EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE---C
T ss_pred EeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE---e
Confidence 88 99998 8885 69999999997510 12333 5532 4889999999 99998 8
Q ss_pred CCCeEEEEECCCCceeeeeccccccccCC---CCcceEEEEcCCCCeEeec------c--EEEEcCCCcceeeecc----
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNLTGR---GHAYSQIHFSPSDTMLLWN------G--ILWDRRNSVPVHRFDQ---- 1679 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~~~~---gh~~~vVaFSPdG~lLaSg------g--rLWDlrtgk~I~kf~g---- 1679 (1922)
.|+.|++||+++++.+..+... ..+ ......++|+|++++|+++ + ++||+++++++..+.+
T Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 205 NNGTVQISELSTLRPLYNFESQ----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECC----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred CCCcEEEEECCCCceeEEEecc----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence 8999999999999988888610 001 3345569999999999965 3 8999999999999998
Q ss_pred ---------CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc------CC---------------Cc--eeE
Q 000177 1680 ---------FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP------SL---------------DQ--TTI 1721 (1922)
Q Consensus 1680 ---------h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~------gH---------------~~--~sV 1721 (1922)
|...+ +++|+|++++|++++ .|||+++++++.++. +| .. +++
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 88888 999999999999998 599999999999999 66 54 899
Q ss_pred EEccCC----------CEEEEEE
Q 000177 1722 TFNARG----------DVIYAIL 1734 (1922)
Q Consensus 1722 aFSPdG----------~~LaSgs 1734 (1922)
+|+|+| ++|+++.
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEE
T ss_pred EeccccccccccccccceEEEec
Confidence 999999 7888885
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=234.69 Aligned_cols=273 Identities=14% Similarity=0.228 Sum_probs=221.1
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+.|.....+.+.++.+|. +.|++++|+ +++|++|+.||+|++||+.+++.+.++.+|...|.++ .|+ +.++++
T Consensus 142 ~vwd~~~~~~~~~~~~h~-~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~--~~~l~s 214 (445)
T 2ovr_B 142 KVWSAVTGKCLRTLVGHT-GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM--HLH--EKRVVS 214 (445)
T ss_dssp EEEETTTCCEEEECCCCS-SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EEE--TTEEEE
T ss_pred EEEECCCCcEEEEEcCCC-CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE--Eec--CCEEEE
Confidence 334456778889999999 999999998 6799999999999999999999999999999999999 564 456666
Q ss_pred -ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 -SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 -SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+.|++|++||+.+ ++++..+.+| .++.| ++++++++ +.|+.|++||+++++++.++. +|
T Consensus 215 ~s~dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~---------~~ 278 (445)
T 2ovr_B 215 GSRDATLRVWDIET--GQCLHVLMGHVAAVRCVQY--DGRRVVSG---AYDFMVKVWDPETETCLHTLQ---------GH 278 (445)
T ss_dssp EETTSEEEEEESSS--CCEEEEEECCSSCEEEEEE--CSSCEEEE---ETTSCEEEEEGGGTEEEEEEC---------CC
T ss_pred EeCCCEEEEEECCC--CcEEEEEcCCcccEEEEEE--CCCEEEEE---cCCCEEEEEECCCCcEeEEec---------CC
Confidence 5699999999998 7788888765 66777 78899998 889999999999999988885 55
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
...+.++..++.++++++ ++||+++++++..+.+|...+ ++.+ +++++++++ ++||+++++.+.++.
T Consensus 279 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 555533344888999877 999999999999999998877 5555 567999988 599999999999998
Q ss_pred C---CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee------ccCCceEEEEE
Q 000177 1715 S---LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI------PVDRCVLDFAT 1783 (1922)
Q Consensus 1715 g---H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi------dvkr~I~dLa~ 1783 (1922)
+ |.. ++++|+ +.+|+++.. +..+++|+..+.+.+..+ .....|..++|
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~-------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 415 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSD-------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 415 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEET-------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeC-------------------CCeEEEEECCCCceeeeeeccccCCCCceEEEEEe
Confidence 6 444 678885 578888852 345777887777777666 33556999999
Q ss_pred cCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1784 ERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1784 SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+|++.++++...+.. ....+.+|+.+
T Consensus 416 s~~~~~la~~~~dg~--~~~~l~v~df~ 441 (445)
T 2ovr_B 416 SNTKLVCAVGSRNGT--EETKLLVLDFD 441 (445)
T ss_dssp CSSEEEEEEECSSSS--SCCEEEEEECC
T ss_pred cCCEEEEEEcccCCC--CccEEEEEECC
Confidence 999999888754433 23678899864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=220.90 Aligned_cols=261 Identities=15% Similarity=0.206 Sum_probs=206.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
+++|+||+++ +|++|. |++|+|||+.+++++.++ .+|...|+++ .|+|++++|++| .|++|+|||+.+ +++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v--~~~~~~~~l~sgs~Dg~v~iw~~~~--~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSV--AWIKEGNYLAVGTSSAEVQLWDVQQ--QKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEE--EECTTSSEEEEEETTSEEEEEETTT--TEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEE--EECCCCCEEEEEECCCcEEEeecCC--cee
Confidence 5789999886 777765 999999999999988877 4678889999 899999999995 599999999998 888
Q ss_pred ceEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee-eeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1589 MHSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE-AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1589 l~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i-~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
+..+.+| ....+++++..++++ +.++.+++|+..+.... ..+. ++......+.|+++++++++++
T Consensus 102 ~~~~~~h~~~~~~~~~~~~~l~s~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d 171 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNSYILSSG---SRSGHIHHHDVRVAEHHVATLS-------GHSQEVCGLRWAPDGRHLASGGND 171 (318)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEE---ETTSEEEEEETTSSSCEEEEEE-------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEecCccceEEEeecCCCEEEEE---ecCCceEeeecCCCceeEEEEc-------CccCceEEEEEcCCCCEEEEEecC
Confidence 8888887 456677788999998 88899999999876543 3332 2233445599999999999877
Q ss_pred ---EEEEcCCCcc----eeeeccCCCce-EEEEecCCCEEE-E--Ee-----EEEecCCCeEEEEEcCCCc-eeEEEccC
Q 000177 1664 ---ILWDRRNSVP----VHRFDQFTDHG-GGGFHPAGNEVI-I--NS-----EVWDLRKFRLLRSVPSLDQ-TTITFNAR 1726 (1922)
Q Consensus 1664 ---rLWDlrtgk~----I~kf~gh~~~V-sVaFSPdG~~LA-S--GS-----eIWDLrTgklL~tl~gH~~-~sVaFSPd 1726 (1922)
++||+++++. +.....+...+ ++.|+|++..++ + ++ ++||.++.........+.. ..+.|+|+
T Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~ 251 (318)
T 4ggc_A 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 251 (318)
T ss_dssp SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETT
T ss_pred cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccc
Confidence 8999998764 34455666677 889999876433 3 32 5999999888777665444 89999999
Q ss_pred CCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceE
Q 000177 1727 GDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSA 1805 (1922)
Q Consensus 1727 G~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsV 1805 (1922)
+..++++... .+..+++||..+.+.+.++.. ...|.+++|+|++.+|+... .|+.|
T Consensus 252 ~~~~~~~sg~-----------------~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s------~D~~v 308 (318)
T 4ggc_A 252 YKELISGHGF-----------------AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA------ADETL 308 (318)
T ss_dssp TTEEEEEECT-----------------TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE------TTTEE
T ss_pred ccceEEEEEc-----------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe------cCCeE
Confidence 9999887421 234578889888888888875 55799999999999998653 45789
Q ss_pred EEEEec
Q 000177 1806 RIYEIG 1811 (1922)
Q Consensus 1806 RLyEVG 1811 (1922)
++|++-
T Consensus 309 ~iWd~~ 314 (318)
T 4ggc_A 309 RLWRCF 314 (318)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 999873
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=249.36 Aligned_cols=241 Identities=12% Similarity=0.149 Sum_probs=184.0
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccC--CCCeeEE
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSH--QAPVTLV 1557 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH--ss~VtsL 1557 (1922)
.|+.+|....|.+..........+.+|. +.|++|+|+| ++++|+||+.||+|+|||+.++........| ...+.++
T Consensus 137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~-~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 215 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIKDKPTFIKGIGAG-GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSL 215 (435)
T ss_dssp EEETTSCEEEECSSCCSCCEEECCCSSS-CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCE
T ss_pred EEeCCCEEEEEECCCCCceeEEEccCCC-CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEE
Confidence 4555566666655444445556677999 9999999998 7899999999999999999766543333333 4456777
Q ss_pred EeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceee
Q 000177 1558 QSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1558 q~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
.|+|++++|+++ .|++|++||++. +.+.++.+| ++++|+|++. +|+++ +.|++|+|||+++.+...
T Consensus 216 --~~~~~~~~l~~g~~dg~i~~wd~~~---~~~~~~~~h~~~v~~v~~~p~~~~~~~s~---s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 216 --DVSASSRMVVTGDNVGNVILLNMDG---KELWNLRMHKKKVTHVALNPCCDWFLATA---SVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp --EEETTTTEEEEECSSSBEEEEESSS---CBCCCSBCCSSCEEEEEECTTCSSEEEEE---ETTSBCCEEETTTCCSSS
T ss_pred --EECCCCCEEEEEeCCCcEeeeccCc---ceeEEEecccceEEeeeecCCCceEEEEe---cCcceeeEEecccccccc
Confidence 889999999996 599999999974 566677664 7899999876 67777 789999999999877655
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC-------ceEEEEecCCCEEEEEe
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD-------HGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~-------~VsVaFSPdG~~LASGS 1699 (1922)
.+. ....+...+..++|+|+|++|++++ ++||++++.+...+..|.. .+.+.|+|++.++++++
T Consensus 288 ~~~----~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
T 4e54_B 288 SFL----YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363 (435)
T ss_dssp CCS----BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred eEE----EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence 442 1112333455599999999999887 8999999988877766543 22678899888887764
Q ss_pred -----------------EEEecCCCeEEEEEcC-CCc--eeE-EEccCCCEEEEEE
Q 000177 1700 -----------------EVWDLRKFRLLRSVPS-LDQ--TTI-TFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -----------------eIWDLrTgklL~tl~g-H~~--~sV-aFSPdG~~LaSgs 1734 (1922)
++||..+++++.++.. |.. .++ +|||+|++|+++.
T Consensus 364 ~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred cCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 4999999999988764 433 455 7999999999873
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=236.25 Aligned_cols=269 Identities=16% Similarity=0.280 Sum_probs=215.4
Q ss_pred eeeecCceeeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+|...++++.+.+.+|. +. ++|+.| +|++|++|+.||+|+|||+.+++.+.++.+|...|+++ .|+ +.+|++
T Consensus 102 ~w~~~~~~~~~~l~~h~-~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~--~~~l~s 174 (445)
T 2ovr_B 102 NWRRGELKSPKVLKGHD-DHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS--QMR--DNIIIS 174 (445)
T ss_dssp HHHHSCCCCCEEEECST-TSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEE--EEE--TTEEEE
T ss_pred cccCCCcceeEEecccC-CCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEE--Eec--CCEEEE
Confidence 34445666778899999 65 566555 68999999999999999999999999999999999999 665 457777
Q ss_pred -ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 -SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 -SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+.|++|++||+.+ ++++.++.+| .++.|+ ++.++++ +.|++|++||+.+++.+..+. +|
T Consensus 175 ~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~---s~dg~i~~wd~~~~~~~~~~~---------~~ 238 (445)
T 2ovr_B 175 GSTDRTLKVWNAET--GECIHTLYGHTSTVRCMHLH--EKRVVSG---SRDATLRVWDIETGQCLHVLM---------GH 238 (445)
T ss_dssp EETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE--TTEEEEE---ETTSEEEEEESSSCCEEEEEE---------CC
T ss_pred EeCCCeEEEEECCc--CcEEEEECCCCCcEEEEEec--CCEEEEE---eCCCEEEEEECCCCcEEEEEc---------CC
Confidence 5699999999998 7788888775 567774 6789998 889999999999999988876 45
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
...+.++..+++++++++ ++||+++++++.++.+|...+ ++.| ++.++++++ ++||+++++++.++.
T Consensus 239 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 316 (445)
T 2ovr_B 239 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316 (445)
T ss_dssp SSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred cccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc
Confidence 555533333788888777 999999999999999999888 8888 889999998 599999999999999
Q ss_pred CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc----CCceEEEEEcCCCceE
Q 000177 1715 SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV----DRCVLDFATERTDSFV 1790 (1922)
Q Consensus 1715 gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv----kr~I~dLa~SPdds~L 1790 (1922)
+|......+.+++.+++++.. +..+++||..+...+.++.. ...|..++|+ +.++
T Consensus 317 ~~~~~v~~~~~~~~~l~~~~~-------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 317 GHQSLTSGMELKDNILVSGNA-------------------DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CCCSCEEEEEEETTEEEEEET-------------------TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred CCcccEEEEEEeCCEEEEEeC-------------------CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 998755555567789998852 34567778777777777753 4569999996 4666
Q ss_pred EEEecCCCCCccceEEEEEecC
Q 000177 1791 GLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1791 AVVe~dds~d~dSsVRLyEVGr 1812 (1922)
++.. .++.+++|++..
T Consensus 376 ~s~~------~dg~v~iwd~~~ 391 (445)
T 2ovr_B 376 ITSS------DDGTVKLWDLKT 391 (445)
T ss_dssp EEEE------TTSEEEEEETTT
T ss_pred EEEe------CCCeEEEEECCC
Confidence 6553 347899998743
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=232.21 Aligned_cols=219 Identities=15% Similarity=0.239 Sum_probs=180.5
Q ss_pred CCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEec
Q 000177 1507 DAGALLTCITFLGD----SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPD----G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWD 1580 (1922)
|. ..|++++|+|+ |++|++|+.||.|+|||+.+++.+..+.+|...|+++ .|+| ++++|+++ .|++|++||
T Consensus 68 ~~-~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 68 AD-ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINEL--KFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TT-CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEE--EECSSCTTEEEEEETTSCEEEEE
T ss_pred CC-CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEE--EECCCCCCEEEEEeCCCeEEEEE
Confidence 55 78999999998 6799999999999999999999999999999999999 8899 89999885 599999999
Q ss_pred cCCCCCCcceEe---cc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc-----------------
Q 000177 1581 ASSIAGGPMHSF---EG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT----------------- 1636 (1922)
Q Consensus 1581 l~t~~gk~l~tf---~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~----------------- 1636 (1922)
+.+ ++.+..+ .+ +.+++|+|++++|+++ +.|+.|++||+++++....+...
T Consensus 145 ~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 145 IQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC---GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTT--TEEEEEECSTTSCSSCEEEEEECTTSSEEEEE---ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred eec--CeEEEEecccccccCceeEEEECCCCCEEEEe---cCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 987 6777776 34 3889999999999999 78999999999988765544310
Q ss_pred ----cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcc--------------eeeeccCCCce-EEEEecC-
Q 000177 1637 ----SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVP--------------VHRFDQFTDHG-GGGFHPA- 1691 (1922)
Q Consensus 1637 ----s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~--------------I~kf~gh~~~V-sVaFSPd- 1691 (1922)
......+...+..++|+ ++++++++ ++||++++.. +..+..|...+ +++|+|+
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 297 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence 00001133445558888 77888777 9999998754 77888888888 8999999
Q ss_pred -CCEEEEEe-----EEEecCCCe----EEEEEcCCC--c--eeEEEccCCCEEEEEEc
Q 000177 1692 -GNEVIINS-----EVWDLRKFR----LLRSVPSLD--Q--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1692 -G~~LASGS-----eIWDLrTgk----lL~tl~gH~--~--~sVaFSPdG~~LaSgs~ 1735 (1922)
|++|++++ ++||+.+++ .+..+.+|. . ++++|+|+|++|+++..
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence 99999998 599999875 555788772 3 89999999999999853
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=241.61 Aligned_cols=230 Identities=15% Similarity=0.258 Sum_probs=178.6
Q ss_pred ceeeEEecCCC-----------CCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCCce--------------------
Q 000177 1498 FRPWRTCRDDA-----------GALLTCITFLGDS--SHIAVGSHTKELKIFDSNSSSPL-------------------- 1544 (1922)
Q Consensus 1498 frpirtLrgH~-----------d~~Vt~LaFSPDG--~lLASGS~DGtIkIWDl~tgk~l-------------------- 1544 (1922)
++...++.+|. ++.|++++|+|++ .+|++|+.||+|+|||+.+++..
T Consensus 71 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 150 (447)
T 3dw8_B 71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT 150 (447)
T ss_dssp EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCC
T ss_pred eeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccccc
Confidence 34677888985 2569999999998 89999999999999998764331
Q ss_pred -------------------ee-eccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE-------ecc---
Q 000177 1545 -------------------ES-CTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS-------FEG--- 1594 (1922)
Q Consensus 1545 -------------------~t-L~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t-------f~g--- 1594 (1922)
.. ..+|...|+++ +|+|++++|+++.|++|+|||+... +.++.. +.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 227 (447)
T 3dw8_B 151 TLRVPVFRPMDLMVEASPRRIFANAHTYHINSI--SINSDYETYLSADDLRINLWHLEIT-DRSFNIVDIKPANMEELTE 227 (447)
T ss_dssp SCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE--EECTTSSEEEEECSSEEEEEETTEE-EEEEEEEECCCSSGGGCCC
T ss_pred ceEeccccchheeeeccceEEeccCCCcceEEE--EEcCCCCEEEEeCCCeEEEEECCCC-CceeeeeecccccccccCc
Confidence 13 36899999999 8899999999999999999999841 333332 333
Q ss_pred -ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCce----eeeecccccc---c--cCCCCcceEEEEcCCCCeEeecc
Q 000177 1595 -CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQL----EAKLSDTSVN---L--TGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1595 -h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~----i~tL~d~s~~---~--~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
+++++|+|++ ++|+++ +.|++|++||+++++. +..+...... . ..+...+..++|+|+|++|++++
T Consensus 228 ~v~~~~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 228 VITAAEFHPNSCNTFVYS---SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp CEEEEEECSSCTTEEEEE---ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCcEEEEE---eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 4889999998 999999 8899999999999886 5555410000 0 00001455699999999999877
Q ss_pred ----EEEEcCC-CcceeeeccCCCce----------------EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC
Q 000177 1664 ----ILWDRRN-SVPVHRFDQFTDHG----------------GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1664 ----rLWDlrt-gk~I~kf~gh~~~V----------------sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~ 1717 (1922)
++||+++ ++++..+.+|...+ .++|+|+|++|++++ +|||+.+++.+. +.++.
T Consensus 305 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~ 383 (447)
T 3dw8_B 305 YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASR 383 (447)
T ss_dssp SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCS
T ss_pred CCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecc
Confidence 9999997 88999998886432 399999999999998 599999988763 33221
Q ss_pred -----------------------------------ceeEEEccCCCEEEEEE
Q 000177 1718 -----------------------------------QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1718 -----------------------------------~~sVaFSPdG~~LaSgs 1734 (1922)
...++|+|+|++|+++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp TTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred cccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence 15799999999999884
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-22 Score=244.03 Aligned_cols=263 Identities=15% Similarity=0.169 Sum_probs=211.5
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CceeeeccCCCC-eeEEEeeecC--CCcEEEEe-cCCcEE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----SPLESCTSHQAP-VTLVQSHLSG--ETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----k~l~tL~gHss~-VtsLq~afSp--DG~lLaSS-sDgtVk 1577 (1922)
.|. +.|++++|+|+|++|++|+ ++.|+|||+.++ +....+.+|... |+++ +|+| ++++|+++ .|++|+
T Consensus 16 ~~~-~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~--~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 16 TQR-NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTV--KFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCT-TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEE--EECSSTTCCEEEEEETTSEEE
T ss_pred Ccc-CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEE--EECcCCCCCEEEEecCCCEEE
Confidence 477 8999999999999999999 889999999999 899999999999 9999 8899 99999995 599999
Q ss_pred EeccCCC------CCCcceEecc----ceeEEEcCCCCEEEEeecCCCC----CeEEEEECCCCceeeeeccccccccCC
Q 000177 1578 LWNASSI------AGGPMHSFEG----CKAARFSNSGNLFAALPTETSD----RGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1578 LWDl~t~------~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~D----gtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
|||+.+. ....+..+.. +.+++|+|++++|+++ +.+ +.|++|| +++.+..+. .+
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~~~~~~~~v~~~d--~~~~~~~~~-------~~ 159 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV---GEGRDNFGVFISWD--SGNSLGEVS-------GH 159 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE---ECCSSCSEEEEETT--TCCEEEECC-------SC
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe---ccCCCCccEEEEEE--CCCcceeee-------cC
Confidence 9999741 1245556654 4889999999999998 444 6788888 566666664 12
Q ss_pred CCcceEEEEcCCCC-eEeecc-----EEEEcCCCcceeeeccCCC---ce-EEEEecC-CCEEEEEe-----EEEecCCC
Q 000177 1644 GHAYSQIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQFTD---HG-GGGFHPA-GNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~gh~~---~V-sVaFSPd-G~~LASGS-----eIWDLrTg 1707 (1922)
...+..++|+|+++ ++++++ ++||+.+++++..+.+|.. .+ +++|+|+ |++|++++ .+||++++
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 33445599999998 677766 9999999999999999988 78 9999999 99999998 59999999
Q ss_pred eEEEEE-c---CCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-----C
Q 000177 1708 RLLRSV-P---SLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-----R 1776 (1922)
Q Consensus 1708 klL~tl-~---gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-----r 1776 (1922)
+.+..+ . +|.. .++.|+ ++.+|+++.. +..+++|+..+...+..+... .
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA-------------------DATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET-------------------TSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcC-------------------CCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 999999 5 6765 799999 9999999853 234667777777666666654 4
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+..+.|+ ++.++++.. .++.+++|++.
T Consensus 300 ~~~~~~~~-~~~~l~~~~------~~g~i~~~d~~ 327 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLS------LDGTLNFYELG 327 (615)
T ss_dssp CEEEEEEE-ETTEEEEEE------TTSCEEEEETT
T ss_pred ceeEEEeC-CCCeEEEEE------CCCCEEEEECC
Confidence 57777775 677776553 23567777654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-22 Score=235.10 Aligned_cols=226 Identities=15% Similarity=0.254 Sum_probs=184.5
Q ss_pred eeecCceeeEEecC-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-
Q 000177 1493 FVYSRFRPWRTCRD-DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS- 1570 (1922)
Q Consensus 1493 fi~srfrpirtLrg-H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS- 1570 (1922)
|.....+....+.. |. ..|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|.++ .| ++++|++
T Consensus 118 w~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~--~~--~~~~l~~~ 192 (401)
T 4aez_A 118 WNADSGSVSALAETDES-TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL--SW--NRHVLSSG 192 (401)
T ss_dssp EETTTCCEEEEEECCTT-CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EE--ETTEEEEE
T ss_pred eeCCCCcEeEeeecCCC-CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE--EE--CCCEEEEE
Confidence 33455566666665 77 899999999999999999999999999999999999999999999999 66 4567777
Q ss_pred ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+.|+.|++||++.. ...+..+.+| .+++|+|++++|+++ +.|+.|++||+++++.+..+. .+...
T Consensus 193 ~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~~~~~~~~~-------~~~~~ 261 (401)
T 4aez_A 193 SRSGAIHHHDVRIA-NHQIGTLQGHSSEVCGLAWRSDGLQLASG---GNDNVVQIWDARSSIPKFTKT-------NHNAA 261 (401)
T ss_dssp ETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTCSSEEEEEC-------CCSSC
T ss_pred cCCCCEEEEecccC-cceeeEEcCCCCCeeEEEEcCCCCEEEEE---eCCCeEEEccCCCCCccEEec-------CCcce
Confidence 56999999999851 4556666654 789999999999999 889999999999998888775 12344
Q ss_pred ceEEEEcCCCCeE-eec-----c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-------EEEecCCCeEEE
Q 000177 1647 YSQIHFSPSDTML-LWN-----G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-------EVWDLRKFRLLR 1711 (1922)
Q Consensus 1647 ~~vVaFSPdG~lL-aSg-----g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-------eIWDLrTgklL~ 1711 (1922)
+..++|+|++..+ +++ + ++||+++++++..+..+....+++|+|+|+++++++ .|||+.+++...
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence 5569999987544 443 1 899999999999887554434999999999999843 599999976555
Q ss_pred E--EcCCCc--eeEEEccCCCEEEEEE
Q 000177 1712 S--VPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1712 t--l~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
. +.+|.. .+++|+|+|.+|+++.
T Consensus 342 ~~~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 342 QVDIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp EEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 4 567766 7999999999999984
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=240.49 Aligned_cols=220 Identities=12% Similarity=0.184 Sum_probs=188.3
Q ss_pred eeeEEecCCCCCC-EEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------CceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1499 RPWRTCRDDAGAL-LTCITFLG--DSSHIAVGSHTKELKIFDSNSS--------SPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1499 rpirtLrgH~d~~-Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tg--------k~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
++.+.+.+|. +. |++++|+| ++++|++|+.||+|+|||+.++ +....+.+|..+|+++ .|+|++++
T Consensus 54 ~~~~~~~~h~-~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~ 130 (615)
T 1pgu_A 54 PPVVQFTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI--SWDFEGRR 130 (615)
T ss_dssp CSEEEECTTT-TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEE--EECTTSSE
T ss_pred ccceEEecCC-CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEE--EEeCCCCE
Confidence 7888999999 89 99999999 9999999999999999999755 6677889999999999 89999999
Q ss_pred EEEec-C----CcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1568 LLSSS-S----QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1568 LaSSs-D----gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
|+++. + +.|++||. ++.+..+.+| ++++|+|+++ +++++ +.|+.|++||+.+++.+.++.
T Consensus 131 l~~~~~~~~~~~~v~~~d~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~v~vwd~~~~~~~~~~~--- 200 (615)
T 1pgu_A 131 LCVVGEGRDNFGVFISWDS----GNSLGEVSGHSQRINACHLKQSRPMRSMTV---GDDGSVVFYQGPPFKFSASDR--- 200 (615)
T ss_dssp EEEEECCSSCSEEEEETTT----CCEEEECCSCSSCEEEEEECSSSSCEEEEE---ETTTEEEEEETTTBEEEEEEC---
T ss_pred EEEeccCCCCccEEEEEEC----CCcceeeecCCccEEEEEECCCCCcEEEEE---eCCCcEEEEeCCCcceeeeec---
Confidence 99854 4 68999993 4567777765 7899999997 78888 889999999999999988875
Q ss_pred ccccCCCC---cceEEEEcCC-CCeEeecc-----EEEEcCCCcceeee-c---cCCCce-EEEEecCCCEEEEEe----
Q 000177 1638 VNLTGRGH---AYSQIHFSPS-DTMLLWNG-----ILWDRRNSVPVHRF-D---QFTDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1638 ~~~~~~gh---~~~vVaFSPd-G~lLaSgg-----rLWDlrtgk~I~kf-~---gh~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
.+.. ....++|+|+ +++|++++ ++||+++++.+..+ . .|...+ ++.|+ ++.+|++++
T Consensus 201 ----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 201 ----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275 (615)
T ss_dssp ----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred ----ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence 1122 4455999999 99999776 99999999999999 6 788888 99999 999999998
Q ss_pred -EEEecCCCeEEEEEcCCC----c--eeEEEccCCCEEEEEEccC
Q 000177 1700 -EVWDLRKFRLLRSVPSLD----Q--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 -eIWDLrTgklL~tl~gH~----~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
++||+++++.+..+..+. . .++.|+ ++.+++++..+.
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g 319 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG 319 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence 599999999999998762 1 577775 888999886443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-22 Score=227.89 Aligned_cols=208 Identities=10% Similarity=0.061 Sum_probs=168.6
Q ss_pred CccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--eccCCCCeeEEEeee
Q 000177 1484 VHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--CTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1484 ~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--L~gHss~VtsLq~af 1561 (1922)
.++....+.+....++.+.++.+|. ..|++++|+|++++|++|+.||.|++||+.+++.... +..|...|+++ .|
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~--~~ 104 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELKEHN-GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV--RW 104 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCS-SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEE--EE
T ss_pred CCCEEEEEeCCCCcEEeeeeecCCC-CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEE--EE
Confidence 3333334433222334888999999 9999999999999999999999999999988875544 47899999999 88
Q ss_pred cCCCcEEEEe-cCCcEEEeccCCCCCCc---ceEe-cc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECC-------
Q 000177 1562 SGETQLLLSS-SSQDVHLWNASSIAGGP---MHSF-EG----CKAARFSNSGNLFAALPTETSDRGILLYDIQ------- 1625 (1922)
Q Consensus 1562 SpDG~lLaSS-sDgtVkLWDl~t~~gk~---l~tf-~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr------- 1625 (1922)
+|++++|+++ .|+.|++||+.. ... ...+ .. +.+++|+|++++|+++ +.|+.|++||++
T Consensus 105 ~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~~~~ 179 (372)
T 1k8k_C 105 APNEKKFAVGSGSRVISICYFEQ--ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG---SCDFKCRIFSAYIKEVEER 179 (372)
T ss_dssp CTTSSEEEEEETTSSEEEEEEET--TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE---ETTSCEEEEECCCTTTSCC
T ss_pred CCCCCEEEEEeCCCEEEEEEecC--CCcceeeeeeecccCCCeeEEEEcCCCCEEEEE---cCCCCEEEEEccccccccc
Confidence 9999999985 599999999987 442 2222 22 4889999999999999 789999999964
Q ss_pred -----------CCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEE
Q 000177 1626 -----------TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGF 1688 (1922)
Q Consensus 1626 -----------Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaF 1688 (1922)
+++.+..+. .+......++|+|++++|++++ ++||+++++++..+..|...+ +++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 252 (372)
T 1k8k_C 180 PAPTPWGSKMPFGELMFESS-------SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 252 (372)
T ss_dssp CCCBTTBSCCCTTCEEEECC-------CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred ccccccccccchhhheEecC-------CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEE
Confidence 556666554 1233455599999999999877 999999999999999998888 9999
Q ss_pred ecCCCEEEEEe----EEEecCC
Q 000177 1689 HPAGNEVIINS----EVWDLRK 1706 (1922)
Q Consensus 1689 SPdG~~LASGS----eIWDLrT 1706 (1922)
+|++.+|+++. .+|++.+
T Consensus 253 ~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 253 ITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EETTEEEEEETTSSCEEEEEET
T ss_pred ecCCCEEEEEeCCeEEEEEccC
Confidence 99999999887 5999987
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-21 Score=229.79 Aligned_cols=289 Identities=12% Similarity=0.130 Sum_probs=223.7
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-----eeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-----SCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-----tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
++.+..+..|. .+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|+++ .|++++++++++
T Consensus 113 ~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~s~~ 188 (433)
T 3bws_A 113 HRFISRFKTGF--QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETI--SIPEHNELWVSQM 188 (433)
T ss_dssp EEEEEEEECSS--CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEE--EEGGGTEEEEEEG
T ss_pred ceEEEEEcCCC--CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEE--EEcCCCEEEEEEC
Confidence 35566666554 46699999988888999999999999999998877 456899999999 789999999996
Q ss_pred cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
.|+.|++||+.+ ++.+.++.. ..+++|+|+++++++++ +.|+.|++||+++++.+..+. .....
T Consensus 189 ~d~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~d~~~~~~~~~~~--------~~~~~ 256 (433)
T 3bws_A 189 QANAVHVFDLKT--LAYKATVDLTGKWSKILLYDPIRDLVYCSN--WISEDISVIDRKTKLEIRKTD--------KIGLP 256 (433)
T ss_dssp GGTEEEEEETTT--CCEEEEEECSSSSEEEEEEETTTTEEEEEE--TTTTEEEEEETTTTEEEEECC--------CCSEE
T ss_pred CCCEEEEEECCC--ceEEEEEcCCCCCeeEEEEcCCCCEEEEEe--cCCCcEEEEECCCCcEEEEec--------CCCCc
Confidence 489999999987 777777764 37899999999885541 578999999999998887775 12234
Q ss_pred eEEEEcCCCCeEeecc-------------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEE-e-----EEEecCCCe
Q 000177 1648 SQIHFSPSDTMLLWNG-------------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIIN-S-----EVWDLRKFR 1708 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-------------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASG-S-----eIWDLrTgk 1708 (1922)
..++|+|+|+++++++ ++||+++++.+..+.......+++|+|+|++++.. + .+||+.+++
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 4599999999888654 49999999887766333333389999999876554 4 599999999
Q ss_pred EEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCC
Q 000177 1709 LLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1709 lL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdd 1787 (1922)
.+..++.... .+++|+|+|++++++........ .........+..+.+||..+.+.+..+.....+..++|+|++
T Consensus 337 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~----~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 412 (433)
T 3bws_A 337 VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPT----EGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDN 412 (433)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTT----TCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccc----cccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCC
Confidence 9988874333 89999999999998854321100 001112334568899999888888888887889999999999
Q ss_pred ceEEEEecCCCCCccceEEEEEec
Q 000177 1788 SFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1788 s~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.++++... .+..+++|++.
T Consensus 413 ~~l~~~~~-----~d~~i~v~~~~ 431 (433)
T 3bws_A 413 RYLVISDF-----LDHQIRVYRRD 431 (433)
T ss_dssp CEEEEEET-----TTTEEEEEEET
T ss_pred CEEEEEEC-----CCCeEEEEEec
Confidence 99987642 24789999874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-22 Score=235.66 Aligned_cols=266 Identities=12% Similarity=0.153 Sum_probs=201.7
Q ss_pred CEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC----CceeeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEeccCC
Q 000177 1511 LLTCITFLGDSSH-IAVGSHTKELKIFDSNSS----SPLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~l-LASGS~DGtIkIWDl~tg----k~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWDl~t 1583 (1922)
...+++++|+... +++|+.||.|+||++.+. ..+..+.+|...|+++ .|+| ++++|+++ .|++|+|||+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~--~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDI--AWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEE--EECTTCTTEEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEE--EeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 3457889987764 446899999999999654 3456778999999999 8899 89999985 599999999987
Q ss_pred CCC-----CcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEc
Q 000177 1584 IAG-----GPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1584 ~~g-----k~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
... .++..+.+| ++++|+|++ ++|+++ +.|++|++||+++++.+.++.. ..+...+..++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA---GCDNVILVWDVGTGAAVLTLGP-----DVHPDTIYSVDWS 185 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE---ETTSCEEEEETTTTEEEEEECT-----TTCCSCEEEEEEC
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE---cCCCEEEEEECCCCCccEEEec-----CCCCCceEEEEEC
Confidence 211 566777765 789999998 689998 8899999999999998887720 0123345559999
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeee-ccCCCc-e-EEEEecCCCEEEEE---e-----EEEecCCCeE-EEEEc-C
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRF-DQFTDH-G-GGGFHPAGNEVIIN---S-----EVWDLRKFRL-LRSVP-S 1715 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf-~gh~~~-V-sVaFSPdG~~LASG---S-----eIWDLrTgkl-L~tl~-g 1715 (1922)
|++++|++++ ++||+++++.+..+ ..|... + ++.|+|+|.+|++| + .+||+++++. +.... .
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 9999999877 99999999999998 788765 4 99999999999998 3 4999998654 32222 2
Q ss_pred CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc----eeeeeccCCceEEEEEcCCCce
Q 000177 1716 LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS----DIATIPVDRCVLDFATERTDSF 1789 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys----~IaTidvkr~I~dLa~SPdds~ 1789 (1922)
+.. .+++|+|+|.+|+++...+ ..+++|+..+.. .+..+.....|..++|+|++.+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~d------------------g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~ 327 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGD------------------SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGL 327 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTC------------------SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGS
T ss_pred CCCceeEEEEcCCCCEEEEEEcCC------------------CeEEEEEecCCCcceEeecccccCCcccceEEeccccc
Confidence 322 7999999999998664322 345566655544 2333334577999999999987
Q ss_pred EEEEecCCCCCccceEEEEEecC
Q 000177 1790 VGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
++. .+..+++|++..
T Consensus 328 ~~s--------~~~~~~~~~l~~ 342 (402)
T 2aq5_A 328 EVN--------KCEIARFYKLHE 342 (402)
T ss_dssp CGG--------GTEEEEEEEEET
T ss_pred cee--------cceeEEEEEcCC
Confidence 651 224788887643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=236.98 Aligned_cols=267 Identities=9% Similarity=0.051 Sum_probs=204.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceeeecc-------------------------------------
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---PLESCTS------------------------------------- 1549 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---~l~tL~g------------------------------------- 1549 (1922)
.+|+|++|+++|++|+++ .++.|++||+.+|+ .+.++..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 458899999999966655 57899999999998 6655543
Q ss_pred -----------------CCCCeeEEEeeecCCCcEE-EEe-cCCcEEEeccC--CCCCCcceEecc------ceeEEEcC
Q 000177 1550 -----------------HQAPVTLVQSHLSGETQLL-LSS-SSQDVHLWNAS--SIAGGPMHSFEG------CKAARFSN 1602 (1922)
Q Consensus 1550 -----------------Hss~VtsLq~afSpDG~lL-aSS-sDgtVkLWDl~--t~~gk~l~tf~g------h~sVaFSP 1602 (1922)
|.+.|+++ +|+|++++| +++ .|++|+|||+. + +.++..+.. +.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~d~~~l~~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNL--RLTSDESRLIACADSDKSLLVFDVDKTS--KNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp ----------------CCCCCEEEE--EECTTSSEEEEEEGGGTEEEEEEECSSS--SSCEEEEEEEECSSCEEEEEECT
T ss_pred ccccCccccCCCCCCCccCCceEEE--EEcCCCCEEEEEECCCCeEEEEECcCCC--CceeeeeecccCCCCceEEEEcC
Confidence 34479999 899999996 666 59999999998 5 677777642 37899999
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCceee----eeccccccccCCCCcceEEEEcCC---CCeEeecc-----EEEEcCC
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQLEA----KLSDTSVNLTGRGHAYSQIHFSPS---DTMLLWNG-----ILWDRRN 1670 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~i~----tL~d~s~~~~~~gh~~~vVaFSPd---G~lLaSgg-----rLWDlrt 1670 (1922)
++++|+++ +.|+.|++||+.+++... .+. ++...+..++|+|+ +++|++++ ++||+++
T Consensus 160 ~~~~l~~~---~~~g~v~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 160 DDTTVIIA---DKFGDVYSIDINSIPEEKFTQEPIL-------GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp TSSEEEEE---ETTSEEEEEETTSCCCSSCCCCCSE-------ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCCEEEEE---eCCCcEEEEecCCcccccccceeee-------cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 99999999 779999999999877543 332 12334555999999 99999887 9999999
Q ss_pred Ccceee-eccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC---------------------------
Q 000177 1671 SVPVHR-FDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL--------------------------- 1716 (1922)
Q Consensus 1671 gk~I~k-f~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH--------------------------- 1716 (1922)
++++.. +.+|...+ +++|+ +|++|++++ +|||+++++++.++..+
T Consensus 230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 998888 55888888 99999 999999999 59999999999888632
Q ss_pred CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEec--CCC---ceeeeeccCCceEEEEEcCCCceEE
Q 000177 1717 DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDA--INY---SDIATIPVDRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1717 ~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da--~dy---s~IaTidvkr~I~dLa~SPdds~LA 1791 (1922)
....++|+|+|++|+++...+ ..+++|+. ... ..+.++.....|.+++|+|+ ..++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d------------------~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~v 369 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEAT------------------KCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND-EFQV 369 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTC------------------SEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT-EEEE
T ss_pred EEEEEEEeCCCCEEEEEECCC------------------CeEEEEEeccCCCCceeeccEeccCCceEEEEecCC-cEEE
Confidence 126899999999999985322 23455555 222 55666666778999999995 4444
Q ss_pred EEecCC-CCCccceEEEEEec
Q 000177 1792 LITMDD-QEDMFSSARIYEIG 1811 (1922)
Q Consensus 1792 VVe~dd-s~d~dSsVRLyEVG 1811 (1922)
.+...+ .......+++|.+.
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEE
T ss_pred EEecccCCCCCCcceEEEEEE
Confidence 443221 11124568899864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-22 Score=233.04 Aligned_cols=221 Identities=15% Similarity=0.185 Sum_probs=174.5
Q ss_pred cCceeeEEec--CCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeecc---CCCCeeEEEeeecCCCcEEE
Q 000177 1496 SRFRPWRTCR--DDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTS---HQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1496 srfrpirtLr--gH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~g---Hss~VtsLq~afSpDG~lLa 1569 (1922)
...+....+. +|. +.|++++|+| ++++|++|+.|++|++||+.+ ..+..+.. |...|+++ .|+|++++|+
T Consensus 104 ~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~ 179 (383)
T 3ei3_B 104 DVQNKTSFIQGMGPG-DAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCV--DVSVSRQMLA 179 (383)
T ss_dssp TSTTCEEEECCCSTT-CBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEE--EEETTTTEEE
T ss_pred CCcccceeeecCCcC-CceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEE--EECCCCCEEE
Confidence 3344444444 799 9999999999 789999999999999999985 55556644 45889999 8899999999
Q ss_pred Ee-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCC----Cceeeeecccccc
Q 000177 1570 SS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQT----YQLEAKLSDTSVN 1639 (1922)
Q Consensus 1570 SS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrT----gk~i~tL~d~s~~ 1639 (1922)
++ .|+.|++||+. ++++..+.+| .+++|+|+++ +|+++ +.|++|++||+++ +.++..+.
T Consensus 180 ~~~~d~~i~i~d~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~----- 248 (383)
T 3ei3_B 180 TGDSTGRLLLLGLD---GHEIFKEKLHKAKVTHAEFNPRCDWLMATS---SVDATVKLWDLRNIKDKNSYIAEMP----- 248 (383)
T ss_dssp EEETTSEEEEEETT---SCEEEEEECSSSCEEEEEECSSCTTEEEEE---ETTSEEEEEEGGGCCSTTCEEEEEE-----
T ss_pred EECCCCCEEEEECC---CCEEEEeccCCCcEEEEEECCCCCCEEEEE---eCCCEEEEEeCCCCCcccceEEEec-----
Confidence 95 59999999994 5677777764 7899999998 89998 8899999999998 55555553
Q ss_pred ccCCCCcceEEEEcC-CCCeEeecc-----EEEEcCCCcceeeeccCC-------CceEEEEecCCCEEE---------E
Q 000177 1640 LTGRGHAYSQIHFSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQFT-------DHGGGGFHPAGNEVI---------I 1697 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtgk~I~kf~gh~-------~~VsVaFSPdG~~LA---------S 1697 (1922)
+...+..++|+| ++++|++++ ++||+++++.+..+.+|. ..+.+.|+|++..++ +
T Consensus 249 ---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s 325 (383)
T 3ei3_B 249 ---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLL 325 (383)
T ss_dssp ---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTC
T ss_pred ---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccc
Confidence 344556699999 999999877 999999998877776553 223345555554444 3
Q ss_pred Ee-----EEEecCCCeEEEEEcCCC--c--eeEEEccCCCEEEEEE
Q 000177 1698 NS-----EVWDLRKFRLLRSVPSLD--Q--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~gH~--~--~sVaFSPdG~~LaSgs 1734 (1922)
++ +|||+.+++++.++.++. . ..++|+|+|++|+++.
T Consensus 326 ~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 326 LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 33 599999999999998754 2 5779999999999984
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=220.20 Aligned_cols=233 Identities=14% Similarity=0.211 Sum_probs=184.1
Q ss_pred ceeeecCceeeEEec--CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1491 RQFVYSRFRPWRTCR--DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1491 r~fi~srfrpirtLr--gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
+-|...+++.+++++ +|. ..|++++|+|++++|++|+.||+|+|||+.+++++.++.+|...+.++ .+ ++.++
T Consensus 48 ~iWd~~tg~~~~~~~~~~~~-~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~--~~--~~~~l 122 (318)
T 4ggc_A 48 YLWSASSGDILQLLQMEQPG-EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SW--NSYIL 122 (318)
T ss_dssp EEEETTTCCEEEEEECCSTT-CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EE--ETTEE
T ss_pred EEEECCCCCEEEEEEecCCC-CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe--ec--CCCEE
Confidence 334455667677665 577 889999999999999999999999999999999999999999998887 44 56788
Q ss_pred EEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1569 LSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1569 aSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+++ .++.+++|+.... ...+..+.+| ..+.|++++++|+++ +.|++|++||+++++....... ....+
T Consensus 123 ~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~---~~~~~ 195 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASG---GNDNLVNVWPSAPGEGGWVPLQ---TFTQH 195 (318)
T ss_dssp EEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEESSCBTTBSCCSE---EECCC
T ss_pred EEEecCCceEeeecCCC-ceeEEEEcCccCceEEEEEcCCCCEEEEE---ecCcceeEEECCCCccccccee---eeccc
Confidence 885 5999999998762 3445556554 778999999999999 8899999999998765433220 01112
Q ss_pred CCcceEEEEcCCCCeEe---ecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-------EEEecCCCe
Q 000177 1644 GHAYSQIHFSPSDTMLL---WNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-------EVWDLRKFR 1708 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLa---Sgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-------eIWDLrTgk 1708 (1922)
...+..+.++|++..++ +++ ++||.+.......+..+.....+.|+|++.++++++ +|||+++++
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 33445588999876554 333 899999888777665555444999999999988765 599999999
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
++.++.+|.. ++++|+|+|++|++++.
T Consensus 276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 276 KVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999987 89999999999999863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-21 Score=220.19 Aligned_cols=221 Identities=18% Similarity=0.323 Sum_probs=184.4
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
..+.+++++|. ..|++++|+|+|++|++|+.|+.|++|+............|...+..+ .+++++.+|+++ .|+.+
T Consensus 76 ~~~~~~l~~h~-~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 76 GIPQRALRGHS-HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV--AFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp EEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECTTSSCEEEEETTSCE
T ss_pred ceeeEEEeCCC-CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEE--EEeecCccceeecCCCeE
Confidence 35678899999 999999999999999999999999999999998888888888999988 789999988885 69999
Q ss_pred EEeccCCCCCCc-ceEecc----ceeEEEcCCC--CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--c
Q 000177 1577 HLWNASSIAGGP-MHSFEG----CKAARFSNSG--NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--Y 1647 (1922)
Q Consensus 1577 kLWDl~t~~gk~-l~tf~g----h~sVaFSPDG--~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~ 1647 (1922)
++||+.. ... ...+.+ +..++|++++ .+++++ +.|++|++||+++++.+..+. +|. +
T Consensus 153 ~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~---~~d~~i~i~d~~~~~~~~~~~---------~h~~~v 218 (340)
T 4aow_A 153 KLWNTLG--VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC---GWDKLVKVWNLANCKLKTNHI---------GHTGYL 218 (340)
T ss_dssp EEECTTS--CEEEEECSSSCSSCEEEEEECSCSSSCEEEEE---ETTSCEEEEETTTTEEEEEEC---------CCSSCE
T ss_pred EEEEeCC--CceEEEEeccccCcccceEEccCCCCcEEEEE---cCCCEEEEEECCCCceeeEec---------CCCCcE
Confidence 9999975 222 222333 3678898864 567787 789999999999999888875 444 4
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEc----
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVP---- 1714 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~---- 1714 (1922)
..++|+|++++|++++ ++||+++++++..+..+....++.|+|++.+++++. +|||++++..+..+.
T Consensus 219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 298 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI 298 (340)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC--
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccce
Confidence 4599999999999887 899999999999998776545999999998887776 599999988887765
Q ss_pred -----CCCc--eeEEEccCCCEEEEEEc
Q 000177 1715 -----SLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1715 -----gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+|.. ++++|+|+|++|++++.
T Consensus 299 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 326 (340)
T 4aow_A 299 STSSKAEPPQCTSLAWSADGQTLFAGYT 326 (340)
T ss_dssp -----CCCCCEEEEEECTTSSEEEEEET
T ss_pred eeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence 3433 79999999999999863
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-22 Score=235.06 Aligned_cols=218 Identities=15% Similarity=0.227 Sum_probs=178.5
Q ss_pred eeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCCC-cEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGET-QLLL 1569 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpDG-~lLa 1569 (1922)
..+.++.+|. +.|++++|+| ++++|++|+.||+|+|||+.++ +.+..+.+|...|+++ .|+|++ .+|+
T Consensus 72 ~~~~~~~~h~-~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~l~ 148 (402)
T 2aq5_A 72 KNVPLVCGHT-APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV--AWHPTAQNVLL 148 (402)
T ss_dssp TTCCCBCCCS-SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE--EECSSBTTEEE
T ss_pred CCCceEecCC-CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEE--EECcCCCCEEE
Confidence 3456688999 9999999999 9999999999999999999988 6678899999999999 889998 5787
Q ss_pred E-ecCCcEEEeccCCCCCCcceEe--ccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSF--EGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf--~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
+ +.|++|++||+.+ ++++..+ .+| .+++|+|++++|+++ +.|+.|++||+++++.+..+.
T Consensus 149 s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~-------- 215 (402)
T 2aq5_A 149 SAGCDNVILVWDVGT--GAAVLTLGPDVHPDTIYSVDWSRDGALICTS---CRDKRVRVIEPRKGTVVAEKD-------- 215 (402)
T ss_dssp EEETTSCEEEEETTT--TEEEEEECTTTCCSCEEEEEECTTSSCEEEE---ETTSEEEEEETTTTEEEEEEE--------
T ss_pred EEcCCCEEEEEECCC--CCccEEEecCCCCCceEEEEECCCCCEEEEE---ecCCcEEEEeCCCCceeeeec--------
Confidence 7 5699999999998 7778887 444 789999999999999 889999999999999888773
Q ss_pred CCCc---ceEEEEcCCCCeEeec---c-----EEEEcCCCcc-eeeec-cCCCce-EEEEecCCCEEEEEe------EEE
Q 000177 1643 RGHA---YSQIHFSPSDTMLLWN---G-----ILWDRRNSVP-VHRFD-QFTDHG-GGGFHPAGNEVIINS------EVW 1702 (1922)
Q Consensus 1643 ~gh~---~~vVaFSPdG~lLaSg---g-----rLWDlrtgk~-I~kf~-gh~~~V-sVaFSPdG~~LASGS------eIW 1702 (1922)
.+|. ...+.|+|++++|+++ + ++||+++++. +..+. .+...+ ++.|+|+|++|++++ ++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 1233 4559999999999987 3 8999998764 43333 344445 999999999996543 599
Q ss_pred ecCCCeE-EEEEcCCC--c--eeEEEccCCCEEEE
Q 000177 1703 DLRKFRL-LRSVPSLD--Q--TTITFNARGDVIYA 1732 (1922)
Q Consensus 1703 DLrTgkl-L~tl~gH~--~--~sVaFSPdG~~LaS 1732 (1922)
|+.+++. +..+..|. . ++++|+|++.++++
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred EecCCCcceEeecccccCCcccceEEeccccccee
Confidence 9998873 44444332 2 89999999987764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-21 Score=216.11 Aligned_cols=220 Identities=13% Similarity=0.200 Sum_probs=179.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---CceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS---SPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg---k~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
.|.....+....+..|. ..|++++|+|++++|++|+.||.|++|++... +.+..+.+|...|.++ .| ++.+|
T Consensus 43 vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~--~~~~l 117 (313)
T 3odt_A 43 LWSKDDQWLGTVVYTGQ-GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSL--SF--QDGVV 117 (313)
T ss_dssp EEEESSSEEEEEEEECS-SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEE--EE--ETTEE
T ss_pred EEECCCCEEEEEeecCC-ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEE--Ee--cCCEE
Confidence 34446677788888998 99999999999999999999999999998654 5677889999999999 56 45677
Q ss_pred EE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1569 LS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1569 aS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
++ +.|+.|++||. +..+..+..| .++.|+| ++++++++ +.|+.|++|| .++....+. ..
T Consensus 118 ~~~~~d~~i~~~d~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~i~d--~~~~~~~~~------~~ 182 (313)
T 3odt_A 118 ISGSWDKTAKVWKE----GSLVYNLQAHNASVWDAKVVSFSENKFLTA---SADKTIKLWQ--NDKVIKTFS------GI 182 (313)
T ss_dssp EEEETTSEEEEEET----TEEEEEEECCSSCEEEEEEEETTTTEEEEE---ETTSCEEEEE--TTEEEEEEC------SS
T ss_pred EEEeCCCCEEEEcC----CcEEEecccCCCceeEEEEccCCCCEEEEE---ECCCCEEEEe--cCceEEEEe------cc
Confidence 77 56999999993 4566666654 6788888 89999999 8899999999 344555554 11
Q ss_pred CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
+......++|+|++. +++++ ++||+++++++..+.+|...+ +++|+|+|. |++++ ++||+++++++.
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeE
Confidence 234455699999999 55554 999999999999999999988 999999995 66766 599999999999
Q ss_pred EEcCCCc--eeEEEccCCCEEEEE
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.+..|.. ++++|+|+|++++++
T Consensus 261 ~~~~~~~~i~~~~~~~~~~~~~~~ 284 (313)
T 3odt_A 261 VITLPAISIWSVDCMSNGDIIVGS 284 (313)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEE
T ss_pred EEeccCceEEEEEEccCCCEEEEe
Confidence 9998875 899999999965533
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-22 Score=231.98 Aligned_cols=208 Identities=12% Similarity=0.085 Sum_probs=160.2
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceeeeccCCCCeeEEE
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---PLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---~l~tL~gHss~VtsLq 1558 (1922)
++.++....+.+....++.+.++.+|. +.|++++|+|++++|++|+.||+|+|||+.+++ ....+.+|...|+++
T Consensus 29 ~~~d~~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~- 106 (377)
T 3dwl_C 29 TTATNQVELYEQDGNGWKHARTFSDHD-KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV- 106 (377)
T ss_dssp CCSSSCBCEEEEETTEEEECCCBCCCS-SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE-
T ss_pred ecCCCEEEEEEccCCceEEEEEEecCC-ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE-
Confidence 334444444443322227788899999 999999999999999999999999999999877 677788999999999
Q ss_pred eeecCCCcEEEEe-cCCcEEEeccCCCCCC---cceEecc-c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-
Q 000177 1559 SHLSGETQLLLSS-SSQDVHLWNASSIAGG---PMHSFEG-C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQ- 1628 (1922)
Q Consensus 1559 ~afSpDG~lLaSS-sDgtVkLWDl~t~~gk---~l~tf~g-h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk- 1628 (1922)
.|+|++++|+++ .|++|++||+.+ ++ +...+.+ | ++++|+|++++|+++ +.|++|++||+.++.
T Consensus 107 -~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~ 180 (377)
T 3dwl_C 107 -RWSPNEDKFAVGSGARVISVCYFEQ--ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG---CADRKAYVLSAYVRDV 180 (377)
T ss_dssp -ECCTTSSCCEEEESSSCEEECCC-------CCCCEEECSSCCSCEEEEEECTTSSEEEEE---ESSSCEEEEEECCSSC
T ss_pred -EECCCCCEEEEEecCCeEEEEEECC--cccceeeeEeecccCCCeEEEEEcCCCCEEEEE---eCCCEEEEEEEEeccc
Confidence 889999988885 599999999987 44 3566655 3 789999999999999 889999999996433
Q ss_pred -----------------eeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcc----eeeeccCCC
Q 000177 1629 -----------------LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVP----VHRFDQFTD 1682 (1922)
Q Consensus 1629 -----------------~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~----I~kf~gh~~ 1682 (1922)
++..+ .+...+..++|+|++++|++++ ++||+++++. +..+.+|..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 181 DAKPEASVWGSRLPFNTVCAEY--------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252 (377)
T ss_dssp C-CCCSCSSCSCCCEEEEEECC--------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS
T ss_pred CCCccccccccccchhhhhhcc--------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC
Confidence 22211 2334455599999999999887 8999999987 889999998
Q ss_pred ce-EEEEecCCCEEEEEe----EEEecC
Q 000177 1683 HG-GGGFHPAGNEVIINS----EVWDLR 1705 (1922)
Q Consensus 1683 ~V-sVaFSPdG~~LASGS----eIWDLr 1705 (1922)
.+ +++|+|+|++|++++ .+|+..
T Consensus 253 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp CEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred ceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 88 999999999999998 377765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-21 Score=230.99 Aligned_cols=258 Identities=15% Similarity=0.230 Sum_probs=198.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccC
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNAS 1582 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~ 1582 (1922)
..+|. ..|+|+.| ++++|++|+.||+|++||+.+++...++.+|...|+++ .| ++++|+++ .|++|++||+.
T Consensus 129 ~~~~~-~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETS-KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSC-CCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEE--EC--CSSEEEEEETTSCEEEEESS
T ss_pred ccCCC-CcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEE--EE--CCCEEEEEcCCCeEEEEECC
Confidence 34576 78999887 78999999999999999999999999999999999999 55 77788885 69999999999
Q ss_pred CCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1583 SIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1583 t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
+ ++++.++.+| .++.|+ +.+++++ +.|++|++||+.++....... ...+|...+.++..++++
T Consensus 202 ~--~~~~~~~~~h~~~v~~l~~~--~~~l~s~---s~dg~i~vwd~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~ 268 (435)
T 1p22_A 202 T--GEMLNTLIHHCEAVLHLRFN--NGMMVTC---SKDRSIAVWDMASPTDITLRR------VLVGHRAAVNVVDFDDKY 268 (435)
T ss_dssp S--CCEEEEECCCCSCEEEEECC--TTEEEEE---ETTSCEEEEECSSSSCCEEEE------EECCCSSCEEEEEEETTE
T ss_pred C--CcEEEEEcCCCCcEEEEEEc--CCEEEEe---eCCCcEEEEeCCCCCCceeee------EecCCCCcEEEEEeCCCE
Confidence 8 7888888765 667776 4689998 889999999999887653211 012565555444448889
Q ss_pred Eeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEcc
Q 000177 1659 LLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNA 1725 (1922)
Q Consensus 1659 LaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSP 1725 (1922)
+++++ ++||+++++++.++.+|...+ ++.| ++.+|++|+ ++||+++++++.++.+|.. ++++|
T Consensus 269 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--
T ss_pred EEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--
Confidence 99877 999999999999999999888 7887 468999998 5999999999999999887 67777
Q ss_pred CCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc---------eeeeecc-CCceEEEEEcCCCceEEEEec
Q 000177 1726 RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS---------DIATIPV-DRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1726 dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys---------~IaTidv-kr~I~dLa~SPdds~LAVVe~ 1795 (1922)
++.+|+++..+.. +++||..+.. .+.++.. ...|..++| ++.++++.
T Consensus 345 ~~~~l~sg~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~-- 401 (435)
T 1p22_A 345 DNKRIVSGAYDGK-------------------IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS-- 401 (435)
T ss_dssp CSSEEEEEETTSC-------------------EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC--
T ss_pred cCCEEEEEeCCCc-------------------EEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE--
Confidence 7889999864432 3333322221 3333332 446888888 56666643
Q ss_pred CCCCCccceEEEEEecC
Q 000177 1796 DDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1796 dds~d~dSsVRLyEVGr 1812 (1922)
..++.+++|++..
T Consensus 402 ----s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 402 ----SHDDTILIWDFLN 414 (435)
T ss_dssp ----CSSSEEEEEC---
T ss_pred ----eCCCEEEEEECCC
Confidence 3457899998743
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-21 Score=219.84 Aligned_cols=228 Identities=15% Similarity=0.215 Sum_probs=182.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
......+.+|. +.|++++|+|++++|++|+.||.|++||+.+++.+. +.+|...|+++.|..++++++|+++ .|++|
T Consensus 76 ~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 76 QTIPKAQQMHT-GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp CEEEEEEEECS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred ceeEEEecccc-CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 33447888999 999999999999999999999999999999887665 5679999999944449999988885 59999
Q ss_pred EEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1577 HLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
++||+++ ++++..+..+ ....+.+.+..++++ +.++.+++||++......... .....+...++.+.++
T Consensus 154 ~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 154 KFWDTRS--SNPMMVLQLPERCYCADVIYPMAVVA---TAERGLIVYQLENQPSEFRRI-----ESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEECSSC--SSCSEEEECSSCEEEEEEETTEEEEE---EGGGCEEEEECSSSCEEEEEC-----CCSCSSCEEEEEEEEC
T ss_pred EEEECCC--CcEEEEEecCCCceEEEecCCeeEEE---eCCCcEEEEEeccccchhhhc-----cccccCCCceEEEccc
Confidence 9999998 7788887764 333344445577777 678999999999765443322 1123456666666665
Q ss_pred CCe----Eeecc-----EEEEcCCC---cceeeeccCCC------------ce-EEEEecCCCEEEEEe-----EEEecC
Q 000177 1656 DTM----LLWNG-----ILWDRRNS---VPVHRFDQFTD------------HG-GGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1656 G~l----LaSgg-----rLWDlrtg---k~I~kf~gh~~------------~V-sVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
... +++++ ++||++.. +.+..+.+|.. .+ +++|+|+|++|++++ ++||+.
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 544 66665 99999987 56778888775 46 999999999999998 599999
Q ss_pred CCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1706 KFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1706 TgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+++++.++.+|.. ++++|+|+|.+|++++.++
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 304 ARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp TTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred CCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 9999999998876 8999999999999997654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-20 Score=217.47 Aligned_cols=226 Identities=13% Similarity=0.164 Sum_probs=184.2
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
+.|.....+.++.+..|. .+++++|+|+|++| ++++.|++|++||+.+++.+..+..|. .|.++ +|+|++++|+
T Consensus 15 ~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~--~~spdg~~l~ 89 (391)
T 1l0q_A 15 SVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV--AVSPDGKQVY 89 (391)
T ss_dssp EEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE--EECTTSSEEE
T ss_pred EEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce--EECCCCCEEE
Confidence 334455677788888776 48999999999977 677799999999999999988887665 89999 8999999775
Q ss_pred E-ec-CCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEE-EEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1570 S-SS-SQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLF-AALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1570 S-Ss-DgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~L-aSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
. +. +++|++||+.+ ++.+..+.. ..+++|+|+++++ +++ +.|+.|++||+.+++.+..+. .
T Consensus 90 ~~~~~~~~v~v~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~v~~~d~~~~~~~~~~~--------~ 156 (391)
T 1l0q_A 90 VTNMASSTLSVIDTTS--NTVAGTVKTGKSPLGLALSPDGKKLYVTN---NGDKTVSVINTVTKAVINTVS--------V 156 (391)
T ss_dssp EEETTTTEEEEEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEE---TTTTEEEEEETTTTEEEEEEE--------C
T ss_pred EEECCCCEEEEEECCC--CeEEEEEeCCCCcceEEECCCCCEEEEEe---CCCCEEEEEECCCCcEEEEEe--------c
Confidence 4 54 79999999987 666666654 3789999999977 566 778999999999999888775 2
Q ss_pred CCcceEEEEcCCCCeEe-ecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--------EEEecCCCeE
Q 000177 1644 GHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--------EVWDLRKFRL 1709 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--------eIWDLrTgkl 1709 (1922)
+.....++|+|++++++ +++ ++||+++++.+..+..+....+++|+|+|++|++++ .+||+.+++.
T Consensus 157 ~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 33445699999998874 443 899999998888776554444999999999888775 3999999999
Q ss_pred EEEEcCCCc-eeEEEccCCCEEEEEE
Q 000177 1710 LRSVPSLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1710 L~tl~gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
+..++.+.. .+++|+|+|++|+++.
T Consensus 237 ~~~~~~~~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 237 TARIPVGPDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred EEEEecCCCccEEEEccCCCEEEEEc
Confidence 999987766 7899999999987653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-21 Score=221.21 Aligned_cols=209 Identities=15% Similarity=0.217 Sum_probs=160.2
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEE
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLV 1557 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsL 1557 (1922)
++.++..+.+.+.....+.+.+|.+|. +.|++++|++ ++++|++|+.||+|+|||+.+++ .+.++.+|...|+++
T Consensus 27 ~s~D~~v~iw~~~~~~~~~~~~l~gH~-~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v 105 (297)
T 2pm7_B 27 CSSDKTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSV 105 (297)
T ss_dssp EETTSCEEEEEBCSSCBCCCEEECCCS-SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEE
T ss_pred EeCCCEEEEEecCCCCcEEEEEEcccc-CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEE
Confidence 334444444433223456788999999 9999999986 48999999999999999998874 566788999999999
Q ss_pred EeeecCC--CcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCC-------------CCEEEEeecCCCCC
Q 000177 1558 QSHLSGE--TQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNS-------------GNLFAALPTETSDR 1617 (1922)
Q Consensus 1558 q~afSpD--G~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPD-------------G~~LaSgS~~S~Dg 1617 (1922)
.|+|+ +.+|++ +.|++|++||++.........+.+| ++++|+|+ +++|++| +.|+
T Consensus 106 --~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg---s~D~ 180 (297)
T 2pm7_B 106 --QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG---GADN 180 (297)
T ss_dssp --EECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEE---ETTS
T ss_pred --EeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEE---cCCC
Confidence 78887 788888 5699999999986211123445544 78999997 5789998 8899
Q ss_pred eEEEEECCCCc----eeeeeccccccccCCCCcc--eEEEEcCCC---CeEeecc-----EEEEcCCCcc---eeee--c
Q 000177 1618 GILLYDIQTYQ----LEAKLSDTSVNLTGRGHAY--SQIHFSPSD---TMLLWNG-----ILWDRRNSVP---VHRF--D 1678 (1922)
Q Consensus 1618 tIrIWDlrTgk----~i~tL~d~s~~~~~~gh~~--~vVaFSPdG---~lLaSgg-----rLWDlrtgk~---I~kf--~ 1678 (1922)
+|++||+++++ ...++. +|.. ..++|+|++ .+|++++ ++||++++.. ...+ .
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~---------~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~ 251 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLE---------GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE 251 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEEC---------CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS
T ss_pred cEEEEEEcCCCceEEEEEEec---------CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecc
Confidence 99999998876 334443 4554 459999995 7888877 9999987531 1223 4
Q ss_pred cCCCce-EEEEecCCCEEEEEe-----EEEecC
Q 000177 1679 QFTDHG-GGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1679 gh~~~V-sVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
.|...+ +++|+|+|++|++++ +||+..
T Consensus 252 ~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 252 KFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 566777 999999999999998 599986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-20 Score=216.73 Aligned_cols=254 Identities=14% Similarity=0.159 Sum_probs=204.4
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE-EEe-cCCcEEEeccCCCCCCcceEecc---ce
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL-LSS-SSQDVHLWNASSIAGGPMHSFEG---CK 1596 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL-aSS-sDgtVkLWDl~t~~gk~l~tf~g---h~ 1596 (1922)
.++++++.|+.|++||+.+++.+..+.+|.. +.++ .|+|++++| +++ .|++|++||+.+ ++.+..+.. +.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~--~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGA--VISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGSSPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEE--EECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSSSEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceE--EECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEECCCCcc
Confidence 4688999999999999999999988887754 8899 899999876 455 599999999987 777777654 47
Q ss_pred eEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE-eecc-----EEEEcCC
Q 000177 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML-LWNG-----ILWDRRN 1670 (1922)
Q Consensus 1597 sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL-aSgg-----rLWDlrt 1670 (1922)
+++|+|++++++.++ ..++.|++||+.+++.+..+. .+.....++|+|+++++ ++++ ++||+.+
T Consensus 78 ~~~~spdg~~l~~~~--~~~~~v~v~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTN--MASSTLSVIDTTSNTVAGTVK--------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEE--------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ceEECCCCCEEEEEE--CCCCEEEEEECCCCeEEEEEe--------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 899999999876551 567999999999999888775 22334559999999977 4544 9999999
Q ss_pred CcceeeeccCCCceEEEEecCCCEEE-EEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhh
Q 000177 1671 SVPVHRFDQFTDHGGGGFHPAGNEVI-INS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMS 1743 (1922)
Q Consensus 1671 gk~I~kf~gh~~~VsVaFSPdG~~LA-SGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s 1743 (1922)
++.+..+..+....+++|+|+|++|+ +++ .+||+++++.+..+..+.. .+++|+|+|++|+++....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~------ 221 (391)
T 1l0q_A 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK------ 221 (391)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS------
T ss_pred CcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCc------
Confidence 99998888776666999999999885 444 5999999999888875544 7999999999999885211
Q ss_pred hhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1744 AVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1744 ~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
....+++||..+...+..+.....+..++|+|++.++.+... .+..+++|++.
T Consensus 222 ----------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~-----~d~~v~v~d~~ 274 (391)
T 1l0q_A 222 ----------YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALS-----FXNTVSVIDTA 274 (391)
T ss_dssp ----------SCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET-----TTTEEEEEETT
T ss_pred ----------CCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcC-----CCCEEEEEECC
Confidence 234577888888888888888778999999999998866532 23678899864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=249.36 Aligned_cols=206 Identities=11% Similarity=0.023 Sum_probs=154.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCce----eeeccCCCCeeEEEeeecCC------CcEEEE-ecCCcEEEeccCCCCC-
Q 000177 1519 GDSSHIAVGSHTKELKIFDSNSSSPL----ESCTSHQAPVTLVQSHLSGE------TQLLLS-SSSQDVHLWNASSIAG- 1586 (1922)
Q Consensus 1519 PDG~lLASGS~DGtIkIWDl~tgk~l----~tL~gHss~VtsLq~afSpD------G~lLaS-SsDgtVkLWDl~t~~g- 1586 (1922)
|+++.|++|+.|++|+|||+.+++.. .++.+|.+.|++| +|+|+ +.+|++ +.|++|+|||+.....
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v--~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL--KWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE--EECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE--EECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 44445556778899999999887653 3567788999999 77875 578888 5699999999976211
Q ss_pred --------CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeeccccccccCCCCcceE--E-
Q 000177 1587 --------GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQ--I- 1650 (1922)
Q Consensus 1587 --------k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~v--V- 1650 (1922)
.+..++.+| ++++|+++ ..|++| +.||+|++||++++.. ...+. +|...+ +
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasg---s~DgtV~lWD~~~~~~~~~~~~---------~H~~~V~sv~ 315 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCG---FKNGFVAEFDLTDPEVPSFYDQ---------VHDSYILSVS 315 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEE---ETTSEEEEEETTBCSSCSEEEE---------CSSSCEEEEE
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEE---eCCCEEEEEECCCCCCceEEee---------cccccEEEEE
Confidence 123456543 78999986 478998 8899999999998743 33343 455444 5
Q ss_pred -EEcCCC-CeEeecc-----EEEEcCCCcceeeeccCCC--ce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1651 -HFSPSD-TMLLWNG-----ILWDRRNSVPVHRFDQFTD--HG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1651 -aFSPdG-~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
.|+|++ ++|++++ +|||+++++++.++.+|.. .+ +++|+|+++.+++++ ++||++++.++.++.+
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 578888 8899888 9999999988888877754 35 899999999999887 6999999998888988
Q ss_pred CCc--eeEEEccCCCEEEEEEccCch
Q 000177 1716 LDQ--TTITFNARGDVIYAILRRNLE 1739 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs~~d~~ 1739 (1922)
|.. ++|+|||+|++|++++.+...
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEE
Confidence 876 899999999999999655433
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-21 Score=229.58 Aligned_cols=219 Identities=18% Similarity=0.333 Sum_probs=177.5
Q ss_pred EecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CCceeeeccCCCCeeEEEeeecCCCc-EEEE
Q 000177 1503 TCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNS----------SSPLESCTSHQAPVTLVQSHLSGETQ-LLLS 1570 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~t----------gk~l~tL~gHss~VtsLq~afSpDG~-lLaS 1570 (1922)
.+.+|. +.|++++|+|+ +.+|++|+.||.|+|||+.+ .+.+.++.+|...|++| .|+|++. +|++
T Consensus 123 ~~~~h~-~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~~~~~~~l~s 199 (430)
T 2xyi_A 123 IKINHE-GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL--SWNPNLNGYLLS 199 (430)
T ss_dssp EEEEES-SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCE--EECTTSTTEEEE
T ss_pred EEEcCC-CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEE--EeCCCCCCeEEE
Confidence 345788 99999999997 78999999999999999976 57788899999999999 8899988 8888
Q ss_pred e-cCCcEEEeccCCCCC-----CcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCC---ceeeeeccc
Q 000177 1571 S-SSQDVHLWNASSIAG-----GPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTY---QLEAKLSDT 1636 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~g-----k~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTg---k~i~tL~d~ 1636 (1922)
+ .|++|++||+..... .+...+.+| ++++|+| ++.+|+++ +.|+.|++||++++ +.+..+.
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~---~~dg~i~i~d~~~~~~~~~~~~~~-- 274 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV---ADDQKLMIWDTRNNNTSKPSHTVD-- 274 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE---ETTSEEEEEETTCSCSSSCSEEEE--
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE---eCCCeEEEEECCCCCCCcceeEee--
Confidence 5 599999999986211 013444443 7899999 67888888 88999999999987 3444443
Q ss_pred cccccCCCCcceEEEEcCCCC-eEeecc-----EEEEcCC-CcceeeeccCCCce-EEEEecCCC-EEEEEe-----EEE
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDT-MLLWNG-----ILWDRRN-SVPVHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVW 1702 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~-lLaSgg-----rLWDlrt-gk~I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIW 1702 (1922)
.+......++|+|+++ ++++++ ++||+++ ++++..+..|...+ ++.|+|++. +|++++ .||
T Consensus 275 -----~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 275 -----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp -----CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred -----cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 1334456699999998 566665 9999998 56899999999888 999999995 577777 599
Q ss_pred ecCC--------------CeEEEEEcCCCc--eeEEEccCCC-EEEEEE
Q 000177 1703 DLRK--------------FRLLRSVPSLDQ--TTITFNARGD-VIYAIL 1734 (1922)
Q Consensus 1703 DLrT--------------gklL~tl~gH~~--~sVaFSPdG~-~LaSgs 1734 (1922)
|+.+ .+++..+.+|.. ++++|+|++. +|+++.
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 9987 367788888875 8999999999 777774
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=246.30 Aligned_cols=126 Identities=9% Similarity=0.094 Sum_probs=103.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-----------eeeccCCCCeeEEEeeecC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-----------ESCTSHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-----------~tL~gHss~VtsLq~afSp 1563 (1922)
....+.+.++. |. +.|++++|+|++++|++|+.||+|++||+.++++. ..+.+|.++|++| +|+|
T Consensus 86 ~~~~~~~~~~~-~~-~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl--~~sp 161 (902)
T 2oaj_A 86 LYSQKVLTTVF-VP-GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI--QWNP 161 (902)
T ss_dssp TTTCSEEEEEE-CS-SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE--EEET
T ss_pred CCCCcEEEEEc-CC-CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE--EEcc
Confidence 34455666675 66 78999999999999999999999999999988753 3457899999999 8899
Q ss_pred C-CcEEEE-ecCCcEEEeccCCCCCCcceEecc----------------------ceeEEEcCCCCEEEEeecCCCCCeE
Q 000177 1564 E-TQLLLS-SSSQDVHLWNASSIAGGPMHSFEG----------------------CKAARFSNSGNLFAALPTETSDRGI 1619 (1922)
Q Consensus 1564 D-G~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g----------------------h~sVaFSPDG~~LaSgS~~S~DgtI 1619 (1922)
+ +.+|++ +.|++| |||+++ ++++..+.. +++++|+|+|++|+++ +.|++|
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg---s~Dg~i 235 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVE--NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI---HEDNSL 235 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTT--TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE---ETTCCE
T ss_pred CCCCEEEEEeCCCcE-EEECCC--CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE---ECCCeE
Confidence 6 356666 469999 999987 666666542 4789999999999999 889999
Q ss_pred EEEECCCCcee
Q 000177 1620 LLYDIQTYQLE 1630 (1922)
Q Consensus 1620 rIWDlrTgk~i 1630 (1922)
++||+++++++
T Consensus 236 ~lWd~~~g~~~ 246 (902)
T 2oaj_A 236 VFWDANSGHMI 246 (902)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcEE
Confidence 99999877654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=225.39 Aligned_cols=216 Identities=17% Similarity=0.316 Sum_probs=181.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS- 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS- 1570 (1922)
.|.....+.+.++.+|. +.|++++| ++++|++|+.||+|++||+.+++.+.++.+|...|.++ .|++ .++++
T Consensus 157 iwd~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l--~~~~--~~l~s~ 229 (435)
T 1p22_A 157 IWDKNTLECKRILTGHT-GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL--RFNN--GMMVTC 229 (435)
T ss_dssp EEESSSCCEEEEECCCS-SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE--ECCT--TEEEEE
T ss_pred EEeCCCCeEEEEEcCCC-CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE--EEcC--CEEEEe
Confidence 34456778889999999 99999999 78999999999999999999999999999999999999 6653 46666
Q ss_pred ecCCcEEEeccCCCCCCcc---eEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1571 SSSQDVHLWNASSIAGGPM---HSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l---~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+.|++|++||+.+ +..+ ..+.+| .++.| ++++++++ +.|++|++||+++++.+.++.
T Consensus 230 s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~---~~dg~i~vwd~~~~~~~~~~~--------- 293 (435)
T 1p22_A 230 SKDRSIAVWDMAS--PTDITLRRVLVGHRAAVNVVDF--DDKYIVSA---SGDRTIKVWNTSTCEFVRTLN--------- 293 (435)
T ss_dssp ETTSCEEEEECSS--SSCCEEEEEECCCSSCEEEEEE--ETTEEEEE---ETTSEEEEEETTTCCEEEEEE---------
T ss_pred eCCCcEEEEeCCC--CCCceeeeEecCCCCcEEEEEe--CCCEEEEE---eCCCeEEEEECCcCcEEEEEc---------
Confidence 5699999999987 4444 445554 56777 78999999 889999999999999988886
Q ss_pred CCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe----
Q 000177 1644 GHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR---- 1708 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk---- 1708 (1922)
+|...+.++..+++++++++ ++||+++++++..+.+|...+ ++.| ++.+|++|+ ++||+++++
T Consensus 294 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 371 (435)
T 1p22_A 294 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA 371 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence 55555544444678888877 999999999999999999888 7888 789999998 599998766
Q ss_pred -----EEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1709 -----LLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1709 -----lL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
++.++.+|.. ++++| ++.+|++++
T Consensus 372 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 372 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp CTTTTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred cccchheeeccCCCCCeEEEEe--CCCEEEEEe
Confidence 8899998877 78888 778888874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=219.02 Aligned_cols=281 Identities=11% Similarity=0.070 Sum_probs=186.8
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE-E-ecCCc
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL-S-SSSQD 1575 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa-S-SsDgt 1575 (1922)
.+++.++.+|. +.|+|++|+|||++|++|+.++ ++|||+.+++....... ..+..+ .+.+++++++ + +.|++
T Consensus 9 ~~~~~~~~~h~-~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 9 RNPIVPENHVS-NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKV--RMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ----------C-CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEE--EECTTSSEEEEECSSTTE
T ss_pred cCCccccccCC-CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEE--EEcCCCCEEEEEECCccE
Confidence 44566678899 9999999999999999999876 78999987766554432 357777 5566777664 3 45899
Q ss_pred EEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|+|||+.+ ++++..+.. +.++.|+++. ++++ .|+.|++||+.++ +.+.++. . ....++
T Consensus 83 v~iWd~~~--~~~~~~~~~~~~v~~v~~~~~~--~~~~----~~~~i~i~d~~~~~~~~~~~~---------~-~~~~~~ 144 (355)
T 3vu4_A 83 VHIWDDVK--KQDVSRIKVDAPVKDLFLSREF--IVVS----YGDVISVFKFGNPWKRITDDI---------R-FGGVCE 144 (355)
T ss_dssp EEEEETTT--TEEEEEEECSSCEEEEEECSSE--EEEE----ETTEEEEEESSTTCCBSSCCE---------E-EEEEEE
T ss_pred EEEEECCC--CcEEEEEECCCceEEEEEcCCE--EEEE----EcCEEEEEECCCCceeeEEec---------c-CCceEE
Confidence 99999988 777776653 4778888764 4443 3678999999988 7766664 1 344577
Q ss_pred EcCCCCeEeec--c-----EEEEcCCCc---------------c-eeeeccCCCce-EEEEecCCCEEEEEe------EE
Q 000177 1652 FSPSDTMLLWN--G-----ILWDRRNSV---------------P-VHRFDQFTDHG-GGGFHPAGNEVIINS------EV 1701 (1922)
Q Consensus 1652 FSPdG~lLaSg--g-----rLWDlrtgk---------------~-I~kf~gh~~~V-sVaFSPdG~~LASGS------eI 1701 (1922)
+++ .+++.. + ++||+++++ + +..+.+|...+ +++|+|+|++|++++ +|
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 888 556543 3 999999875 2 78899999999 999999999999998 59
Q ss_pred EecCCCeEEEEEc-C-CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccc-cccCCcceEEE-EecCCCceeeeecc-
Q 000177 1702 WDLRKFRLLRSVP-S-LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRR-VKHPLFAAFRT-VDAINYSDIATIPV- 1774 (1922)
Q Consensus 1702 WDLrTgklL~tl~-g-H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr-~ksp~~ssFrt-~Da~dys~IaTidv- 1774 (1922)
||+++++++.++. + |.. ++++|+|+|++|++++.+....+|....... ..+.+...+.. +-...+ .+..+..
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 301 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW-SLCNFKLS 301 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS-CSEEEECC
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc-ceeEEEec
Confidence 9999999999998 5 665 8999999999999997554433332110000 00001000000 000001 0111111
Q ss_pred ---CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1775 ---DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1775 ---kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
......++|+++|.++++.. .++.+++|++.
T Consensus 302 ~~~~~~~~~~a~~~d~~~l~~~~------~dg~~~~~~~~ 335 (355)
T 3vu4_A 302 VDKHVRGCKIAWISESSLVVVWP------HTRMIETFKVV 335 (355)
T ss_dssp CCTTCCCCEEEESSSSEEEEEET------TTTEEEEEEEE
T ss_pred cCCCCCceEEEEeCCCCEEEEEe------CCCeEEEEEEE
Confidence 22346689999999988763 24678888763
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=211.48 Aligned_cols=240 Identities=16% Similarity=0.169 Sum_probs=177.2
Q ss_pred CCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC---CCcEEEE-ecCCcEEEec
Q 000177 1506 DDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG---ETQLLLS-SSSQDVHLWN 1580 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp---DG~lLaS-SsDgtVkLWD 1580 (1922)
+|. ..|++++|+| ++.+|++|+.||.|++||+.+++....+. |...+.++ .|++ ++.++++ +.|+.|++||
T Consensus 97 ~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 97 VHR-YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSH--HMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CCS-SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE--EECSSCSSCCEEEEEESSSSEEEEE
T ss_pred cCC-CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeee--EeecCCCCCcEEEEEcCCCeEEEEe
Confidence 588 9999999999 78899999999999999999998887776 77889999 5565 4557877 4699999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCc-eeeeeccc------cccc--cCCCCc
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQ-LEAKLSDT------SVNL--TGRGHA 1646 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~------s~~~--~~~gh~ 1646 (1922)
+.+ ++++..+.+| .+++|+|+++ .|+++ +.|+.|++||++++. ++..+... .... ..+...
T Consensus 173 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
T 4a11_B 173 LKS--GSCSHILQGHRQEILAVSWSPRYDYILATA---SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247 (408)
T ss_dssp SSS--SCCCEEECCCCSCEEEEEECSSCTTEEEEE---ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred CCC--cceeeeecCCCCcEEEEEECCCCCcEEEEE---cCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence 998 7778888764 7899999998 47888 889999999999876 34433210 0011 122334
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC-----ce--EEEEecCCCEEEEEe----EEEecCCCeEE
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD-----HG--GGGFHPAGNEVIINS----EVWDLRKFRLL 1710 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~-----~V--sVaFSPdG~~LASGS----eIWDLrTgklL 1710 (1922)
+..++|+|++++|++++ ++||+++++.+..+..+.. .. ...+.+.+.+++++. .+||+.+++++
T Consensus 248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 45599999999999877 9999999887665544321 12 233334445555544 59999999999
Q ss_pred EEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec
Q 000177 1711 RSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP 1773 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid 1773 (1922)
.++.+|.. ++++|+|+|.+|+++.. +..+++|+..+++.+...+
T Consensus 328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-------------------dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 328 TMLKGHYKTVDCCVFQSNFQELYSGSR-------------------DCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEET-------------------TSCEEEEEECC--------
T ss_pred eeeccCCCeEEEEEEcCCCCEEEEECC-------------------CCeEEEEeCCCCCccCCCC
Confidence 99999876 89999999999999853 2346777777766665443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=252.32 Aligned_cols=225 Identities=15% Similarity=0.236 Sum_probs=177.1
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceeeeccCCCCeeEEEeeecCC--CcEEEEe-cCCc
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN--SSSPLESCTSHQAPVTLVQSHLSGE--TQLLLSS-SSQD 1575 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~--tgk~l~tL~gHss~VtsLq~afSpD--G~lLaSS-sDgt 1575 (1922)
+.++.+|. +.|++++|+|+|++|++|+.||+|+|||+. +++.+.++.+|..+|+++ .|+++ +++|+++ .||+
T Consensus 2 ~~~l~gH~-~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l--~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 2 VVIANAHN-ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp ------CC-CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEE--EECCTTSCSEEEEEETTSC
T ss_pred eeecccCc-ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEE--EecCCCCCCEEEEEeCCCe
Confidence 35678999 999999999999999999999999999997 556778889999999999 77777 8899885 5999
Q ss_pred EEEeccCCCCCC--cceEeccc----eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1576 VHLWNASSIAGG--PMHSFEGC----KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1576 VkLWDl~t~~gk--~l~tf~gh----~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
|++||+.+ ++ .+..+.+| ++++|+|+ +++++++ +.|++|++||++++....... ...+...+
T Consensus 79 I~vwd~~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg---s~dg~I~vwdl~~~~~~~~~~-----~~~~~~~v 148 (753)
T 3jro_A 79 VLIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA---SSDGKVSVVEFKENGTTSPII-----IDAHAIGV 148 (753)
T ss_dssp EEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEECCSSSCCCCEE-----EECCSSCE
T ss_pred EEEEECCC--CcccccccccCCCCCeEEEEECCCCCCCEEEEE---eCCCcEEEEEeecCCCcceeE-----eecCCCce
Confidence 99999987 44 45555544 88999999 9999999 889999999999874433221 01123345
Q ss_pred eEEEEcC-------------CCCeEeecc-----EEEEcCCC----cceeeeccCCCce-EEEEecC---CCEEEEEe--
Q 000177 1648 SQIHFSP-------------SDTMLLWNG-----ILWDRRNS----VPVHRFDQFTDHG-GGGFHPA---GNEVIINS-- 1699 (1922)
Q Consensus 1648 ~vVaFSP-------------dG~lLaSgg-----rLWDlrtg----k~I~kf~gh~~~V-sVaFSPd---G~~LASGS-- 1699 (1922)
..++|+| ++.++++++ ++||++++ .++..+.+|...+ +++|+|+ |.+|++++
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 5599999 588888877 99999987 4567788899988 9999999 89999998
Q ss_pred ---EEEecCCCe-----EEEEEcCCCc--eeEEEccCCCEEEEEEccCc
Q 000177 1700 ---EVWDLRKFR-----LLRSVPSLDQ--TTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1700 ---eIWDLrTgk-----lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
++||++++. .+.....|.. ++++|+|+|.+|+++..+..
T Consensus 229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 599999864 2222223443 79999999999999865443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-20 Score=211.39 Aligned_cols=222 Identities=10% Similarity=0.116 Sum_probs=178.5
Q ss_pred eeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCCceeeecc--CCCCeeEEEeeecCCCcEEEE-ecCC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDS-NSSSPLESCTS--HQAPVTLVQSHLSGETQLLLS-SSSQ 1574 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl-~tgk~l~tL~g--Hss~VtsLq~afSpDG~lLaS-SsDg 1574 (1922)
+...+.+|. ..|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|+++ .|+| +.+|++ +.|+
T Consensus 48 ~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l--~~~~-~~~l~s~~~d~ 122 (342)
T 1yfq_A 48 DLLQSLRYK-HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRI--CKYG-DDKLIAASWDG 122 (342)
T ss_dssp EEEEEEECS-SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEE--EEET-TTEEEEEETTS
T ss_pred cceeeeecC-CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEE--EeCC-CCEEEEEcCCC
Confidence 355566898 9999999999999 9999999999999999 77654 77888 99999999 7888 888887 5699
Q ss_pred cEEEeccCCCC-------CCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCC
Q 000177 1575 DVHLWNASSIA-------GGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1575 tVkLWDl~t~~-------gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~ 1643 (1922)
.|++||+++.. ++++.++. .+.+++|+|++ ++++ +.|+.|++||+++ +....... ...+
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~---~~d~~i~i~d~~~~~~~~~~~~-----~~~~ 192 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVG---MNNSQVQWFRLPLCEDDNGTIE-----ESGL 192 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEE---ESTTEEEEEESSCCTTCCCEEE-----ECSC
T ss_pred eEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEE---eCCCeEEEEECCccccccceee-----ecCC
Confidence 99999987400 22333333 24889999987 7777 7889999999998 55422111 0112
Q ss_pred CCcceEEEEcC-CCCeEeecc-----EEEEcCCC------cceeeeccCCC---------ce-EEEEecCCCEEEEEe--
Q 000177 1644 GHAYSQIHFSP-SDTMLLWNG-----ILWDRRNS------VPVHRFDQFTD---------HG-GGGFHPAGNEVIINS-- 1699 (1922)
Q Consensus 1644 gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtg------k~I~kf~gh~~---------~V-sVaFSPdG~~LASGS-- 1699 (1922)
......++|+| +++++++++ ++||+... +++..+..|.. .+ +++|+|++++|++++
T Consensus 193 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 34556699999 999999877 89999987 78888988865 67 999999999999998
Q ss_pred ---EEEecCCCeEEEEEcCC-Cc--eeEEEccCCCEEEEEEccCc
Q 000177 1700 ---EVWDLRKFRLLRSVPSL-DQ--TTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1700 ---eIWDLrTgklL~tl~gH-~~--~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
.+||+.+++++.++.+| .. ++++ |+|.+|++++.++.
T Consensus 273 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 59999999999999988 66 5666 99999999976553
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-20 Score=209.87 Aligned_cols=201 Identities=13% Similarity=0.180 Sum_probs=164.2
Q ss_pred eeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------CceeeeccCCCCeeEEEeeecCC--C
Q 000177 1499 RPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSS---------SPLESCTSHQAPVTLVQSHLSGE--T 1565 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tg---------k~l~tL~gHss~VtsLq~afSpD--G 1565 (1922)
+...++.+|. ..|++++|+| ++++|++|+.||+|+|||+.++ +.+..+.+|...|+++ .|+|+ +
T Consensus 48 ~~~~~~~~~~-~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~ 124 (351)
T 3f3f_A 48 ELSDSWRAHD-SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV--KFAPAHLG 124 (351)
T ss_dssp EEEEEEECCS-SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEE--EECCGGGC
T ss_pred eecceeccCC-CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEE--EEcCCCCC
Confidence 5677888999 9999999999 6999999999999999999887 4477889999999999 88998 9
Q ss_pred cEEEE-ecCCcEEEeccCCCCCCcceEec-----------------cceeEEEcCC---CCEEEEeecCCCCCeEEEEEC
Q 000177 1566 QLLLS-SSSQDVHLWNASSIAGGPMHSFE-----------------GCKAARFSNS---GNLFAALPTETSDRGILLYDI 1624 (1922)
Q Consensus 1566 ~lLaS-SsDgtVkLWDl~t~~gk~l~tf~-----------------gh~sVaFSPD---G~~LaSgS~~S~DgtIrIWDl 1624 (1922)
.+|++ +.|++|++||+.+ ++.+..+. .+.++.|+|+ +.+++++ +.|+.+.+|+.
T Consensus 125 ~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~~~~~~~~ 199 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALE--PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS---ALEQAIIYQRG 199 (351)
T ss_dssp SEEEEEETTCEEEEEECSS--TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE---ETTEEEEEEEC
T ss_pred cEEEEecCCCcEEEecCCC--hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe---cCCCcEEEEcc
Confidence 98888 5699999999987 54443322 2378999997 8999998 78899988888
Q ss_pred CCCce--eeeeccccccccCCCCcceEEEEcCCC----CeEeecc-----EEEEcCCC----------------------
Q 000177 1625 QTYQL--EAKLSDTSVNLTGRGHAYSQIHFSPSD----TMLLWNG-----ILWDRRNS---------------------- 1671 (1922)
Q Consensus 1625 rTgk~--i~tL~d~s~~~~~~gh~~~vVaFSPdG----~lLaSgg-----rLWDlrtg---------------------- 1671 (1922)
..++. +..+. .+...+..++|+|++ ++|++++ ++||++++
T Consensus 200 ~~~~~~~~~~~~-------~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
T 3f3f_A 200 KDGKLHVAAKLP-------GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 272 (351)
T ss_dssp TTSCEEEEEECC-------CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred CCCceeeeeecC-------CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence 87765 33332 123344559999998 7888877 99999875
Q ss_pred ------------------------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1672 ------------------------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1672 ------------------------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
+++..+.+|...+ +++|+|+|++|++++ +|||+.+++.+..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp ------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 5677888898888 999999999999999 599999876555443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.4e-21 Score=220.17 Aligned_cols=190 Identities=15% Similarity=0.219 Sum_probs=151.7
Q ss_pred eeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCC--CcEEEEe-
Q 000177 1499 RPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGE--TQLLLSS- 1571 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpD--G~lLaSS- 1571 (1922)
..+.+|++|. +.|++++|++ ++++|++|+.|++|+|||+.+++ ...++.+|...|+++ +|+|+ +.+|+++
T Consensus 48 ~~~~~l~gH~-~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~g~~lasgs 124 (316)
T 3bg1_A 48 ILIADLRGHE-GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSV--CWAPHDYGLILACGS 124 (316)
T ss_dssp EEEEEEECCS-SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEE--EECCTTTCSCEEEEC
T ss_pred EEEEEEcCCC-ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEE--EECCCCCCcEEEEEc
Confidence 4567899999 9999999986 48999999999999999998874 566788999999999 78887 7888885
Q ss_pred cCCcEEEeccCCCCCCc---ceEecc----ceeEEEcCC-----------------CCEEEEeecCCCCCeEEEEECCCC
Q 000177 1572 SSQDVHLWNASSIAGGP---MHSFEG----CKAARFSNS-----------------GNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~---l~tf~g----h~sVaFSPD-----------------G~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
.|++|++||+.. ... ...+.+ +.++.|+|+ +++|+++ +.|++|++||++++
T Consensus 125 ~D~~i~lwd~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg---s~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 125 SDGAISLLTYTG--EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG---GCDNLIKLWKEEED 199 (316)
T ss_dssp SSSCEEEEEECS--SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC---BTTSBCCEEEECTT
T ss_pred CCCCEEEEecCC--CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe---cCCCeEEEEEeCCC
Confidence 599999999986 321 233334 378899997 4688998 88999999999765
Q ss_pred c---eeeeeccccccccCCCCcc--eEEEEcCCC----CeEeecc-----EEEEcCCC---c-ceeeeccCCCce-EEEE
Q 000177 1628 Q---LEAKLSDTSVNLTGRGHAY--SQIHFSPSD----TMLLWNG-----ILWDRRNS---V-PVHRFDQFTDHG-GGGF 1688 (1922)
Q Consensus 1628 k---~i~tL~d~s~~~~~~gh~~--~vVaFSPdG----~lLaSgg-----rLWDlrtg---k-~I~kf~gh~~~V-sVaF 1688 (1922)
. ++.++. +|.. ..++|+|++ ++|++++ ++||+.+. . ....+..|...+ +++|
T Consensus 200 ~~~~~~~~l~---------~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~ 270 (316)
T 3bg1_A 200 GQWKEEQKLE---------AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW 270 (316)
T ss_dssp SCEEEEECCB---------CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE
T ss_pred Cccceeeecc---------cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE
Confidence 2 344443 5554 459999987 7888877 99999863 1 234456777788 9999
Q ss_pred ecCCCEEEEEe-----EEEecC
Q 000177 1689 HPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1689 SPdG~~LASGS-----eIWDLr 1705 (1922)
+|+|++|++++ +||+..
T Consensus 271 sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 271 SITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999998 599976
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=225.54 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=167.2
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCCceeeecc------------CCCCeeEEEeeecCCCcEEEE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN---SSSPLESCTS------------HQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~---tgk~l~tL~g------------Hss~VtsLq~afSpDG~lLaS 1570 (1922)
+|. +.|++++|+|++++|++|+.||+|+|||+. +++....+.+ |...+.++.+.+++++.+|++
T Consensus 109 ~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 109 DCS-STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp ECS-SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred cCC-CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 488 999999999999999999999999999994 5555443322 566777776668889999998
Q ss_pred e-cCCcEEEeccCCCCCCcceEecc--c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1571 S-SSQDVHLWNASSIAGGPMHSFEG--C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~l~tf~g--h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+ .|++|++||+++ ++++.++.+ | ++++|+|++++|+++ +.|++|++||+++++++.++. .
T Consensus 188 ~~~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~--------~ 254 (437)
T 3gre_A 188 LTNLSRVIIFDIRT--LERLQIIENSPRHGAVSSICIDEECCVLILG---TTRGIIDIWDIRFNVLIRSWS--------F 254 (437)
T ss_dssp EETTSEEEEEETTT--CCEEEEEECCGGGCCEEEEEECTTSCEEEEE---ETTSCEEEEETTTTEEEEEEB--------C
T ss_pred EeCCCeEEEEeCCC--CeeeEEEccCCCCCceEEEEECCCCCEEEEE---cCCCeEEEEEcCCccEEEEEe--------c
Confidence 5 599999999998 788888865 3 789999999999999 889999999999999988774 1
Q ss_pred CCc--ceEEEEc----CCCCeEeecc-----EEEEcCCCcceeeeccCC--------------------------Cce-E
Q 000177 1644 GHA--YSQIHFS----PSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--------------------------DHG-G 1685 (1922)
Q Consensus 1644 gh~--~~vVaFS----PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--------------------------~~V-s 1685 (1922)
+|. +..++|+ |++.+|++++ ++||+++++++..+.+|. ..+ +
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 233 3447554 5678999887 999999999888776542 334 7
Q ss_pred EEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-----eeEEEccCCCEEEEE
Q 000177 1686 GGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-----TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1686 VaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-----~sVaFSPdG~~LaSg 1733 (1922)
++|+ ++++|++++ ++||+.+++.+..+.+|.. ....++++..+++..
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred EEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe
Confidence 8898 778999998 5999999998888887643 344455554444433
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=219.73 Aligned_cols=205 Identities=12% Similarity=0.047 Sum_probs=162.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCC-------CCCc
Q 000177 1516 TFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSI-------AGGP 1588 (1922)
Q Consensus 1516 aFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~-------~gk~ 1588 (1922)
.+.+++.+|++|+.||+|++||+.+++.+.++. ...|.++ .|+|+ ++.++.|++|++|+.... .++.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~--~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTG--GEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTT--CCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceee--eeCCc--eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 345688899999999999999999999888886 5678888 77887 444466999999976520 1333
Q ss_pred ceEec-----cceeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEee
Q 000177 1589 MHSFE-----GCKAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1589 l~tf~-----gh~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+..+. .+.+++|+| ++++|+++ +.|++|++||+++++++..+. ..+......++|+|+|.+|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---s~dg~i~~wd~~~~~~~~~~~------~~~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWA---DNRGTIGFQSYEDDSQYIVHS------AKSDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEE---ETTCCEEEEESSSSCEEEEEC------CCSSCCCCEEEECTTSCEEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEE---eCCCcEEEEECCCCcEEEEEe------cCCCCceEEEEECCCCCEEEE
Confidence 44443 258899999 99999999 889999999999999866553 112234667999999999998
Q ss_pred cc-----EEEEcCCCcce-eeecc-CCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcC---CCc----eeEE
Q 000177 1662 NG-----ILWDRRNSVPV-HRFDQ-FTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPS---LDQ----TTIT 1722 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I-~kf~g-h~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~g---H~~----~sVa 1722 (1922)
++ ++||+++++.+ .+|.. |...+ +++|+|+|.+|++++ ++||+++++.+.++.. |.. .+++
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 76 99999999987 88988 88888 999999999999998 5999999877655543 222 3699
Q ss_pred EccCCCEEEEEEc
Q 000177 1723 FNARGDVIYAILR 1735 (1922)
Q Consensus 1723 FSPdG~~LaSgs~ 1735 (1922)
|+|+|++|+++..
T Consensus 268 ~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 268 IDDSGKNMIAYSN 280 (343)
T ss_dssp ECTTSSEEEEEET
T ss_pred ECCCCCEEEEecC
Confidence 9999999999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=212.67 Aligned_cols=218 Identities=14% Similarity=0.186 Sum_probs=167.4
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEE
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGD--SSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLV 1557 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD--G~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsL 1557 (1922)
++.++....|.+.....+.++++.+|. +.|++++|+++ +++|++|+.||.|+|||+.+++ .+..+.+|...|+++
T Consensus 29 ~~~dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 107 (379)
T 3jrp_A 29 CSSDKTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 107 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred EECCCcEEEEecCCCcceeeeEecCCC-CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEE
Confidence 334444455554333677888999999 99999999987 9999999999999999999887 677888999999999
Q ss_pred EeeecCC--CcEEEE-ecCCcEEEeccCCCCCCcceEecc----ceeEEEcC-------------CCCEEEEeecCCCCC
Q 000177 1558 QSHLSGE--TQLLLS-SSSQDVHLWNASSIAGGPMHSFEG----CKAARFSN-------------SGNLFAALPTETSDR 1617 (1922)
Q Consensus 1558 q~afSpD--G~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSP-------------DG~~LaSgS~~S~Dg 1617 (1922)
.|+|+ +.+|++ +.|++|++||+..........+.+ +.+++|+| ++++|+++ +.|+
T Consensus 108 --~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg 182 (379)
T 3jrp_A 108 --QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG---GADN 182 (379)
T ss_dssp --EECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE---ETTS
T ss_pred --EeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE---eCCC
Confidence 88998 888888 469999999998732233344444 48899999 69999999 8899
Q ss_pred eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC---CCeEeecc-----EEEEcCCCc-----ceeeeccCCCce
Q 000177 1618 GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS---DTMLLWNG-----ILWDRRNSV-----PVHRFDQFTDHG 1684 (1922)
Q Consensus 1618 tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd---G~lLaSgg-----rLWDlrtgk-----~I~kf~gh~~~V 1684 (1922)
.|++||++++.....+. .....+...+..++|+|+ +++|++++ ++||++++. .+.....|...+
T Consensus 183 ~i~i~d~~~~~~~~~~~---~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 259 (379)
T 3jrp_A 183 LVKIWKYNSDAQTYVLE---STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259 (379)
T ss_dssp CEEEEEEETTTTEEEEE---EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred eEEEEEecCCCcceeeE---EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE
Confidence 99999998876432221 000112334455999999 89999877 999999874 222233466677
Q ss_pred -EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1685 -GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1685 -sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
+++|+|+|++|++++ .+|++.+..
T Consensus 260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 260 WRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 999999999999988 599998543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=221.41 Aligned_cols=192 Identities=10% Similarity=0.070 Sum_probs=150.0
Q ss_pred CCCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVG--SHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASG--S~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t 1583 (1922)
.+. ..+.+++|||||++|+++ +.|++|+|||+.+++++..+. |...|++| +|+|||++|++++++.+++|+..+
T Consensus 131 ~~~-~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v--~fspdg~~l~s~s~~~~~~~~~~~ 206 (365)
T 4h5i_A 131 NAD-DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDL--HFSTDGKVVAYITGSSLEVISTVT 206 (365)
T ss_dssp CTT-CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEE--EECTTSSEEEEECSSCEEEEETTT
T ss_pred Ccc-cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEE--EEccCCceEEeccceeEEEEEecc
Confidence 344 679999999999987654 478999999999999988886 77889999 899999999998888888888776
Q ss_pred CCCCcceE--ecc----ceeEEEcCCCCEEEEeecCCC-CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1584 IAGGPMHS--FEG----CKAARFSNSGNLFAALPTETS-DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1584 ~~gk~l~t--f~g----h~sVaFSPDG~~LaSgS~~S~-DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+..+.. ..+ +++++|+|+++++++++.++. ..++++||+..+....... .....+...+..++|+|+|
T Consensus 207 --~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 207 --GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS---KQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp --CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE---EEEESSCSCEEEEEECTTS
T ss_pred --CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee---eeecCCCCCeEeEEECCCC
Confidence 554432 222 378999999999999843221 1268899988765422111 0001122334559999999
Q ss_pred CeEeecc-----EEEEcCCCcceeee-ccCCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRF-DQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf-~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
++|++++ +|||++++++++++ .+|...| +++|+|||++|+++| +|||+..
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999887 99999999999886 6899999 999999999999999 6999964
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=239.91 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=159.1
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCC
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASS 1583 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t 1583 (1922)
.+|. +.|++++|+|++++||+|+.||+|+||+..+.+....+ .|..+|++| .|+| +++|++ +.|++|+|||+.+
T Consensus 14 ~gh~-~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l--~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 14 YGMS-SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEM--RFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EECS-SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEE--EEET-TTEEEEEETTCEEEEEETTT
T ss_pred cCCC-CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEE--EEcC-CCEEEEEECcCeEEEEECCC
Confidence 4798 99999999999999999999999999999877665554 488899999 8899 787777 5699999999998
Q ss_pred CCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc-----ccccCCCCcceEEEEcCC
Q 000177 1584 IAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS-----VNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1584 ~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s-----~~~~~~gh~~~vVaFSPd 1655 (1922)
++++.++.. +++++|+|++++|++| +.|++|++||++++++. .+..+. ....++...+..++|+|+
T Consensus 89 --~~~~~~~~~~~~V~~v~~sp~g~~l~sg---s~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 89 --QKVLTTVFVPGKITSIDTDASLDWMLIG---LQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp --CSEEEEEECSSCEEEEECCTTCSEEEEE---ETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred --CcEEEEEcCCCCEEEEEECCCCCEEEEE---cCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccC
Confidence 777777643 4899999999999999 88999999999988763 221000 011123334556999997
Q ss_pred C-CeEeecc----EEEEcCCCcceeeeccC------------------CCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1656 D-TMLLWNG----ILWDRRNSVPVHRFDQF------------------TDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1656 G-~lLaSgg----rLWDlrtgk~I~kf~gh------------------~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
+ .++++++ .+||++++++++.|..| ...+ +++|+|+|.+|++++ ++||+++
T Consensus 163 ~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 163 DIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 5 5677665 89999999998888766 3556 999999999999999 5999999
Q ss_pred CeEEEE
Q 000177 1707 FRLLRS 1712 (1922)
Q Consensus 1707 gklL~t 1712 (1922)
++++..
T Consensus 243 g~~~~~ 248 (902)
T 2oaj_A 243 GHMIMA 248 (902)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 988764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-20 Score=222.96 Aligned_cols=213 Identities=14% Similarity=0.120 Sum_probs=173.4
Q ss_pred EecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCCceeeec--cCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1503 TCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSN--SSSPLESCT--SHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~--tgk~l~tL~--gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
...+|. +.|++++|+|+|++| ++|+.||+|+|||+. +++.+..+. .|...|+++ .|+|++++|+++ .|+.|
T Consensus 97 ~~~~~~-~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 97 GAPPIY-SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI--SIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp ---CCC-CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE--EECTTSSEEEEEETTSEE
T ss_pred CCCccC-CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE--EEcCCCCEEEEEeCCCcE
Confidence 345788 899999999999996 999999999999999 888888886 677899999 899999999985 59999
Q ss_pred EEeccCCCCCCcc----eEecc----ceeEEEcCC---CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1577 HLWNASSIAGGPM----HSFEG----CKAARFSNS---GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1577 kLWDl~t~~gk~l----~tf~g----h~sVaFSPD---G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
++|++.+ +... ..+.+ +++++|+|+ +++|+++ +.|++|++||+++++++..+. .+|
T Consensus 174 ~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~---~~d~~i~vwd~~~~~~~~~~~--------~~h 240 (450)
T 2vdu_B 174 YSIDINS--IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS---DRDEHIKISHYPQCFIVDKWL--------FGH 240 (450)
T ss_dssp EEEETTS--CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE---ETTSCEEEEEESCTTCEEEEC--------CCC
T ss_pred EEEecCC--cccccccceeeecccCceEEEEEcCCCCCCcEEEEE---cCCCcEEEEECCCCceeeeee--------cCC
Confidence 9999987 3332 24444 488999999 9999999 789999999999998877743 244
Q ss_pred c--ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccC-------------------------CCce-EEEEecCC
Q 000177 1646 A--YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF-------------------------TDHG-GGGFHPAG 1692 (1922)
Q Consensus 1646 ~--~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh-------------------------~~~V-sVaFSPdG 1692 (1922)
. +..++|+ ++++|++++ ++||+++++++..+..+ ...+ ++.|+|++
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 4 4559999 999999887 99999999988887632 2344 89999999
Q ss_pred CEEEEEe------EEEec--CCC---eEEEEEcCCCc-eeEEEccCCCEEEEE
Q 000177 1693 NEVIINS------EVWDL--RKF---RLLRSVPSLDQ-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1693 ~~LASGS------eIWDL--rTg---klL~tl~gH~~-~sVaFSPdG~~LaSg 1733 (1922)
++|++++ .||++ .++ +.+.++..+.. ++++|+|++ ++++.
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTL 371 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEE
T ss_pred CEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEE
Confidence 9999887 49999 555 77888887744 899999954 44444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-19 Score=210.86 Aligned_cols=219 Identities=9% Similarity=0.089 Sum_probs=180.8
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE-Ee-cCCcEEEec
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL-SS-SSQDVHLWN 1580 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa-SS-sDgtVkLWD 1580 (1922)
.+.+|. +.|++++|+++++++++++.|+.|++||+.+++.+.++..|...+.++ +|+|++++++ ++ .|+.|++||
T Consensus 164 ~~~~~~-~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 164 KYKKKL-GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL--LYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp HHHTTC-CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE--EEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccC-CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE--EEcCCCCEEEEEecCCCcEEEEE
Confidence 456898 899999999999999999999999999999999999999999999999 8899998775 45 489999999
Q ss_pred cCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCC-----CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1581 ASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTET-----SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S-----~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
+.+ ++.+..+.. ..+++|+|+++++++++.+. .|+.|++||+.+++.+..+. +......++|
T Consensus 241 ~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--------~~~~~~~~~~ 310 (433)
T 3bws_A 241 RKT--KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--------PPGNKRHIVS 310 (433)
T ss_dssp TTT--TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--------EEECEEEEEE
T ss_pred CCC--CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--------CCCCcceEEE
Confidence 987 666666654 37899999999998884322 58899999999998877664 1223345999
Q ss_pred cCCCCeEe-ecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--------------------EEEecCC
Q 000177 1653 SPSDTMLL-WNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--------------------EVWDLRK 1706 (1922)
Q Consensus 1653 SPdG~lLa-Sgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--------------------eIWDLrT 1706 (1922)
+|+++.++ +++ ++||+.+++.+..+.......+++|+|+|++|++++ .+||+.+
T Consensus 311 ~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 311 GNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp CSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 99997654 433 899999999888886443334999999999887754 3899999
Q ss_pred CeEEEEEcCCCc-eeEEEccCCCEEEEEE
Q 000177 1707 FRLLRSVPSLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1707 gklL~tl~gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
++.+..+..+.. ..++|+|+|++|+++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 391 DTVKEFWEAGNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp TEEEEEEECSSSEEEEEECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCceEEEcCCCCEEEEEE
Confidence 999999887554 8999999999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=213.75 Aligned_cols=240 Identities=16% Similarity=0.245 Sum_probs=172.2
Q ss_pred eeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCC--------CCCCcceEeccc----eeEEEcCCCC-EEEE
Q 000177 1545 ESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASS--------IAGGPMHSFEGC----KAARFSNSGN-LFAA 1609 (1922)
Q Consensus 1545 ~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t--------~~gk~l~tf~gh----~sVaFSPDG~-~LaS 1609 (1922)
.....|.+.|+++ .|+|+ +.+|+++ .|+.|++||+.. ....++.++.+| .+++|+|++. +|++
T Consensus 122 ~~~~~h~~~v~~l--~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRA--RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEE--EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEcCCCcEEEE--EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 3457899999999 88997 6788885 599999999975 113556677665 7899999988 9999
Q ss_pred eecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC-CCCeEeecc-----EEEEcCCC---cceeeeccC
Q 000177 1610 LPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWNG-----ILWDRRNS---VPVHRFDQF 1680 (1922)
Q Consensus 1610 gS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtg---k~I~kf~gh 1680 (1922)
+ +.||+|++||+.++........+......+...+..++|+| ++.+|++++ ++||++++ +++..+..|
T Consensus 200 ~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 200 A---SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp E---CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred E---eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 8 88999999999984321111000011112233455599999 567777765 99999987 678888889
Q ss_pred CCce-EEEEecCCC-EEEEEe-----EEEecCC-CeEEEEEcCCCc--eeEEEccCCC-EEEEEEccCchhhhhhhcccc
Q 000177 1681 TDHG-GGGFHPAGN-EVIINS-----EVWDLRK-FRLLRSVPSLDQ--TTITFNARGD-VIYAILRRNLEDVMSAVHTRR 1749 (1922)
Q Consensus 1681 ~~~V-sVaFSPdG~-~LASGS-----eIWDLrT-gklL~tl~gH~~--~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr 1749 (1922)
...+ +++|+|++. ++++|+ ++||+++ ..++.++.+|.. ++++|+|++. +|+++..++
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~------------ 344 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR------------ 344 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS------------
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC------------
Confidence 8888 999999997 577887 5999998 567888888866 8999999996 566664333
Q ss_pred cccCCcceEEEEecCC--------------Cceeeeecc-CCceEEEEEcCCCc-eEEEEecCCCCCccceEEEEEecCC
Q 000177 1750 VKHPLFAAFRTVDAIN--------------YSDIATIPV-DRCVLDFATERTDS-FVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1750 ~ksp~~ssFrt~Da~d--------------ys~IaTidv-kr~I~dLa~SPdds-~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.+++|+... ...+..... ...|.+++|+|++. .++... .++.+++|++...
T Consensus 345 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s------~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 345 -------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS------EDNIMQVWQMAEN 411 (430)
T ss_dssp -------CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE------TTSEEEEEEECHH
T ss_pred -------cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE------CCCCEEEeEcccc
Confidence 233333322 123333333 44699999999999 555442 3478999998654
Q ss_pred C
Q 000177 1814 R 1814 (1922)
Q Consensus 1814 r 1814 (1922)
.
T Consensus 412 ~ 412 (430)
T 2xyi_A 412 V 412 (430)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=224.49 Aligned_cols=222 Identities=11% Similarity=0.105 Sum_probs=145.8
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-----eeeccCCCCeeEEEeeecC--------CCcEEEE-e
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-----ESCTSHQAPVTLVQSHLSG--------ETQLLLS-S 1571 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-----~tL~gHss~VtsLq~afSp--------DG~lLaS-S 1571 (1922)
.|. ..+....+++++.+|++|+.|++|+|||+.++... ..+.+|.+.|++| +|+| |+++|++ |
T Consensus 87 ~~~-~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v--~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 87 LHD-GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDI--DIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp -----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEE--EEEEEECTTCSEEEEEEEEEE
T ss_pred ccC-CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEE--EEccccccccCCCCCEEEEEE
Confidence 354 55666677778899999999999999999887643 3568999999999 6776 8899999 4
Q ss_pred cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeecccc---------
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTS--------- 1637 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s--------- 1637 (1922)
.|++|+|||+.+ +.++..+.+ +.+++|+|++. +|+++ +.|++|++||+++++.........
T Consensus 164 ~D~tv~~Wd~~~--~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~---~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 164 DDCTLIIWRLTD--EGPILAGYPLSSPGISVQFRPSNPNQLIVG---ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp TTSEEEEEEEET--TEEEEEEEECSSCEEEEEEETTEEEEEEEE---ETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred CCCeEEEEECCC--CceeeeecCCCCCcEEEEECCCCCceEEec---CCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 699999999987 555555544 37899999874 78888 889999999999887654332100
Q ss_pred ---------ccccCCCCcceEEEEc-CCCCeEeecc-----EEEEcCCCcceeeeccCCCce------------------
Q 000177 1638 ---------VNLTGRGHAYSQIHFS-PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG------------------ 1684 (1922)
Q Consensus 1638 ---------~~~~~~gh~~~vVaFS-PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V------------------ 1684 (1922)
....++......+.|+ |+++.|++++ ++||+.+++....+..+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL 318 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence 0011122233346665 8999999877 899999887666554443222
Q ss_pred -EEEEec--CCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1685 -GGGFHP--AGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1685 -sVaFSP--dG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.+.|+| ++.++++|+ +|||+.+++.+..+.+|.. ++|+|||+|++|+++..
T Consensus 319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 334554 344666666 5999999988887777765 89999999999999853
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=224.90 Aligned_cols=246 Identities=9% Similarity=0.036 Sum_probs=183.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
..|.+++|||||+++||++.|++|+ |...++ .+.+|...|+++ +|+|+| .++++.+|+.+. ..+
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V--~FsPdg------~~~~~~~~~~~~---~~~ 79 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHV--KEFPLE------FENKLDFELAQQ---NGL 79 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEE--EEECCC------CCCTTTTSCCCS---SCS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEE--EECCCC------CcceEEEEeCCC---ceE
Confidence 7799999999999999999999999 755554 447999999999 899998 566666666542 222
Q ss_pred eE---eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc---
Q 000177 1590 HS---FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--- 1663 (1922)
Q Consensus 1590 ~t---f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--- 1663 (1922)
.+ -..+.+++|+|+|++|+++ +.||.|++||..+ ++..+. ..... ....+..++|||+|++|++++
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~---s~dg~V~iwd~~~--~l~~l~-~~~~~--~~~sv~svafSPDG~~LAsgs~DG 151 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVL---SNNGNVSVFKDNK--MLTNLD-SKGNL--SSRTYHCFEWNPIESSIVVGNEDG 151 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEE---ETTSCEEEEETTE--EEEECC-CSSCS--TTTCEEEEEECSSSSCEEEEETTS
T ss_pred eecCCCCcEEEEEECCCCCEEEEE---eCCCcEEEEeCCc--eeeecc-CCCcc--ccccEEEEEEcCCCCEEEEEcCCC
Confidence 22 1236899999999999999 8899999999654 444442 11000 012356799999999999988
Q ss_pred --EEEEcCCCcc-------eeee----ccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe---EEEEEc-CCCc--
Q 000177 1664 --ILWDRRNSVP-------VHRF----DQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR---LLRSVP-SLDQ-- 1718 (1922)
Q Consensus 1664 --rLWDlrtgk~-------I~kf----~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk---lL~tl~-gH~~-- 1718 (1922)
++||+.+++. +.++ .+|..+| +++|+|+| +++++ ++||+.+++ ..+++. +|..
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 8999998863 6776 5677788 99999999 55555 699998877 346674 6653
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce-eeeeccCCceEEEEE--cCCCceEEEEec
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD-IATIPVDRCVLDFAT--ERTDSFVGLITM 1795 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~-IaTidvkr~I~dLa~--SPdds~LAVVe~ 1795 (1922)
.+++|+ |.+|++++ ...++.|+..+... .........|+++++ +|++..+++..
T Consensus 230 ~svaFs--g~~LASa~--------------------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~- 286 (588)
T 2j04_A 230 TDLKIV--DYKVVLTC--------------------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN- 286 (588)
T ss_dssp CCEEEE--TTEEEEEC--------------------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-
T ss_pred EEEEEE--CCEEEEEe--------------------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-
Confidence 899999 68998883 24577888776666 344355667999999 99998877642
Q ss_pred CCCCCccceEEEEEe
Q 000177 1796 DDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1796 dds~d~dSsVRLyEV 1810 (1922)
.++. ++|..
T Consensus 287 -----edG~-klw~~ 295 (588)
T 2j04_A 287 -----KTSY-KVLLE 295 (588)
T ss_dssp -----SCEE-EEEES
T ss_pred -----CCCC-EEEee
Confidence 2245 77764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=227.34 Aligned_cols=235 Identities=6% Similarity=0.037 Sum_probs=174.8
Q ss_pred Eec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCC-----CeeEEEeeecCCCcEEEEe-cCCc
Q 000177 1503 TCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQA-----PVTLVQSHLSGETQLLLSS-SSQD 1575 (1922)
Q Consensus 1503 tLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss-----~VtsLq~afSpDG~lLaSS-sDgt 1575 (1922)
.+. .|. ..|++|+|||||++||+++.||+|+|||... ++..+. |.. .|.++ +|||||++|+++ .||+
T Consensus 79 ~~~~~~~-~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sv--afSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 79 LLNSQPV-CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCF--EWNPIESSIVVGNEDGE 152 (588)
T ss_dssp SSTTSCS-CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEE--EECSSSSCEEEEETTSE
T ss_pred EeecCCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEE--EEcCCCCEEEEEcCCCE
Confidence 344 576 8999999999999999999999999999644 666677 766 49999 899999999995 5999
Q ss_pred EEEeccCCCCCCc-------ceEe----cc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee---eeecccc
Q 000177 1576 VHLWNASSIAGGP-------MHSF----EG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE---AKLSDTS 1637 (1922)
Q Consensus 1576 VkLWDl~t~~gk~-------l~tf----~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i---~tL~d~s 1637 (1922)
|+|||+.. +.. +.++ .+ +.+++|+|+| ++++ +.|++|++||+.++... .++.
T Consensus 153 VkIWd~~~--~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas---s~D~tVrlWd~~~~~~~~~~~tL~--- 222 (588)
T 2j04_A 153 LQFFSIRK--NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA---LSNNSVFSMTVSASSHQPVSRMIQ--- 222 (588)
T ss_dssp EEEEECCC--CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE---ETTCCEEEECCCSSSSCCCEEEEE---
T ss_pred EEEEECCC--CccccccceeeeeeecccccccccEEEEEEcCCc--EEEE---eCCCeEEEEECCCCccccceeeec---
Confidence 99999987 432 4565 33 4889999999 6666 67999999999987742 3442
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEE--ecCCCEEEEEe----EEEecCC
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGF--HPAGNEVIINS----EVWDLRK 1706 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaF--SPdG~~LASGS----eIWDLrT 1706 (1922)
.++...+..++|+ |+.+++++ ++||+.+++......+|...+ .+.| +|++..|++++ ++|...
T Consensus 223 ---~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d- 296 (588)
T 2j04_A 223 ---NASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED- 296 (588)
T ss_dssp ---CCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS-
T ss_pred ---ccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec-
Confidence 0122345559999 68888776 999999887733333788888 9999 99999999988 488876
Q ss_pred CeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1707 FRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1707 gklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
.++|+|++..+++. +.....| .. .+..+..++....|+.++++|+
T Consensus 297 -------------~~~~spd~~l~a~~--d~~v~lW-~~-------------------~g~~l~~~~~~~~I~~va~SPd 341 (588)
T 2j04_A 297 -------------ELHVTADNIIAPYL--EKKFKKW-ST-------------------IWNEFNNYETTLVIHGISLSPD 341 (588)
T ss_dssp -------------SEEEECCCSSHHHH--HHHHHHT-TT-------------------TTTSSSSSCCEEEEEEEEECTT
T ss_pred -------------cEEECCCceEEEEc--CCEEEEE-EC-------------------CCCceeeeccceEEEEEEECCC
Confidence 36799999877764 1111111 11 1111222333345899999999
Q ss_pred CceEEEEe
Q 000177 1787 DSFVGLIT 1794 (1922)
Q Consensus 1787 ds~LAVVe 1794 (1922)
|..+|+..
T Consensus 342 G~~lA~~~ 349 (588)
T 2j04_A 342 GYSIAIVY 349 (588)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99988764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=207.45 Aligned_cols=221 Identities=8% Similarity=0.076 Sum_probs=163.8
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCCceeee-ccCCCCeeEEEeeecC
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN---------SSSPLESC-TSHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~---------tgk~l~tL-~gHss~VtsLq~afSp 1563 (1922)
.....+.+.++. . ..|+++.|+|+ +++|+.|++|++|+.. +++.+..+ .+|...|.++ .|+|
T Consensus 64 d~~~~~~~~~~~--~-~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 135 (343)
T 3lrv_A 64 QLKDSKTITTIT--T-PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYM--YGHN 135 (343)
T ss_dssp EESSSSCEEEEE--E-ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEE--ECCC
T ss_pred ECCCCcEEEEEe--c-CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEE--EcCC
Confidence 345556666665 3 56888999988 9999999999999665 55545555 4788999999 8899
Q ss_pred --CCcEEEEe-cCCcEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee-eeec
Q 000177 1564 --ETQLLLSS-SSQDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE-AKLS 1634 (1922)
Q Consensus 1564 --DG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i-~tL~ 1634 (1922)
++++++++ .|++|++||+++ ++++..+.. +++++|+|++.+|++| +.|+.|++||+++++.+ .++.
T Consensus 136 ~~~~~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~~pdg~~lasg---~~dg~i~iwd~~~~~~~~~~~~ 210 (343)
T 3lrv_A 136 EVNTEYFIWADNRGTIGFQSYED--DSQYIVHSAKSDVEYSSGVLHKDSLLLALY---SPDGILDVYNLSSPDQASSRFP 210 (343)
T ss_dssp ---CCEEEEEETTCCEEEEESSS--SCEEEEECCCSSCCCCEEEECTTSCEEEEE---CTTSCEEEEESSCTTSCCEECC
T ss_pred CCCCCEEEEEeCCCcEEEEECCC--CcEEEEEecCCCCceEEEEECCCCCEEEEE---cCCCEEEEEECCCCCCCccEEe
Confidence 99999984 699999999997 666554432 4789999999999999 89999999999999887 6665
Q ss_pred cccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeecc---CCCce---EEEEecCCCEEEEEe-----
Q 000177 1635 DTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQ---FTDHG---GGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1635 d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~g---h~~~V---sVaFSPdG~~LASGS----- 1699 (1922)
..+...+..++|+|+|.+|++++ ++||++++++++.+.. +...+ +++|+|+|++|++++
T Consensus 211 ------~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~ 284 (343)
T 3lrv_A 211 ------VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS 284 (343)
T ss_dssp ------CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTE
T ss_pred ------ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCc
Confidence 01233445599999999999877 9999999988776654 33333 499999999999955
Q ss_pred -EEEecCCCeEEEEEcCCCceeEEEcc---CCCEEEEEEc
Q 000177 1700 -EVWDLRKFRLLRSVPSLDQTTITFNA---RGDVIYAILR 1735 (1922)
Q Consensus 1700 -eIWDLrTgklL~tl~gH~~~sVaFSP---dG~~LaSgs~ 1735 (1922)
+||++.+....... .....+.|+| ++..++++..
T Consensus 285 i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 285 LTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp EEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEE
T ss_pred EEEEEEcccccceEe--cCceeEecCccccccceeEEEec
Confidence 59998654322211 1225677887 7777777753
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-17 Score=208.80 Aligned_cols=289 Identities=10% Similarity=0.068 Sum_probs=215.6
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCCceeeeccCCCCeeEEEeeecC----CCc
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS--NSSSPLESCTSHQAPVTLVQSHLSG----ETQ 1566 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl--~tgk~l~tL~gHss~VtsLq~afSp----DG~ 1566 (1922)
|....++.+.++..+. . +.+++|+|||++|++++.|++|++||+ .+++++.++.. ...+..+ +|+| ||+
T Consensus 164 ~D~~t~~~~~~i~~g~-~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~v--a~sp~~~~dg~ 238 (543)
T 1nir_A 164 VDGDSKKIVKVIDTGY-A-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSV--ESSKFKGYEDR 238 (543)
T ss_dssp EETTTCCEEEEEECST-T-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEE--EECCSTTCTTT
T ss_pred EECCCceEEEEEecCc-c-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceE--EeCCCcCCCCC
Confidence 4456677888888544 3 899999999999999999999999999 88888888874 4567888 8999 999
Q ss_pred EEEEec--CCcEEEeccCCCCCCcceEecc---------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1567 LLLSSS--SQDVHLWNASSIAGGPMHSFEG---------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1567 lLaSSs--DgtVkLWDl~t~~gk~l~tf~g---------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
+|+++. +++|.|||..+ ++++.++.. ...+.|+|++..++... ..+++|.+||+.+.+.
T Consensus 239 ~l~v~~~~~~~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~--~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 239 YTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDIDN 314 (543)
T ss_dssp EEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEECTTSSS
T ss_pred EEEEEEccCCeEEEEeccc--cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE--CCCCeEEEEEecCCCc
Confidence 988853 89999999987 777776642 25689999877655542 6789999999998765
Q ss_pred ee--eeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeecc----CCCceEEEEecC-CCEEE
Q 000177 1630 EA--KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQ----FTDHGGGGFHPA-GNEVI 1696 (1922)
Q Consensus 1630 i~--tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~g----h~~~VsVaFSPd-G~~LA 1696 (1922)
+. ++. .+.....+.|+|+|+++++++ .+||+.+++++..+.. |.......++|+ |..++
T Consensus 315 l~~~~i~--------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~ 386 (543)
T 1nir_A 315 LTVTSIG--------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 386 (543)
T ss_dssp CEEEEEE--------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEE
T ss_pred ceeEEec--------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEE
Confidence 54 332 122233489999999876443 8999999999888875 333332336887 66667
Q ss_pred EEe------EEEecCC-------CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEE
Q 000177 1697 INS------EVWDLRK-------FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV 1761 (1922)
Q Consensus 1697 SGS------eIWDLrT-------gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~ 1761 (1922)
+++ .|||+.+ +++++++++|.. ..|+|||+|++|++...-+.+. ....++.+|
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~------------~~~~~v~v~ 454 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA------------RISQSVAVF 454 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH------------HHHTCEEEE
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc------------ccCceEEEE
Confidence 764 4999998 899999998865 6899999999999984211000 023568899
Q ss_pred ecCCCcee-eeec---------cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1762 DAINYSDI-ATIP---------VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1762 Da~dys~I-aTid---------vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
|..+++.+ ..+. ....+..++++|+|..+.+...... +.++.+.+|+..
T Consensus 455 d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~-~~~~~i~v~D~~ 513 (543)
T 1nir_A 455 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK-NDSSALVVVDDK 513 (543)
T ss_dssp ETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT-TSCCEEEEEETT
T ss_pred ECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC-CCCCeEEEEECC
Confidence 98888766 4432 2567999999999999987643221 234778888753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-17 Score=186.82 Aligned_cols=255 Identities=13% Similarity=0.082 Sum_probs=200.5
Q ss_pred CCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSH-------TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~-------DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWD 1580 (1922)
..+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..+ .|++++++++. +. ++.|.+||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~--~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGA--TINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSE--EEETTTTEEEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceE--EECCCCCEEEEEecCCCEEEEEe
Confidence 56889999999999988884 568999999999988887643 346777 78999985544 44 78999999
Q ss_pred cCCCCCCcceEecc-------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1581 ASSIAGGPMHSFEG-------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g-------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
..+ ++.+..+.. ..++.|+|++++++++.. +.++.|.+||+.+++.+..+. ..+...
T Consensus 118 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~~~~~~~-------~~~~~~ 187 (353)
T 3vgz_A 118 AKT--GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQ-------NTGKMS 187 (353)
T ss_dssp TTT--CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTEEEEEEC-------CCCTTC
T ss_pred CCC--CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCceEEEec-------CCCCcc
Confidence 987 666666543 366899999998877622 357899999999999887774 112333
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc----CCCce-EEEEecCCCEEEEEe------EEEecCCCeEEE
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ----FTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLR 1711 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g----h~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~ 1711 (1922)
..++|+|+|+++++.+ .+||+.+++.+..+.. +...+ +++|+|+|+++++++ .+||+.+++.+.
T Consensus 188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 4589999999877655 8999999998887764 33334 799999999887765 399999999999
Q ss_pred EEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEE
Q 000177 1712 SVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1712 tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LA 1791 (1922)
.+.......++|+|+|++++++... ...+.+||..+.+.+..+.....+..++|+|+++++.
T Consensus 268 ~~~~~~~~~~~~s~dg~~l~v~~~~------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 268 KVAAPESLAVLFNPARNEAYVTHRQ------------------AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLY 329 (353)
T ss_dssp EEECSSCCCEEEETTTTEEEEEETT------------------TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEE
T ss_pred EEEcCCCceEEECCCCCEEEEEECC------------------CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEE
Confidence 8886656789999999988877421 2356788888888888888888899999999999888
Q ss_pred EEec
Q 000177 1792 LITM 1795 (1922)
Q Consensus 1792 VVe~ 1795 (1922)
+...
T Consensus 330 v~~~ 333 (353)
T 3vgz_A 330 VSVK 333 (353)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=225.61 Aligned_cols=212 Identities=14% Similarity=0.199 Sum_probs=167.4
Q ss_pred CCccccccceeeecCceeeEEecCCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEE
Q 000177 1483 GVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGD--SSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1483 g~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD--G~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq 1558 (1922)
+.++....|.+.....+.+.++.+|. +.|++++|+|+ +++|++|+.||+|++||+.+++ .+..+.+|...|+++
T Consensus 28 ~~dg~I~vwd~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v- 105 (753)
T 3jro_A 28 SSDKTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV- 105 (753)
T ss_dssp ETTTEEEEEEEETTEEEEEEEECCCS-SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE-
T ss_pred ECCCcEEEEecCCCCCccceeccCCc-CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEE-
Confidence 33444444444333667788999999 99999999988 9999999999999999999887 677889999999999
Q ss_pred eeecCC--CcEEEEe-cCCcEEEeccCCCCCCcceEecc----ceeEEEcC-------------CCCEEEEeecCCCCCe
Q 000177 1559 SHLSGE--TQLLLSS-SSQDVHLWNASSIAGGPMHSFEG----CKAARFSN-------------SGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1559 ~afSpD--G~lLaSS-sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSP-------------DG~~LaSgS~~S~Dgt 1618 (1922)
.|+|+ +++++++ .|++|++||+..........+.+ +.++.|+| ++++|++| +.|++
T Consensus 106 -~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg---s~dg~ 181 (753)
T 3jro_A 106 -QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG---GADNL 181 (753)
T ss_dssp -EECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE---ETTSC
T ss_pred -EECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE---ECCCe
Confidence 88998 8888885 59999999998732233444444 38899999 58999999 88999
Q ss_pred EEEEECCCCce----eeeeccccccccCCCCcceEEEEcCC---CCeEeecc-----EEEEcCCCc-----ceeeeccCC
Q 000177 1619 ILLYDIQTYQL----EAKLSDTSVNLTGRGHAYSQIHFSPS---DTMLLWNG-----ILWDRRNSV-----PVHRFDQFT 1681 (1922)
Q Consensus 1619 IrIWDlrTgk~----i~tL~d~s~~~~~~gh~~~vVaFSPd---G~lLaSgg-----rLWDlrtgk-----~I~kf~gh~ 1681 (1922)
|++||++++.. ..++. .+...+..++|+|+ ++++++++ ++||++++. .+.....|.
T Consensus 182 I~iwd~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 254 (753)
T 3jro_A 182 VKIWKYNSDAQTYVLESTLE-------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254 (753)
T ss_dssp EEEEEEETTTTEEEEEEEEC-------CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred EEEEeccCCcccceeeeeec-------CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence 99999998743 33332 12334455999999 89999887 999999874 334445577
Q ss_pred Cce-EEEEecCCCEEEEEe-----EEEecCCC
Q 000177 1682 DHG-GGGFHPAGNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1682 ~~V-sVaFSPdG~~LASGS-----eIWDLrTg 1707 (1922)
..+ +++|+|+|++|++++ .+||+.++
T Consensus 255 ~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 777 999999999999998 59999854
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=211.11 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=141.6
Q ss_pred eeeEEecCCCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLG--------DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLL 1569 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP--------DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLa 1569 (1922)
.++.++.+|. +.|++++|+| ||++|+|||.|++|+|||+.++.++..+.+|..+|.++ +|+|++. +|+
T Consensus 127 ~~~~~~~gH~-~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v--~~~p~~~~~l~ 203 (393)
T 4gq1_A 127 HVLGGKSGHH-NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISV--QFRPSNPNQLI 203 (393)
T ss_dssp EEECTTTSCS-SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEE--EEETTEEEEEE
T ss_pred eeecccCCCC-CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEE--EECCCCCceEE
Confidence 3455678999 9999999998 89999999999999999999998888888999999999 8899874 677
Q ss_pred E-ecCCcEEEeccCCCCCCcceEe-------------------------cc----ceeEEEc-CCCCEEEEeecCCCCCe
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSF-------------------------EG----CKAARFS-NSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf-------------------------~g----h~sVaFS-PDG~~LaSgS~~S~Dgt 1618 (1922)
+ +.|++|++||+.+ ++....+ .+ +.++.|+ |+++.|+++ +.|++
T Consensus 204 ~~~~d~~v~~wd~~t--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~---s~d~~ 278 (393)
T 4gq1_A 204 VGERNGNIRIFDWTL--NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM---CKSGA 278 (393)
T ss_dssp EEETTSEEEEEETTC--CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE---CTTSE
T ss_pred ecCCCCEEEEEECCC--CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE---eCCCC
Confidence 7 4699999999987 3322211 11 2567776 799999999 89999
Q ss_pred EEEEECCCCceeeeeccccccc------------cCCCCcceEEEEcC-CCC-eEeecc-----EEEEcCCCcceeeecc
Q 000177 1619 ILLYDIQTYQLEAKLSDTSVNL------------TGRGHAYSQIHFSP-SDT-MLLWNG-----ILWDRRNSVPVHRFDQ 1679 (1922)
Q Consensus 1619 IrIWDlrTgk~i~tL~d~s~~~------------~~~gh~~~vVaFSP-dG~-lLaSgg-----rLWDlrtgk~I~kf~g 1679 (1922)
+++||+.+++....+....... ........ ..|+| .+. ++++++ ++||+.+++++..+.+
T Consensus 279 i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 279 WLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEEEC-------------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9999999877665543111000 00011111 33444 344 445554 8999999999988888
Q ss_pred CCCce-EEEEecCCCEEEEEeE----EEecC
Q 000177 1680 FTDHG-GGGFHPAGNEVIINSE----VWDLR 1705 (1922)
Q Consensus 1680 h~~~V-sVaFSPdG~~LASGSe----IWDLr 1705 (1922)
|...| +++|||+|++||++++ +|.+.
T Consensus 358 ~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 358 LGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 98888 9999999999999983 56654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-17 Score=194.26 Aligned_cols=234 Identities=11% Similarity=0.103 Sum_probs=170.5
Q ss_pred EEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE--eccceeEEEcCCCCEEEEeec
Q 000177 1535 IFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS--FEGCKAARFSNSGNLFAALPT 1612 (1922)
Q Consensus 1535 IWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t--f~gh~sVaFSPDG~~LaSgS~ 1612 (1922)
||++.+.+.+.++..|...|+++ +|+|||++|+++.+..++|||+.+ ...+.. +.++..+.|.++++.++..
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v--~fs~dg~~la~g~~~~~~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDY--EFNQDQSCLILSTLKSFEIYNVHP--VAHIMSQEMRHLSKVRMLHRTNYVAFV-- 76 (355)
T ss_dssp ----------------CCCCCEE--EECTTSSEEEEECSSEEEEEEETT--EEEEEEEECSCCCEEEECTTSSEEEEE--
T ss_pred cccccccCCccccccCCCceEEE--EECCCCCEEEEEcCCEEEEEecCC--cceeeeeecCCeEEEEEcCCCCEEEEE--
Confidence 67777888888889999999999 899999999998877899999986 443333 3356778999988887543
Q ss_pred CCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--EEEEcCCC-cceeeeccCCCce-EEEE
Q 000177 1613 ETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--ILWDRRNS-VPVHRFDQFTDHG-GGGF 1688 (1922)
Q Consensus 1613 ~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--rLWDlrtg-k~I~kf~gh~~~V-sVaF 1688 (1922)
++.|++|++||+.+++++..+. ....+..+.|+++.-.++..+ ++||+.++ +.++++.. .. .+++
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~ 145 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIK--------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEF 145 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred ECCccEEEEEECCCCcEEEEEE--------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence 1677899999999999988875 233455588988876665555 99999998 78887766 33 5677
Q ss_pred ecCCCEEEEE--e-----EEEecCCCe----------------EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhh
Q 000177 1689 HPAGNEVIIN--S-----EVWDLRKFR----------------LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMS 1743 (1922)
Q Consensus 1689 SPdG~~LASG--S-----eIWDLrTgk----------------lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s 1743 (1922)
+| .+++++ + ++||+++++ .+.++.+|.. ++++|+|+|++|++++.
T Consensus 146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-------- 215 (355)
T 3vu4_A 146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-------- 215 (355)
T ss_dssp ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--------
T ss_pred Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--------
Confidence 77 667765 3 599999865 2678888877 89999999999999952
Q ss_pred hhcccccccCCcce-EEEEecCCCceeeeec---cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1744 AVHTRRVKHPLFAA-FRTVDAINYSDIATIP---VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1744 ~lh~rr~ksp~~ss-Frt~Da~dys~IaTid---vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+.. +++||..+...+.++. ....|..++|+|++.+++... .+..+++|++..
T Consensus 216 -----------d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s------~d~~v~iw~~~~ 271 (355)
T 3vu4_A 216 -----------DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS------DKWTLHVFEIFN 271 (355)
T ss_dssp -----------TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE------TTCEEEEEESSC
T ss_pred -----------CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE------CCCEEEEEEccC
Confidence 344 7888888888888887 466799999999999998764 347899999854
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=205.63 Aligned_cols=178 Identities=11% Similarity=0.119 Sum_probs=137.1
Q ss_pred CCCCEEEEEe--CCCcEEEEEC-CCCCceeeeccCCCCeeEEEeeecC---CCcEEEE-ecCCcEEEeccCCCCCCcceE
Q 000177 1519 GDSSHIAVGS--HTKELKIFDS-NSSSPLESCTSHQAPVTLVQSHLSG---ETQLLLS-SSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1519 PDG~lLASGS--~DGtIkIWDl-~tgk~l~tL~gHss~VtsLq~afSp---DG~lLaS-SsDgtVkLWDl~t~~gk~l~t 1591 (1922)
++|+++.+++ .|+.|++|++ .+|+.+.++.+|...++.+ +|++ ++.+|++ +.|++|+|||+.+ ++++++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l--~fs~~~g~~~~LaSgS~D~TIkIWDl~T--Gk~l~t 218 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL--TFAEVQGMQEALLGTTIMNNIVIWNLKT--GQLLKK 218 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE--EEEEEETSTTEEEEEETTSEEEEEETTT--CCEEEE
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE--EeeccCCCCceEEEecCCCcEEEEECCC--CcEEEE
Confidence 3455444433 5999999999 4588888899999999999 5666 7789999 5699999999998 899999
Q ss_pred eccc-------eeEEEcCCCCEEEEeec---------CCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1592 FEGC-------KAARFSNSGNLFAALPT---------ETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1592 f~gh-------~sVaFSPDG~~LaSgS~---------~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
+.++ .+++|+|+|+++++++. ++.|++|++||..+++++.++.-. . ..+|....+..+.+
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-~---p~Gh~~~~lsg~~s 294 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-L---PPGQAGRFLEGDVK 294 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-C---CTTCCCCEEEEEEE
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-c---cCCCcceeEccccC
Confidence 9753 35689999998754321 278999999999999987765300 0 12555445555555
Q ss_pred CCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEe-----EEEec
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
+.++++++ +|||+.++++++++.+|...+ +++|||||++|++|+ +|||+
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88888865 999999999999999988754 589999999999999 69986
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-17 Score=197.74 Aligned_cols=259 Identities=14% Similarity=0.089 Sum_probs=183.4
Q ss_pred cCceee--EEecCCCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCCceeeeccCCCC
Q 000177 1496 SRFRPW--RTCRDDAGALLTCITFLG--------------DSSHIAVGSHT------KELKIFDSNSSSPLESCTSHQAP 1553 (1922)
Q Consensus 1496 srfrpi--rtLrgH~d~~Vt~LaFSP--------------DG~lLASGS~D------GtIkIWDl~tgk~l~tL~gHss~ 1553 (1922)
...+.+ .++.+|. ..+..+++++ .+..|+.++.+ ++|++||+. +.....+.+|...
T Consensus 103 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~ 180 (415)
T 2hqs_A 103 APGTVLAQNSYKVNK-QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQP 180 (415)
T ss_dssp STTCEEEEEEEEECG-GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSC
T ss_pred CCCCEEeeeEEEcCh-hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCc
Confidence 455555 5588888 7888888775 26677776664 799999997 5567888889999
Q ss_pred eeEEEeeecCCCcEEEEe-cC---CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1554 VTLVQSHLSGETQLLLSS-SS---QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1554 VtsLq~afSpDG~lLaSS-sD---gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
|.++ +|+|||++|+++ .+ .+|++||+.+ +++. .+.. ..+++|+|+|++|+..+....+..|++||+.
T Consensus 181 v~~~--~~Spdg~~la~~s~~~~~~~i~~~d~~t--g~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~ 255 (415)
T 2hqs_A 181 LMSP--AWSPDGSKLAYVTFESGRSALVIQTLAN--GAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 255 (415)
T ss_dssp EEEE--EECTTSSEEEEEECTTSSCEEEEEETTT--CCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred ceee--EEcCCCCEEEEEEecCCCcEEEEEECCC--CcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence 9999 899999999885 45 3899999987 5543 3332 3789999999988844222234569999999
Q ss_pred CCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEE
Q 000177 1626 TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVI 1696 (1922)
Q Consensus 1626 Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LA 1696 (1922)
+++.. .+. .+......++|+|+|++|++.+ .+||+.+++. ..+..+...+ +++|+|+|++|+
T Consensus 256 ~~~~~-~l~-------~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 256 SGQIR-QVT-------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV 326 (415)
T ss_dssp TCCEE-ECC-------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEE
T ss_pred CCCEE-eCc-------CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEE
Confidence 88763 333 1223345599999999887543 5568887764 3454555555 899999999998
Q ss_pred EEe--------EEEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1697 INS--------EVWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1697 SGS--------eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
+++ .+||+.+++.. .+..+. ..+++|+|+|++|+++..++. ...+..++....
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~----------------~~~l~~~d~~g~- 388 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGM----------------GSVLNLVSTDGR- 388 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETT----------------EEEEEEEETTSC-
T ss_pred EEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCC----------------ccEEEEEECCCC-
Confidence 876 38999988774 454443 379999999999988753321 124566665432
Q ss_pred eeeeec-cCCceEEEEEcCCCc
Q 000177 1768 DIATIP-VDRCVLDFATERTDS 1788 (1922)
Q Consensus 1768 ~IaTid-vkr~I~dLa~SPdds 1788 (1922)
....+. ....|.+++|+|.-.
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCCC
T ss_pred cEEEeeCCCCCCcCCccccccc
Confidence 333333 345799999999654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-16 Score=179.25 Aligned_cols=259 Identities=13% Similarity=0.141 Sum_probs=179.8
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEeccCCCCCCc-ce
Q 000177 1515 ITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWNASSIAGGP-MH 1590 (1922)
Q Consensus 1515 LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWDl~t~~gk~-l~ 1590 (1922)
..|.++++ .+++++.++.|++||+.+++.+..+..+...+ .+ .|+|+++++++ +. ++.|.+||+.+ ++. ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~--~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DT--AITSDCSNVVVTSDFCQTLVQIETQL--EPPKVV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EE--EECSSSCEEEEEESTTCEEEEEECSS--SSCEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eE--EEcCCCCEEEEEeCCCCeEEEEECCC--CceeEE
Confidence 34666555 47788899999999999999988887766667 88 89999996655 44 88999999987 565 44
Q ss_pred Eecc---cee-EEEcCCCCEEEEeecCCCC-C--eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1591 SFEG---CKA-ARFSNSGNLFAALPTETSD-R--GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1591 tf~g---h~s-VaFSPDG~~LaSgS~~S~D-g--tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
.+.. ... ++|+|+|++++++ ..+ + .|.+||+.+++.+..+. .+.....++|+|+|+++++.+
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~---~~~~~~~~i~v~d~~~~~~~~~~~--------~~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTV---TGLNHPFNMQSYSFLKNKFISTIP--------IPYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEEC---CCSSSSCEEEEEETTTTEEEEEEE--------CCTTEEEEEECTTSSCEEEEE
T ss_pred ecccCCCCccceEECCCCCEEEEe---cCCCCcccEEEEECCCCCeEEEEE--------CCCCccceEECCCCCEEEEEe
Confidence 4443 245 9999999999854 333 3 99999999999888775 233345699999998665432
Q ss_pred -------EEEEcCCCcce-----eeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeE---EEEEcCCCc-eeE
Q 000177 1664 -------ILWDRRNSVPV-----HRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRL---LRSVPSLDQ-TTI 1721 (1922)
Q Consensus 1664 -------rLWDlrtgk~I-----~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgkl---L~tl~gH~~-~sV 1721 (1922)
.+|++.....+ ..+........++|+|+|++++.++ .+||+.+++. +..++.+.. ..+
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 226 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTI 226 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCE
T ss_pred cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceE
Confidence 58998754433 2222223334899999999776655 4999999988 888875544 799
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce--eeeecc-----CC---ceEEEEEcCCCceEE
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD--IATIPV-----DR---CVLDFATERTDSFVG 1791 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~--IaTidv-----kr---~I~dLa~SPdds~LA 1791 (1922)
+|+|+|++++++...+ ..+.++|..+.+. +..+.. .. ....++|+|+++++.
T Consensus 227 ~~spdg~~l~v~~~~~------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 227 VVSRDGSTVYVLTEST------------------VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp EECTTSSEEEEECSSE------------------EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred EECCCCCEEEEEEcCC------------------CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 9999999988773211 2234455444333 222211 11 134589999999988
Q ss_pred EEecCCCCCccceEEEEEecC
Q 000177 1792 LITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1792 VVe~dds~d~dSsVRLyEVGr 1812 (1922)
+...+ ...+.+|++..
T Consensus 289 v~~~~-----~~~v~v~d~~~ 304 (331)
T 3u4y_A 289 ISANI-----SRELKVFTISG 304 (331)
T ss_dssp EEETT-----TTEEEEEETTS
T ss_pred EecCC-----CCcEEEEEecC
Confidence 76422 36789998753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-17 Score=197.10 Aligned_cols=265 Identities=9% Similarity=0.043 Sum_probs=186.2
Q ss_pred CEEEEEEcCCCC-EEEEEe----CCC----cEEEEEC--CCCCce--eeeccCCCCeeEEEeeecC--------------
Q 000177 1511 LLTCITFLGDSS-HIAVGS----HTK----ELKIFDS--NSSSPL--ESCTSHQAPVTLVQSHLSG-------------- 1563 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~-lLASGS----~DG----tIkIWDl--~tgk~l--~tL~gHss~VtsLq~afSp-------------- 1563 (1922)
.|....|++.|. ++++|+ .|| +|+|||+ .+++++ ..+.+|...+..+ ++++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYA--GHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHH--HHHHHHHHHHHHHSSCCC
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHH--HHHHHHHHHHHHcCCCCc
Confidence 455667877665 666876 467 8999999 999887 4588999888887 5553
Q ss_pred -CCcEEEEecC------CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1564 -ETQLLLSSSS------QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1564 -DG~lLaSSsD------gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
.+++++++.+ ++|++||+.. .....+.+ +.+++|+|+|++|++++.+..+..|++||+.++++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g---~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG---YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS---CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC---CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 3444444433 7999999974 34555554 37899999999999985443346999999999887543
Q ss_pred eccccccccCCCCcceEEEEcCCCCeEe-ecc-------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG-------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg-------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
.. +......++|+|+|++|+ +++ ++||+.+++. ..+..+...+ ++.|+|+|++|++++
T Consensus 219 ~~--------~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g 289 (415)
T 2hqs_A 219 AS--------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 289 (415)
T ss_dssp EC--------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred ec--------CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCC
Confidence 22 123345599999999877 432 7889988865 5676777666 899999999998876
Q ss_pred --E--EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec
Q 000177 1700 --E--VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP 1773 (1922)
Q Consensus 1700 --e--IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid 1773 (1922)
. +||+.+++.. .+..+.. .+++|+|+|++|+++...+. ...+.+++..+.... .+.
T Consensus 290 ~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g----------------~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 290 RPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGG----------------QQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp SCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSS----------------CEEEEEEETTTCCEE-ECC
T ss_pred CcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCC----------------ceEEEEEECCCCCEE-Eec
Confidence 3 5588877643 3433333 68999999999998854321 234566676554432 222
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1774 VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1774 vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
....+..++|+|++++|+....+. ....+.+|++
T Consensus 352 ~~~~~~~~~~spdg~~l~~~s~~~---~~~~l~~~d~ 385 (415)
T 2hqs_A 352 STFLDETPSLAPNGTMVIYSSSQG---MGSVLNLVST 385 (415)
T ss_dssp CSSSCEEEEECTTSSEEEEEEEET---TEEEEEEEET
T ss_pred CCCCcCCeEEcCCCCEEEEEEcCC---CccEEEEEEC
Confidence 233789999999999988775332 1235677765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-16 Score=204.27 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=186.8
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCCceeeeccCCC------------------------CeeEEEe
Q 000177 1510 ALLTCITFLGDSSHIAVGSH-TK-----ELKIFDSNSSSPLESCTSHQA------------------------PVTLVQS 1559 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~-DG-----tIkIWDl~tgk~l~tL~gHss------------------------~VtsLq~ 1559 (1922)
..|++++|||||++|++++. |+ +|++||+.+++....+..|.. .|.++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 114 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY-- 114 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC--
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee--
Confidence 56999999999999999998 88 999999999988777755433 37788
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCC--cceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGG--PMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk--~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
+|||||++|+++.+++|++||+.+ +. .+..+.. +.+++|+|||++|+++ + ++.|++||+.+++.....
T Consensus 115 ~~SpDg~~l~~~~~~~i~~~d~~~--~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~---~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGGELYLYDLKQ--EGKAAVRQLTHGEGFATDAKLSPKGGFVSFI---R-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEESSS--CSTTSCCBCCCSSSCEEEEEECTTSSEEEEE---E-TTEEEEEETTTTEEEECC
T ss_pred EECCCCCEEEEEeCCcEEEEECCC--CCcceEEEcccCCcccccccCCCCCCEEEEE---e-CCcEEEEecCCCCEEEec
Confidence 899999999997779999999987 41 2333333 4789999999999997 3 468999999988765543
Q ss_pred ccccccccCCCC----------cceEEEEcCCCCeEeec-------------------------------------c-EE
Q 000177 1634 SDTSVNLTGRGH----------AYSQIHFSPSDTMLLWN-------------------------------------G-IL 1665 (1922)
Q Consensus 1634 ~d~s~~~~~~gh----------~~~vVaFSPdG~lLaSg-------------------------------------g-rL 1665 (1922)
...... ...++ ....++|||||++|++. . .+
T Consensus 189 ~~~~~~-~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 ADGSTT-IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCSS-EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCccc-eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 310000 00000 02348999999988854 1 57
Q ss_pred EEcCC-Ccceeeec--cCCCce-EEEEecCCCEEEEEe----------EEEecCCCeEEEEEcCCCc------eeEEEcc
Q 000177 1666 WDRRN-SVPVHRFD--QFTDHG-GGGFHPAGNEVIINS----------EVWDLRKFRLLRSVPSLDQ------TTITFNA 1725 (1922)
Q Consensus 1666 WDlrt-gk~I~kf~--gh~~~V-sVaFSPdG~~LASGS----------eIWDLrTgklL~tl~gH~~------~sVaFSP 1725 (1922)
||+.+ ++...... .+...+ .++| |||++|++++ .+||+.+++....+..+.. ..++|+|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 88888 77654433 244555 8999 9999998764 3899999988777665432 4899999
Q ss_pred CCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec-cCCceEEE-EEcCCCceEEEEecCCCCCccc
Q 000177 1726 RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP-VDRCVLDF-ATERTDSFVGLITMDDQEDMFS 1803 (1922)
Q Consensus 1726 dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid-vkr~I~dL-a~SPdds~LAVVe~dds~d~dS 1803 (1922)
+|++++++..+.. ..+..++.... +..+. ....+..+ .|+|++..+++....+ ...
T Consensus 347 dg~~~~~~~~~g~-----------------~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~---~~~ 404 (741)
T 2ecf_A 347 DGSILWSSERTGF-----------------QHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIE---SAR 404 (741)
T ss_dssp TSCEEEEECTTSS-----------------CEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSS---CTT
T ss_pred CCeEEEEecCCCc-----------------cEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCC---CCc
Confidence 9997777632221 11222332111 22222 24457776 5999999887765322 123
Q ss_pred eEEEEEec
Q 000177 1804 SARIYEIG 1811 (1922)
Q Consensus 1804 sVRLyEVG 1811 (1922)
.++||.+.
T Consensus 405 ~~~l~~~~ 412 (741)
T 2ecf_A 405 ESQIYAVP 412 (741)
T ss_dssp CBEEEEEE
T ss_pred eEEEEEEE
Confidence 67888874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=203.70 Aligned_cols=269 Identities=8% Similarity=0.021 Sum_probs=185.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
|.+++|||||++|++++. +.|++||+.++. ....+..|...+..+ .|||||++|++++++.|++||+.+ ++..
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~--~~SPDG~~la~~~~~~i~~~d~~~--g~~~ 185 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDA--KLSPKGGFVSFIRGRNLWVIDLAS--GRQM 185 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEE--EECTTSSEEEEEETTEEEEEETTT--TEEE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccc--cCCCCCCEEEEEeCCcEEEEecCC--CCEE
Confidence 789999999999999987 999999998883 456677888899999 899999999998888999999986 4433
Q ss_pred eEecc--------------------ceeEEEcCCCCEEEEeecCCC------------------------------CCeE
Q 000177 1590 HSFEG--------------------CKAARFSNSGNLFAALPTETS------------------------------DRGI 1619 (1922)
Q Consensus 1590 ~tf~g--------------------h~sVaFSPDG~~LaSgS~~S~------------------------------DgtI 1619 (1922)
..... ...+.|+|||++|++++.+.. ...|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 32221 267999999999998833210 0178
Q ss_pred EEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeeccCCC----ce
Q 000177 1620 LLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQFTD----HG 1684 (1922)
Q Consensus 1620 rIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~gh~~----~V 1684 (1922)
++||+.+ ++....... ..+......++| |||++|+..+ .+||+.++++...+..+.. .+
T Consensus 266 ~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLG-----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EEECSSTTCCCEEECCC-----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred EEEECCCCCceEEecCC-----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 8999998 776543320 012233445999 9999988432 8999999987776665543 23
Q ss_pred -EEEEecCCCEEEEEe-----EEEecC-CCeEEEEEcCCCc--eeE-EEccCCCEEEEEEccCchhhhhhhcccccccCC
Q 000177 1685 -GGGFHPAGNEVIINS-----EVWDLR-KFRLLRSVPSLDQ--TTI-TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPL 1754 (1922)
Q Consensus 1685 -sVaFSPdG~~LASGS-----eIWDLr-TgklL~tl~gH~~--~sV-aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~ 1754 (1922)
.+.|+|+|+++++++ +||.+. +++ +..+..+.. ..+ .|+|+|+.|+.....+..
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~--------------- 403 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA--------------- 403 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT---------------
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC---------------
Confidence 789999999888776 488765 355 677766654 455 699999988766433210
Q ss_pred cceEEEEecC-CCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1755 FAAFRTVDAI-NYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1755 ~ssFrt~Da~-dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
...++|+.. +...+..+.....+..++|+|+++++++...... .-..+.+++.
T Consensus 404 -~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~p~~~~l~~~ 457 (741)
T 2ecf_A 404 -RESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNS--TPPQIELFRA 457 (741)
T ss_dssp -TCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETT--EEEEEEEEET
T ss_pred -ceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCC--CCCeEEEEEc
Confidence 012222211 1222333333556889999999999987753321 1234556654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-16 Score=176.62 Aligned_cols=232 Identities=12% Similarity=0.120 Sum_probs=169.3
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH-TKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
.|.....+.+..+..+. ..+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+..++.++ .|+|++++|+
T Consensus 24 ~~d~~~~~~~~~~~~~~-~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~ 99 (331)
T 3u4y_A 24 FFSTDTLEILNQITLGY-DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV--DITPDDQFAV 99 (331)
T ss_dssp EEETTTCCEEEEEECCC-CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE--EECTTSSEEE
T ss_pred EEeCcccceeeeEEccC-Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce--EECCCCCEEE
Confidence 33345566666666665 667 9999999997776665 89999999999988 77777777777768 8899999988
Q ss_pred EecCC----cEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCe-EEEEECCCCceeeeecccccccc
Q 000177 1570 SSSSQ----DVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRG-ILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1570 SSsDg----tVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~Dgt-IrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
++.+. .|.+||+.+ ++.+..+.. ..+++|+|+|++++++. ..++. |.+|++.....+.... ....
T Consensus 100 ~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~i~~~~~~~~g~~~~~~-~~~~-- 172 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLK--NKFISTIPIPYDAVGIAISPNGNGLILID--RSSANTVRRFKIDADGVLFDTG-QEFI-- 172 (331)
T ss_dssp ECCCSSSSCEEEEEETTT--TEEEEEEECCTTEEEEEECTTSSCEEEEE--ETTTTEEEEEEECTTCCEEEEE-EEEE--
T ss_pred EecCCCCcccEEEEECCC--CCeEEEEECCCCccceEECCCCCEEEEEe--cCCCceEEEEEECCCCcEeecC-Cccc--
Confidence 75433 899999987 666666643 37899999998666552 44567 9999998644432221 0000
Q ss_pred CCCCcceEEEEcCCCCeEe-ecc-----EEEEcCCCcc---eeeeccCCCceEEEEecCCCEEEEEe------EEEecCC
Q 000177 1642 GRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSVP---VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRK 1706 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk~---I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrT 1706 (1922)
..+.....++|+|+|++++ ++. .+||+.+++. +..+........++|+|+|++|++++ .+||+.+
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 1233445599999999654 332 8999999988 88887665555899999999876654 3999999
Q ss_pred CeE--EEEEcCC----Cc-----eeEEEccCCCEEEEEE
Q 000177 1707 FRL--LRSVPSL----DQ-----TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1707 gkl--L~tl~gH----~~-----~sVaFSPdG~~LaSgs 1734 (1922)
+++ +..+..+ .. +.++|+|+|++|+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 253 GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred CceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 887 5555533 11 3589999999998774
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=176.51 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=160.4
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCceeeeccC-CCCeeEEEeeecCCCcEEEEec---CCcE
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-SSPLESCTSH-QAPVTLVQSHLSGETQLLLSSS---SQDV 1576 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-gk~l~tL~gH-ss~VtsLq~afSpDG~lLaSSs---DgtV 1576 (1922)
..+..|. ..|.+++|+|+|++|++++ ++.|++||+.+ ++....+.+| ...|.++ .|+|++++|+++. ++.+
T Consensus 35 ~~~~~~~-~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 35 RVVWQTP-ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH--GISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEES-SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC--EECTTSSEEEEEECTTTSSC
T ss_pred eeeccCC-cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccce--EECCCCCEEEEEEeCCCCcc
Confidence 3456687 8999999999999999987 88999999999 8877777666 4778888 8899999998853 3456
Q ss_pred EEeccCCCCCCcceEecc---ceeEEEcCCCCEEE-EeecCCCCCeEEEEECC--CCceeeeeccccccccCCCCcceEE
Q 000177 1577 HLWNASSIAGGPMHSFEG---CKAARFSNSGNLFA-ALPTETSDRGILLYDIQ--TYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~La-SgS~~S~DgtIrIWDlr--Tgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
.||.+....+. ...+.. ...++|+|++++|+ ++ ..++.++||++. +++. ..+. .+......+
T Consensus 111 ~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~---~~~~~~~l~~~~~~~~~~-~~~~-------~~~~~~~~~ 178 (297)
T 2ojh_A 111 AIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCG---IRDQVFDIYSMDIDSGVE-TRLT-------HGEGRNDGP 178 (297)
T ss_dssp EEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEE---EETTEEEEEEEETTTCCE-EECC-------CSSSCEEEE
T ss_pred eEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEE---CCCCceEEEEEECCCCcc-eEcc-------cCCCccccc
Confidence 66655431133 333332 47789999999887 45 567889999864 3333 3332 122344559
Q ss_pred EEcCCCCeEeecc------EEEEcC-CCcceeeeccCCCce-EEEEecCCCEEEEEe----------------EEEecCC
Q 000177 1651 HFSPSDTMLLWNG------ILWDRR-NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----------------EVWDLRK 1706 (1922)
Q Consensus 1651 aFSPdG~lLaSgg------rLWDlr-tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----------------eIWDLrT 1706 (1922)
+|+|+|++|+..+ .+|++. .+..+..+..+...+ ++.|+|+|++|++++ .+||+.+
T Consensus 179 ~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred eECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 9999999877432 899987 566777777777666 899999999887764 2789988
Q ss_pred CeE--EEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1707 FRL--LRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1707 gkl--L~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
++. +..+.+|.. ..++|+|+|++|+++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 259 GNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 765 444445543 789999999999988543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-17 Score=206.96 Aligned_cols=276 Identities=12% Similarity=0.077 Sum_probs=186.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCC---CeeEEEeeecCCCcEEEEec-C---------CcEE
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQA---PVTLVQSHLSGETQLLLSSS-S---------QDVH 1577 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss---~VtsLq~afSpDG~lLaSSs-D---------gtVk 1577 (1922)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.++ +|||||++|+++. + +.|+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~--~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRY--EISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEE--EECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceE--EECCCCCEEEEEecCccceeecceeeEE
Confidence 3668899999998877 7899999999999998888887765 49999 8999999998853 2 7789
Q ss_pred EeccCCCCCCcceEec---c----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC-----
Q 000177 1578 LWNASSIAGGPMHSFE---G----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH----- 1645 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~---g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh----- 1645 (1922)
+||+.+ +++ ..+. + +..++|+|||++|+++ + ++.|++||+.+++...............++
T Consensus 95 ~~d~~~--~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~---~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 95 LSKIPH--GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFI---F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EEESSS--CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEE---E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred EEECCC--Cce-EeccCCccccccccccEECCCCCEEEEE---E-CCeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 999987 544 2332 2 3679999999999997 3 378999999998876554311000000000
Q ss_pred ------cceEEEEcCCCCeEeecc---------------------------------------EEEEcCCCcceeeeccC
Q 000177 1646 ------AYSQIHFSPSDTMLLWNG---------------------------------------ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1646 ------~~~vVaFSPdG~lLaSgg---------------------------------------rLWDlrtgk~I~kf~gh 1680 (1922)
....++|||||++|++.+ ++||+.+++....+..+
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 124599999999888531 68898888766666554
Q ss_pred ------CCce-EEEEecCCCEEEEEe---------EEEecCCCeEEEEEcCC-Cc------eeEEEccCCCEEEEE-Ecc
Q 000177 1681 ------TDHG-GGGFHPAGNEVIINS---------EVWDLRKFRLLRSVPSL-DQ------TTITFNARGDVIYAI-LRR 1736 (1922)
Q Consensus 1681 ------~~~V-sVaFSPdG~~LASGS---------eIWDLrTgklL~tl~gH-~~------~sVaFSPdG~~LaSg-s~~ 1736 (1922)
...+ .+.|+|||++|++.+ .+||+.++++...+..+ .. ..++|+|+|+.|+.. ...
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 3445 899999999887664 38999999877665432 22 279999999988765 322
Q ss_pred CchhhhhhhcccccccCCcceEEEEe-cCCCce--eeeec-cCCceEE-EEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1737 NLEDVMSAVHTRRVKHPLFAAFRTVD-AINYSD--IATIP-VDRCVLD-FATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1737 d~~dv~s~lh~rr~ksp~~ssFrt~D-a~dys~--IaTid-vkr~I~d-La~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+... .....+..++ ...... +..+. ....+.. ++|+|+++.|+....++ ....+++|.+.
T Consensus 328 ~~~~------------~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~---~~~~~~l~~~~ 392 (723)
T 1xfd_A 328 QGGR------------GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED---LPRRRQLYSAN 392 (723)
T ss_dssp CSSS------------SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS---CTTCCEEEEEC
T ss_pred cCCC------------cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC---CCcceEEEEEe
Confidence 2100 0011344455 222220 22222 2333444 68999999998775332 12457888874
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-16 Score=176.67 Aligned_cols=251 Identities=13% Similarity=0.127 Sum_probs=186.3
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeecc-CCC-CeeEEEeeecCCCcEEE-Ee-cCCcEEEeccCCCCCCcceEec----
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTS-HQA-PVTLVQSHLSGETQLLL-SS-SSQDVHLWNASSIAGGPMHSFE---- 1593 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~g-Hss-~VtsLq~afSpDG~lLa-SS-sDgtVkLWDl~t~~gk~l~tf~---- 1593 (1922)
++|++++.+++|++||+.+++.+..+.. +.. .+..+ +|+|++++++ ++ .++.|.+||+.+ ++.+..+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVP--MVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCE--EECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccce--EEcCCCCEEEEEeCCCCeEEEEECCC--CCeEeeEEcCCc
Confidence 4799999999999999999988887753 322 47888 8899997654 44 478999999987 66665554
Q ss_pred -----cceeEEEcCCCCEEEEeecCC---------CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1594 -----GCKAARFSNSGNLFAALPTET---------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1594 -----gh~sVaFSPDG~~LaSgS~~S---------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
....++|+|+|++++++..+. .++.|.+||+.+++.+..+. .+.....++|+|+|+++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l 149 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------APRQITMLAWARDGSKL 149 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--------CCSSCCCEEECTTSSCE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--------CCCCcceeEECCCCCEE
Confidence 346799999999888873110 47999999999988877765 12334448899999977
Q ss_pred eecc---EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----------------------------EEEecCCC
Q 000177 1660 LWNG---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----------------------------EVWDLRKF 1707 (1922)
Q Consensus 1660 aSgg---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----------------------------eIWDLrTg 1707 (1922)
++++ .+||+.+++.+..+..+.....+.|+|+|.+++..+ .+||+.++
T Consensus 150 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 150 YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp EEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred EEeCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 6555 999999998887776554222347899988664433 48999988
Q ss_pred eEE-EEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEc
Q 000177 1708 RLL-RSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATE 1784 (1922)
Q Consensus 1708 klL-~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~S 1784 (1922)
+.. ..+..+.. ..++|+|+|++++++. ..+.+||..+.+.+..+.....+..++|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------------~~v~~~d~~~~~~~~~~~~~~~~~~~~~s 288 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAY---------------------NVLESFDLEKNASIKRVPLPHSYYSVNVS 288 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEE---------------------SEEEEEETTTTEEEEEEECSSCCCEEEEC
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEeC---------------------CeEEEEECCCCcCcceecCCCceeeEEEC
Confidence 765 12223332 6899999999999871 23567777777777777777788999999
Q ss_pred CCCceEEEEecCCCCCccceEEEEEec
Q 000177 1785 RTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1785 Pdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
|+++++.+.. .+..+++|++.
T Consensus 289 ~dg~~l~~~~------~~~~i~v~d~~ 309 (337)
T 1pby_B 289 TDGSTVWLGG------ALGDLAAYDAE 309 (337)
T ss_dssp TTSCEEEEES------BSSEEEEEETT
T ss_pred CCCCEEEEEc------CCCcEEEEECc
Confidence 9999888752 13678888764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-16 Score=195.14 Aligned_cols=271 Identities=11% Similarity=0.081 Sum_probs=196.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEecc--CCCCCCcceEec
Q 000177 1517 FLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNA--SSIAGGPMHSFE 1593 (1922)
Q Consensus 1517 FSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl--~t~~gk~l~tf~ 1593 (1922)
|+|++.++++++.|++|.+||..+++++.++..+.. +..+ .|+|||++|++ +.|++|.+||+ .+ ++++.++.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v--~~spdg~~l~v~~~d~~V~v~D~~~~t--~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHIS--RMSASGRYLLVIGRDARIDMIDLWAKE--PTKVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEE--EECTTSCEEEEEETTSEEEEEETTSSS--CEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceE--EECCCCCEEEEECCCCeEEEEECcCCC--CcEEEEEe
Confidence 889999999999999999999999999999973333 8888 89999999988 45899999999 66 66777765
Q ss_pred c---ceeEEEcC----CCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc---CC-CCcceEEEEcCCCCeEeec
Q 000177 1594 G---CKAARFSN----SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT---GR-GHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1594 g---h~sVaFSP----DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~---~~-gh~~~vVaFSPdG~lLaSg 1662 (1922)
. .++++|+| +|+++++++ ..+++|.+||..+++++.++........ .+ +.....+.|+|++..++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~--~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGA--YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEE--EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEE--ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 3 37899999 999999882 2479999999999999988862110000 00 1123448999988766533
Q ss_pred c------EEEEcCCCccee--eeccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcC----CCceeEE-
Q 000177 1663 G------ILWDRRNSVPVH--RFDQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPS----LDQTTIT- 1722 (1922)
Q Consensus 1663 g------rLWDlrtgk~I~--kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~g----H~~~sVa- 1722 (1922)
. .+||+.+.+.+. .+. +.... .+.|+|+|+++++++ .+||+.+++++.++.. |....+.
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred ECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 2 789988876544 443 33334 899999999877665 4999999999999884 5433333
Q ss_pred EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-------CceeeeeccC-CceEEEEEcCCCceEEEEe
Q 000177 1723 FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-------YSDIATIPVD-RCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1723 FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-------ys~IaTidvk-r~I~dLa~SPdds~LAVVe 1794 (1922)
++|++..++++... .+..+.+|+..+ ++.+.++... ..+..++++|+++++++..
T Consensus 377 ~~p~~g~~~~s~~~-----------------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 377 VHPKYGPVWSTSHL-----------------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EETTTEEEEEEEBS-----------------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CCCCCccEEEeccC-----------------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 47874444443211 123567777666 8888888875 4578899999999999753
Q ss_pred c-CCCCCccceEEEEEecC
Q 000177 1795 M-DDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1795 ~-dds~d~dSsVRLyEVGr 1812 (1922)
. ....+.+..|.+|++..
T Consensus 440 ~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TTCSSHHHHTCEEEEETTC
T ss_pred CCCCCcccCceEEEEECCC
Confidence 1 11011356899998753
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-16 Score=185.13 Aligned_cols=227 Identities=12% Similarity=0.162 Sum_probs=155.0
Q ss_pred CceeeEEecCCCCCC---EEEEEEcCCCC---EEEEEeCCCcEEEEECCCC---CceeeeccCCCCeeEEEe--------
Q 000177 1497 RFRPWRTCRDDAGAL---LTCITFLGDSS---HIAVGSHTKELKIFDSNSS---SPLESCTSHQAPVTLVQS-------- 1559 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~---Vt~LaFSPDG~---lLASGS~DGtIkIWDl~tg---k~l~tL~gHss~VtsLq~-------- 1559 (1922)
+++.+..|+.-.++. +.++-|-.-|- .|++++ ..+|++|+..++ +.++++.+|..+|..|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 345566666544233 34444544322 455555 568999999988 778888888876655411
Q ss_pred ---------------eecCC----CcEEEE-e-----------------c---CCcEEEeccCCCCCCcceEeccc----
Q 000177 1560 ---------------HLSGE----TQLLLS-S-----------------S---SQDVHLWNASSIAGGPMHSFEGC---- 1595 (1922)
Q Consensus 1560 ---------------afSpD----G~lLaS-S-----------------s---DgtVkLWDl~t~~gk~l~tf~gh---- 1595 (1922)
+++|| ++++++ | . |++|++|++.. .++.+.++.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~-dG~~~~s~~~~~~~v 181 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE-DGGGKENQFLMPPEE 181 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT-TSCEEEEEEECCCSS
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC-CCceeeeeccCCCce
Confidence 55667 666654 1 2 78888888843 25555555544
Q ss_pred eeEEEcC---CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC--cceEEEEcCCCCeEe----------
Q 000177 1596 KAARFSN---SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH--AYSQIHFSPSDTMLL---------- 1660 (1922)
Q Consensus 1596 ~sVaFSP---DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh--~~~vVaFSPdG~lLa---------- 1660 (1922)
+.++|+| ++.+|+++ +.|++|+|||+.+|+++.++.. .+.+ ....++|+|+|.+++
T Consensus 182 ~~l~fs~~~g~~~~LaSg---S~D~TIkIWDl~TGk~l~tL~g------~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~ 252 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGT---TIMNNIVIWNLKTGQLLKKMHI------DDSYQASVCHKAYSEMGLLFIVLSHPCAKES 252 (356)
T ss_dssp CEEEEEEEETSTTEEEEE---ETTSEEEEEETTTCCEEEEEEC------CC---CCCEEEEEEETTEEEEEEC-------
T ss_pred eeEEeeccCCCCceEEEe---cCCCcEEEEECCCCcEEEEEcC------CCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence 6788888 67999999 8999999999999999999861 1111 233478999999874
Q ss_pred --ecc-----EEEEcCCCcceeee-----ccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---ee
Q 000177 1661 --WNG-----ILWDRRNSVPVHRF-----DQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TT 1720 (1922)
Q Consensus 1661 --Sgg-----rLWDlrtgk~I~kf-----~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~s 1720 (1922)
+++ ++||..+++.+..+ ++|...+ +..+.++.++++++ +|||+.++++++++.+|.. .+
T Consensus 253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~-lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF-LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCE-EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred eeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee-EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 333 89999999887765 3555443 23333488899988 6999999999999998865 36
Q ss_pred EEEccCCCEEEEEEc
Q 000177 1721 ITFNARGDVIYAILR 1735 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~ 1735 (1922)
++|||+|++|++++.
T Consensus 332 vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 332 VKWSGTDSHLLAGQK 346 (356)
T ss_dssp EEECSSSSEEEEECT
T ss_pred EEECCCCCEEEEEEC
Confidence 899999999999953
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=194.37 Aligned_cols=275 Identities=12% Similarity=0.067 Sum_probs=187.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCC---CC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSI---AG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~---~g 1586 (1922)
..|++++|||| ++++.+ .+++|++||+.+++.. .+..|...+.++ .|||||++|+++.++.|++||+.+. .+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~--~~SpdG~~la~~~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASL--DFSPVGDRVAYVRNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTC--EECTTSSEEEEEETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCC--cCCCCCCEEEEEECCeEEEEecCcccccCC
Confidence 35999999999 665555 4599999999887654 445567778888 8899999999988999999999750 01
Q ss_pred CcceEec---c---------------ceeEEEcCCCCEEEEeecC------------------------------CCCCe
Q 000177 1587 GPMHSFE---G---------------CKAARFSNSGNLFAALPTE------------------------------TSDRG 1618 (1922)
Q Consensus 1587 k~l~tf~---g---------------h~sVaFSPDG~~LaSgS~~------------------------------S~Dgt 1618 (1922)
+...... . ..++.|+|||++|++++.+ ..+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 2222111 1 2689999999999998421 14578
Q ss_pred EEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeec--cCCC---c
Q 000177 1619 ILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFD--QFTD---H 1683 (1922)
Q Consensus 1619 IrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~--gh~~---~ 1683 (1922)
|++||+.+++...... ...+......++|+|+|++|++.+ .+||+.+++.+..+. .+.. .
T Consensus 237 l~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQT-----GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEEETTTTEEEECCC-----CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEEEECCCCceEeecc-----CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 9999999887654332 001223344599999999888632 799999984433332 1222 1
Q ss_pred e-EEEEec--CCCEEEEEe-----EEEecC-CCeEEEEEcCCCc--ee-EEEccCCCEEEEEEccCchhhhhhhcccccc
Q 000177 1684 G-GGGFHP--AGNEVIINS-----EVWDLR-KFRLLRSVPSLDQ--TT-ITFNARGDVIYAILRRNLEDVMSAVHTRRVK 1751 (1922)
Q Consensus 1684 V-sVaFSP--dG~~LASGS-----eIWDLr-TgklL~tl~gH~~--~s-VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~k 1751 (1922)
+ .+.|+| +|++|++++ +||.+. +++.+..+..+.. .. ++|+|+|+.|+.+...+.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~------------- 378 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS------------- 378 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC-------------
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC-------------
Confidence 2 689999 999988876 599886 6777788876654 34 899999999887743321
Q ss_pred cCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1752 HPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1752 sp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+....+..++..+.. +..+.....+..++|+|+++++++...+.. .-..+.+|++.
T Consensus 379 -~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~p~~i~l~d~~ 434 (706)
T 2z3z_A 379 -PLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPT--VPRKVTVTNIG 434 (706)
T ss_dssp -TTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSS--CSCEEEEEESS
T ss_pred -CceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCC--CCcEEEEEECC
Confidence 112234455544332 333334556899999999999887753332 22567888764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-16 Score=198.02 Aligned_cols=279 Identities=10% Similarity=0.062 Sum_probs=182.1
Q ss_pred ecCceeeEEecCCCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCceeee---ccCCCCeeEEEe
Q 000177 1495 YSRFRPWRTCRDDAGA---LLTCITFLGDSSHIAVGSHT---------KELKIFDSNSSSPLESC---TSHQAPVTLVQS 1559 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~---~Vt~LaFSPDG~lLASGS~D---------GtIkIWDl~tgk~l~tL---~gHss~VtsLq~ 1559 (1922)
....+....+.+|. . .|++++|||||++|++++.+ +.|.+||+.+++. ..+ .+|...|..+
T Consensus 44 ~~~g~~~~~~~~~~-~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~-- 119 (723)
T 1xfd_A 44 VETNTSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYA-- 119 (723)
T ss_dssp GGGCCCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBC--
T ss_pred CCCCcEEEEecccc-ccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcccccccccc--
Confidence 34455566676666 4 49999999999999999875 7888999998876 333 4555668888
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----c------------------eeEEEcCCCCEEEEeecCCC--
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----C------------------KAARFSNSGNLFAALPTETS-- 1615 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h------------------~sVaFSPDG~~LaSgS~~S~-- 1615 (1922)
.|||||+.|+++++++|++||+.+ ++....... + .++.|+|||++|++++.+..
T Consensus 120 ~~SPdG~~la~~~~~~i~~~~~~~--g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 120 GWGPKGQQLIFIFENNIYYCAHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV 197 (723)
T ss_dssp CBCSSTTCEEEEETTEEEEESSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred EECCCCCEEEEEECCeEEEEECCC--CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc
Confidence 899999999998889999999987 555443322 1 57999999999998843210
Q ss_pred -----------------------------CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc---
Q 000177 1616 -----------------------------DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--- 1663 (1922)
Q Consensus 1616 -----------------------------DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--- 1663 (1922)
+..|++||+.+++....+..+... ..+......++|+|||+++++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~ 276 (723)
T 1xfd_A 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP-RMREYYITMVKWATSTKVAVTWLNRA 276 (723)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG-GGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC-CCccceeEEEEEeCCCeEEEEEEcCC
Confidence 227999999998865555411100 00122334499999999886432
Q ss_pred ------EEEEcCCCcceeeeccC-CCc-----eEEEEecCCCEEEEE-e----------EE--Ee-cCCCe--EEEEEcC
Q 000177 1664 ------ILWDRRNSVPVHRFDQF-TDH-----GGGGFHPAGNEVIIN-S----------EV--WD-LRKFR--LLRSVPS 1715 (1922)
Q Consensus 1664 ------rLWDlrtgk~I~kf~gh-~~~-----VsVaFSPdG~~LASG-S----------eI--WD-LrTgk--lL~tl~g 1715 (1922)
.+||+.++++...+..+ ... ..+.|+|||+.|+.. + +| || ..+++ +...+..
T Consensus 277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 79999999876665433 222 268999999977754 2 24 55 23333 1444442
Q ss_pred -CCc-e-eEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec----cCCceEEEEEcCCCc
Q 000177 1716 -LDQ-T-TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP----VDRCVLDFATERTDS 1788 (1922)
Q Consensus 1716 -H~~-~-sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid----vkr~I~dLa~SPdds 1788 (1922)
+.. . .++|+|+|+.|+.....+. +....+..++.........+. ....+..++|+|+++
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLSTEDL--------------PRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESSSC--------------TTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred CCeEEEeeeEEcCCCCEEEEEEcCCC--------------CcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCC
Confidence 222 2 4799999999987643320 000111122211111111121 134578999999999
Q ss_pred eEEEEe
Q 000177 1789 FVGLIT 1794 (1922)
Q Consensus 1789 ~LAVVe 1794 (1922)
++++..
T Consensus 423 ~l~~~~ 428 (723)
T 1xfd_A 423 FFLLKC 428 (723)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 988764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-15 Score=172.46 Aligned_cols=229 Identities=10% Similarity=0.151 Sum_probs=175.3
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCC---------eeEEEeeecCC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAP---------VTLVQSHLSGE 1564 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~---------VtsLq~afSpD 1564 (1922)
...++.++.+... ..+..++|+|+|++++ ++..++.|.+||..+++.+..+..+... +.++ .|+|+
T Consensus 76 ~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~d 151 (353)
T 3vgz_A 76 PVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL--VADDA 151 (353)
T ss_dssp TTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE--EEETT
T ss_pred CCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE--EECCC
Confidence 3455666666543 3477899999999655 5556799999999999988888655432 6778 88999
Q ss_pred CcEEEEe---cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1565 TQLLLSS---SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1565 G~lLaSS---sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
+++++.+ .++.|.+||..+ ++.+..+.. ..+++|+|++++++++ ..++.|.+||+.+++.+..+...
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~~~i~~~d~~~~~~~~~~~~~- 225 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGGN--IKLKTAIQNTGKMSTGLALDSEGKRLYTT---NADGELITIDTADNKILSRKKLL- 225 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETTT--TEEEEEECCCCTTCCCCEEETTTTEEEEE---CTTSEEEEEETTTTEEEEEEECC-
T ss_pred CCEEEEEecCCCceEEEEcCCC--CceEEEecCCCCccceEEECCCCCEEEEE---cCCCeEEEEECCCCeEEEEEEcC-
Confidence 9877663 378899999987 666766652 3789999999999888 66899999999999988777511
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe------EEEecC
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLR 1705 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLr 1705 (1922)
.....+....++|+|+|++++..+ .+||+.+++.+..+.... ...+.|+|+|+++++++ .+||+.
T Consensus 226 --~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 226 --DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp --CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred --CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 111233344599999999766433 899999999888887543 35799999999766555 499999
Q ss_pred CCeEEEEEcCCCc-eeEEEccCCCEEEEEEcc
Q 000177 1706 KFRLLRSVPSLDQ-TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1706 TgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~ 1736 (1922)
+++.+..+..... ..++|+|+|++|+.+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 303 SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 9999998886554 899999999988887543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=166.80 Aligned_cols=251 Identities=12% Similarity=0.047 Sum_probs=171.2
Q ss_pred EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc-----ceeEEE
Q 000177 1526 VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG-----CKAARF 1600 (1922)
Q Consensus 1526 SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g-----h~sVaF 1600 (1922)
+++.|++|++||+.+++.. .+..|...|.++ .|+|++++|+++.++.|++||+.+. +++...+.. +.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~--~~spdg~~l~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAP--NWSPDGKYLLLNSEGLLYRLSLAGD-PSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEE--EECTTSSEEEEEETTEEEEEESSSC-CSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEee--EECCCCCEEEEEcCCeEEEEeCCCC-CCceEeccccccccccceEE
Confidence 4568899999999887765 556689999999 8999999999988999999999751 233333322 367999
Q ss_pred cCCCCEEEEeecCC-CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ecc-----EEEEcCC-Cc
Q 000177 1601 SNSGNLFAALPTET-SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRN-SV 1672 (1922)
Q Consensus 1601 SPDG~~LaSgS~~S-~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrt-gk 1672 (1922)
+|++++|++++... ....|.+||+.+++. ..+. .......++|+|++++|+ +++ +||++.. +.
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~--------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT--------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC--------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee--------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 99999999983211 134455555555543 3332 122345589999999887 333 7998653 33
Q ss_pred ceeeeccCCCce-EEEEecCCCEEEEEe------EEEecC-CCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhh
Q 000177 1673 PVHRFDQFTDHG-GGGFHPAGNEVIINS------EVWDLR-KFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1673 ~I~kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLr-TgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
....+..+...+ ++.|+|+|++|+.++ +||++. .+..+..+..+.. ..+.|+|+|++|+++..+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~- 242 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD- 242 (297)
T ss_dssp CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS-
T ss_pred cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc-
Confidence 455666666666 899999999888665 599886 4566677776655 68999999999988754321100
Q ss_pred hhhcccccccCCcceEEEEecCCCce--eeee-ccCCceEEEEEcCCCceEEEEecCC
Q 000177 1743 SAVHTRRVKHPLFAAFRTVDAINYSD--IATI-PVDRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1743 s~lh~rr~ksp~~ssFrt~Da~dys~--IaTi-dvkr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
........+.+|+..+... +... .....+..++|+|++.+|+++..++
T Consensus 243 -------~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 -------HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -------CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -------ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 0000124567777655443 3332 2345688899999999998876443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-15 Score=169.85 Aligned_cols=227 Identities=15% Similarity=0.182 Sum_probs=154.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCCc--eeeeccCCCCeeEEEeeecCCCcEEEE-ec
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHT-KELKIFDSN--SSSP--LESCTSHQAPVTLVQSHLSGETQLLLS-SS 1572 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~D-GtIkIWDl~--tgk~--l~tL~gHss~VtsLq~afSpDG~lLaS-Ss 1572 (1922)
+.+..+ .|. ..+.+++|+|+|++|++++.+ +.|++|++. +++. +..+..+. .+..+ +|+|++++|++ +.
T Consensus 29 ~~~~~~-~~~-~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~dg~~l~~~~~ 103 (343)
T 1ri6_A 29 TLTQVV-DVP-GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI--STDHQGQFVFVGSY 103 (343)
T ss_dssp EEEEEE-ECS-SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE--EECTTSSEEEEEET
T ss_pred EEeeeE-ecC-CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE--EEcCCCCEEEEEec
Confidence 334433 465 678999999999999998887 999999997 5553 34455444 78888 88999997765 44
Q ss_pred -CCcEEEeccCCC-CCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCc
Q 000177 1573 -SQDVHLWNASSI-AGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1573 -DgtVkLWDl~t~-~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++.|.+||+... ....+..+.. ..+++|+|+++++++++ ..++.|++||+.+ ++...... ... ....+..
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~-~~~-~~~~~~~ 179 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTVSDDGHLVAQDP-AEV-TTVEGAG 179 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEE-EEE-ECSTTCC
T ss_pred CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec--CCCCEEEEEEecCCCceeeecc-ccc-ccCCCCC
Confidence 889999999420 0233444433 47899999999888772 3679999999987 65432210 000 0011233
Q ss_pred ceEEEEcCCCCeEe-ecc-----EEEEcCC--Ccc--eeeeccC----C--Cce-EEEEecCCCEEEEEe------EEEe
Q 000177 1647 YSQIHFSPSDTMLL-WNG-----ILWDRRN--SVP--VHRFDQF----T--DHG-GGGFHPAGNEVIINS------EVWD 1703 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLa-Sgg-----rLWDlrt--gk~--I~kf~gh----~--~~V-sVaFSPdG~~LASGS------eIWD 1703 (1922)
...++|+|++++++ ++. .+||+.. ++. +..+... . ..+ .++|+|+|++|+++. .+||
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 44599999999665 332 8999953 433 2233211 1 123 799999999887544 4999
Q ss_pred cC----CCeEEEEEcCCC-ceeEEEccCCCEEEEEE
Q 000177 1704 LR----KFRLLRSVPSLD-QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1704 Lr----TgklL~tl~gH~-~~sVaFSPdG~~LaSgs 1734 (1922)
+. +.+.+..+..+. ...++|+|+|++|+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 260 VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp ECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred EcCCCCceEEeeeecCCCccceEEECCCCCEEEEec
Confidence 98 345666666443 37999999999999884
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-15 Score=168.71 Aligned_cols=254 Identities=11% Similarity=0.155 Sum_probs=166.6
Q ss_pred EEEEEeCCCcEEEEECCC-CCce-eeeccCCCCeeEEEeeecCCCcEEEEe-c-CCcEEEeccCCCCCC--cceEec---
Q 000177 1523 HIAVGSHTKELKIFDSNS-SSPL-ESCTSHQAPVTLVQSHLSGETQLLLSS-S-SQDVHLWNASSIAGG--PMHSFE--- 1593 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~t-gk~l-~tL~gHss~VtsLq~afSpDG~lLaSS-s-DgtVkLWDl~t~~gk--~l~tf~--- 1593 (1922)
++++++.|+.|++|++.. ++.. .....|...+.++ +|+|++++|+++ . ++.|.+|++....+. .+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceE--EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 444557899999999963 3321 2224577788999 889999977774 4 489999999721133 233333
Q ss_pred cceeEEEcCCCCEEEEeecCCCCCeEEEEECC---CCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------E
Q 000177 1594 GCKAARFSNSGNLFAALPTETSDRGILLYDIQ---TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------I 1664 (1922)
Q Consensus 1594 gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr---Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------r 1664 (1922)
....++|+|+++++++++ ..++.|.+||+. +++.+..+. .......++|+|+|+++++++ .
T Consensus 85 ~~~~~~~s~dg~~l~~~~--~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDVVE--------GLDGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp CCSEEEECTTSSEEEEEE--TTTTEEEEEEEETTEEEEEEEEEC--------CCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred CCcEEEEcCCCCEEEEEe--cCCCeEEEEECCCCcccccccccc--------CCCCceEEEECCCCCEEEEecCCCCEEE
Confidence 247899999999887662 457899999994 444444443 122344489999998776543 8
Q ss_pred EEEcCC-Cccee----eeccCC-Cce-EEEEecCCCEEEEEe------EEEecCC--CeE--EEEEc----CCC----ce
Q 000177 1665 LWDRRN-SVPVH----RFDQFT-DHG-GGGFHPAGNEVIINS------EVWDLRK--FRL--LRSVP----SLD----QT 1719 (1922)
Q Consensus 1665 LWDlrt-gk~I~----kf~gh~-~~V-sVaFSPdG~~LASGS------eIWDLrT--gkl--L~tl~----gH~----~~ 1719 (1922)
+||+.+ ++... .+..+. ..+ .++|+|+|+++++++ .+|++.. ++. +..+. ++. ..
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 999987 65432 222222 233 899999999876654 4999953 432 33333 111 14
Q ss_pred eEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC----CCceeeeeccCCceEEEEEcCCCceEEEEec
Q 000177 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI----NYSDIATIPVDRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1720 sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~----dys~IaTidvkr~I~dLa~SPdds~LAVVe~ 1795 (1922)
.++|+|+|++|+++...+ ..+.+|+.. ....+..+.....+..++|+|+++++.+...
T Consensus 235 ~i~~s~dg~~l~v~~~~~------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTA------------------SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp EEEECTTSSEEEEEETTT------------------TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred ceEECCCCCEEEEEecCC------------------CEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence 799999999998764222 234555543 3445555555555889999999998887642
Q ss_pred CCCCCccceEEEEEec
Q 000177 1796 DDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1796 dds~d~dSsVRLyEVG 1811 (1922)
.+..+.+|++.
T Consensus 297 -----~~~~v~v~~~d 307 (343)
T 1ri6_A 297 -----KSHHISVYEIV 307 (343)
T ss_dssp -----TTCEEEEEEEE
T ss_pred -----CCCeEEEEEEc
Confidence 23678888663
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-15 Score=168.52 Aligned_cols=243 Identities=13% Similarity=0.091 Sum_probs=175.5
Q ss_pred ecCceeeEEecC-CCCC-CEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeecc-C----CCCeeEEEeeecCCCc
Q 000177 1495 YSRFRPWRTCRD-DAGA-LLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTS-H----QAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1495 ~srfrpirtLrg-H~d~-~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~g-H----ss~VtsLq~afSpDG~ 1566 (1922)
...++.++.+.. +. . .+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+.. + ...+..+ .|+|+|+
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~ 94 (337)
T 1pby_B 18 TEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA--ALSPDGK 94 (337)
T ss_dssp TTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE--EECTTSS
T ss_pred CCCCcEEEEEEcCCC-CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccce--EECCCCC
Confidence 445566666653 32 2 47899999999866 5566688999999999988877642 2 2257788 8899998
Q ss_pred EEEEe-------------cCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee
Q 000177 1567 LLLSS-------------SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1567 lLaSS-------------sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
+|+++ .++.|.+||+.+ ++.+..+.. ..+++|+|++++++++ ++.|.+||+.+++.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 95 TLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEAPRQITMLAWARDGSKLYGL-----GRDLHVMDPEAGTLV 167 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEECCSSCCCEEECTTSSCEEEE-----SSSEEEEETTTTEEE
T ss_pred EEEEEecccccccccccccCceEEEEECCC--CcEEEEEeCCCCcceeEECCCCCEEEEe-----CCeEEEEECCCCcEe
Confidence 88775 479999999987 666655542 4779999999988886 367999999999887
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEeecc-----------------------------EEEEcCCCcce-eeeccC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----------------------------ILWDRRNSVPV-HRFDQF 1680 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----------------------------rLWDlrtgk~I-~kf~gh 1680 (1922)
..+.. +.....+.|+|+|..++..+ .+||+.+++.. ..+..+
T Consensus 168 ~~~~~--------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 168 EDKPI--------QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp EEECS--------TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred eeeec--------cccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 77651 11011237889888665432 58999888764 223334
Q ss_pred CCce-EEEEecCCCEEEEEe---EEEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCc
Q 000177 1681 TDHG-GGGFHPAGNEVIINS---EVWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLF 1755 (1922)
Q Consensus 1681 ~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ 1755 (1922)
...+ ++.|+|+|++++++. .+||+.+++.+..+.... ..+++|+|+|++|+++.. .
T Consensus 240 ~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------------------~ 300 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA-------------------L 300 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB-------------------S
T ss_pred CCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC-------------------C
Confidence 4344 899999999988876 499999999988887443 389999999999998731 2
Q ss_pred ceEEEEecCCCceeeeecc
Q 000177 1756 AAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1756 ssFrt~Da~dys~IaTidv 1774 (1922)
..+.+|+..+.+.+..+..
T Consensus 301 ~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 301 GDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEECcCCcEEEEEEc
Confidence 3466777666665555443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-15 Score=171.12 Aligned_cols=233 Identities=10% Similarity=0.067 Sum_probs=167.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCC-CCeeEEEeeecCCCcEEE-Ee-cCCcEEEeccCCCCCCcce
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQ-APVTLVQSHLSGETQLLL-SS-SSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHs-s~VtsLq~afSpDG~lLa-SS-sDgtVkLWDl~t~~gk~l~ 1590 (1922)
.++|++++.++++++.+++|++||+.+++.+.++..+. ..+..+ .|+|++++++ ++ .++.|.+||+.+ ++.+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTA--MMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEE--EECTTSSEEEEEETTTTEEEEEETTT--TEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCcee--EECCCCCEEEEEeCCCCcEEEEeCCC--CcEEE
Confidence 45788899999999999999999999999888886543 257788 7899998654 44 488999999987 66655
Q ss_pred Eecc----------ceeEEEcCCCCEEEEeecC---------CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1591 SFEG----------CKAARFSNSGNLFAALPTE---------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1591 tf~g----------h~sVaFSPDG~~LaSgS~~---------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
.+.. ...++|+|+|+++++++.+ ..++.|.+||+.+++....+.. .. .......++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~---~~~~~~~~~ 154 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--FP---MPRQVYLMR 154 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--EE---CCSSCCCEE
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--cc---CCCccccee
Confidence 5432 4789999999999988311 1138999999998654332210 00 112234488
Q ss_pred EcCCCCeEeecc--EEEEcCCCcceeeeccCC------------------------------------------------
Q 000177 1652 FSPSDTMLLWNG--ILWDRRNSVPVHRFDQFT------------------------------------------------ 1681 (1922)
Q Consensus 1652 FSPdG~lLaSgg--rLWDlrtgk~I~kf~gh~------------------------------------------------ 1681 (1922)
|+|+|++++.+. .+||+.+++.+..+....
T Consensus 155 ~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 155 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp ECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred ECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999999555444 899999988776664331
Q ss_pred --------------------Cce-EEEEec-CCCEEEEEe---EEEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEEc
Q 000177 1682 --------------------DHG-GGGFHP-AGNEVIINS---EVWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1682 --------------------~~V-sVaFSP-dG~~LASGS---eIWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs~ 1735 (1922)
... +++|+| +|++++++. .+||+.+++.+..+... ...+++|+|+|++|+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~- 313 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG- 313 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES-
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEEcCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec-
Confidence 011 567779 999888874 48999999998888643 347999999999888862
Q ss_pred cCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1736 RNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1736 ~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
....+.+||..+.+.+..+..
T Consensus 314 ------------------~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 314 ------------------TFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ------------------BSSEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCCeEEEEeccccceeeeeec
Confidence 123467777776666665544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.3e-15 Score=183.31 Aligned_cols=243 Identities=9% Similarity=0.004 Sum_probs=166.0
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceeeeccCC-CCeeEEEeeecCCCcEEEEec----CCcEEEeccCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSH-TKELKIFDSNSSSPLESCTSHQ-APVTLVQSHLSGETQLLLSSS----SQDVHLWNASS 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~l~tL~gHs-s~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t 1583 (1922)
.+|++++|+|||++||+++. ||+++||++.+++. ..+..|. ..|..+ .|+|| +++++++ +....||.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~--~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDP--HYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEE--CTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eeeecccccccccc--cCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 67999999999999999887 99999999966554 4454454 689999 88999 7777643 34556665532
Q ss_pred --CCCC-cceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1584 --IAGG-PMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1584 --~~gk-~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
.... .+....++...+|+|+|+.++..+. ..++ +.+||+.+++...... +....++|+|||++|+
T Consensus 98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~-~~~~-~~l~d~~~g~~~~l~~----------~~~~~~~~spDG~~la 165 (582)
T 3o4h_A 98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGA-TEDR-VALYALDGGGLRELAR----------LPGFGFVSDIRGDLIA 165 (582)
T ss_dssp TSTTCCEECTTSCSBEEEEEEECSSCEEEEEE-CSSC-EEEEEEETTEEEEEEE----------ESSCEEEEEEETTEEE
T ss_pred cCCCccccccCCCCceeeeeCCCCCeEEEEec-CCCC-ceEEEccCCcEEEeec----------CCCceEEECCCCCEEE
Confidence 1111 1222334567789999864333211 3444 5599999987655443 2226699999999999
Q ss_pred ecc---------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-------EEEecCCCeEEEEEcCCCc--eeE
Q 000177 1661 WNG---------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-------EVWDLRKFRLLRSVPSLDQ--TTI 1721 (1922)
Q Consensus 1661 Sgg---------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-------eIWDLrTgklL~tl~gH~~--~sV 1721 (1922)
+.+ ++||+.+++.. .+..+...+ .++|||||++|+++. .+||+.+++.. .+.+|.. ..+
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~ 243 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSY 243 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHH
T ss_pred EEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhh
Confidence 544 78999888754 667777666 999999999999655 38999998877 6666654 456
Q ss_pred E--------EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEE
Q 000177 1722 T--------FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1722 a--------FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVV 1793 (1922)
. |+|+|.+++++..+.. .++|+. .+.+. .....+..++++ +++.++..
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~-------------------~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~ 299 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGR-------------------SAVFID--GERVE--APQGNHGRVVLW-RGKLVTSH 299 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTE-------------------EEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEE
T ss_pred hhccccceeEcCCCcEEEEEEcCCc-------------------EEEEEE--CCeec--cCCCceEEEEec-CCEEEEEE
Confidence 6 9999977777643332 222322 11111 122457788999 78777654
Q ss_pred e
Q 000177 1794 T 1794 (1922)
Q Consensus 1794 e 1794 (1922)
.
T Consensus 300 s 300 (582)
T 3o4h_A 300 T 300 (582)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=191.20 Aligned_cols=266 Identities=13% Similarity=0.122 Sum_probs=194.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVk 1577 (1922)
...+.+.+|. ..+.++.|+++ .++++++.|++++||.+.. +.....+..|. .+..+ .|+|||++|+++.++.|+
T Consensus 194 ~~~~~l~~~~-~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~--~~SpDG~~la~~~~~~i~ 268 (1045)
T 1k32_A 194 GAFKKIVDMS-THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPR--HLNTDGRRILFSKGGSIY 268 (1045)
T ss_dssp TEEEEEECCS-SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEE--EEEESSSCEEEEETTEEE
T ss_pred CCeEECcCCC-CcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cccee--eEcCCCCEEEEEeCCEEE
Confidence 3455568899 99999999998 7778888999999998754 45556676665 46677 789999999998899999
Q ss_pred EeccCCCCCCcceEecc---------------ceeEEEc-CCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1578 LWNASSIAGGPMHSFEG---------------CKAARFS-NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g---------------h~sVaFS-PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
+||+.. ..+..+.+ +.+++|+ |+|++|+++ + ++.|++||+.++.... +.
T Consensus 269 ~~d~~~---~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~---~-~~~i~~~~~~~~~~~~-~~------- 333 (1045)
T 1k32_A 269 IFNPDT---EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV---S-RGQAFIQDVSGTYVLK-VP------- 333 (1045)
T ss_dssp EECTTT---CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE---E-TTEEEEECTTSSBEEE-CS-------
T ss_pred EecCCc---eEeeeeccCcccccccccccccccceeeecCCCCCEEEEE---E-cCEEEEEcCCCCceEE-cc-------
Confidence 999843 33434443 5789999 999999987 3 6889999998876543 32
Q ss_pred CCCC-cceEEEEcCCCCeEeecc-----E-EEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1642 GRGH-AYSQIHFSPSDTMLLWNG-----I-LWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1642 ~~gh-~~~vVaFSPdG~lLaSgg-----r-LWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
.+.. ....++|+ +|+.|++.+ . +||+.+++.. .+.++...+ .++|+|+|++|++++ .+||+.+++
T Consensus 334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 411 (1045)
T ss_dssp CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence 0111 33448999 998888755 4 5688776544 444665666 899999999999887 499999999
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
....+.+|.. ..++|||+|++|+++.....-.. .......+++||..+............+..++|+|+
T Consensus 412 ~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~---------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 412 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGET---------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT---------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred eEEeccCCCCCccceEECCCCCeEEEEecCccccc---------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCC
Confidence 8887766655 79999999999987743210000 001234677888766553322333456888999999
Q ss_pred CceEEEEec
Q 000177 1787 DSFVGLITM 1795 (1922)
Q Consensus 1787 ds~LAVVe~ 1795 (1922)
|+++++...
T Consensus 483 G~~l~~~s~ 491 (1045)
T 1k32_A 483 SKNLYYLSY 491 (1045)
T ss_dssp SCEEEEEES
T ss_pred CCEEEEEec
Confidence 999987753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-15 Score=190.52 Aligned_cols=271 Identities=11% Similarity=0.077 Sum_probs=176.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCC---CeeEEEeeecCCCcEEEEec----------CCcEEEec
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQA---PVTLVQSHLSGETQLLLSSS----------SQDVHLWN 1580 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss---~VtsLq~afSpDG~lLaSSs----------DgtVkLWD 1580 (1922)
.++|+|||+++++ +.|++|++||+.+++....+.+|.. .|.++ +|||||++|++++ +++|++||
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNY--GLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEE--EECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeE--EECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 6799999965555 4699999999999998777776644 48888 8999999998753 58999999
Q ss_pred cCCCCCCcc--eEe-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-----------
Q 000177 1581 ASSIAGGPM--HSF-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA----------- 1646 (1922)
Q Consensus 1581 l~t~~gk~l--~tf-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~----------- 1646 (1922)
+.+ ++.+ ..+ .....++|||||++|+++ .++.|++||+.+++......+........|+.
T Consensus 97 ~~~--g~~~~~~~l~~~~~~~~~SPDG~~la~~----~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 97 LSN--GEFVRGNELPRPIQYLCWSPVGSKLAYV----YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp TTT--TEECCSSCCCSSBCCEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred CCC--CccccceecCcccccceECCCCCEEEEE----ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 987 5441 223 346889999999999997 36799999999887754332110000000111
Q ss_pred ceEEEEcCCCCeEeecc---------------------------------------EEEEcCCCcce--------eeecc
Q 000177 1647 YSQIHFSPSDTMLLWNG---------------------------------------ILWDRRNSVPV--------HRFDQ 1679 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg---------------------------------------rLWDlrtgk~I--------~kf~g 1679 (1922)
...++|||||++|++.+ ++||+.+++.+ ..+.+
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 13599999999998543 48999887653 22345
Q ss_pred CCCce-EEEEecCCCEEEEEe---------EEEe----cCCCeEEEEE----cCCCc--e-----eEEEccCCCEEEEE-
Q 000177 1680 FTDHG-GGGFHPAGNEVIINS---------EVWD----LRKFRLLRSV----PSLDQ--T-----TITFNARGDVIYAI- 1733 (1922)
Q Consensus 1680 h~~~V-sVaFSPdG~~LASGS---------eIWD----LrTgklL~tl----~gH~~--~-----sVaFSPdG~~LaSg- 1733 (1922)
+...+ +++|+|||+++++.. .+|| +.++++...+ .+|.. . .+.|+|+|+.|+..
T Consensus 251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 66666 899999988777743 2678 7777655444 24443 3 78999999977653
Q ss_pred EccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1734 LRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1734 s~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
...+. ...+..++..+............+..+.+. ++..++...... .......++|.+.
T Consensus 331 ~~~~g----------------~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~-~~~~~~~~l~~~~ 390 (719)
T 1z68_A 331 SDKDG----------------YKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEF-EEYPGRRNIYRIS 390 (719)
T ss_dssp ECTTS----------------CEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCG-GGCTTCBEEEEEE
T ss_pred EccCC----------------ceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecC-CCCCceEEEEEEe
Confidence 22221 112344443332221111223346666666 777777665330 0112456777764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-14 Score=163.59 Aligned_cols=218 Identities=9% Similarity=0.172 Sum_probs=148.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEE-e-cCCcEEE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSH---TKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLS-S-SSQDVHL 1578 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~---DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaS-S-sDgtVkL 1578 (1922)
.+. ..+..++|+|||+ |++++. ++.|++|++.+++ .+..+..|...+..+ +|+|||++|++ + .+++|.+
T Consensus 37 ~~~-~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~--a~spdg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AAT-QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV--AVDEARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EEC-SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE--EEETTTTEEEEEETTTTEEEE
T ss_pred ecc-CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE--EECCCCCEEEEEeCCCCEEEE
Confidence 444 5678899999999 555554 6899999997765 344555677888999 89999997777 4 4789999
Q ss_pred eccCCCCCC--cceEecc-------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECC-CCceeeeeccccccccC
Q 000177 1579 WNASSIAGG--PMHSFEG-------------CKAARFSNSGNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1579 WDl~t~~gk--~l~tf~g-------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~ 1642 (1922)
|++.. .+. .+..+.. ..+++|+|+|+.+++. ..++.|++||+. +++...... . ...
T Consensus 113 ~~~~~-~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~---~~~~~v~~~~~~~~g~~~~~~~-~---~~~ 184 (347)
T 3hfq_A 113 MKIAA-DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID---LGSDKVYVYNVSDAGQLSEQSV-L---TME 184 (347)
T ss_dssp EEECT-TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE---TTTTEEEEEEECTTSCEEEEEE-E---ECC
T ss_pred EEeCC-CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe---CCCCEEEEEEECCCCcEEEeee-E---EcC
Confidence 99963 122 2222211 3569999999955554 667899999998 554332111 0 001
Q ss_pred CCCcceEEEEcCCCCeEeecc------EEEEcCC--Ccc--eeeeccCC------Cce-EEEEecCCCEEEEEe------
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG------ILWDRRN--SVP--VHRFDQFT------DHG-GGGFHPAGNEVIINS------ 1699 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg------rLWDlrt--gk~--I~kf~gh~------~~V-sVaFSPdG~~LASGS------ 1699 (1922)
.+.....++|+|+|++++..+ .+|++.. ++. +..+.... ... .++|+|+|++|++..
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v 264 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL 264 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence 122334499999999666432 7999874 442 33333322 223 799999999885544
Q ss_pred EEEecC---CCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1700 EVWDLR---KFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1700 eIWDLr---TgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.+|++. +.+.+..+..+.. ..++|+|+|++|+++..
T Consensus 265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 499997 3466667765433 79999999999998853
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-14 Score=178.65 Aligned_cols=254 Identities=12% Similarity=0.108 Sum_probs=162.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-eeeccCC-----------------CCeeEEEeeecCCCcEEEEecC
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-ESCTSHQ-----------------APVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-~tL~gHs-----------------s~VtsLq~afSpDG~lLaSSsD 1573 (1922)
+..+.|+ |+.+++++.|+ | +||+.+++.+ ..+..|. ..|.++ +|||| ..++.+.+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~--~~spd-~~~~~~~~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRT--LDAGR-GLVVLFTQ 100 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEE--EETTT-TEEEEEET
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeE--EECCC-CeEEEEEC
Confidence 5567788 67788888888 8 9999999873 4443332 568999 89999 66666677
Q ss_pred CcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-----Cceeeeeccccccc-----
Q 000177 1574 QDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-----YQLEAKLSDTSVNL----- 1640 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-----gk~i~tL~d~s~~~----- 1640 (1922)
++|++||+.+ +++..... ...+++|+|||++|+++ .|+.|++||+.+ ++............
T Consensus 101 ~~i~~~d~~~--~~~~~l~~~~~~~~~~~~SpdG~~la~~----~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 174 (706)
T 2z3z_A 101 GGLVGFDMLA--RKVTYLFDTNEETASLDFSPVGDRVAYV----RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA 174 (706)
T ss_dssp TEEEEEETTT--TEEEEEECCTTCCTTCEECTTSSEEEEE----ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC
T ss_pred CEEEEEECCC--CceEEccCCcccccCCcCCCCCCEEEEE----ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc
Confidence 9999999987 54433322 24779999999999985 468999999998 77654332100000
Q ss_pred --cCCCCcceEEEEcCCCCeEeec----------------------------------c----EEEEcCCCcceeeec--
Q 000177 1641 --TGRGHAYSQIHFSPSDTMLLWN----------------------------------G----ILWDRRNSVPVHRFD-- 1678 (1922)
Q Consensus 1641 --~~~gh~~~vVaFSPdG~lLaSg----------------------------------g----rLWDlrtgk~I~kf~-- 1678 (1922)
..+......+.|+|||++|++. . .+||+.+++......
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence 0000002349999999988854 2 799999887654442
Q ss_pred cCCCce-EEEEecCCCEEEEEe----------EEEecCCCeEEEEEc--CCCc-----eeEEEcc--CCCEEEEEEccCc
Q 000177 1679 QFTDHG-GGGFHPAGNEVIINS----------EVWDLRKFRLLRSVP--SLDQ-----TTITFNA--RGDVIYAILRRNL 1738 (1922)
Q Consensus 1679 gh~~~V-sVaFSPdG~~LASGS----------eIWDLrTgklL~tl~--gH~~-----~sVaFSP--dG~~LaSgs~~d~ 1738 (1922)
.+...+ ++.|+|||++|++++ .+||+.+++.+..+. .+.. ..+.|+| +|++++++..+..
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 344555 899999999998855 389999984443332 1221 4689999 9998887733221
Q ss_pred hhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEE-EEEcCCCceEEEEecC
Q 000177 1739 EDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLD-FATERTDSFVGLITMD 1796 (1922)
Q Consensus 1739 ~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~d-La~SPdds~LAVVe~d 1796 (1922)
. .+..++. +...+..+.. ...+.. ++|+|++..+++...+
T Consensus 335 ~-----------------~l~~~~~-~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 335 N-----------------HLYLYDT-TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp C-----------------EEEEEET-TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred c-----------------EEEEEEC-CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 1 1122221 2222333322 334666 7999999988877533
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=161.39 Aligned_cols=274 Identities=10% Similarity=0.046 Sum_probs=173.4
Q ss_pred CceeeEEecCCCCCCEEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1497 RFRPWRTCRDDAGALLTC-----ITFLGDSSHIAVGSH-TK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~-----LaFSPDG~lLASGS~-DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
....+..+..|. ..... .+|||||++|+.++. +| .|.+||+.+++......+|...+..+ .|+|||+.|
T Consensus 19 ~g~~~~~lt~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~--~~spdg~~l 95 (388)
T 3pe7_A 19 TGAQVTRLTPPD-VTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGG--FLSPDDDAL 95 (388)
T ss_dssp TCCEEEECSCTT-SCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSC--EECTTSSEE
T ss_pred CCcceEEecCCc-ccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccce--EEcCCCCEE
Confidence 345566677776 55665 889999999999887 67 48888999888877777777777667 789999988
Q ss_pred EEe-cCCcEEEeccCCCCCCcceEecc--c--ee--EEEcCCCCEEEEeec-------------------CCCCCeEEEE
Q 000177 1569 LSS-SSQDVHLWNASSIAGGPMHSFEG--C--KA--ARFSNSGNLFAALPT-------------------ETSDRGILLY 1622 (1922)
Q Consensus 1569 aSS-sDgtVkLWDl~t~~gk~l~tf~g--h--~s--VaFSPDG~~LaSgS~-------------------~S~DgtIrIW 1622 (1922)
+.+ .++.|++||+.+ ++....+.. . .. ..++|++++++.... ...+..|.+|
T Consensus 96 ~~~~~~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLAT--LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEETTTEEEEEETTT--CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEeCCCeEEEEECCC--CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 885 578999999987 554433322 1 12 335899998874310 1345789999
Q ss_pred ECCCCceeeeeccccccccCCCCcceEEEEcC-CCCeEeecc---------EEE--EcCCCcceeeeccCCC--ce-EEE
Q 000177 1623 DIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWNG---------ILW--DRRNSVPVHRFDQFTD--HG-GGG 1687 (1922)
Q Consensus 1623 DlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSgg---------rLW--Dlrtgk~I~kf~gh~~--~V-sVa 1687 (1922)
|+.+++...... .......+.|+| +|+.|+... .|| |+..+ .+..+..+.. .+ .+.
T Consensus 174 d~~~g~~~~l~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 174 DLKTGESTVILQ--------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-NMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp ETTTCCEEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-CCEESCCCCTTEEEEEEE
T ss_pred ECCCCceEEeec--------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-ceEEeeeCCCCcccccce
Confidence 999987654433 122344589999 998877322 444 54444 3444544442 34 789
Q ss_pred EecCCCEEEEEe----------EEEecCCCeE--EEEEcCCC-----ceeEEEccCCCEEEEEEccCchhhhhhhccccc
Q 000177 1688 FHPAGNEVIINS----------EVWDLRKFRL--LRSVPSLD-----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRV 1750 (1922)
Q Consensus 1688 FSPdG~~LASGS----------eIWDLrTgkl--L~tl~gH~-----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ 1750 (1922)
|+|||+.|+..+ .+||+.+++. +..++++. ...+.|+|+|+.|+....+... .
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----------~ 314 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG----------Y 314 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------------------
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccc----------c
Confidence 999999886644 2789988864 33444311 1234799999988865321000 0
Q ss_pred ccCCcceEEEEecCCCceeeeeccCC-----------ceEEEEEcCCCceEEEEe
Q 000177 1751 KHPLFAAFRTVDAINYSDIATIPVDR-----------CVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1751 ksp~~ssFrt~Da~dys~IaTidvkr-----------~I~dLa~SPdds~LAVVe 1794 (1922)
.......+.+++..+........... .+..++|+|+|+.|+...
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp --CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred ccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 00022345666655433221111222 367889999999998775
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-13 Score=153.98 Aligned_cols=261 Identities=11% Similarity=0.151 Sum_probs=160.2
Q ss_pred EEEEEe----CCCcEEEEECC--CCCcee-eeccCCCCeeEEEeeecCCCcEEEEec---CCcEEEeccCCCCCCcceEe
Q 000177 1523 HIAVGS----HTKELKIFDSN--SSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMHSF 1592 (1922)
Q Consensus 1523 lLASGS----~DGtIkIWDl~--tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSs---DgtVkLWDl~t~~gk~l~tf 1592 (1922)
.|++|+ .++.|.+|.++ +++... ....+...+..+ +|+|||++++++. ++.|++||+.....+.+..+
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~--a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYL--ALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCE--EECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceE--EEccCCeEEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 455554 34567777664 454433 334456677788 8899999555553 58999999975211233332
Q ss_pred c----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cc--eeeeecccccc--ccCCCCcceEEEEcCCCCeEeecc
Q 000177 1593 E----GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQ--LEAKLSDTSVN--LTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1593 ~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk--~i~tL~d~s~~--~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
. ....++|+|+|++|++++ ..++.|.+||+.. +. .+..+...... ..........++|+|+|++++++.
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~--~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSAN--YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEE--TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEe--CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 2 237899999999888872 3679999999963 32 22222200000 000111233499999999666543
Q ss_pred -----EEEEcC-CCcce--eeeccCC--CceEEEEecCCCEEEEEe------EEEecCC--CeE--EEEEcCCC------
Q 000177 1664 -----ILWDRR-NSVPV--HRFDQFT--DHGGGGFHPAGNEVIINS------EVWDLRK--FRL--LRSVPSLD------ 1717 (1922)
Q Consensus 1664 -----rLWDlr-tgk~I--~kf~gh~--~~VsVaFSPdG~~LASGS------eIWDLrT--gkl--L~tl~gH~------ 1717 (1922)
.+||+. +++.. ..+.... ....++|+|+|+++++.+ .+|++.. ++. +..+....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 889998 55432 2222222 233899999999777754 4898874 543 33333222
Q ss_pred --ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC---CCceeeeecc-CCceEEEEEcCCCceEE
Q 000177 1718 --QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI---NYSDIATIPV-DRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1718 --~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~---dys~IaTidv-kr~I~dLa~SPdds~LA 1791 (1922)
...++|+|+|++|+++...+ ..+.+|+.. ....+..+.. ...+..++|+|++++|+
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~------------------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGY------------------NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVV 301 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETT------------------TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred CcceeEEECCCCCEEEEEeCCC------------------CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEE
Confidence 25799999999997763321 223444432 2334444444 34578999999999998
Q ss_pred EEecCCCCCccceEEEEEe
Q 000177 1792 LITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1792 VVe~dds~d~dSsVRLyEV 1810 (1922)
+...+. ..+.+|.+
T Consensus 302 v~~~~~-----~~v~v~~~ 315 (347)
T 3hfq_A 302 VVNQNT-----DNATLYAR 315 (347)
T ss_dssp EEETTT-----TEEEEEEE
T ss_pred EEEcCC-----CcEEEEEE
Confidence 875322 56888876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=151.40 Aligned_cols=225 Identities=9% Similarity=0.137 Sum_probs=146.6
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCC--CCc--eeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHT----KELKIFDSNS--SSP--LESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~D----GtIkIWDl~t--gk~--l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
..+..+ |. ..+..++|+|||++|++++.+ +.|.+|++.. ++. +..+..+......+ ++ ++++|++
T Consensus 42 ~~~~~~--~~-~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~--~~--dg~~l~~ 114 (361)
T 3scy_A 42 LPLSDA--EV-ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYL--TT--NGKNIVT 114 (361)
T ss_dssp EEEEEE--EC-SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEE--EE--CSSEEEE
T ss_pred EEeecc--cC-CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEE--EE--CCCEEEE
Confidence 344444 55 678899999999999999986 8999999865 432 23344455666777 56 7776666
Q ss_pred e--cCCcEEEeccCCCCCCcceEe------cc------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-
Q 000177 1571 S--SSQDVHLWNASSIAGGPMHSF------EG------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL- 1629 (1922)
Q Consensus 1571 S--sDgtVkLWDl~t~~gk~l~tf------~g------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~- 1629 (1922)
+ .+++|.+|++.. ...+..+ .+ .++++|+|+|++++++. ..++.|++|++.....
T Consensus 115 ~~~~~~~v~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~v~v~~~~~~~~~ 190 (361)
T 3scy_A 115 ANYSGGSITVFPIGQ--DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD--LGTDQIHKFNINPNANA 190 (361)
T ss_dssp EETTTTEEEEEEBCT--TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTCCT
T ss_pred EECCCCEEEEEEeCC--CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe--CCCCEEEEEEEcCCCCc
Confidence 4 488999999975 2222111 11 15699999999776652 4578999999875442
Q ss_pred -----eeee-ccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcc--eeeeccC---CCce-EEEEecC
Q 000177 1630 -----EAKL-SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVP--VHRFDQF---TDHG-GGGFHPA 1691 (1922)
Q Consensus 1630 -----i~tL-~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~--I~kf~gh---~~~V-sVaFSPd 1691 (1922)
+... .... .....+.....++|+|+|++++..+ .+||+.+++. +..+... .... .++|+|+
T Consensus 191 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd 269 (361)
T 3scy_A 191 DNKEKFLTKGTPEA-FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD 269 (361)
T ss_dssp TTCCCCEEEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT
T ss_pred ccccceeecccccc-eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC
Confidence 1110 0000 0001223334599999999766433 8999987754 3333322 2223 8999999
Q ss_pred CCEEEEEe-------EEEecC--CCe--EEEEEcC-CCceeEEEccCCCEEEEEEc
Q 000177 1692 GNEVIINS-------EVWDLR--KFR--LLRSVPS-LDQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1692 G~~LASGS-------eIWDLr--Tgk--lL~tl~g-H~~~sVaFSPdG~~LaSgs~ 1735 (1922)
|++|+++. .+|++. +++ .+..+.. .....++|+|+|++|+++..
T Consensus 270 g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 270 GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC
Confidence 99886643 399985 444 5555554 22379999999999998853
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=177.81 Aligned_cols=293 Identities=10% Similarity=0.016 Sum_probs=181.1
Q ss_pred eeeecCceeeEEecCCCCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCce--eeeccCCCCeeEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGA---LLTCITFLGDSSHIAVGSH---------TKELKIFDSNSSSPL--ESCTSHQAPVTLV 1557 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~---~Vt~LaFSPDG~lLASGS~---------DGtIkIWDl~tgk~l--~tL~gHss~VtsL 1557 (1922)
.+.....+....+.+|. . .|.+++|||||++|++++. +++|++||+.+++.+ ..+ ...+..+
T Consensus 40 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~ 115 (719)
T 1z68_A 40 LYNIETGQSYTILSNRT-MKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYL 115 (719)
T ss_dssp EEESSSCCEEEEECHHH-HHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCE
T ss_pred EEEcCCCcEEEEEcccc-ccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccccc
Confidence 33344556566665554 3 3899999999999999887 799999999988763 222 2568888
Q ss_pred EeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe-cc--------c-------------eeEEEcCCCCEEEEeecCC-
Q 000177 1558 QSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF-EG--------C-------------KAARFSNSGNLFAALPTET- 1614 (1922)
Q Consensus 1558 q~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf-~g--------h-------------~sVaFSPDG~~LaSgS~~S- 1614 (1922)
.|||||+.|+++.+++|++||+.+ +++.... .+ + .++.|+|||++|++++.+.
T Consensus 116 --~~SPDG~~la~~~~~~i~~~~~~~--g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~ 191 (719)
T 1z68_A 116 --CWSPVGSKLAYVYQNNIYLKQRPG--DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDT 191 (719)
T ss_dssp --EECSSTTCEEEEETTEEEEESSTT--SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECT
T ss_pred --eECCCCCEEEEEECCeEEEEeCCC--CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCC
Confidence 899999999998899999999986 4433221 11 1 4799999999999984321
Q ss_pred ------------------------------CCCeEEEEECCCCcee--eeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1615 ------------------------------SDRGILLYDIQTYQLE--AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1615 ------------------------------~DgtIrIWDlrTgk~i--~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
....|++||+.+++.. ..+..+. ....+.+....++|+||++++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~SpD~~~~~~~ 270 (719)
T 1z68_A 192 DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA-MIASSDYYFSWLTWVTDERVCLQW 270 (719)
T ss_dssp TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH-HHHTSCEEEEEEEESSSSEEEEEE
T ss_pred CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc-cCCCCcceEEEeEEeCCCeEEEEE
Confidence 1127899999988753 1221000 001122334459999998877752
Q ss_pred c---------EEEE----cCCCcceeee----ccCCCce------EEEEecCCCEEEEE-e------E--EEecCCCeEE
Q 000177 1663 G---------ILWD----RRNSVPVHRF----DQFTDHG------GGGFHPAGNEVIIN-S------E--VWDLRKFRLL 1710 (1922)
Q Consensus 1663 g---------rLWD----lrtgk~I~kf----~gh~~~V------sVaFSPdG~~LASG-S------e--IWDLrTgklL 1710 (1922)
. .+|| +.++++...+ .++...+ .+.|+|||+.|+.. + + +||+.+++ .
T Consensus 271 ~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~ 349 (719)
T 1z68_A 271 LKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-A 349 (719)
T ss_dssp EESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-C
T ss_pred eccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-e
Confidence 2 6789 7777766555 3555443 57999999966542 2 2 66777666 3
Q ss_pred EEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc-eeeeec-----cCCceEEEE
Q 000177 1711 RSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS-DIATIP-----VDRCVLDFA 1782 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys-~IaTid-----vkr~I~dLa 1782 (1922)
..+..+.. ..+.|+ +|..|+....... + .+....+..++..... ....+. ....+..+.
T Consensus 350 ~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~-~-----------~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~ 416 (719)
T 1z68_A 350 IQITSGKWEAINIFRV-TQDSLFYSSNEFE-E-----------YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTAS 416 (719)
T ss_dssp EECSCSSSCEEEEEEE-CSSEEEEEESCGG-G-----------CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEE
T ss_pred EecccCceEEEEEEEE-eCCEEEEEEecCC-C-----------CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEE
Confidence 44543332 466667 8888877643300 0 0011112222221110 011111 123577889
Q ss_pred EcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1783 TERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1783 ~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
|+|++.++++....... ..+.+|++
T Consensus 417 ~s~dg~~l~~~~s~~~~---p~~~l~d~ 441 (719)
T 1z68_A 417 FSDYAKYYALVCYGPGI---PISTLHDG 441 (719)
T ss_dssp ECGGGSSEEEEECCBSS---CEEEEECS
T ss_pred ECCCCCEEEEEcCCCCC---CeEEEEEC
Confidence 99999988876432211 24566654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-13 Score=182.91 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=165.9
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-----------CCCCeeEEEeeec-CCCc
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-----------HQAPVTLVQSHLS-GETQ 1566 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-----------Hss~VtsLq~afS-pDG~ 1566 (1922)
...+.+..|. .+.+.+|+|||++|+++ .++.|++||+... .+..+.+ |...|.++ .|+ |||+
T Consensus 236 ~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~--~~S~pdG~ 309 (1045)
T 1k32_A 236 KDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAE--DFSPLDGD 309 (1045)
T ss_dssp CSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEE--EEEECGGG
T ss_pred CcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccccccccccccee--eecCCCCC
Confidence 3455666665 36678999999999988 4899999999443 3445554 44578999 889 9999
Q ss_pred EEEEecCCcEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEE-EEECCCCceeeeeccccccc
Q 000177 1567 LLLSSSSQDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGIL-LYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1567 lLaSSsDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIr-IWDlrTgk~i~tL~d~s~~~ 1640 (1922)
+|+++.++.|++|++.. +.. ..+.. ...++|+ +|+.|+++ +.+..+. +||+.+++... +.
T Consensus 310 ~la~~~~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~~~s-dg~~l~~~---s~~~~l~~~~d~~~~~~~~-l~------ 375 (1045)
T 1k32_A 310 LIAFVSRGQAFIQDVSG--TYV-LKVPEPLRIRYVRRGGD-TKVAFIHG---TREGDFLGIYDYRTGKAEK-FE------ 375 (1045)
T ss_dssp CEEEEETTEEEEECTTS--SBE-EECSCCSCEEEEEECSS-SEEEEEEE---ETTEEEEEEEETTTCCEEE-CC------
T ss_pred EEEEEEcCEEEEEcCCC--Cce-EEccCCCcceEEeeeEc-CCCeEEEE---ECCCceEEEEECCCCCceE-ec------
Confidence 99987799999999976 432 23332 3678999 99999988 4477888 99998776432 21
Q ss_pred cCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe---------------
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS--------------- 1699 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS--------------- 1699 (1922)
.+......++|+|+|++|++++ ++||+.+++....+.+|...+ +++|+|||++|++++
T Consensus 376 -~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i 454 (1045)
T 1k32_A 376 -ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 454 (1045)
T ss_dssp -CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred -CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence 1223445599999999998766 899999998887777888776 899999999988753
Q ss_pred EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
.+||+.+++ +..+..|.. ..++|+|+|++|+.+..++
T Consensus 455 ~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 455 HVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp EEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred EEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 389999887 566666654 6899999999999876533
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-13 Score=174.55 Aligned_cols=212 Identities=12% Similarity=0.112 Sum_probs=146.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCee-----EEEeeecCCCcEEEEec-C---------CcE
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVT-----LVQSHLSGETQLLLSSS-S---------QDV 1576 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vt-----sLq~afSpDG~lLaSSs-D---------gtV 1576 (1922)
..+++|+|||++|+++ ||+|++||+.++++...+.+|...+. .+ .|||||++|+.+. + +.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDY--SISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEE--EECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccce--EECCCCCEEEEEECCeeeEEEccceEE
Confidence 4589999999999987 99999999999998888888865432 35 7899999998864 3 567
Q ss_pred EEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc------
Q 000177 1577 HLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA------ 1646 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~------ 1646 (1922)
.+||+.+ +++. .+.. ...++|||||+.|+.+ .++.|++||+.+++......+........++.
T Consensus 95 ~~~d~~~--~~~~-~l~~~~~~~~~~~~SPdG~~la~~----~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 95 DIYDLNK--RQLI-TEERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEETTT--TEEC-CSSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEECCC--CcEE-EcccCCCcceeeEECCCCCEEEEE----ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 8999987 4432 2332 4789999999999986 35789999999887654222111000001111
Q ss_pred -----ceEEEEcCCCCeEeecc-----------------------------------------EEEEcCC---Cc--cee
Q 000177 1647 -----YSQIHFSPSDTMLLWNG-----------------------------------------ILWDRRN---SV--PVH 1675 (1922)
Q Consensus 1647 -----~~vVaFSPdG~lLaSgg-----------------------------------------rLWDlrt---gk--~I~ 1675 (1922)
...+.|||||+.|+... ++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 12388999999888531 5688877 63 222
Q ss_pred eec------cCCCce-EEEEecCCCEEEEEe---------EEEecCCCe----EE--EEE--cCCCc-------eeEEEc
Q 000177 1676 RFD------QFTDHG-GGGFHPAGNEVIINS---------EVWDLRKFR----LL--RSV--PSLDQ-------TTITFN 1724 (1922)
Q Consensus 1676 kf~------gh~~~V-sVaFSPdG~~LASGS---------eIWDLrTgk----lL--~tl--~gH~~-------~sVaFS 1724 (1922)
.+. ++...+ .+.|+|||+.++... .+||+.+++ +. .++ .++.. ..+.|+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 333 255556 899999999766654 388998876 21 112 23332 278999
Q ss_pred cCCCEEE-EEE
Q 000177 1725 ARGDVIY-AIL 1734 (1922)
Q Consensus 1725 PdG~~La-Sgs 1734 (1922)
|||+.|+ ..+
T Consensus 328 pDG~~l~~~~s 338 (740)
T 4a5s_A 328 LDGNSFYKIIS 338 (740)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 9999887 554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=166.41 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=135.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------Cceee-----eccCCCCeeEEEeeecCCCcEEE----E
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----------SPLES-----CTSHQAPVTLVQSHLSGETQLLL----S 1570 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----------k~l~t-----L~gHss~VtsLq~afSpDG~lLa----S 1570 (1922)
..++++++++++.+|++|+.|+ |+||+.... ..+.. ...|...|+++ +|+|++++|+ +
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~spdg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHL--ALSCDNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEE--EECTTSCEEEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEE--EEcCCCCEEEEEEec
Confidence 4689999999999999999998 899875311 01111 12356789999 8999999999 6
Q ss_pred e-cCCcEEEeccCCC-----C-CCc---ceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1571 S-SSQDVHLWNASSI-----A-GGP---MHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~-----~-gk~---l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
+ .|++|+|||+.+. . .++ +..+.+| ++++|+|+ +++|+++ +.|++|++||++++..+....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~---s~Dg~v~iwD~~~~~~~~~~~- 189 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC---LADGSIAVLQVTETVKVCATL- 189 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE---ETTSCEEEEEESSSEEEEEEE-
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE---ECCCeEEEEEcCCCcceeecc-
Confidence 4 4999999998752 0 022 2333333 88999997 7899998 889999999999986654443
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC-------ce-EEEEecCCCEEEEEe---
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD-------HG-GGGFHPAGNEVIINS--- 1699 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~-------~V-sVaFSPdG~~LASGS--- 1699 (1922)
.+......++|+|+|++|++++ ++||++ ++....+..+.. .+ ++.|++++.++++.+
T Consensus 190 ------~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 190 ------PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp ------CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ------CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 1223455699999999999887 899998 666665544321 44 899999998886543
Q ss_pred ---------EEEecCCC
Q 000177 1700 ---------EVWDLRKF 1707 (1922)
Q Consensus 1700 ---------eIWDLrTg 1707 (1922)
.+|++++.
T Consensus 263 g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 263 GTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCSSSCCEEEEEECCCT
T ss_pred CccCCCCceEEEEeccC
Confidence 39999764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=170.09 Aligned_cols=155 Identities=7% Similarity=0.032 Sum_probs=118.7
Q ss_pred CCCCCCEEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------Cc---eeeeccCCCCeeEEEeeecCC-CcEEE
Q 000177 1506 DDAGALLTCITFLGDSSHIA----VGSHTKELKIFDSNSS--------SP---LESCTSHQAPVTLVQSHLSGE-TQLLL 1569 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLA----SGS~DGtIkIWDl~tg--------k~---l~tL~gHss~VtsLq~afSpD-G~lLa 1569 (1922)
.|. +.|++++|+|+|++|+ +|+.|++|+|||+.++ +. +..+.+|...|+++ .|+|+ +.+|+
T Consensus 90 ~~~-~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~~~la 166 (434)
T 2oit_A 90 PMK-FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDM--KWNPTVPSMVA 166 (434)
T ss_dssp CCS-SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEE--EECSSCTTEEE
T ss_pred cCC-CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEE--EECCCCCCEEE
Confidence 355 7899999999999999 8899999999998654 22 35567899999999 88997 78888
Q ss_pred E-ecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+ +.|++|++||+++ +..+....+ +++++|+|+|++|++| +.|++|++||++ ++...++..+.... ..
T Consensus 167 s~s~Dg~v~iwD~~~--~~~~~~~~~~~~~v~~v~wspdg~~lasg---s~dg~v~iwd~~-~~~~~~~~~~~~~~--~~ 238 (434)
T 2oit_A 167 VCLADGSIAVLQVTE--TVKVCATLPSTVAVTSVCWSPKGKQLAVG---KQNGTVVQYLPT-LQEKKVIPCPPFYE--SD 238 (434)
T ss_dssp EEETTSCEEEEEESS--SEEEEEEECGGGCEEEEEECTTSSCEEEE---ETTSCEEEECTT-CCEEEEECCCTTCC--TT
T ss_pred EEECCCeEEEEEcCC--CcceeeccCCCCceeEEEEcCCCCEEEEE---cCCCcEEEEccC-CcccccccCCcccC--CC
Confidence 7 5699999999987 444444433 4889999999999999 889999999998 56555554211111 12
Q ss_pred C--cceEEEEcCCCCeEeecc------------EEEEcCCC
Q 000177 1645 H--AYSQIHFSPSDTMLLWNG------------ILWDRRNS 1671 (1922)
Q Consensus 1645 h--~~~vVaFSPdG~lLaSgg------------rLWDlrtg 1671 (1922)
| .+..++|++++.++++.+ ++||+++.
T Consensus 239 ~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 239 HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 3 344599999888885321 79999865
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-12 Score=147.43 Aligned_cols=264 Identities=13% Similarity=0.116 Sum_probs=162.8
Q ss_pred CCCCEEEEEeC----CCcEEEEEC--CCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C----CcEEEeccCCCCCC
Q 000177 1519 GDSSHIAVGSH----TKELKIFDS--NSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S----QDVHLWNASSIAGG 1587 (1922)
Q Consensus 1519 PDG~lLASGS~----DGtIkIWDl--~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D----gtVkLWDl~t~~gk 1587 (1922)
+...++++|++ ++.|.+|.+ .+++.......|...+..+ +|+|||++|++++ + +.|.+|++....+.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l--~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYL--IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSE--EECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceE--EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 34456677754 568999876 4555433222277778888 8899999888753 3 79999998752122
Q ss_pred --cceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC--------CCCcceEEEEc
Q 000177 1588 --PMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG--------RGHAYSQIHFS 1653 (1922)
Q Consensus 1588 --~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~--------~gh~~~vVaFS 1653 (1922)
.+..+.. ...++| ++++++++. ..++.|.+|++.+...+..+... ....+ .......++|+
T Consensus 89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTT--NGKNIVTAN--YSGGSITVFPIGQDGALLPASDV-IEFKGSGPDKERQTMPHLHCVRIT 163 (361)
T ss_dssp EEEEEEEECSSSCEEEEEE--CSSEEEEEE--TTTTEEEEEEBCTTSCBCSCSEE-EECCCCCSCTTTCSSCCEEEEEEC
T ss_pred EEEeeEeccCCCCcEEEEE--CCCEEEEEE--CCCCEEEEEEeCCCCcCccccee-EEccCCCCCccccCCCcceEEEEC
Confidence 2223321 244566 888777762 46799999999865443322100 00000 01112449999
Q ss_pred CCCCeEeecc------EEEEcCCCc-------c-------eeeeccCCCceEEEEecCCCEEEEEe------EEEecCCC
Q 000177 1654 PSDTMLLWNG------ILWDRRNSV-------P-------VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKF 1707 (1922)
Q Consensus 1654 PdG~lLaSgg------rLWDlrtgk-------~-------I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTg 1707 (1922)
|+|++++..+ .+|++.... . ...+........++|+|+|+++++++ .+|++.++
T Consensus 164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 9999665433 899887543 1 11222222333899999999887766 49999877
Q ss_pred eE--EEEEcCCCc-----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC----CCceeeeeccCC
Q 000177 1708 RL--LRSVPSLDQ-----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI----NYSDIATIPVDR 1776 (1922)
Q Consensus 1708 kl--L~tl~gH~~-----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~----dys~IaTidvkr 1776 (1922)
++ +..+..... ..++|+|+|++|+++.... ...+.+|+.. ....+..+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-----------------~~~i~v~~~~~~~g~~~~~~~~~~g~ 306 (361)
T 3scy_A 244 MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-----------------ADGVAIFKVDETNGTLTKVGYQLTGI 306 (361)
T ss_dssp EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-----------------SCEEEEEEECTTTCCEEEEEEEECSS
T ss_pred ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-----------------CCEEEEEEEcCCCCcEEEeeEecCCC
Confidence 54 444443322 5999999999998874330 1223444332 223444444445
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+.+++|+|+++++++.... ...+.+|.+.
T Consensus 307 ~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~d 336 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRD-----TNVIQIFERD 336 (361)
T ss_dssp CCCEEEECTTSCEEEEEETT-----TTEEEEEEEC
T ss_pred CCceEEECCCCCEEEEEECC-----CCCEEEEEEE
Confidence 67899999999999887432 2578888763
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-12 Score=147.71 Aligned_cols=216 Identities=10% Similarity=0.081 Sum_probs=151.7
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCC------CCeeEEEeeecCCC
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQ------APVTLVQSHLSGET 1565 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHs------s~VtsLq~afSpDG 1565 (1922)
+.....+.++++..+....+..++|+|+|++++ ++..++.|.+||+.+++.+..+..+. ..+..+ .|+|+|
T Consensus 26 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~--~~spdg 103 (349)
T 1jmx_B 26 VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF--AISPDG 103 (349)
T ss_dssp EETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE--EECTTS
T ss_pred EECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccce--EECCCC
Confidence 334456666666643213578999999998664 55678999999999998877775332 337788 889999
Q ss_pred cEEEEec-------------CCcEEEeccCCCC-CCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1566 QLLLSSS-------------SQDVHLWNASSIA-GGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1566 ~lLaSSs-------------DgtVkLWDl~t~~-gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
++|+++. ++.|.+||+.+.. .+.+..+.. ..+++|+|+|+ ++++ +. .|.+||+.+++
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~---~~--~i~~~d~~~~~ 177 (349)
T 1jmx_B 104 KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA---GP--DIYKMDVKTGK 177 (349)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE---SS--SEEEECTTTCC
T ss_pred CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc---cC--cEEEEeCCCCc
Confidence 9888854 4899999998611 112233332 46788999999 5554 32 39999999998
Q ss_pred eeeeecccccccc--------------C-----------------------------------------------CCCcc
Q 000177 1629 LEAKLSDTSVNLT--------------G-----------------------------------------------RGHAY 1647 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~--------------~-----------------------------------------------~gh~~ 1647 (1922)
.+..+........ . .+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence 8776642110000 0 00112
Q ss_pred eEEEEcC-CCCeEeecc---EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1648 SQIHFSP-SDTMLLWNG---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1648 ~vVaFSP-dG~lLaSgg---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
..++|+| +|++++++. .+||+.+++.+..+.......+++|+|+|++|++++ .+||+.+++.+..++..
T Consensus 258 ~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eeeEecCCCCCEEEEEcCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 2367889 998887644 899999999888887555455999999999888766 49999999999888643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-12 Score=165.33 Aligned_cols=284 Identities=12% Similarity=0.066 Sum_probs=175.7
Q ss_pred eeecCceeeEEecCCCCC----CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCceeeeccCCCCeeEEEe
Q 000177 1493 FVYSRFRPWRTCRDDAGA----LLTCITFLGDSSHIAVGSHT---------KELKIFDSNSSSPLESCTSHQAPVTLVQS 1559 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~----~Vt~LaFSPDG~lLASGS~D---------GtIkIWDl~tgk~l~tL~gHss~VtsLq~ 1559 (1922)
|.....+....+.+|... .+..++|||||++|+.++.+ +.+.+||+.+++.. .+..|...+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~-- 117 (740)
T 4a5s_A 41 FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWV-- 117 (740)
T ss_dssp EETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEE--
T ss_pred EECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceee--
Confidence 334455556667776511 22448899999999999987 56679999988754 467788889998
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcce-Eecc---------------------ceeEEEcCCCCEEEEeecCCC--
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMH-SFEG---------------------CKAARFSNSGNLFAALPTETS-- 1615 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~-tf~g---------------------h~sVaFSPDG~~LaSgS~~S~-- 1615 (1922)
.|||||+.|+.+.++.|++||+.+ +...+ +..+ ...+.|||||++|+.++.+..
T Consensus 118 ~~SPdG~~la~~~~~~i~~~~~~~--~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 118 TWSPVGHKLAYVWNNDIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp EECSSTTCEEEEETTEEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred EECCCCCEEEEEECCeEEEEECCC--CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCC
Confidence 899999999999999999999976 44322 1111 134889999999998742211
Q ss_pred -------------------------------CCeEEEEECCC---Cce--eeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1616 -------------------------------DRGILLYDIQT---YQL--EAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1616 -------------------------------DgtIrIWDlrT---gk~--i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
..+|++||+.+ ++. ...+..+.. ...+.+....++|+|||+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~wspdg~~~ 274 (740)
T 4a5s_A 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-MLIGDHYLCDVTWATQERIS 274 (740)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-HHTSCEEEEEEEEEETTEEE
T ss_pred ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-CCCCCeEEEEEEEeCCCeEE
Confidence 12588899988 732 223321100 00123334459999999966
Q ss_pred eecc---------EEEEcCCCc----c--eeee--ccCCCce------EEEEecCCCEEE-EEe--------EEEecCCC
Q 000177 1660 LWNG---------ILWDRRNSV----P--VHRF--DQFTDHG------GGGFHPAGNEVI-INS--------EVWDLRKF 1707 (1922)
Q Consensus 1660 aSgg---------rLWDlrtgk----~--I~kf--~gh~~~V------sVaFSPdG~~LA-SGS--------eIWDLrTg 1707 (1922)
+... .+||+.+++ + +.++ .++..++ .+.|+|||+.|+ ..+ .+||+.++
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 6321 799999987 2 2222 3344332 578999999877 665 27788766
Q ss_pred eEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec-----cCCceEEE
Q 000177 1708 RLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP-----VDRCVLDF 1781 (1922)
Q Consensus 1708 klL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid-----vkr~I~dL 1781 (1922)
+......+... ..+ +.++|..|+...... ...+....+..++.........+. ....+..+
T Consensus 355 ~~~~lT~g~~~v~~~-~~~d~~~i~f~~~~~------------~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~ 421 (740)
T 4a5s_A 355 DCTFITKGTWEVIGI-EALTSDYLYYISNEY------------KGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSV 421 (740)
T ss_dssp SCEESCCSSSCEEEE-EEECSSEEEEEESCG------------GGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEE
T ss_pred ceEecccCCEEEEEE-EEEeCCEEEEEEecC------------CCCCceeEEEEEECCCCCcceeeccccCCCCCceEEE
Confidence 65443333222 232 235577776553320 011222334444433222111111 13468899
Q ss_pred EEcCCCceEEEEec
Q 000177 1782 ATERTDSFVGLITM 1795 (1922)
Q Consensus 1782 a~SPdds~LAVVe~ 1795 (1922)
.|+|++.+++....
T Consensus 422 ~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 422 SFSKEAKYYQLRCS 435 (740)
T ss_dssp EECTTSSEEEEEEC
T ss_pred EECCCCCEEEEEeC
Confidence 99999998877653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=150.53 Aligned_cols=231 Identities=9% Similarity=0.036 Sum_probs=154.9
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe---
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS--- 1571 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS--- 1571 (1922)
.......+...+|. ..+..+.|+|||++|+.++.++.|++||+.+++....+..+...+....|.+++++++++..
T Consensus 67 ~~~g~~~~lt~~~~-~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 145 (388)
T 3pe7_A 67 LNTQVATQLTEGRG-DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIR 145 (388)
T ss_dssp TTTCEEEECCCSSC-BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred CCCCceEEeeeCCC-CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecccccc
Confidence 34555555555665 55567789999999999999999999999999887777777776766655679999998741
Q ss_pred --------------------cCCcEEEeccCCCCCCcceEecc---ceeEEEcC-CCCEEEEeecCCC---CCeEEEEEC
Q 000177 1572 --------------------SSQDVHLWNASSIAGGPMHSFEG---CKAARFSN-SGNLFAALPTETS---DRGILLYDI 1624 (1922)
Q Consensus 1572 --------------------sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSP-DG~~LaSgS~~S~---DgtIrIWDl 1624 (1922)
.+..|.+||+.+ ++....... ...+.|+| +|++|+.+..+.. ...|.+||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT--GESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT--CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred CcccccccccchhhhhhccCCcceEEEEECCC--CceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 246799999987 543322222 36789999 9999888743221 347888888
Q ss_pred CCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcc--eeeeccCCCc---e-EEEE
Q 000177 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVP--VHRFDQFTDH---G-GGGF 1688 (1922)
Q Consensus 1625 rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~--I~kf~gh~~~---V-sVaF 1688 (1922)
.++.. ..+.. ...+.......|+|+|+.|+..+ .+||+.+++. +..+.++... . ...|
T Consensus 224 ~~~~~-~~l~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 297 (388)
T 3pe7_A 224 DGTNM-RKVKT-----HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM 297 (388)
T ss_dssp TSCCC-EESCC-----CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE
T ss_pred CCCce-EEeee-----CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE
Confidence 76544 33320 00011233478999999776422 6899988863 3344331111 1 2479
Q ss_pred ecCCCEEEEE---------e-----EEEecCCCeEEEEEcCCC-------------ceeEEEccCCCEEEEEEc
Q 000177 1689 HPAGNEVIIN---------S-----EVWDLRKFRLLRSVPSLD-------------QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1689 SPdG~~LASG---------S-----eIWDLrTgklL~tl~gH~-------------~~sVaFSPdG~~LaSgs~ 1735 (1922)
+|+|+.|+.. . .+||+.+++.. .+..+. ...++|+|+|+.|+.++.
T Consensus 298 spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 298 VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp EEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 9999988742 1 38999887754 343332 367899999999987753
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.6e-12 Score=145.65 Aligned_cols=282 Identities=7% Similarity=-0.033 Sum_probs=165.2
Q ss_pred CceeeEEecCCCC----CCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1497 RFRPWRTCRDDAG----ALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1497 rfrpirtLrgH~d----~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
....++.+..+.. ..+.+++|||||++|+..... ..|.+||+.+++......++...+..+ .|+|||+.|+
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~--~~spdg~~l~ 96 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGG--FISTDERAFF 96 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTC--EECTTSSEEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccc--eECCCCCEEE
Confidence 3344555555430 226788999999998877543 478888998877544434333333335 6899999887
Q ss_pred E-ecCCcEEEeccCCCCCCcceEeccc----ee-------------------EEEcCCCCEEEEee--cCCCCCeEEEEE
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSFEGC----KA-------------------ARFSNSGNLFAALP--TETSDRGILLYD 1623 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf~gh----~s-------------------VaFSPDG~~LaSgS--~~S~DgtIrIWD 1623 (1922)
. +.++.|++||+.+ ++....+..+ .. +.|+|+++.++... ....+..|.+||
T Consensus 97 ~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 97 YVKNELNLMKVDLET--LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EEETTTEEEEEETTT--CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEcCCcEEEEECCC--CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence 7 5577899999987 4443333211 11 35677777665531 013567899999
Q ss_pred CCCCceeeeeccccccccCCCCcceEEEEcC-CCCeEeec---------c--EEEEcCCCcceeeeccCC-C-ce-EEEE
Q 000177 1624 IQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWN---------G--ILWDRRNSVPVHRFDQFT-D-HG-GGGF 1688 (1922)
Q Consensus 1624 lrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSg---------g--rLWDlrtgk~I~kf~gh~-~-~V-sVaF 1688 (1922)
+.+++...... .......+.|+| +++.|+.. . .+||+..++.. .+..+. . .+ .+.|
T Consensus 175 ~~~g~~~~~~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 175 IETGELEVIHQ--------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFW 245 (396)
T ss_dssp TTTCCEEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEE
T ss_pred CCCCcEEeecc--------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEE
Confidence 99887655443 123344589999 78766532 2 56676655433 333332 2 23 7899
Q ss_pred ecCCCEEEEEe----------EEEecCCCeEEEEEcCCCceeEEEcc-CCCEEEEEEccCchhhhhhhcccccccCCcce
Q 000177 1689 HPAGNEVIINS----------EVWDLRKFRLLRSVPSLDQTTITFNA-RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAA 1757 (1922)
Q Consensus 1689 SPdG~~LASGS----------eIWDLrTgklL~tl~gH~~~sVaFSP-dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ss 1757 (1922)
+|+|++|+..+ .+||+.+++...... .....+.|+| +|++++.+.... . +.. .............
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~s~~dg~~l~~~~~~~-p-~~~-~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPPCSHLMSNFDGSLMVGDGCDA-P-VDV-ADADSYNIENDPF 321 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCSEEEEEECSSSSEEEEEECCC-------------CCCCCCE
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCCCCCCccCCCCceEEEecCCc-c-eee-ccccccccCCCCc
Confidence 99999877663 378988876543322 2222389999 999888753210 0 000 0000000012245
Q ss_pred EEEEecCCCceeeeeccCC-----------ceEEEEEcCCCceEEEEec
Q 000177 1758 FRTVDAINYSDIATIPVDR-----------CVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1758 Frt~Da~dys~IaTidvkr-----------~I~dLa~SPdds~LAVVe~ 1795 (1922)
+..++..+........... .+..++|+|++++|+....
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 322 LYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp EEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred EEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 6666654433221111111 2556789999999887753
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-11 Score=143.61 Aligned_cols=215 Identities=12% Similarity=0.099 Sum_probs=143.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCceeeec--cCCCCeeEEEeeecCCCcE--EEEe-------------
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSN-SSSPLESCT--SHQAPVTLVQSHLSGETQL--LLSS------------- 1571 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~-tgk~l~tL~--gHss~VtsLq~afSpDG~l--LaSS------------- 1571 (1922)
..+..++|+|||++|++++.+ .|.+|++. +++...... .+ +.+.++ .|+|||++ ++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRAN--DADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGG--CTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccE--EECCCCCEEEEEEecCCcceeccceee
Confidence 467899999999999999988 99999997 776544332 12 235567 89999994 4443
Q ss_pred -cCCcEEEeccCCCCCCcceEec--------cceeEEEcCCCCEEEEeecCCCCCeEEEEECC-CCceeeeecccccccc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFE--------GCKAARFSNSGNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~--------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~ 1641 (1922)
.++++.+|++.. .++....+. ..++++|+|+|++++++. ..++.|++||+. +++...... ....
T Consensus 116 ~~~g~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~---~~~~ 189 (365)
T 1jof_A 116 KFAGYGNVFSVSE-TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD--LTANKLWTHRKLASGEVELVGS---VDAP 189 (365)
T ss_dssp SSCCEEEEEEECT-TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCEEEEEE---EECS
T ss_pred cCCceEEEEccCC-CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc--CCCCEEEEEEECCCCCEEEeee---EecC
Confidence 588999999974 144332222 247899999999888762 346799999998 776532111 0000
Q ss_pred CCCCcceEEEEcCCCCeEeecc------EEEEcC--CCcce---eeec-------cCCC------ce-EEE-EecCCCEE
Q 000177 1642 GRGHAYSQIHFSPSDTMLLWNG------ILWDRR--NSVPV---HRFD-------QFTD------HG-GGG-FHPAGNEV 1695 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLaSgg------rLWDlr--tgk~I---~kf~-------gh~~------~V-sVa-FSPdG~~L 1695 (1922)
.++.....++|+|+|+++++.+ .+|++. +++.. ..+. ++.. .+ .++ |+|+|++|
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 0123334489999999876433 788765 56542 1221 1221 34 899 99999988
Q ss_pred EEEe-----------EEEecC-CCeEEE---EEcCCC--ceeEEEcc---CCCEEEEEE
Q 000177 1696 IINS-----------EVWDLR-KFRLLR---SVPSLD--QTTITFNA---RGDVIYAIL 1734 (1922)
Q Consensus 1696 ASGS-----------eIWDLr-TgklL~---tl~gH~--~~sVaFSP---dG~~LaSgs 1734 (1922)
++++ .+|++. ++++.. .+..+. ...++|+| +|++|+++.
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 7653 289996 666543 233332 37899999 899999884
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-11 Score=144.99 Aligned_cols=261 Identities=10% Similarity=0.086 Sum_probs=178.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCceeeeccC------CCCeeEEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH----------TKELKIFDSNSSSPLESCTSH------QAPVTLVQ 1558 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~----------DGtIkIWDl~tgk~l~tL~gH------ss~VtsLq 1558 (1922)
...++.+.++..+. .+ .++|+|||++|++++. +++|.+||..+++.+.++..+ ......+
T Consensus 38 ~~t~~~~~~i~~g~-~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i- 113 (361)
T 2oiz_A 38 YTNGKFLGMVPTAF-NG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLF- 113 (361)
T ss_dssp TTTCCEEEEEECCE-EE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGE-
T ss_pred CCCCeEEEEecCCC-CC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceE-
Confidence 34566677777665 44 8999999999999873 678999999999988877532 3456677
Q ss_pred eeecCCCcEEEEe--c-CCcEEEeccCCCCCCcceE-ecc--ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCC-Ccee
Q 000177 1559 SHLSGETQLLLSS--S-SQDVHLWNASSIAGGPMHS-FEG--CKAARFSNSG-NLFAALPTETSDRGILLYDIQT-YQLE 1630 (1922)
Q Consensus 1559 ~afSpDG~lLaSS--s-DgtVkLWDl~t~~gk~l~t-f~g--h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrT-gk~i 1630 (1922)
.++|||++|+++ . +++|.+||+.+ ++.+.+ +.. .+.+.+.|++ ..+++. +.|+.+.+|++.. ++..
T Consensus 114 -~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~~~~i~~~~~~~v~~~p~~~~~~~~~---~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 114 -RQTTDGKFIVLQNASPATSIGIVDVAK--GDYVEDVTAAAGCWSVIPQPNRPRSFMTI---CGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp -EECTTSSEEEEEEESSSEEEEEEETTT--TEEEEEEGGGTTEEEEEECTTSSSEEEEE---ETTSSEEEEEECTTSSEE
T ss_pred -EECCCCCEEEEECCCCCCeEEEEECCC--CcEEEEEecCCCcceeEEcCCCCeeEEEE---CCCCcEEEEEECCCCcEe
Confidence 889999999875 3 67899999998 666666 542 3446778876 566666 6789999999875 5544
Q ss_pred eeeccccccccCCCCcceE-EEEcCCCCeEeecc-----EEEEcCCCcc--eeeeccC-----------CCceEEEEecC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG-----ILWDRRNSVP--VHRFDQF-----------TDHGGGGFHPA 1691 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg-----rLWDlrtgk~--I~kf~gh-----------~~~VsVaFSPd 1691 (1922)
........ ........ +.++|++..++..+ .+||+..... +..+... .....++|+|+
T Consensus 188 ~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 188 SQSRSKQM---FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEECCCC---SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred eeccccce---EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 22110000 00111111 33455554444222 6777765432 2222111 11113789999
Q ss_pred CCEEEEEe----------------EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCc
Q 000177 1692 GNEVIINS----------------EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLF 1755 (1922)
Q Consensus 1692 G~~LASGS----------------eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ 1755 (1922)
++.+++.. .+||+.+++.+.+++.+..+.++|+|+|++||++. .
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n-------------------~- 324 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLD-------------------G- 324 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEEC-------------------S-
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeC-------------------C-
Confidence 88776542 27899999999999865578999999999999873 1
Q ss_pred ceEEEEecCCC--ceeeee-ccCCceEEEEEcCCCc
Q 000177 1756 AAFRTVDAINY--SDIATI-PVDRCVLDFATERTDS 1788 (1922)
Q Consensus 1756 ssFrt~Da~dy--s~IaTi-dvkr~I~dLa~SPdds 1788 (1922)
..+.+||..+. +.+.++ .....-..++++|+|.
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 35788999988 889886 5677788899999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-12 Score=157.24 Aligned_cols=215 Identities=11% Similarity=0.083 Sum_probs=144.1
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC---CCceeeeccCCCCeeEEEeeecCCC--cEEEEecC
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSH---TKELKIFDSNS---SSPLESCTSHQAPVTLVQSHLSGET--QLLLSSSS 1573 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~---DGtIkIWDl~t---gk~l~tL~gHss~VtsLq~afSpDG--~lLaSSsD 1573 (1922)
+.+..|....|.+++|||| +++++++. +...+||.+.. +... .+..+. .+... +|+||+ .+++++.+
T Consensus 57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~--~~s~dg~~~~~~s~~~ 131 (582)
T 3o4h_A 57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRIL--SGVDTGEAVVFTGATE 131 (582)
T ss_dssp EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEE--EEEECSSCEEEEEECS
T ss_pred EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-Cceee--eeCCCCCeEEEEecCC
Confidence 3445544258999999999 88888875 55567765543 3332 343222 34455 455555 45566666
Q ss_pred CcEEEeccCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSD-RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
+.+.|||+.+ +++...... ..+++|+|||++|++++.+..+ +.|++||+.+++.. .+. .+......++
T Consensus 132 ~~~~l~d~~~--g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-------~~~~~~~~~~ 201 (582)
T 3o4h_A 132 DRVALYALDG--GGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-------SGEGSFSSAS 201 (582)
T ss_dssp SCEEEEEEET--TEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-------CSSCEEEEEE
T ss_pred CCceEEEccC--CcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-------cCCCccccce
Confidence 6666999987 544333222 2789999999999977332212 78999999988765 343 1122334599
Q ss_pred EcCCCCeEeecc-------EEEEcCCCcceeeeccCCCce-EEE--------EecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1652 FSPSDTMLLWNG-------ILWDRRNSVPVHRFDQFTDHG-GGG--------FHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1652 FSPdG~lLaSgg-------rLWDlrtgk~I~kf~gh~~~V-sVa--------FSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
|+|||++|++.. ++||+.++++. .+.++...+ .+. |+|||..+++++ +||++ ++.+
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 999999999543 79999998877 677776655 556 999998778777 49999 7765
Q ss_pred EEEcCCCceeEEEccCCCEEEEEEcc
Q 000177 1711 RSVPSLDQTTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1711 ~tl~gH~~~sVaFSPdG~~LaSgs~~ 1736 (1922)
.+.. ....+++|+ +|++++++...
T Consensus 279 ~~~~-~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 279 EAPQ-GNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp CCCS-SEEEEEEEE-TTEEEEEEEET
T ss_pred ccCC-CceEEEEec-CCEEEEEEcCC
Confidence 5222 223689999 99988877543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=138.06 Aligned_cols=264 Identities=14% Similarity=0.122 Sum_probs=158.8
Q ss_pred EEEEEeCC--CcEEEEEC--CCCCcee--eec-cCCCCeeEEEeeecCCCcEEEEecCCcEEEeccC-CCCCCcceEec-
Q 000177 1523 HIAVGSHT--KELKIFDS--NSSSPLE--SCT-SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS-SIAGGPMHSFE- 1593 (1922)
Q Consensus 1523 lLASGS~D--GtIkIWDl--~tgk~l~--tL~-gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~-t~~gk~l~tf~- 1593 (1922)
+|++|+.. +.|.+|++ .+++... ... ++...+..+ +|+|+|++|++++.+.|.+|++. + ++......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~--a~spdg~~l~~~~~~~v~~~~~~~~--g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWM--TFDHERKNIYGAAMKKWSSFAVKSP--TEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEE--EECTTSSEEEEEEBTEEEEEEEEET--TEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEE--EECCCCCEEEEEccceEEEEEECCC--CCEEEeeEe
Confidence 46677764 46877765 4554322 111 244567788 89999998877543399999997 5 54433221
Q ss_pred ---c-ceeEEEcCCCCE--EEEee------cCC----CCCeEEEEECC-CCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1594 ---G-CKAARFSNSGNL--FAALP------TET----SDRGILLYDIQ-TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1594 ---g-h~sVaFSPDG~~--LaSgS------~~S----~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+ ..+++|+|+|++ ++++. .+. .++++.+|++. +++....+.. . ....+.....++|+|+|
T Consensus 80 ~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN--Y-EYQENTGIHGMVFDPTE 156 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE--E-ECCTTCCEEEEEECTTS
T ss_pred ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee--E-EeCCCCcceEEEECCCC
Confidence 2 356899999995 44441 001 58899999997 4655443320 0 00012234459999999
Q ss_pred CeEeecc------EEEEcC-CCcce--eeecc--CCCce-EEEEecCCCEEEEEe------EEEecC--CCeEE---EEE
Q 000177 1657 TMLLWNG------ILWDRR-NSVPV--HRFDQ--FTDHG-GGGFHPAGNEVIINS------EVWDLR--KFRLL---RSV 1713 (1922)
Q Consensus 1657 ~lLaSgg------rLWDlr-tgk~I--~kf~g--h~~~V-sVaFSPdG~~LASGS------eIWDLr--TgklL---~tl 1713 (1922)
++++++. .+||+. +++.. ..+.. +.... .++|+|+|+++++++ .+|++. ++++. ..+
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 9877532 899998 77643 33432 23334 899999999988765 388764 56543 223
Q ss_pred c-------CCC--------ceeEE-EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC-CCceee---eec
Q 000177 1714 P-------SLD--------QTTIT-FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI-NYSDIA---TIP 1773 (1922)
Q Consensus 1714 ~-------gH~--------~~sVa-FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~-dys~Ia---Tid 1773 (1922)
. ++. ...++ |+|+|++|+++...... .....+.+|+.. +..... .+.
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~-------------~~~~~i~v~~~~~~g~~~~~~~~~~ 303 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-------------ELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-------------TSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC-------------CCCCeEEEEEECCCCCEEEeeeeee
Confidence 2 122 36899 99999999877432210 011245555532 222211 122
Q ss_pred -cCCceEEEEEcC---CCceEEEEecCCCCCccceEEEEEec
Q 000177 1774 -VDRCVLDFATER---TDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1774 -vkr~I~dLa~SP---dds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.......++++| +++++++...+ ...+++|++.
T Consensus 304 ~~~~~~~~~a~sp~~~dg~~l~v~~~~-----~~~v~v~~~~ 340 (365)
T 1jof_A 304 TPTSGGHSNAVSPCPWSDEWMAITDDQ-----EGWLEIYRWK 340 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSS-----SCEEEEEEEE
T ss_pred cCCCCcccceecCCCcCCCEEEEEEcC-----CCeEEEEEEc
Confidence 223456788999 89999877422 2568888763
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-11 Score=150.80 Aligned_cols=223 Identities=9% Similarity=0.022 Sum_probs=146.8
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCCceeeeccCCCCee---------EEEeeecCCCcE-EEE
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVG--SHTKELKIFDSNSSSPLESCTSHQAPVT---------LVQSHLSGETQL-LLS 1570 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASG--S~DGtIkIWDl~tgk~l~tL~gHss~Vt---------sLq~afSpDG~l-LaS 1570 (1922)
.+.+|. ..|..++|++++-+++++ +.++...||....+.....+..|...|. ...|..||||+. |+.
T Consensus 18 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRS-GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTC-SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcC-CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 356788 899999999887777777 5688999999765666677777776666 553333599998 777
Q ss_pred ec--CCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecC-------CCCCeEEEEECCC------
Q 000177 1571 SS--SQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTE-------TSDRGILLYDIQT------ 1626 (1922)
Q Consensus 1571 Ss--DgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~-------S~DgtIrIWDlrT------ 1626 (1922)
+. +..|.+|++..........+.. ...++|+|||++|++++.+ .....|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 65 4556666654000022333332 3678999999999988432 1115899999988
Q ss_pred Cceeeee-ccccccccCCCCcceEEEEcCCCCeEeecc-------------EEEEcC-CC---cceeeeccCCCce-EEE
Q 000177 1627 YQLEAKL-SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-------------ILWDRR-NS---VPVHRFDQFTDHG-GGG 1687 (1922)
Q Consensus 1627 gk~i~tL-~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-------------rLWDlr-tg---k~I~kf~gh~~~V-sVa 1687 (1922)
+...... . .......++|||||++|+..+ .+||+. ++ +......++...+ .+.
T Consensus 177 ~~~~~l~~~--------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 177 SAVRELSDD--------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp GGSEESSCS--------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CceeEEEec--------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 5543222 1 111222389999999887322 788998 56 3443344445556 899
Q ss_pred EecCCCEEEEEe-----EEE--ecCCCeEEEEEcCCC----------ceeEEEccCCCEEEEEE
Q 000177 1688 FHPAGNEVIINS-----EVW--DLRKFRLLRSVPSLD----------QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1688 FSPdG~~LASGS-----eIW--DLrTgklL~tl~gH~----------~~sVaFSPdG~~LaSgs 1734 (1922)
|+|||+++++++ +|| |+.+++.......+. ...++|+|+|.+++++.
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence 999999776665 354 555666554333322 24788999999888874
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-10 Score=131.96 Aligned_cols=215 Identities=11% Similarity=0.160 Sum_probs=156.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCCceeeec-cCCCCeeEEEeeecCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHT------------------------KELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~D------------------------GtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpD 1564 (1922)
+.+++++|+|+|+++++.+.+ ++|.+||..+++.+..+. ++-.....| +++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gi--a~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGL--SIDTD 101 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEE--EECTT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEE--EECCC
Confidence 679999999999999998888 579999999999877664 555678899 88999
Q ss_pred CcEEEEe-cCCcEEEeccCCCCCCcceEec-------------cceeEEEcC-CCCEEEEeecCC-CCCeEEEEECCCCc
Q 000177 1565 TQLLLSS-SSQDVHLWNASSIAGGPMHSFE-------------GCKAARFSN-SGNLFAALPTET-SDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1565 G~lLaSS-sDgtVkLWDl~t~~gk~l~tf~-------------gh~sVaFSP-DG~~LaSgS~~S-~DgtIrIWDlrTgk 1628 (1922)
|+++++. .++.|++||.... ...+..+. ..+.++|+| +++.+++. + .++.|++|| .+++
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d---~~~~~~I~~~~-~~g~ 176 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSK-EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD---GYCNSRIVQFS-PSGK 176 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCS-SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE---CSSCCEEEEEC-TTSC
T ss_pred CCEEEEECCCCEEEEEeCCCC-eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe---CCCCCeEEEEc-CCCC
Confidence 9988885 4889999998641 11455552 237899999 78888876 5 578999999 5677
Q ss_pred eeeeeccccccc---cCCCCcceEEEEcCC-CCeEeecc-----EEEEcCCCcceeeecc--CCCce-EEEEecCCCEEE
Q 000177 1629 LEAKLSDTSVNL---TGRGHAYSQIHFSPS-DTMLLWNG-----ILWDRRNSVPVHRFDQ--FTDHG-GGGFHPAGNEVI 1696 (1922)
Q Consensus 1629 ~i~tL~d~s~~~---~~~gh~~~vVaFSPd-G~lLaSgg-----rLWDlrtgk~I~kf~g--h~~~V-sVaFSPdG~~LA 1696 (1922)
.+..+....... ...-.....++|+|+ +.+++++. ++||..+++.+.++.. +...+ .++|+| |..++
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEE
Confidence 776664110000 000011233999998 77777665 8999998998888843 33344 889999 55444
Q ss_pred EEe------------EEEecCCCeEEEEEc---CCCc--eeEEEccCCCEEEEE
Q 000177 1697 INS------------EVWDLRKFRLLRSVP---SLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1697 SGS------------eIWDLrTgklL~tl~---gH~~--~sVaFSPdG~~LaSg 1733 (1922)
+.+ .+||+.+++.+.++. ++.. ..|+|+|+| .|+.+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyva 308 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIG 308 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEE
Confidence 443 389999999999884 3322 799999999 45544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-10 Score=124.63 Aligned_cols=210 Identities=10% Similarity=0.185 Sum_probs=153.5
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec------cCCCCeeEEEeee-cCCCcEEEEec--CCcE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT------SHQAPVTLVQSHL-SGETQLLLSSS--SQDV 1576 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~------gHss~VtsLq~af-SpDG~lLaSSs--DgtV 1576 (1922)
+|. ..+.+++++++|+++++.+.++.|.+||.. ++.+..+. +|...+..+ ++ .++++++++.. ++.|
T Consensus 27 g~~-~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i--~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQF-TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRV--AVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCB-SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEE--EEETTTTEEEEEECGGGCEE
T ss_pred Ccc-CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEE--EEEcCCCeEEEEcCCCCCEE
Confidence 455 678999999999999998999999999986 66666653 344678888 77 57888888863 8899
Q ss_pred EEeccCCCCCCcceEec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1577 HLWNASSIAGGPMHSFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
.+||. + ++.+..+. ..+.++++|+|+.+++. ..++.|.+||.. ++.+..+... ........++
T Consensus 103 ~~~d~-~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~---~~~~~i~~~~~~-g~~~~~~~~~-----~~~~~p~~i~ 170 (286)
T 1q7f_A 103 QIYNQ-Y--GQFVRKFGATILQHPRGVTVDNKGRIIVVE---CKVMRVIIFDQN-GNVLHKFGCS-----KHLEFPNGVV 170 (286)
T ss_dssp EEECT-T--SCEEEEECTTTCSCEEEEEECTTSCEEEEE---TTTTEEEEECTT-SCEEEEEECT-----TTCSSEEEEE
T ss_pred EEECC-C--CcEEEEecCccCCCceEEEEeCCCCEEEEE---CCCCEEEEEcCC-CCEEEEeCCC-----CccCCcEEEE
Confidence 99994 3 55555553 24789999999988876 667899999964 5555555310 0112234599
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCC--Cce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--DHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~ 1717 (1922)
++|+|++++++. .+||. +++.+..+.... ... .++++|+|+++++.. .+||. +++.+.++..+.
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence 999999888754 88996 566677775432 333 899999999888763 48885 477777776543
Q ss_pred c----eeEEEccCCCEEEEE
Q 000177 1718 Q----TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1718 ~----~sVaFSPdG~~LaSg 1733 (1922)
. ..++|+|+|+++++.
T Consensus 249 ~~~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp CCSCEEEEEEETTTEEEEEE
T ss_pred CCCcceeEEECCCCcEEEEC
Confidence 2 589999999866653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-09 Score=124.15 Aligned_cols=222 Identities=9% Similarity=0.090 Sum_probs=152.9
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C---
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S--- 1573 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D--- 1573 (1922)
...+..+.+|. ..+.+++|+++|++++++..++.|.+||..+++....+..+...+.++ .++++|++++++. +
T Consensus 34 ~~~~~~~~~~~-~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i--~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 34 AEPWLEISKKG-LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI--KIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp CEEEEEEESSC-CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEE--EECTTSCEEEEECTTSSS
T ss_pred cceeEEEeccC-ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceE--EECCCCcEEEEeCCCCCC
Confidence 34556677777 778999999999988899999999999998887665554567889999 8899999888864 4
Q ss_pred -CcEEEeccCCCCCCcceEec------cceeEEEcCCCCEEEEeecC---CCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1574 -QDVHLWNASSIAGGPMHSFE------GCKAARFSNSGNLFAALPTE---TSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1574 -gtVkLWDl~t~~gk~l~tf~------gh~sVaFSPDG~~LaSgS~~---S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+.|.+||..+ +.....+. ..+.+.|+|+|+++++...+ ...+.|..||..+++...... .
T Consensus 111 ~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~ 180 (333)
T 2dg1_A 111 TGGIFAATENG--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------N 180 (333)
T ss_dssp CCEEEEECTTS--CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--------E
T ss_pred CceEEEEeCCC--CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--------C
Confidence 5899999876 44332222 24789999999988876210 013556667766555433221 0
Q ss_pred CCcceEEEEcCCCCeE-eecc-----EEEEcCC-Ccceeee--------ccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1644 GHAYSQIHFSPSDTML-LWNG-----ILWDRRN-SVPVHRF--------DQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lL-aSgg-----rLWDlrt-gk~I~kf--------~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
......++|+|+|+.+ ++.. .+||+.+ +..+..+ .++ ... .++++++|+++++.. .+|
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 1123458999999854 4432 7888864 4433221 222 233 899999999777753 478
Q ss_pred ecCCCeEEEEEcCC--------CceeEEEccCCCEEEEEE
Q 000177 1703 DLRKFRLLRSVPSL--------DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1703 DLrTgklL~tl~gH--------~~~sVaFSPdG~~LaSgs 1734 (1922)
|. +++.+..+... ...+++|+|+|..|+.+.
T Consensus 260 d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 260 NK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp CT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 88 47777777643 237899999998887664
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-09 Score=125.09 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=153.2
Q ss_pred eEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHL 1578 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkL 1578 (1922)
+..+..+. ....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.++ .++++|+++++.. ++.|.+
T Consensus 20 ~~~l~~~~-~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l--~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 20 ARRLADGF-TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGH--CLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CEEEECCC-SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEE--EECTTCCEEEEETTTTEEEE
T ss_pred EEEEecCC-ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCccee--eECCCCcEEEEecCCCeEEE
Confidence 44555666 6788999999998 8889999999999999877 67777788889999 8899999988865 689999
Q ss_pred eccCCCCCCcceEec--------cceeEEEcCCCCEEEEeec-CC-------------CCCeEEEEECCCCceeeeeccc
Q 000177 1579 WNASSIAGGPMHSFE--------GCKAARFSNSGNLFAALPT-ET-------------SDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~--------gh~sVaFSPDG~~LaSgS~-~S-------------~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
||..+ ++...... ..+.++|+|+|+++++.+. ++ ..+.|..||.. ++......
T Consensus 95 ~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-- 169 (296)
T 3e5z_A 95 QREPG--GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-- 169 (296)
T ss_dssp ECSTT--CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC--
T ss_pred EcCCC--CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec--
Confidence 99976 44332211 1367999999998887310 01 13456666655 44322221
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcC-CCcc---eeeeccCCCce-EEEEecCCCEEEEEe---EEEe
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRR-NSVP---VHRFDQFTDHG-GGGFHPAGNEVIINS---EVWD 1703 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlr-tgk~---I~kf~gh~~~V-sVaFSPdG~~LASGS---eIWD 1703 (1922)
.....+.++|+|+|++++++. .+||+. +++. ...+..+.... +++++++|+..++.. .+||
T Consensus 170 ------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~ 243 (296)
T 3e5z_A 170 ------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLT 243 (296)
T ss_dssp ------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEEC
T ss_pred ------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEEC
Confidence 112234499999999886554 788886 5554 34442222333 899999999777654 4889
Q ss_pred cCCCeEEEEEcCCC-ceeEEE-ccCCCEEEEEEc
Q 000177 1704 LRKFRLLRSVPSLD-QTTITF-NARGDVIYAILR 1735 (1922)
Q Consensus 1704 LrTgklL~tl~gH~-~~sVaF-SPdG~~LaSgs~ 1735 (1922)
.. ++.+..+..+. .++++| +|+++.|+++..
T Consensus 244 ~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 244 PD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp TT-SCEEEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred CC-CCEEEEEECCCCceeEEEECCCCCEEEEEcC
Confidence 86 77888777554 478999 689998988753
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=9.9e-10 Score=131.25 Aligned_cols=261 Identities=11% Similarity=0.101 Sum_probs=169.3
Q ss_pred CCCEEEEEe------CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEEeccC
Q 000177 1520 DSSHIAVGS------HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHLWNAS 1582 (1922)
Q Consensus 1520 DG~lLASGS------~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkLWDl~ 1582 (1922)
+++++++.. .|+.|.+||..+++.+.++..+..+ .+ .|+||+++++++. +++|.+||..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i--~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HV--QVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EE--EECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ce--EECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 556666543 4789999999999998888766555 77 8999999888752 5679999998
Q ss_pred CCCCCcceEecc----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee-eccccccccCCCCcceEEE
Q 000177 1583 SIAGGPMHSFEG----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK-LSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1583 t~~gk~l~tf~g----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t-L~d~s~~~~~~gh~~~vVa 1651 (1922)
+ .+.+.++.. ...++|+|+|++++++.. +.+++|.+||+.+++.+.+ +..+ ....+.
T Consensus 90 t--~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~-~~~~~v~v~d~~~~~~~~~~i~~~---------~~~~v~ 157 (361)
T 2oiz_A 90 K--LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA-SPATSIGIVDVAKGDYVEDVTAAA---------GCWSVI 157 (361)
T ss_dssp T--CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEGGGT---------TEEEEE
T ss_pred C--CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC-CCCCeEEEEECCCCcEEEEEecCC---------CcceeE
Confidence 7 666666541 367999999999988722 2368999999999988877 6410 011133
Q ss_pred EcCCC-CeEeecc-----EEEEcCC-Ccce------eeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCe--EEE
Q 000177 1652 FSPSD-TMLLWNG-----ILWDRRN-SVPV------HRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFR--LLR 1711 (1922)
Q Consensus 1652 FSPdG-~lLaSgg-----rLWDlrt-gk~I------~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgk--lL~ 1711 (1922)
+.|++ ..+++.+ .+|++.. ++.. ..|......+.+.++|++..++..+ .+||+.... .+.
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 44443 2222111 3455543 4333 2333333344445567776555444 377775432 333
Q ss_pred EEcCCC------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceE
Q 000177 1712 SVPSLD------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVL 1779 (1922)
Q Consensus 1712 tl~gH~------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~ 1779 (1922)
.+.-.. ...++|+|+|..+|++...+..... .......+.+||..+.+.+.++.... .+
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~--------~~~~~~~v~viD~~t~~~v~~i~~~~-p~ 308 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT--------HKFPAAEIWVMDTKTKQRVARIPGRD-AL 308 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC--------TTCCCSEEEEEETTTTEEEEEEECTT-CC
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc--------ccCCCceEEEEECCCCcEEEEEecCC-ee
Confidence 322111 1248999999999987531211000 00123468899999999999999888 99
Q ss_pred EEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1780 DFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1780 dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
.++++|+++++.+.. . ..+.+|+...
T Consensus 309 ~ia~spdg~~l~v~n-----~--~~v~v~D~~t 334 (361)
T 2oiz_A 309 SMTIDQQRNLMLTLD-----G--GNVNVYDISQ 334 (361)
T ss_dssp EEEEETTTTEEEEEC-----S--SCEEEEECSS
T ss_pred EEEECCCCCEEEEeC-----C--CeEEEEECCC
Confidence 999999999888663 1 6688887643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-08 Score=129.55 Aligned_cols=290 Identities=12% Similarity=0.072 Sum_probs=191.8
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceeeeccCCCCeeEEEeeec----CCCc
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN--SSSPLESCTSHQAPVTLVQSHLS----GETQ 1566 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~--tgk~l~tL~gHss~VtsLq~afS----pDG~ 1566 (1922)
+...+.+.+.++... ..+..+.|||||++|++++.|+.|.+||+. +++.+.++.... ....+ .|+ |||+
T Consensus 182 iD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~i--a~s~~~~pDGk 256 (567)
T 1qks_A 182 IDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSI--ETSKMEGWEDK 256 (567)
T ss_dssp EETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEE--EECCSTTCTTT
T ss_pred EECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCcee--EEccccCCCCC
Confidence 334456666666543 357799999999999999999999999996 788887776433 34677 789 6999
Q ss_pred EEEEe--cCCcEEEeccCCCCCCcceEecc---------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1567 LLLSS--SSQDVHLWNASSIAGGPMHSFEG---------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1567 lLaSS--sDgtVkLWDl~t~~gk~l~tf~g---------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
+++++ .+++|.|||..+ .+++.++.- +..+.+++++..++... ...+.|.++|..+.+.
T Consensus 257 ~l~v~n~~~~~v~ViD~~t--~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~--~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 257 YAIAGAYWPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV--KETGKILLVDYTDLNN 332 (567)
T ss_dssp EEEEEEEETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEETTCSSE
T ss_pred EEEEEEccCCeEEEEECCC--CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe--cCCCeEEEEecCCCcc
Confidence 88875 389999999887 666665431 13566777766554442 5679999999887543
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeecc-CCCc----eEEEEecCCCEE-EE
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQ-FTDH----GGGGFHPAGNEV-II 1697 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~g-h~~~----VsVaFSPdG~~L-AS 1697 (1922)
..... . ..+.....+.|+|+|++++++. .+||+.+++.+..+.- ...+ ....++|++..+ ++
T Consensus 333 ~~v~~---i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t 406 (567)
T 1qks_A 333 LKTTE---I---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 406 (567)
T ss_dssp EEEEE---E---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred ceeee---e---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEe
Confidence 32211 0 0122223478999999887544 8999999988777654 2211 122368985544 44
Q ss_pred Ee------EEEecCC-------CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEe
Q 000177 1698 NS------EVWDLRK-------FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVD 1762 (1922)
Q Consensus 1698 GS------eIWDLrT-------gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~D 1762 (1922)
+. .+||..+ ++.+++++.... ..+.++|+++++++...-+-+. ....++.++|
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~------------~~~~~v~v~d 474 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA------------EISGSVAVFD 474 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH------------HHHTCEEEEE
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc------------ccCceEEEEE
Confidence 42 3899988 789999985533 5689999999999874211100 0124567777
Q ss_pred cCCC-----ce-eeeec---------cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1763 AINY-----SD-IATIP---------VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1763 a~dy-----s~-IaTid---------vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
..+. .. +..+. ..+.+..+.++|+|.++.+...... +..+.|-+++.
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~-~~~~~i~v~D~ 536 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGK-DQESALVVVDD 536 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCT-TSCCEEEEEET
T ss_pred CCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCC-CCCCcEEEEEC
Confidence 6665 21 12232 2457899999999999887643221 11245556653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=135.79 Aligned_cols=211 Identities=8% Similarity=-0.011 Sum_probs=138.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeE---EE--------------eeecCCCcEEEEe----
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTL---VQ--------------SHLSGETQLLLSS---- 1571 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vts---Lq--------------~afSpDG~lLaSS---- 1571 (1922)
..+.|+|||++|+.++.++.|++||+.+++....+..+...... |. ..|+|+++.++..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 34789999999999999999999999988876666555443322 10 1567888776552
Q ss_pred --cCCcEEEeccCCCCCCcceEecc---ceeEEEcC-CCCEEEEeecCCCC---CeEEEEECCCCceeeeeccccccccC
Q 000177 1572 --SSQDVHLWNASSIAGGPMHSFEG---CKAARFSN-SGNLFAALPTETSD---RGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1572 --sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSP-DG~~LaSgS~~S~D---gtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
.+..|.+||+.+ ++....... +..+.|+| +++.|+.++.+..+ ..|.+||+.+++.. .+.. ..
T Consensus 164 ~~~~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~-----~~ 235 (396)
T 3c5m_A 164 TNPTCRLIKVDIET--GELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE-----HA 235 (396)
T ss_dssp TCCCEEEEEEETTT--CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC-----CC
T ss_pred CCCcceEEEEECCC--CcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec-----cC
Confidence 356799999987 554333322 36789999 78877776432211 57899998765532 2320 00
Q ss_pred CCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeeccCCCceEEEEec-CCCEEEEEe------------
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQFTDHGGGGFHP-AGNEVIINS------------ 1699 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~gh~~~VsVaFSP-dG~~LASGS------------ 1699 (1922)
.......+.|+|+|++|+..+ .+||+.+++...... ... ..+.|+| +|+++++++
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CSHLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EEEEEECSSSSEEEEEECCC---------
T ss_pred CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CCCCccCCCCceEEEecCCcceeeccccc
Confidence 012233489999999776442 788988876433221 122 2389999 999888631
Q ss_pred ---------EEEecCCCeEEEEEcCCC-------------ceeEEEccCCCEEEEEE
Q 000177 1700 ---------EVWDLRKFRLLRSVPSLD-------------QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 ---------eIWDLrTgklL~tl~gH~-------------~~sVaFSPdG~~LaSgs 1734 (1922)
.+||+.+++.. .+..+. ...+.|+|+|+.|+.+.
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp -CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred cccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence 37888877643 333222 24689999999988774
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-09 Score=122.72 Aligned_cols=251 Identities=11% Similarity=0.106 Sum_probs=164.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
..|+++.|++++..++..+.++.++.| .++....+..+...+.++ .|++++++++++ .++.|.+||..+ ++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~g~l~~~~~~~~~i~~~d~~~--~~~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGL--NFDRQGQLFLLDVFEGNIFKINPET--KEI 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEE--EECTTSCEEEEETTTCEEEEECTTT--CCE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCc--EECCCCCEEEEECCCCEEEEEeCCC--CcE
Confidence 457888999988888888889999999 455666777777788899 789999988775 488999999986 444
Q ss_pred ceEe----ccceeEEEcCCCCEEEEeecCCCC----CeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1589 MHSF----EGCKAARFSNSGNLFAALPTETSD----RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1589 l~tf----~gh~sVaFSPDG~~LaSgS~~S~D----gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
...+ ....+++|+|+|+++++. ..+ +.|.+||..++.....+... ..+.....++++|+|++++
T Consensus 79 ~~~~~~~~~~~~~i~~~~dg~l~v~~---~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~i~~d~~g~l~v 150 (333)
T 2dg1_A 79 KRPFVSHKANPAAIKIHKDGRLFVCY---LGDFKSTGGIFAATENGDNLQDIIEDL-----STAYCIDDMVFDSKGGFYF 150 (333)
T ss_dssp EEEEECSSSSEEEEEECTTSCEEEEE---CTTSSSCCEEEEECTTSCSCEEEECSS-----SSCCCEEEEEECTTSCEEE
T ss_pred EEEeeCCCCCcceEEECCCCcEEEEe---CCCCCCCceEEEEeCCCCEEEEEEccC-----ccCCcccceEECCCCCEEE
Confidence 3322 124789999999988876 444 68999999887764333210 1223445599999999888
Q ss_pred ec---------cEEEEcC--CCcceeeeccCCCceEEEEecCCCEEEEEe------EEEecCC-CeEEE--------EEc
Q 000177 1661 WN---------GILWDRR--NSVPVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRK-FRLLR--------SVP 1714 (1922)
Q Consensus 1661 Sg---------grLWDlr--tgk~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrT-gklL~--------tl~ 1714 (1922)
+. +.||.+. +++.............++|+|+|++|+.+. .+||+.+ +..+. .+.
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred EeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 64 2566654 333332222222233899999998665443 3788863 33222 122
Q ss_pred CCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-------ceEEEEEcCC
Q 000177 1715 SLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-------CVLDFATERT 1786 (1922)
Q Consensus 1715 gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-------~I~dLa~SPd 1786 (1922)
++.. ..++++++|+++++....+ .+..++. +...+..+.... .+..++|+|+
T Consensus 231 ~~~~~~~i~~d~~G~l~v~~~~~~-------------------~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 231 GHEGPDSCCIDSDDNLYVAMYGQG-------------------RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp SSSEEEEEEEBTTCCEEEEEETTT-------------------EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred CCCCCCceEECCCCCEEEEEcCCC-------------------EEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 2222 6899999998777663222 2334443 223333333322 4788999998
Q ss_pred CceEEEEec
Q 000177 1787 DSFVGLITM 1795 (1922)
Q Consensus 1787 ds~LAVVe~ 1795 (1922)
+..|.+...
T Consensus 291 g~~L~v~~~ 299 (333)
T 2dg1_A 291 TNQLIICSN 299 (333)
T ss_dssp SCEEEEEEE
T ss_pred CCEEEEEeC
Confidence 877776653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.6e-10 Score=142.12 Aligned_cols=214 Identities=14% Similarity=0.055 Sum_probs=146.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCc----
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTK-----ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQD---- 1575 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DG-----tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgt---- 1575 (1922)
+|. ..+..++|||||++|+.++.++ +|++||+.+++.+.....+. .+..+ +|+|||+.|+.+ .++.
T Consensus 122 ~~~-~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~--~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGT-VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCM--AWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSC-EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCE--EECTTSSEEEEEECCCCSSCC
T ss_pred CCC-EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceE--EEEeCCCEEEEEEECCccccc
Confidence 354 4688999999999998877654 89999999998765432222 26677 899999988774 4544
Q ss_pred ------------EEEeccCCCCCCc--ceEecc------ceeEEEcCCCCEEEEeecCCC--CCeEEEEECCC------C
Q 000177 1576 ------------VHLWNASSIAGGP--MHSFEG------CKAARFSNSGNLFAALPTETS--DRGILLYDIQT------Y 1627 (1922)
Q Consensus 1576 ------------VkLWDl~t~~gk~--l~tf~g------h~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrT------g 1627 (1922)
|++|++.+ +.. ...+.. ...+.|+|||++|+.++..+. +..|++||+.+ +
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t--~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGT--DQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTS--CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCCCEEEEEECCC--CcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 99999987 332 222222 257899999999888754332 67899999987 5
Q ss_pred c-eeeeeccccccccCCCCcceEEEEcCCCCeEeecc---------EEEEcCCCc--ceeeeccCCC--ce-EEEEecCC
Q 000177 1628 Q-LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---------ILWDRRNSV--PVHRFDQFTD--HG-GGGFHPAG 1692 (1922)
Q Consensus 1628 k-~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---------rLWDlrtgk--~I~kf~gh~~--~V-sVaFSPdG 1692 (1922)
. ....+.. ........|+|+|+.|+..+ .+||+.++. ....+..+.. .+ .+.|++++
T Consensus 276 ~~~~~~l~~--------~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 276 ILKWVKLID--------NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SCCCEEEEC--------SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred ccceEEeeC--------CCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 3 3444431 11111245889998776322 678887764 2345555544 45 78898777
Q ss_pred CEEEEEe-------EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1693 NEVIINS-------EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1693 ~~LASGS-------eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.++++.. .+|++.+++.++.+..+.. ..+.++|+++.++..
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence 7777766 2678777888888876644 578899999877644
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.2e-09 Score=121.22 Aligned_cols=229 Identities=5% Similarity=0.045 Sum_probs=142.8
Q ss_pred CEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C---Cc--
Q 000177 1511 LLTCITFLGDSSHIAVGS---------HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S---QD-- 1575 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS---------~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D---gt-- 1575 (1922)
.+...+| ||++|+... .++.|.+||+.+++.. .+ ..+..+ .|||||+.|+... + +.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~--~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMP--RISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEE--EECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCe--EECCCCCEEEEEEeccCCCcce
Confidence 4667777 888877642 3678999999887753 33 457778 8999999888743 2 33
Q ss_pred EEEeccCCCCCCcceEe--ccceeEEEcCCCCEEEEeecC------------------------CCCCeEEEEECCCCce
Q 000177 1576 VHLWNASSIAGGPMHSF--EGCKAARFSNSGNLFAALPTE------------------------TSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf--~gh~sVaFSPDG~~LaSgS~~------------------------S~DgtIrIWDlrTgk~ 1629 (1922)
|.+||+.+ ++..... ..+..+.|+|+|+.|+.++.. .....|.+||+.+++.
T Consensus 87 l~~~~~~~--g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 87 IWVADLET--LSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEETTT--TEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred EEEEECCC--CceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 77778775 4433222 225788999999998887421 0135799999998887
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeec-----------c-EEEEcCCCcceeeeccCCCceEEEEecCCCEEEE
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN-----------G-ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg-----------g-rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LAS 1697 (1922)
+..+.. . ....+.|+|+| ++++. . .||.+.+++ +..+..+ ..+ ..++|+|++|+.
T Consensus 165 ~~~l~~--------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~-~~~spdg~~l~~ 231 (347)
T 2gop_A 165 IEEFEK--------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSF-YAVDSDGERILL 231 (347)
T ss_dssp EEEEEE--------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESE-EEEEECSSCEEE
T ss_pred EeeecC--------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cce-eeECCCCCEEEE
Confidence 555541 1 34458999999 76654 2 566666444 3344333 333 233999998876
Q ss_pred Ee-----------EEEecCCCeEEEEEcCCCc--ee-EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEec
Q 000177 1698 NS-----------EVWDLRKFRLLRSVPSLDQ--TT-ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDA 1763 (1922)
Q Consensus 1698 GS-----------eIWDLrTgklL~tl~gH~~--~s-VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da 1763 (1922)
.+ +||-+.+++.......+.. .. +.|+ +| +++++..+... .+. ++
T Consensus 232 ~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~-----------------~l~-~~- 290 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV-----------------NLY-IW- 290 (347)
T ss_dssp EECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE-----------------EEE-EE-
T ss_pred EEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE-----------------EEE-Ec-
Confidence 65 3554445555443444443 44 8999 88 66666432211 122 22
Q ss_pred CCCceeeeeccCCceEEEEEcC
Q 000177 1764 INYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1764 ~dys~IaTidvkr~I~dLa~SP 1785 (1922)
+......+.....|.+++|+|
T Consensus 291 -~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 291 -DGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp -SSSEEEEECSSSEEEEEEESS
T ss_pred -CCceEEEecCCCeEEeeeeeC
Confidence 222222333456688999999
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-09 Score=136.16 Aligned_cols=223 Identities=9% Similarity=-0.012 Sum_probs=138.2
Q ss_pred eeEEecCCCCCCEE---------EEEEc--CCCCE-EEEEeC-CCcEEEEECC--CCCceeeecc-----CCCCeeEEEe
Q 000177 1500 PWRTCRDDAGALLT---------CITFL--GDSSH-IAVGSH-TKELKIFDSN--SSSPLESCTS-----HQAPVTLVQS 1559 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt---------~LaFS--PDG~l-LASGS~-DGtIkIWDl~--tgk~l~tL~g-----Hss~VtsLq~ 1559 (1922)
..+.+..|. ..+. ...|+ |||++ |+..+. +..|.+|++. .......+.. |...+..+
T Consensus 59 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~-- 135 (662)
T 3azo_A 59 AEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADP-- 135 (662)
T ss_dssp CEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEE--
T ss_pred CcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCc--
Confidence 345566665 4555 55565 99998 776554 5667777765 2034455655 66778888
Q ss_pred eecCCCcEEEEe-cC----------CcEEEeccCCCCC---CcceEec-c----ceeEEEcCCCCEEEEeecCC-----C
Q 000177 1560 HLSGETQLLLSS-SS----------QDVHLWNASSIAG---GPMHSFE-G----CKAARFSNSGNLFAALPTET-----S 1615 (1922)
Q Consensus 1560 afSpDG~lLaSS-sD----------gtVkLWDl~t~~g---k~l~tf~-g----h~sVaFSPDG~~LaSgS~~S-----~ 1615 (1922)
+|+|||+.|+++ .+ .+|++||+.+... .....+. . ...++|+|||++|+.++... .
T Consensus 136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 899999988874 34 4799999975100 2233333 2 36789999999998874322 1
Q ss_pred CCeEEEEECC-CCc--eeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----E--EEEcCCCcceeeeccCCCc--
Q 000177 1616 DRGILLYDIQ-TYQ--LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----I--LWDRRNSVPVHRFDQFTDH-- 1683 (1922)
Q Consensus 1616 DgtIrIWDlr-Tgk--~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----r--LWDlrtgk~I~kf~gh~~~-- 1683 (1922)
...|++||+. +++ ....+. ..+......+.|+|||++++++. . +||+.+++.......+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 289 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLL------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG 289 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEE------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred CcEEEEEEECCCCcccccEEeC------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence 2589999999 562 223332 01123344589999999776554 4 4555466544433332221
Q ss_pred ------e-EEEEecCCCEEEEEe----EEE--ecCCCeEEEEEcCCCceeEEE-ccCCCEEEE
Q 000177 1684 ------G-GGGFHPAGNEVIINS----EVW--DLRKFRLLRSVPSLDQTTITF-NARGDVIYA 1732 (1922)
Q Consensus 1684 ------V-sVaFSPdG~~LASGS----eIW--DLrTgklL~tl~gH~~~sVaF-SPdG~~LaS 1732 (1922)
+ .+.|+|++.++++++ +|| |+.+++ ++.+..+....-.+ ++++..++.
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~ 351 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVG 351 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEE
T ss_pred ccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEE
Confidence 2 688999999998874 688 655555 67777665422222 666665543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-09 Score=121.48 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=127.9
Q ss_pred CEEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C-----------
Q 000177 1511 LLTCITFLGDSSHIAVGSHT---K--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S----------- 1573 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~D---G--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D----------- 1573 (1922)
.+.+++|||||++|+..+.+ + .|.+|++.+++.......+ . +..+ .|+|||+.|+.+. +
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~--~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSL--EWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEE--EECTTSSEEEEEEECCCC--------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccce--eECCCCCEEEEEEccCCCcCCcEEEc
Confidence 37789999999999988764 3 4888898887765544433 3 8888 8899999887743 2
Q ss_pred ----------------CcEEEeccCCCCCCcceEec--cceeEEEcCCCCEEEEeecCCC-C--C-eEEEEECCCCceee
Q 000177 1574 ----------------QDVHLWNASSIAGGPMHSFE--GCKAARFSNSGNLFAALPTETS-D--R-GILLYDIQTYQLEA 1631 (1922)
Q Consensus 1574 ----------------gtVkLWDl~t~~gk~l~tf~--gh~sVaFSPDG~~LaSgS~~S~-D--g-tIrIWDlrTgk~i~ 1631 (1922)
..|.+||+.+ ++.+..+. .+..+.|+|+| +++++..+.. . . ...||.+.+++. .
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~--~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~ 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTES--EEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-E 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTT--TEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-E
T ss_pred ccceeecCcccccCccceEEEEECCC--CeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-E
Confidence 4689999976 54423332 46789999999 7666632211 0 1 334444445543 3
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEeecc-----------EEEEcCCCcceeeeccCCCce-E-EEEecCCCEEEEE
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----------ILWDRRNSVPVHRFDQFTDHG-G-GGFHPAGNEVIIN 1698 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----------rLWDlrtgk~I~kf~gh~~~V-s-VaFSPdG~~LASG 1698 (1922)
.+. .+ .....++|+|++|+..+ .||-+.+++....+..+...+ . +.|+ +| .++++
T Consensus 212 ~l~---------~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 212 KMF---------EK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp EEE---------EE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred Eec---------cC-cceeeECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEE
Confidence 333 12 33344599999876322 344443555444444555556 4 8999 88 77776
Q ss_pred e-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1699 S-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1699 S-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
+ +|| +.+++....+.+ .. .+++|+| .+++++.
T Consensus 280 ~~~~~~~l~-~~~g~~~~~~~~-~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEIKPIAKG-RHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp EETTEEEEE-EESSSEEEEECS-SSEEEEEEESS--SEEEEEE
T ss_pred ecCCcEEEE-EcCCceEEEecC-CCeEEeeeeeC--cEEEEEc
Confidence 6 499 887766554443 33 6889999 5666653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.1e-09 Score=120.40 Aligned_cols=202 Identities=14% Similarity=0.115 Sum_probs=156.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCC-CCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQ-APVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG---- 1594 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHs-s~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g---- 1594 (1922)
.+++|++++.|+.|++||..+|+.+.++..|. ..++++ .++|+|++++ +.++.|..||. + ++.+.++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~--~~~pdG~ilv-s~~~~V~~~d~-~--G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSV--AATKAGEILF-SYSKGAKMITR-D--GRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEE--EECTTSCEEE-ECBSEEEEECT-T--SCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCe--EECCCCCEEE-eCCCCEEEECC-C--CCEEEEEcCCCCc
Confidence 46899999999999999999999999998766 578888 7899999999 56788999998 5 777877764
Q ss_pred -ceeEEEcCCCCEEEEeecCCC-CCeEEEEECCCCceeeeeccccccccCCCC-cceEEEEcCCCCeEeecc-----EEE
Q 000177 1595 -CKAARFSNSGNLFAALPTETS-DRGILLYDIQTYQLEAKLSDTSVNLTGRGH-AYSQIHFSPSDTMLLWNG-----ILW 1666 (1922)
Q Consensus 1595 -h~sVaFSPDG~~LaSgS~~S~-DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh-~~~vVaFSPdG~lLaSgg-----rLW 1666 (1922)
+.++.+.++|+++++. +. ++.|..+|. +|+.+.++.-..... ..| ....+++.++|+++++.. ..|
T Consensus 78 ~~~~~~~~~dG~~lv~~---~~~~~~v~~vd~-~Gk~l~~~~~~~~~~--~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 78 EMQTARILPDGNALVAW---CGHPSTILEVNM-KGEVLSKTEFETGIE--RPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEEEECTTSCEEEEE---ESTTEEEEEECT-TSCEEEEEEECCSCS--SGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred cccccEECCCCCEEEEe---cCCCCEEEEEeC-CCCEEEEEeccCCCC--cccccccCceECCCCCEEEEecCCCEEEEE
Confidence 2568899999999987 44 677888886 688777764111000 011 112267899999999765 899
Q ss_pred EcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC--------ceeEEEccCCCEEEEE
Q 000177 1667 DRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD--------QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1667 Dlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~--------~~sVaFSPdG~~LaSg 1733 (1922)
|.. |+.+.++.......++.+.++|+.+++++ ..||..+++.+.++.... ...+...++|.++++.
T Consensus 152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 987 99999998765555888899999998877 378888899998886331 1577888999888877
Q ss_pred E
Q 000177 1734 L 1734 (1922)
Q Consensus 1734 s 1734 (1922)
+
T Consensus 231 ~ 231 (276)
T 3no2_A 231 W 231 (276)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-08 Score=125.43 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=177.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---
Q 000177 1519 GDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG--- 1594 (1922)
Q Consensus 1519 PDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g--- 1594 (1922)
+.+.++++...+++|.+||..+++.+.++... ..+..+ .|+|||+++++ +.|+.|.+||+.....+.+.++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v--~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHIS--RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEE--EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccce--EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence 45567788888999999999999999888633 356688 89999998877 558999999995111566666642
Q ss_pred ceeEEEc----CCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC-CC---cceEEEEcCCCCeEeec----
Q 000177 1595 CKAARFS----NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR-GH---AYSQIHFSPSDTMLLWN---- 1662 (1922)
Q Consensus 1595 h~sVaFS----PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~-gh---~~~vVaFSPdG~lLaSg---- 1662 (1922)
...++|+ |+|++++++. ..+++|.+||..+.+.+.++.-........ .| ....+.+++++..++..
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n--~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGA--YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEE--EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CceeEEccccCCCCCEEEEEE--ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 3789999 6999988873 456999999999999988875211100000 01 22337778887655533
Q ss_pred c--EEEEcCCCcc--eeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcC-----CCceeEE-EccC
Q 000177 1663 G--ILWDRRNSVP--VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPS-----LDQTTIT-FNAR 1726 (1922)
Q Consensus 1663 g--rLWDlrtgk~--I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~g-----H~~~sVa-FSPd 1726 (1922)
+ .++|..+.+. +..+......-.+.|+|+|++++++. .+||+.+++++..++- |...... ++|+
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~ 399 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT 399 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCC
Confidence 2 5666655432 22332222222789999999988776 3999999999888764 3223333 5887
Q ss_pred CCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-------CceeeeeccCC-ceEEEEEcCCCceEEEEecCCC
Q 000177 1727 GDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-------YSDIATIPVDR-CVLDFATERTDSFVGLITMDDQ 1798 (1922)
Q Consensus 1727 G~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-------ys~IaTidvkr-~I~dLa~SPdds~LAVVe~dds 1798 (1922)
+..+++...-. ...+.+++..+ ++.+.++.... .-..+..+|+++++.|-.....
T Consensus 400 ~g~v~~t~~~g-----------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 400 FGPVWATSHMG-----------------DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp TEEEEEEEBSS-----------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS
T ss_pred CCcEEEeCCCC-----------------CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC
Confidence 55555442211 13455666554 67777777643 2355778999998887531110
Q ss_pred C-CccceEEEEEecC
Q 000177 1799 E-DMFSSARIYEIGR 1812 (1922)
Q Consensus 1799 ~-d~dSsVRLyEVGr 1812 (1922)
+ +....|.++++..
T Consensus 463 ~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 463 EAEISGSVAVFDIKA 477 (567)
T ss_dssp SHHHHTCEEEEEGGG
T ss_pred CcccCceEEEEECCc
Confidence 1 1135677887643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-08 Score=117.34 Aligned_cols=249 Identities=9% Similarity=0.029 Sum_probs=163.3
Q ss_pred CCCcEEEEECCCCCceeeec------cCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---ceeE
Q 000177 1529 HTKELKIFDSNSSSPLESCT------SHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG---CKAA 1598 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~------gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---h~sV 1598 (1922)
.+++|.+||..+++....+. ........+ .+. +++++++ ..+++|.+||..+ ++.+.++.. .+.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i--~~~-~~~lyv~~~~~~~v~viD~~t--~~~~~~i~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSM--VIR-DGIGWIVVNNSHVIFAIDINT--FKEVGRITGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEE--EEE-TTEEEEEEGGGTEEEEEETTT--CCEEEEEECCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEE--EEE-CCEEEEEEcCCCEEEEEECcc--cEEEEEcCCCCCCcEE
Confidence 48999999999988765541 122345677 554 3445555 4589999999998 777777653 4789
Q ss_pred EEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec---c---EEEEcCCCc
Q 000177 1599 RFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN---G---ILWDRRNSV 1672 (1922)
Q Consensus 1599 aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg---g---rLWDlrtgk 1672 (1922)
+|+++++.+++. ..++.|.+||..+++...++..... ....+....+++ .++.+++++ + .+||+.+++
T Consensus 90 ~~~~~g~lyv~~---~~~~~v~~iD~~t~~~~~~i~~g~~--~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 90 HFLSDEKAYVTQ---IWDYRIFIINPKTYEITGYIECPDM--DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEETTEEEEEE---BSCSEEEEEETTTTEEEEEEECTTC--CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE
T ss_pred EEeCCCeEEEEE---CCCCeEEEEECCCCeEEEEEEcCCc--cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe
Confidence 999998655554 3689999999999988877751110 000002222666 556666653 2 799999999
Q ss_pred ceeeeccCCCceEEEEecCCCEEEEEe---------------EEEecCCCeEEEEEcC---CCceeEEEccCCCEEEEEE
Q 000177 1673 PVHRFDQFTDHGGGGFHPAGNEVIINS---------------EVWDLRKFRLLRSVPS---LDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1673 ~I~kf~gh~~~VsVaFSPdG~~LASGS---------------eIWDLrTgklL~tl~g---H~~~sVaFSPdG~~LaSgs 1734 (1922)
.+.++........+.++|+|++++++. .+||..++++..++.- ...+.++|+|+|+.|+.+.
T Consensus 164 ~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 164 VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 888887655555889999999777652 2788889998877763 2348999999999999872
Q ss_pred ccCchhhhhhhcccccccCCcceEEEEecCCCceee--eecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1735 RRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA--TIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1735 ~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia--Tidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
. .+..+|..+.+.+. .+.. ......++++|++..+.+....+. .....|.+|+.
T Consensus 244 ~---------------------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y-~~~~~V~v~d~ 300 (328)
T 3dsm_A 244 N---------------------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY-QQQGIVYRYSP 300 (328)
T ss_dssp S---------------------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS-SSEEEEEEECT
T ss_pred c---------------------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc-ccCCEEEEECC
Confidence 1 23445554433221 1111 345788999997777776642111 11245666653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-08 Score=116.66 Aligned_cols=206 Identities=11% Similarity=0.036 Sum_probs=144.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
....+.+. ++++.++...++.|.+||..+++.+.++.. ......+ +++++++++++. .++.|.+||..+ ++..
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i--~~~~~g~lyv~~~~~~~v~~iD~~t--~~~~ 118 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYI--HFLSDEKAYVTQIWDYRIFIINPKT--YEIT 118 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEE--EEEETTEEEEEEBSCSEEEEEETTT--TEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEE--EEeCCCeEEEEECCCCeEEEEECCC--CeEE
Confidence 46777774 345556666689999999999999888853 4567888 788888777776 689999999987 5555
Q ss_pred eEec---------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1590 HSFE---------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1590 ~tf~---------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
.++. ....+++ ++..++.+.. +.+++|.+||+.+++.+.++. .+.....+.++|+|++++
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~~~~v~viD~~t~~~~~~i~--------~g~~p~~i~~~~dG~l~v 187 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCW-SYQNRILKIDTETDKVVDELT--------IGIQPTSLVMDKYNKMWT 187 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE--ETTEEEEEEC-TTCCEEEEEETTTTEEEEEEE--------CSSCBCCCEECTTSEEEE
T ss_pred EEEEcCCccccCCCcceEEE--ECCEEEEEcC-CCCCEEEEEECCCCeEEEEEE--------cCCCccceEEcCCCCEEE
Confidence 5543 2346777 3444444411 147899999999999888775 122233488999999877
Q ss_pred ec-------------c--EEEEcCCCcceeeeccCC--CceEEEEecCCCEEEEEe---EEEecCCCeEEEE--EcC--C
Q 000177 1661 WN-------------G--ILWDRRNSVPVHRFDQFT--DHGGGGFHPAGNEVIINS---EVWDLRKFRLLRS--VPS--L 1716 (1922)
Q Consensus 1661 Sg-------------g--rLWDlrtgk~I~kf~gh~--~~VsVaFSPdG~~LASGS---eIWDLrTgklL~t--l~g--H 1716 (1922)
++ + .+||..+++.+..+.... .+..++|+|++++|.+.. .+||..+++.... +.. .
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~ 267 (328)
T 3dsm_A 188 ITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDT 267 (328)
T ss_dssp EBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSS
T ss_pred EECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCCC
Confidence 43 3 688988888777775432 344999999999887765 3788887775421 221 2
Q ss_pred CceeEEEccCCCEEEEE
Q 000177 1717 DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1717 ~~~sVaFSPdG~~LaSg 1733 (1922)
....++++|++..|+.+
T Consensus 268 ~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp CEEEEEECTTTCCEEEE
T ss_pred ceEEEEEcCCCCeEEEE
Confidence 22789999966666655
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-08 Score=116.56 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=132.1
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-ceeee---------ccCCCCeeEEEeeecC-CCcEEEEe--c
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-PLESC---------TSHQAPVTLVQSHLSG-ETQLLLSS--S 1572 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-~l~tL---------~gHss~VtsLq~afSp-DG~lLaSS--s 1572 (1922)
++. .....++|+++|+++++.+.++.|++||..... .+.++ .++-...+.| +++| ++.++++. .
T Consensus 88 ~~~-~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i--a~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 88 NLF-YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV--AVEPSTGAVFVSDGYC 164 (329)
T ss_dssp TTC-SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE--EECTTTCCEEEEECSS
T ss_pred Ccc-CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE--EEeCCCCeEEEEeCCC
Confidence 354 678999999999999999999999999985442 55555 3455578899 8999 89998885 4
Q ss_pred CCcEEEeccCCCCCCcceEec--------------cceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1573 SQDVHLWNASSIAGGPMHSFE--------------GCKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~--------------gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
++.|++||.. +..+..+. ..+.++|+|+ ++.+++. ..++.|++||..+++.+.++..+
T Consensus 165 ~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d---~~~~~I~~~~~~~G~~~~~~~~~- 237 (329)
T 3fvz_A 165 NSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD---RENGRIQCFKTDTKEFVREIKHA- 237 (329)
T ss_dssp CCEEEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE---TTTTEEEEEETTTCCEEEEECCT-
T ss_pred CCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE---CCCCEEEEEECCCCcEEEEEecc-
Confidence 8999999953 56565553 1478999998 6666665 77899999999999988887511
Q ss_pred ccccCCCCcceEEEEcC------CCCeEeecc-----EEEEcCCCcceeeec---cCCCce-EEEEecCCCEEEEEe
Q 000177 1638 VNLTGRGHAYSQIHFSP------SDTMLLWNG-----ILWDRRNSVPVHRFD---QFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSP------dG~lLaSgg-----rLWDlrtgk~I~kf~---gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
..+.....++|+| +|+.++++. ++||+.+++.+..+. .+.... .++|+|+|..+++..
T Consensus 238 ----~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 238 ----SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp ----TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred ----ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence 1223334588888 444333322 799999999998884 333434 999999996666654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-08 Score=125.10 Aligned_cols=263 Identities=8% Similarity=-0.009 Sum_probs=157.9
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCCceeee------ccCCCCeeEEEeeecCCCcEEEEe-c-CC----cEEEecc
Q 000177 1519 GDSSHIAVGSHTK-----ELKIFDSNSSSPLESC------TSHQAPVTLVQSHLSGETQLLLSS-S-SQ----DVHLWNA 1581 (1922)
Q Consensus 1519 PDG~lLASGS~DG-----tIkIWDl~tgk~l~tL------~gHss~VtsLq~afSpDG~lLaSS-s-Dg----tVkLWDl 1581 (1922)
|+|++++....++ .|.+.+...++....+ .+|...+..+ .|||||++|+.+ + .| +|++||+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~--~~SPDg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGY--AFSEDGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEE--EECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEE--EECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 6666665444322 3333444344432222 2354557777 899999999874 2 22 8999999
Q ss_pred CCCCCCcce-Eecc--ceeEEEcCCCCEEEEeecCCC-------------CCeEEEEECCCCcee--eeeccccccccCC
Q 000177 1582 SSIAGGPMH-SFEG--CKAARFSNSGNLFAALPTETS-------------DRGILLYDIQTYQLE--AKLSDTSVNLTGR 1643 (1922)
Q Consensus 1582 ~t~~gk~l~-tf~g--h~sVaFSPDG~~LaSgS~~S~-------------DgtIrIWDlrTgk~i--~tL~d~s~~~~~~ 1643 (1922)
.+ ++.+. ++.. ...++|+|||+.|+.++.... ...|++|++.+++.. ..+. ..
T Consensus 159 ~t--g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~-------~~ 229 (710)
T 2xdw_A 159 DG--AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE-------FP 229 (710)
T ss_dssp TT--TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC-------CT
T ss_pred CC--CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec-------cC
Confidence 87 55543 2222 367999999999998843322 234999999987632 2222 11
Q ss_pred CCcc--eEEEEcCCCCeEeecc----------EEEEcCC------Cc-ceeeeccCCCceEEEEecCCCEEEEEe-----
Q 000177 1644 GHAY--SQIHFSPSDTMLLWNG----------ILWDRRN------SV-PVHRFDQFTDHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1644 gh~~--~vVaFSPdG~lLaSgg----------rLWDlrt------gk-~I~kf~gh~~~VsVaFSPdG~~LASGS----- 1699 (1922)
.+.. ..+.|+|+|++|+..+ .+||+.+ +. .+..+..+...+...|+|+|..|+..+
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCT
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCC
Confidence 2332 3489999999887321 7889886 53 466676666666556999999887665
Q ss_pred --E--EEecCCCe--EEEEEcCC-C---ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee
Q 000177 1700 --E--VWDLRKFR--LLRSVPSL-D---QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI 1769 (1922)
Q Consensus 1700 --e--IWDLrTgk--lL~tl~gH-~---~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I 1769 (1922)
+ +||+.++. ..+.+..+ . ...+.|++++.++++...+.. ..+.+++..+.+.+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~-----------------~~l~~~~~~~g~~~ 372 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK-----------------NTLQLHDLATGALL 372 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE-----------------EEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE-----------------EEEEEEECCCCCEE
Confidence 2 67887764 12334333 3 157889877666666632221 22344554333333
Q ss_pred eeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1770 ATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1770 aTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+.. ...+..++++|++..+.+.-... .....+.+|++.
T Consensus 373 ~~l~~~~~~v~~~~~s~d~~~l~~~~ss~--~~P~~i~~~d~~ 413 (710)
T 2xdw_A 373 KIFPLEVGSVVGYSGQKKDTEIFYQFTSF--LSPGIIYHCDLT 413 (710)
T ss_dssp EEECCCSSEEEEEECCTTCSEEEEEEECS--SCCCEEEEEETT
T ss_pred EecCCCCceEEEEecCCCCCEEEEEEeCC--CCCCEEEEEECC
Confidence 44433 34578889999887776553222 223567777764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-08 Score=110.02 Aligned_cols=208 Identities=7% Similarity=-0.058 Sum_probs=135.7
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
...+++++++|++++ +.+.++.|.+||..++........+...+.+| +++++++++++..++.|.+||... . ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i--~~~~~g~l~v~~~~~~i~~~d~~~--~-~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGL--AVDGAGTVYVTDFNNRVVTLAAGS--N-NQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCE--EECTTCCEEEEETTTEEEEECTTC--S-CC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCccee--EECCCCCEEEEcCCCEEEEEeCCC--c-eE
Confidence 578999999999777 55788999999986654433223344567888 789999988886688999999875 2 22
Q ss_pred eEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-
Q 000177 1590 HSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG- 1663 (1922)
Q Consensus 1590 ~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg- 1663 (1922)
..+ .....++++++|+.+++. ..++.|.+||..+........ ........++++|+|+++++..
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~---~~~~~i~~~~~~~~~~~~~~~-------~~~~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVAD---RGNNRVVKLAAGSKTQTVLPF-------TGLNDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEE---GGGTEEEEECTTCCSCEECCC-------CSCCSCCCEEECTTCCEEEEEGG
T ss_pred eeeecCCcCCCcceEECCCCCEEEEE---CCCCEEEEEECCCceeEeecc-------ccCCCceeEEEeCCCCEEEEECC
Confidence 322 234789999999977776 556889999866544322111 0111233499999999887653
Q ss_pred ----EEEEcCCCcceeeeccC-CCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC-Cc-eeEEEccCCCEEE
Q 000177 1664 ----ILWDRRNSVPVHRFDQF-TDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL-DQ-TTITFNARGDVIY 1731 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~kf~gh-~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH-~~-~sVaFSPdG~~La 1731 (1922)
.+||...+......... ....+++++++|..+++.. .+||..+.........+ .. ..++++|+|++++
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 78887765543322222 2333899999997777663 37787654433222122 22 7999999998555
Q ss_pred EE
Q 000177 1732 AI 1733 (1922)
Q Consensus 1732 Sg 1733 (1922)
+.
T Consensus 250 ~~ 251 (270)
T 1rwi_B 250 AD 251 (270)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-08 Score=112.06 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=140.5
Q ss_pred CCEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCCceeeec----cCCCCeeEEEeeecCC-CcEEEEecCCcEE
Q 000177 1510 ALLTCITFLGDSSHIAV-------GSHTKELKIFDSNSSSPLESCT----SHQAPVTLVQSHLSGE-TQLLLSSSSQDVH 1577 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLAS-------GS~DGtIkIWDl~tgk~l~tL~----gHss~VtsLq~afSpD-G~lLaSSsDgtVk 1577 (1922)
....+++|+++|.++++ ++.++.|.+||..+++...... ++...+.++ .++++ +++++++....|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i--~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGC--QCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEE--EECSSSSEEEEEETTTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceE--EEecCCCcEEEEECCCCEE
Confidence 45789999999998888 6788999999988877543222 255678888 88999 8888877656788
Q ss_pred EeccCCCCCCcceE-e--------ccceeEEEcCCCCEEEEeecCCCC---------------CeEEEEECCCCceeeee
Q 000177 1578 LWNASSIAGGPMHS-F--------EGCKAARFSNSGNLFAALPTETSD---------------RGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1578 LWDl~t~~gk~l~t-f--------~gh~sVaFSPDG~~LaSgS~~S~D---------------gtIrIWDlrTgk~i~tL 1633 (1922)
+||.. ++.... . ...++++++++|+.+++. ..+ +.|..||.. ++.....
T Consensus 96 ~~d~~---g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 96 VVQTD---GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA---PAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp EEETT---SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE---CBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred EEeCC---CCEEEEEeccCCCccccCCcCEEECCCCCEEEEe---cCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 99876 222111 1 124789999999988776 333 567777765 5443322
Q ss_pred ccccccccCCCCcceEEEEc----CCCCeE-eecc-----EEEEcC-CCc-----ceeeeccCC-Cce-EEEEecCCCEE
Q 000177 1634 SDTSVNLTGRGHAYSQIHFS----PSDTML-LWNG-----ILWDRR-NSV-----PVHRFDQFT-DHG-GGGFHPAGNEV 1695 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFS----PdG~lL-aSgg-----rLWDlr-tgk-----~I~kf~gh~-~~V-sVaFSPdG~~L 1695 (1922)
. .......++|+ |+++.+ ++.. .+||+. +++ ....+..+. ... .++++++|+..
T Consensus 169 ~--------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 169 T--------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp E--------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred c--------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 2 01123448899 999644 4432 678876 443 223333332 333 89999999988
Q ss_pred EEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1696 IINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1696 ASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
++.. .+||..+++.+..+..+.. .+++|+|+|+.|+.+.
T Consensus 241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence 7753 4888887777666664433 7999999999777664
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-08 Score=116.86 Aligned_cols=264 Identities=12% Similarity=0.013 Sum_probs=172.4
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccC-------CCCee
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSH-------QAPVT 1555 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gH-------ss~Vt 1555 (1922)
+...+++.+.++.--. .+ . ++++|||++|++++ .++.|.+||..+++.+.++.-. ...-.
T Consensus 64 iD~~t~~v~~~I~vG~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 64 IDGEAGRVIGMIDGGF-LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EETTTTEEEEEEEECS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG
T ss_pred EECCCCeEEEEEECCC-CC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc
Confidence 3445677777776433 44 4 99999999888776 3678999999999988877421 12345
Q ss_pred EEEeeecCCCcEEEEe--c-CCcEEEeccCCCCCCcceEeccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCC-Ccee
Q 000177 1556 LVQSHLSGETQLLLSS--S-SQDVHLWNASSIAGGPMHSFEGCKAARFSN-SGNLFAALPTETSDRGILLYDIQT-YQLE 1630 (1922)
Q Consensus 1556 sLq~afSpDG~lLaSS--s-DgtVkLWDl~t~~gk~l~tf~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrT-gk~i 1630 (1922)
.+ .|+|||+++..+ . +++|.++|+.+ ++.+.++.--.|..+.| ..+.|++. +.||++.++++.+ ++..
T Consensus 141 ~~--a~spDGk~lyVan~~~~~~VsVID~~t--~~vv~tI~v~g~~~~~P~g~~~~~~~---~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 141 MT--SLTPDGKTLLFYQFSPAPAVGVVDLEG--KAFKRMLDVPDCYHIFPTAPDTFFMH---CRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp GE--EECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEEEEEEEETTEEEEE---ETTSCEEEEECCSSSCCE
T ss_pred eE--EEcCCCCEEEEEEcCCCCeEEEEECCC--CcEEEEEECCCcceeecCCCceeEEE---CCCCCEEEEECCCCCeEE
Confidence 56 789999987764 2 68999999998 77777774322323334 34566665 6688888888876 5543
Q ss_pred eeeccccccccCCCCcceEEEE-cCCCCeE-eecc---EEEEcCCCc--ceeeecc-----------CCCceEEEEecCC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHF-SPSDTML-LWNG---ILWDRRNSV--PVHRFDQ-----------FTDHGGGGFHPAG 1692 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaF-SPdG~lL-aSgg---rLWDlrtgk--~I~kf~g-----------h~~~VsVaFSPdG 1692 (1922)
.+.. ........+......| .++|+++ ++.+ .+.|+.++. .+.++.- ......+.++|++
T Consensus 214 ~~~~--~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 214 ITHT--EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp EEEC--CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred Eeec--ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 3221 0000001111111455 4777654 4444 677876553 3444431 1111257789998
Q ss_pred CEEEEE-------------eE--EEecCCCeEEEEEcC-CCceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCc
Q 000177 1693 NEVIIN-------------SE--VWDLRKFRLLRSVPS-LDQTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLF 1755 (1922)
Q Consensus 1693 ~~LASG-------------Se--IWDLrTgklL~tl~g-H~~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ 1755 (1922)
+.+... .+ +.|+.+++.+++++- +..+.+.|+++|+ .||++.. ..
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~------------------~~ 353 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST------------------GD 353 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET------------------TT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC------------------CC
Confidence 877664 23 668999999999873 3448999999997 7887632 23
Q ss_pred ceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1756 AAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1756 ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
..+.++|..+++.+.+++....-..+.++++
T Consensus 354 ~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 KTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 5678899999999999988766555665554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=4.4e-07 Score=102.70 Aligned_cols=221 Identities=14% Similarity=0.201 Sum_probs=145.6
Q ss_pred cCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEec----------cceeEEE-cCCCCEEEEeecCC-C
Q 000177 1549 SHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFE----------GCKAARF-SNSGNLFAALPTET-S 1615 (1922)
Q Consensus 1549 gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~----------gh~sVaF-SPDG~~LaSgS~~S-~ 1615 (1922)
+|-..+.+| +++++++++++. .++.|.+||.. ++.+..+. ....++| .++++.+++. . .
T Consensus 27 g~~~~p~~v--~~~~~g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~---~~~ 98 (286)
T 1q7f_A 27 GQFTEPSGV--AVNAQNDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE---RSP 98 (286)
T ss_dssp TCBSCEEEE--EECTTCCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE---CGG
T ss_pred CccCCCceE--EECCCCCEEEEECCCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEc---CCC
Confidence 455678888 889999988885 58999999976 34455542 2367889 4677776665 3 2
Q ss_pred CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc--CCCce-EEE
Q 000177 1616 DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ--FTDHG-GGG 1687 (1922)
Q Consensus 1616 DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g--h~~~V-sVa 1687 (1922)
++.|.+|| .+++.+..+.. ........++++|+|++++++. .+||. .++.+..+.. +.... .++
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGA------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECT------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEE
T ss_pred CCEEEEEC-CCCcEEEEecC------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEE
Confidence 68899999 56777666641 1112334599999999888754 77884 4666666642 22334 899
Q ss_pred EecCCCEEEEEe-----EEEecCCCeEEEEEcCCC----ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceE
Q 000177 1688 FHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAF 1758 (1922)
Q Consensus 1688 FSPdG~~LASGS-----eIWDLrTgklL~tl~gH~----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssF 1758 (1922)
++|+|+.+++.+ .+||. +++.+.++..+. ...++++|+|+++++....+ ..+
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~------------------~~i 231 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN------------------FNL 231 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS------------------CEE
T ss_pred ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC------------------EEE
Confidence 999999777765 48897 467777776432 27999999998777763221 123
Q ss_pred EEEecCCCceeeeecc---CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1759 RTVDAINYSDIATIPV---DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1759 rt~Da~dys~IaTidv---kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
..|+. +...+.++.. ...+.+++++|++..++ .. .+..+++|+...
T Consensus 232 ~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~v-s~------~~~~v~v~~~~~ 280 (286)
T 1q7f_A 232 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-AS------KDYRLYIYRYVQ 280 (286)
T ss_dssp EEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EE------TTTEEEEEECSC
T ss_pred EEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEE-EC------CCCeEEEEEccc
Confidence 44442 2223333322 22477899999987443 32 136799998643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-07 Score=108.35 Aligned_cols=252 Identities=11% Similarity=-0.005 Sum_probs=161.0
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccC-------CCCee
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSH-------QAPVT 1555 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gH-------ss~Vt 1555 (1922)
+....++.+.++..-. .+ .++|||||++|+++. .++.|.+||..+.+.+.++.-- ...-.
T Consensus 52 ~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~ 128 (373)
T 2mad_H 52 LDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW 128 (373)
T ss_pred EECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc
Confidence 3344566666666433 33 899999999999886 3678999999988887766321 12234
Q ss_pred EEEeeecCCCcEEEEec---CCcEEEeccCCCCCCcceE-eccceeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCcee
Q 000177 1556 LVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMHS-FEGCKAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1556 sLq~afSpDG~lLaSSs---DgtVkLWDl~t~~gk~l~t-f~gh~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
.+ .|+|||++|+.+. +++|.++| .+ ++.+.+ +.--.++.+.|+++ .+++. +.|+.+.+||. +++.+
T Consensus 129 ~~--~~spDG~~l~v~n~~~~~~v~viD-~t--~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 129 MN--ANTPNNADLLFFQFAAGPAVGLVV-QG--GSSDDQLLSSPTCYHIHPGAPSTFYLL---CAQGGLAKTDH-AGGAA 199 (373)
T ss_pred ce--EECCCCCEEEEEecCCCCeEEEEE-CC--CCEEeEEcCCCceEEEEeCCCceEEEE---cCCCCEEEEEC-CCcEE
Confidence 66 8899999988742 57899999 87 777777 65445566777664 44554 67899999999 88776
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEe--ecc---EEEEcCCCc--ceeeeccCC----------Cce-EEEEecCC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLL--WNG---ILWDRRNSV--PVHRFDQFT----------DHG-GGGFHPAG 1692 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa--Sgg---rLWDlrtgk--~I~kf~gh~----------~~V-sVaFSPdG 1692 (1922)
......... ...........|.+++..++ +.+ .+.|+..+. .+..+.-.. ... .+.|+|++
T Consensus 200 ~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 200 GAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred EEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 433200000 00111111145566554322 222 566665442 223332111 111 37899999
Q ss_pred CEEEEEe-------------E--EEecCCCeEEEEEcCCC-ceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCc
Q 000177 1693 NEVIINS-------------E--VWDLRKFRLLRSVPSLD-QTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLF 1755 (1922)
Q Consensus 1693 ~~LASGS-------------e--IWDLrTgklL~tl~gH~-~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ 1755 (1922)
+.+.+.. + ++|+.+++.+.+++... .+.+.|+|+|+ .++++.. ..
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~------------------~~ 340 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA------------------GT 340 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC------------------CC
Confidence 8776631 3 56999999999997443 48999999999 6777621 12
Q ss_pred ceEEEEecCCCceeee-eccC
Q 000177 1756 AAFRTVDAINYSDIAT-IPVD 1775 (1922)
Q Consensus 1756 ssFrt~Da~dys~IaT-idvk 1775 (1922)
..+.++|..+++.+.+ +.+.
T Consensus 341 ~~V~ViD~~t~~vv~~i~~vG 361 (373)
T 2mad_H 341 EVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred CeEEEEECCCCCEEeeecCCC
Confidence 4578889888888877 4443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=130.66 Aligned_cols=212 Identities=12% Similarity=0.032 Sum_probs=132.5
Q ss_pred CCCCCCEEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCCce-eeeccCCCCe--eEEEeeecCCCcEEEEe-cCCc-
Q 000177 1506 DDAGALLTCITFLGDSSHIA-----VGSHTKELKIFDSNSSSPL-ESCTSHQAPV--TLVQSHLSGETQLLLSS-SSQD- 1575 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLA-----SGS~DGtIkIWDl~tgk~l-~tL~gHss~V--tsLq~afSpDG~lLaSS-sDgt- 1575 (1922)
+|. ..+..++|||||++|+ .|+.+.+|++||+.+++.+ .. +...+ ..+ +|+|||+.|+.+ .|..
T Consensus 118 ~~~-~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---~~~~~~~~~~--~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 118 DGT-VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---VIEGGKYATP--KWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp SSC-EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC---CBSCCTTCCC--EECTTSSEEEEEECCCCT
T ss_pred CCC-EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc---ccCcccccce--EEecCCCEEEEEEecCCC
Confidence 465 6799999999999998 4555678999999999865 22 21222 566 899999988874 4554
Q ss_pred ------------EEEeccCCCCCCcceEec--c----ceeEEEcCCCCEEEEeecCC-CCCeEEEEECCCCceeeeeccc
Q 000177 1576 ------------VHLWNASSIAGGPMHSFE--G----CKAARFSNSGNLFAALPTET-SDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1576 ------------VkLWDl~t~~gk~l~tf~--g----h~sVaFSPDG~~LaSgS~~S-~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
|++|++.+........+. . ...+.|+|||++|+.++..+ ....|++||..++.......
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-- 269 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-- 269 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE--
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec--
Confidence 999999872111122232 2 36789999999988873322 22367777766554333222
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcc--eeeeccC--CCce-EEEEecCCCEEEEEe----
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVP--VHRFDQF--TDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~--I~kf~gh--~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
.........| ++|.+++... .+||+.++.. ...+..+ ...+ .+.|+ ++..+++..
T Consensus 270 ------~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 270 ------GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp ------CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred ------CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 1111222344 5666444321 7888877653 2333333 2334 67887 666666665
Q ss_pred -EEEecC-CCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1700 -EVWDLR-KFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 -eIWDLr-TgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
+||.+. +++.++.+..+.. ..+.|+|+++.++..
T Consensus 342 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 380 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYV 380 (695)
T ss_dssp EEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEE
T ss_pred EEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEE
Confidence 466554 4666677765422 577889999877744
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.92 E-value=5e-07 Score=103.19 Aligned_cols=220 Identities=7% Similarity=0.040 Sum_probs=142.3
Q ss_pred CCceeeeccCCCCeeEEEeeecCCCc-EEEEe-cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCC
Q 000177 1541 SSPLESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1541 gk~l~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S 1614 (1922)
+..+..+..+.....++ .|+|+++ +++++ .++.|..||..+ + ...+.. ..+++|+|+|+++++. .
T Consensus 17 ~~~~~~l~~~~~~~eg~--~~d~~g~~l~~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~l~~~~dg~l~v~~---~ 87 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGP--VYVPARSAVIFSDVRQNRTWAWSDDG--Q--LSPEMHPSHHQNGHCLNKQGHLIACS---H 87 (296)
T ss_dssp TCCCEEEECCCSSEEEE--EEEGGGTEEEEEEGGGTEEEEEETTS--C--EEEEESSCSSEEEEEECTTCCEEEEE---T
T ss_pred CCcEEEEecCCccccCC--eEeCCCCEEEEEeCCCCEEEEEECCC--C--eEEEECCCCCcceeeECCCCcEEEEe---c
Confidence 34445555566677888 8899998 66665 588999999986 3 444432 3789999999988876 5
Q ss_pred CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec--------------------cEEEEcCCCcce
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN--------------------GILWDRRNSVPV 1674 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg--------------------grLWDlrtgk~I 1674 (1922)
.++.|.+||..+++......... .......+.++++|+|+++++. +.||.+.....+
T Consensus 88 ~~~~i~~~d~~~g~~~~~~~~~~---~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 164 (296)
T 3e5z_A 88 GLRRLERQREPGGEWESIADSFE---GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL 164 (296)
T ss_dssp TTTEEEEECSTTCCEEEEECEET---TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE
T ss_pred CCCeEEEEcCCCCcEEEEeeccC---CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCE
Confidence 67889999998887644332000 0001123349999999999862 277777653344
Q ss_pred eeeccCCCce-EEEEecCCCEEEEEe-----EEEecC-CCeE---EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhh
Q 000177 1675 HRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLR-KFRL---LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1675 ~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLr-Tgkl---L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
..+..+.... .++|+|+|+.+++.+ .+|++. ++++ ...+..+.. ..++|+++|+++++. .+
T Consensus 165 ~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~----- 237 (296)
T 3e5z_A 165 SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD----- 237 (296)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT-----
T ss_pred EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC-----
Confidence 4444444444 899999999886655 378886 5554 334421222 689999999866665 11
Q ss_pred hhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEE-cCCCceEEEEe
Q 000177 1743 SAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFAT-ERTDSFVGLIT 1794 (1922)
Q Consensus 1743 s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~-SPdds~LAVVe 1794 (1922)
.+..|+.. ...+..+.....+..+++ +|++..|.+..
T Consensus 238 --------------~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 238 --------------GVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp --------------EEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEE
T ss_pred --------------eEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEc
Confidence 23344432 334444444333788888 58888888764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-07 Score=114.43 Aligned_cols=271 Identities=10% Similarity=0.054 Sum_probs=172.5
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEE
Q 000177 1515 ITFLGDSSHIAVGSH-----TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHL 1578 (1922)
Q Consensus 1515 LaFSPDG~lLASGS~-----DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkL 1578 (1922)
....|+++++++... ++.|.++|..+++.+.++..-..+ .+ .++|||+++..+. ++.|.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~v--a~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NP--VVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EE--EECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cE--EECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 445789998888776 689999999999999888644445 37 8899999776532 568999
Q ss_pred eccCCCCCCcceEec-----------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1579 WNASSIAGGPMHSFE-----------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~-----------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
||..+ .+.+.++. ..+.+.|+|||++++.+.. ..++.|.++|+.+++.+.++.-+...........
T Consensus 114 iD~~t--~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~ 190 (386)
T 3sjl_D 114 FDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 190 (386)
T ss_dssp ECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred EECCC--CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc-CCCCeEEEEECCCCcEEEEEECCCcceeecCCCc
Confidence 99998 77766653 1367999999999887621 2368999999999999998862110000000011
Q ss_pred eEEEEcCCCCeEeeccEEEEcCC-Cccee----eeccCCCce--EEEEe-cCCCEEEEEe--E--EEecCCCe--EEEEE
Q 000177 1648 SQIHFSPSDTMLLWNGILWDRRN-SVPVH----RFDQFTDHG--GGGFH-PAGNEVIINS--E--VWDLRKFR--LLRSV 1713 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSggrLWDlrt-gk~I~----kf~gh~~~V--sVaFS-PdG~~LASGS--e--IWDLrTgk--lL~tl 1713 (1922)
..+++++||++++. ++.+ ++.+. .|......+ ...|. ++|+++.... + +.|+.+.. .+..+
T Consensus 191 ~~~~~~~DG~~~~v-----~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 191 TFFMHCRDGSLAKV-----AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EEEEEETTSCEEEE-----ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred eeEEECCCCCEEEE-----ECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence 12466777776653 3322 22211 111111222 34664 6776444332 2 66775543 33333
Q ss_pred c---------C---CCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEE
Q 000177 1714 P---------S---LDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDF 1781 (1922)
Q Consensus 1714 ~---------g---H~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dL 1781 (1922)
. + .....++++|++..+|...+...+.. ...-.+.+.++|..+++.+.++.+...++.+
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~---------hk~~~~~V~viD~~t~kv~~~i~vg~~~~~l 336 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR---------HKTASRFVVVLDAKTGERLAKFEMGHEIDSI 336 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC---------TTSCEEEEEEEETTTCCEEEEEEEEEEECEE
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccc---------cCCCCCEEEEEECCCCeEEEEEECCCCcceE
Confidence 2 0 11136888999999999854321110 0112356889999999999999999999999
Q ss_pred EEcCCCc-eEEEEecCCCCCccceEEEEEec
Q 000177 1782 ATERTDS-FVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1782 a~SPdds-~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+++++++ .+.+... ....+.+++..
T Consensus 337 avs~D~~~~ly~tn~-----~~~~VsViD~~ 362 (386)
T 3sjl_D 337 NVSQDEKPLLYALST-----GDKTLYIHDAE 362 (386)
T ss_dssp EECSSSSCEEEEEET-----TTTEEEEEETT
T ss_pred EECCCCCeEEEEEcC-----CCCeEEEEECC
Confidence 9999997 4544431 12456667653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-07 Score=120.72 Aligned_cols=259 Identities=9% Similarity=-0.028 Sum_probs=147.0
Q ss_pred CCCCEEEEEeCCC---cEEEE--ECCCCCceeee------ccCCCCeeEEEeeecCCCcEEEEe-----c-CCcEEEecc
Q 000177 1519 GDSSHIAVGSHTK---ELKIF--DSNSSSPLESC------TSHQAPVTLVQSHLSGETQLLLSS-----S-SQDVHLWNA 1581 (1922)
Q Consensus 1519 PDG~lLASGS~DG---tIkIW--Dl~tgk~l~tL------~gHss~VtsLq~afSpDG~lLaSS-----s-DgtVkLWDl 1581 (1922)
|+|++++....++ .-.|| +...++....+ .+|...+..+ .|||||++|+.+ + +.+|++||+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~--~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTW--AVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEE--EECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEE--EECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 6777777666544 23444 44444433322 2466567777 899999999842 2 468999999
Q ss_pred CCCCCCcc-e-Eeccc--eeEEEcCCCCEEEEeecCCC----------CCeEEEEECCCCcee--eeeccccccccCCCC
Q 000177 1582 SSIAGGPM-H-SFEGC--KAARFSNSGNLFAALPTETS----------DRGILLYDIQTYQLE--AKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1582 ~t~~gk~l-~-tf~gh--~sVaFSPDG~~LaSgS~~S~----------DgtIrIWDlrTgk~i--~tL~d~s~~~~~~gh 1645 (1922)
.+ ++.+ . .+..+ ..++|+|||+.|+.++.+.. ...|++|++.+++.. ..+. ..++
T Consensus 155 ~t--g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-------~~~~ 225 (695)
T 2bkl_A 155 DS--GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-------RTGD 225 (695)
T ss_dssp TT--CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-------CCCC
T ss_pred CC--CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-------cCCC
Confidence 87 5543 1 33333 67999999999998833211 223999999987632 2222 1123
Q ss_pred --cceEEEEcCCCCeEeecc---------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe--------EEEecC
Q 000177 1646 --AYSQIHFSPSDTMLLWNG---------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS--------EVWDLR 1705 (1922)
Q Consensus 1646 --~~~vVaFSPdG~lLaSgg---------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS--------eIWDLr 1705 (1922)
....+.|+|+|++|+..+ .+||..+++ ...+..+.... ...| |+|.++++.. .+||+.
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~ 303 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPA 303 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTT
T ss_pred CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCC
Confidence 233489999999887432 445544443 44455544444 6666 5666444332 278887
Q ss_pred CCeE---EEEEcCCCc---eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc--CCc
Q 000177 1706 KFRL---LRSVPSLDQ---TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRC 1777 (1922)
Q Consensus 1706 Tgkl---L~tl~gH~~---~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~ 1777 (1922)
++.. ...+..+.. ..++|+ ++.++++...+... .+..++.. ...+..+.. ...
T Consensus 304 ~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~-----------------~l~~~~~~-g~~~~~l~~~~~~~ 364 (695)
T 2bkl_A 304 KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS-----------------EVRVATLK-GKPVRTVQLPGVGA 364 (695)
T ss_dssp BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE-----------------EEEEEETT-CCEEEECCCSSSSE
T ss_pred CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE-----------------EEEEEeCC-CCeeEEecCCCCeE
Confidence 7653 333443322 567787 55555555322211 12223321 122223332 334
Q ss_pred eEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+..++++|++..+++..... .....+.+|++.
T Consensus 365 v~~~~~s~d~~~l~~~~ss~--~~P~~v~~~d~~ 396 (695)
T 2bkl_A 365 ASNLMGLEDLDDAYYVFTSF--TTPRQIYKTSVS 396 (695)
T ss_dssp ECCCBSCTTCSEEEEEEEET--TEEEEEEEEETT
T ss_pred EEEeecCCCCCEEEEEEcCC--CCCCEEEEEECC
Confidence 67778888887777654222 223567777653
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-06 Score=104.19 Aligned_cols=262 Identities=11% Similarity=0.016 Sum_probs=161.2
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEEec
Q 000177 1517 FLGDSSHIAVGSH--TK---ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHLWN 1580 (1922)
Q Consensus 1517 FSPDG~lLASGS~--DG---tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkLWD 1580 (1922)
..|+++++++... .. +|.+||..+++.+.++.....+ .+ .++|||++|..+. ++.|.+||
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i--~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NP--VAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--Ce--EECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 3456666666543 22 8899999999988888643344 77 8899999888753 56799999
Q ss_pred cCCCCCCcceEecc-----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee-eccccccccCCCCcce
Q 000177 1581 ASSIAGGPMHSFEG-----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK-LSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g-----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t-L~d~s~~~~~~gh~~~ 1648 (1922)
..+ .+.+.++.- -..+.|+|||++++++.. ..++.|.++| .+++.+.+ +..+ .
T Consensus 104 ~~t--~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~-~~~~~v~viD-~t~~~~~~~i~~~----------~- 168 (373)
T 2mad_H 104 PVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF-AAGPAVGLVV-QGGSSDDQLLSSP----------T- 168 (373)
T ss_pred CCC--CcEEEEEECCCccccccCCCccceEECCCCCEEEEEec-CCCCeEEEEE-CCCCEEeEEcCCC----------c-
Confidence 987 555554421 257899999999998722 1257899999 99998877 6411 1
Q ss_pred EEEEcCCCCe-Ee-ecc----EEEEcCCCcceeeec-----cCCCce--EEEEecCCCEEEEEe---E--EEecCCC--e
Q 000177 1649 QIHFSPSDTM-LL-WNG----ILWDRRNSVPVHRFD-----QFTDHG--GGGFHPAGNEVIINS---E--VWDLRKF--R 1708 (1922)
Q Consensus 1649 vVaFSPdG~l-La-Sgg----rLWDlrtgk~I~kf~-----gh~~~V--sVaFSPdG~~LASGS---e--IWDLrTg--k 1708 (1922)
++.+.|++.. ++ .+. .+||. +++.+.... .....+ ...|.+++..++..+ . ++|+.+. +
T Consensus 169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce
Confidence 1333344421 11 111 57777 776553221 111222 445666654332222 2 5566543 2
Q ss_pred EEEEEcCC------------CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC
Q 000177 1709 LLRSVPSL------------DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR 1776 (1922)
Q Consensus 1709 lL~tl~gH------------~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr 1776 (1922)
.+..+.-. ....+.|+|+|+.+|.+........ .......+.++|..+++.+.++....
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~---------~~~~~~~V~VID~~t~~vv~~i~~g~ 318 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK---------LHAAAKEVTSVTGLVGQTSSQISLGH 318 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc---------ccCCCCeEEEEECCCCEEEEEEECCC
Confidence 33333210 0134788999998888743210000 00123568899999999999999888
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+.++|+|+++++..+... .+..+.+|++.
T Consensus 319 ~p~~i~~s~Dg~~~l~v~~~----~~~~V~ViD~~ 349 (373)
T 2mad_H 319 DVDAISVAQDGGPDLYALSA----GTEVLHIYDAG 349 (373)
T ss_pred CcCeEEECCCCCeEEEEEcC----CCCeEEEEECC
Confidence 89999999999944444321 12556777653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.2e-06 Score=92.57 Aligned_cols=210 Identities=8% Similarity=0.008 Sum_probs=141.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee-eccCCCCeeEEEeeecCCCcEEEEec-CCcEEEecc
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES-CTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNA 1581 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t-L~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl 1581 (1922)
+..+. ..+++++++++|+++++...++.|.+||.. ++.... +..+...+.++ .++++|.++++.. ++.|..||.
T Consensus 10 ~~~~~-~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 10 LTNQD-TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCL--TISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp CCSSS-CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEE--EECTTSCEEEEETTTTEEEEECT
T ss_pred CCCcC-CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeE--EECCCCCEEEeCCCCCeEEEECC
Confidence 34455 679999999999988777778999999987 554322 23355778899 8889999888865 788999997
Q ss_pred CCCCCCcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1582 SSIAGGPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1582 ~t~~gk~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
.. + ...+. ....+++.++|+.+++. ..++.|.+||. +++...... .........++++++
T Consensus 86 ~g---~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~---~~~~~i~~~d~-~g~~~~~~~------~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 86 KG---I-IKEYTLPNPDSAPYGITEGPNGDIWFTE---MNGNRIGRITD-DGKIREYEL------PNKGSYPSFITLGSD 151 (299)
T ss_dssp TS---C-EEEEECSSTTCCEEEEEECTTSCEEEEE---TTTTEEEEECT-TCCEEEEEC------SSTTCCEEEEEECTT
T ss_pred CC---c-EEEEeCCCcCCCceeeEECCCCCEEEEe---cCCceEEEECC-CCCEEEecC------CCCCCCCceEEEcCC
Confidence 52 2 22221 24789999999888876 56788999998 555432211 011233445899999
Q ss_pred CCeEeecc-----EEEEcCCCcceee-eccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE-EcCCC--cee
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHR-FDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS-VPSLD--QTT 1720 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~k-f~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t-l~gH~--~~s 1720 (1922)
|.++++.. ..||. +++.... +....... +++++++|...++.. .+||. +++.... ++.+. ...
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHA 229 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCcee
Confidence 98888653 67777 5554332 22222333 899999999776653 36787 6664332 22121 278
Q ss_pred EEEccCCCEEEEE
Q 000177 1721 ITFNARGDVIYAI 1733 (1922)
Q Consensus 1721 VaFSPdG~~LaSg 1733 (1922)
++++++|.+.++.
T Consensus 230 i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 230 ITAGAGIDLWFTE 242 (299)
T ss_dssp EEECSTTCEEEEE
T ss_pred EEECCCCCEEEec
Confidence 9999999866554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-07 Score=103.86 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=148.7
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEEeeecCCCcEEEE-ec-
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQSHLSGETQLLLS-SS- 1572 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq~afSpDG~lLaS-Ss- 1572 (1922)
.+.+.+..+..|....+.++.++|+|++|+ +.++.|+.||. +|+.+..+..+ ...+.++ .+.++|+++++ +.
T Consensus 23 ~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~--~~~~dG~~lv~~~~~ 97 (276)
T 3no2_A 23 DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA--RILPDGNALVAWCGH 97 (276)
T ss_dssp TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE--EECTTSCEEEEEEST
T ss_pred CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc--EECCCCCEEEEecCC
Confidence 356666666665413688999999999888 45788999999 89999888765 3567888 78999999998 44
Q ss_pred CCcEEEeccCCCCCCcceEecc----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
++.|..+|. + ++.+.++.. .+.+.+.++|+++++. ..++.|.+||.. |+.+.++..
T Consensus 98 ~~~v~~vd~-~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~---~~~~~v~~~d~~-G~~~w~~~~------- 163 (276)
T 3no2_A 98 PSTILEVNM-K--GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL---FATSEVREIAPN-GQLLNSVKL------- 163 (276)
T ss_dssp TEEEEEECT-T--SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE---TTTTEEEEECTT-SCEEEEEEC-------
T ss_pred CCEEEEEeC-C--CCEEEEEeccCCCCcccccccCceECCCCCEEEEe---cCCCEEEEECCC-CCEEEEEEC-------
Confidence 566777775 3 666666531 2457788999999988 788999999998 999888861
Q ss_pred CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC------Cce-EEEEecCCCEEEEEeEEEecCCCeEE
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT------DHG-GGGFHPAGNEVIINSEVWDLRKFRLL 1710 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~------~~V-sVaFSPdG~~LASGSeIWDLrTgklL 1710 (1922)
......+.+.++|++++++. ..||..+|+.+.++.... ..+ ++...++|+.+++.. + ++..
T Consensus 164 -~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~---~---g~~~ 236 (276)
T 3no2_A 164 -SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW---Q---GHDR 236 (276)
T ss_dssp -SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE---C---TTCT
T ss_pred -CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec---c---Cccc
Confidence 11223377789999888665 788988899998886431 113 778889998877652 0 1000
Q ss_pred EEEcCCCceeEEEccCCCEEEEE
Q 000177 1711 RSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1711 ~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
..........+.++++|+++-..
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEEE
T ss_pred cccccCCceEEEECCCCCEEEEe
Confidence 00000112466677777776554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-06 Score=100.59 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=136.8
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~ 1588 (1922)
..--+..|+++ +.++++...++.|..||..+++. ..+. +...+.++ .++++|+++++. +..|.+||..+ ++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i--~~~~dG~l~v~~-~~~l~~~d~~~--g~~ 85 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSV--ALRQSGGYVATI-GTKFCALNWKE--QSA 85 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEE--EEBTTSSEEEEE-TTEEEEEETTT--TEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEE--EECCCCCEEEEE-CCeEEEEECCC--CcE
Confidence 45668899995 55677777889999999987765 3332 35678999 889999977665 66899999876 332
Q ss_pred c--eEe------ccceeEEEcCCCCEEEEeecCCC------CCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEc
Q 000177 1589 M--HSF------EGCKAARFSNSGNLFAALPTETS------DRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1589 l--~tf------~gh~sVaFSPDG~~LaSgS~~S~------DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
. ... ...+.++++|+|+++++...... .....||.+.. ++...... .....+.++|+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--------~~~~pngi~~s 157 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD--------QVDISNGLDWS 157 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE--------EESBEEEEEEC
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee--------ccccccceEEc
Confidence 2 111 11367999999997776421110 12234554442 33322221 01223449999
Q ss_pred CCCCeEe-ecc-----EEEEc--CCCcc-----eeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1654 PSDTMLL-WNG-----ILWDR--RNSVP-----VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1654 PdG~lLa-Sgg-----rLWDl--rtgk~-----I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
|+++.++ +.. .+||+ .++.. +..+....... .+++.++|++.++.. .+||..+++++..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 9998664 333 56665 45543 22222222333 889999998776654 378888899999888
Q ss_pred CCCc--eeEEEc-cCCCEEEEEEc
Q 000177 1715 SLDQ--TTITFN-ARGDVIYAILR 1735 (1922)
Q Consensus 1715 gH~~--~sVaFS-PdG~~LaSgs~ 1735 (1922)
.+.. ++++|. |+++.|+.+..
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCceEEEEeCCCCCEEEEEcC
Confidence 6533 899998 89998887754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=123.44 Aligned_cols=211 Identities=12% Similarity=0.032 Sum_probs=130.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCC---------
Q 000177 1510 ALLTCITFLGDSSHIAVGSHT-----KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQ--------- 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~D-----GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDg--------- 1574 (1922)
..+..++|||||++|+.++.+ .+|++||+.+++.+.... +...+..+ +|+|| +.|+. +.+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~--~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGL--AWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCC--EESTT-SEEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccE--EEECC-CEEEEEEecCccccccccc
Confidence 468899999999999887755 469999999998754311 11122455 88999 77766 4343
Q ss_pred -----cEEEeccCCCCCCcceEec--c----ceeEEEcCCCCEEEEeecCC--CCCeEEEEECCCC--ceeeeecccccc
Q 000177 1575 -----DVHLWNASSIAGGPMHSFE--G----CKAARFSNSGNLFAALPTET--SDRGILLYDIQTY--QLEAKLSDTSVN 1639 (1922)
Q Consensus 1575 -----tVkLWDl~t~~gk~l~tf~--g----h~sVaFSPDG~~LaSgS~~S--~DgtIrIWDlrTg--k~i~tL~d~s~~ 1639 (1922)
.|++|++.+........+. . ...+.|+|||++|+..+... ....|++||+.++ ++...+..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---- 314 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP---- 314 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC----
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC----
Confidence 3889998762111122232 2 35789999999988874333 3458999999887 31344431
Q ss_pred ccCCCCcceEEEEcCCCCeEeecc---------EEEEcCCC--cceeeeccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1640 LTGRGHAYSQIHFSPSDTMLLWNG---------ILWDRRNS--VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG~lLaSgg---------rLWDlrtg--k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
........++|+|+.|+..+ .+||+.++ +....+..+...+ .+.|+ ++..+++.. +||
T Consensus 315 ----~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 315 ----DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp ----SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ----CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 11111222458888776332 67888774 2333333444444 66776 455556554 466
Q ss_pred ecC-CCeEEEEEcCC-Cc--eeEEEccCCCEEEEE
Q 000177 1703 DLR-KFRLLRSVPSL-DQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1703 DLr-TgklL~tl~gH-~~--~sVaFSPdG~~LaSg 1733 (1922)
.+. +++.++.+..+ .. ..+.|+|+++.|+..
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 544 46666777643 22 578899998866643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-06 Score=114.84 Aligned_cols=260 Identities=9% Similarity=0.035 Sum_probs=149.9
Q ss_pred CCCCEEEEEeCCCc---EEEEEC--C---CCCceee-----e-ccCCCCeeEEEeeecCCCcEEEEec--C----CcEEE
Q 000177 1519 GDSSHIAVGSHTKE---LKIFDS--N---SSSPLES-----C-TSHQAPVTLVQSHLSGETQLLLSSS--S----QDVHL 1578 (1922)
Q Consensus 1519 PDG~lLASGS~DGt---IkIWDl--~---tgk~l~t-----L-~gHss~VtsLq~afSpDG~lLaSSs--D----gtVkL 1578 (1922)
|+|++++....++. -.||-. . .++.... + .+|...+..+ .|||||++|+.+. . .+|++
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~--~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAW--AASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEE--EECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeE--EECCCCCEEEEEEcCCCCceEEEEE
Confidence 77887776665543 455544 3 3333222 1 2344456677 8999999998743 2 36999
Q ss_pred eccCCCCCCcceE-eccc--eeEEEcCCCCEEEEeecCCC-----------CCeEEEEECCCCcee--eeeccccccccC
Q 000177 1579 WNASSIAGGPMHS-FEGC--KAARFSNSGNLFAALPTETS-----------DRGILLYDIQTYQLE--AKLSDTSVNLTG 1642 (1922)
Q Consensus 1579 WDl~t~~gk~l~t-f~gh--~sVaFSPDG~~LaSgS~~S~-----------DgtIrIWDlrTgk~i--~tL~d~s~~~~~ 1642 (1922)
||+.+ ++.+.. +.+. ..++|+|| +.|+.++.+.. ...|++|++.+++.. ..+. .
T Consensus 194 ~dl~t--g~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-------~ 263 (741)
T 1yr2_A 194 VGVAD--GKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA-------T 263 (741)
T ss_dssp EETTT--CCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-------C
T ss_pred EECCC--CCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-------c
Confidence 99987 555432 2222 57899999 98888743322 335999999877632 2222 1
Q ss_pred CCCc--ceEEEEcCCCCeEeecc----------EEEEcCCC--cceeeeccCCCceEEEEecCCCEEEEEe---------
Q 000177 1643 RGHA--YSQIHFSPSDTMLLWNG----------ILWDRRNS--VPVHRFDQFTDHGGGGFHPAGNEVIINS--------- 1699 (1922)
Q Consensus 1643 ~gh~--~~vVaFSPdG~lLaSgg----------rLWDlrtg--k~I~kf~gh~~~VsVaFSPdG~~LASGS--------- 1699 (1922)
..+. ...+.|+|||++|+..+ .+||+.++ ++...+..+.......++|+|..|+..+
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEE
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEE
Confidence 1232 34489999999887322 78898877 4255565555444223458999888776
Q ss_pred EEEecCCC--eEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-
Q 000177 1700 EVWDLRKF--RLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV- 1774 (1922)
Q Consensus 1700 eIWDLrTg--klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv- 1774 (1922)
.+||+.++ +....++.+.. ..+.|+ ++.++++...+.. ..+..++. +...+..+..
T Consensus 344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-----------------~~l~~~~~-~g~~~~~l~~~ 404 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-----------------SQVLAFDL-DGKPAGAVSLP 404 (741)
T ss_dssp EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-----------------EEEEEEET-TSCEEEECBCS
T ss_pred EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-----------------EEEEEEeC-CCCceeeccCC
Confidence 26788774 34444444443 456666 3444444432221 12233332 1222333332
Q ss_pred -CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1775 -DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1775 -kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
...+..++++|++..+++.-.. ......+.+|++.
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss--~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSS--FTQPATVLALDPA 440 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEE--TTEEEEEEEEETT
T ss_pred CCeEEEEeecCCCCCEEEEEEcC--CCCCCEEEEEECC
Confidence 3457889999988877765322 2233567777753
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-06 Score=107.46 Aligned_cols=250 Identities=12% Similarity=0.080 Sum_probs=160.7
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccC-------CCCee
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSH-------QAPVT 1555 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gH-------ss~Vt 1555 (1922)
+...+++.+.++.--. .+ .++|+|||++|+++. .++.|.++|..+++.+.++.-- ...-.
T Consensus 104 ID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~ 180 (426)
T 3c75_H 104 IDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW 180 (426)
T ss_dssp EETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG
T ss_pred EECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc
Confidence 3345677777776433 34 899999999888876 4779999999999988877421 12334
Q ss_pred EEEeeecCCCcEEEEec---CCcEEEeccCCCCCCcceEeccceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1556 LVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMHSFEGCKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1556 sLq~afSpDG~lLaSSs---DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
.+ .|+|||++|+.+. +++|.+.|+.+ .+.+.++.--.+....|++ +.+++. +.|+++.+.|..+++...
T Consensus 181 ~~--~~spDGk~lyV~n~~~~~~VsVID~~t--~kvv~~I~v~g~~~~~p~g~~~~v~~---~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 181 MN--ALTPDNKNLLFYQFSPAPAVGVVDLEG--KTFDRMLDVPDCYHIFPASPTVFYMN---CRDGSLARVDFADGETKV 253 (426)
T ss_dssp GS--EECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEEEEEEEETTEEEEE---ETTSSEEEEECCTTCCEE
T ss_pred eE--EEcCCCCEEEEEecCCCCeEEEEECCC--CeEEEEEEcCCceeeccCCCcEEEEE---cCCCCEEEEECCCCcEEE
Confidence 56 7899999888752 57899999998 6666666532233444543 444544 557777777876555443
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcc--eeeeccC-----------CCceEEEEecCCC
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVP--VHRFDQF-----------TDHGGGGFHPAGN 1693 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~--I~kf~gh-----------~~~VsVaFSPdG~ 1693 (1922)
+.. .... .........+.|++++..++... .+.|...+.. +..+... .....+.|+|+|+
T Consensus 254 ~~~-~~~~-v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 254 TNT-EVFH-TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEC-CCCS-CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred Eee-eeec-cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 211 0000 00111111256788876544322 5666654331 1222110 0111378999988
Q ss_pred EEEEE------------e---EEEecCCCeEEEEEcCCC-ceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcc
Q 000177 1694 EVIIN------------S---EVWDLRKFRLLRSVPSLD-QTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFA 1756 (1922)
Q Consensus 1694 ~LASG------------S---eIWDLrTgklL~tl~gH~-~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~s 1756 (1922)
.+.+. + .++|+.+++.+.+++... .+.+.|+|+|+ .+|++.. ...
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~------------------~s~ 393 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSA------------------GTQ 393 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET------------------TTT
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcC------------------CCC
Confidence 65553 2 278999999999998443 48999999999 8888742 235
Q ss_pred eEEEEecCCCceeeee
Q 000177 1757 AFRTVDAINYSDIATI 1772 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTi 1772 (1922)
.+.++|..+++.+.++
T Consensus 394 ~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 394 TLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCCEEEEe
Confidence 6889999999999887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-06 Score=102.92 Aligned_cols=210 Identities=10% Similarity=0.127 Sum_probs=133.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CC--cEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQ--DVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dg--tVkLWDl~t~~g 1586 (1922)
...+.++|+++|+++++...++.|++||..++........... .. + +|++++++|+.+. ++ .|.+|+... +
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-i--a~~~~g~~l~~~d~~~~~~I~~~d~~~--~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-P--AVTKDKQRVYSIGWEGTHTVYVYMKAS--G 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-C--EECTTSSEEEEEBSSTTCEEEEEEGGG--T
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-e--eEecCCCcEEEEecCCCceEEEEEcCC--C
Confidence 4578999999999888888889999999987776555443222 33 6 7899999877754 34 788888765 3
Q ss_pred CcceEe--------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-ceEEEEcCC-C
Q 000177 1587 GPMHSF--------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA-YSQIHFSPS-D 1656 (1922)
Q Consensus 1587 k~l~tf--------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~-~~vVaFSPd-G 1656 (1922)
.....+ ...++++|+|++..|+.+ ..++.|+.||..++.... +....... ..+.. .+.++|+|+ +
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~---d~~~~I~~~d~~~~~~~~-~~~~~~~g-~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFV---DSNKNFGRFNVKTQEVTL-IKQLELSG-SLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEE---CTTCEEEEEETTTCCEEE-EEECCCCS-CCCCSSCCEEEEETTTT
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEE---ECCCcEEEEECCCCCEEE-EecccccC-CCCCCccccEEEeCCCC
Confidence 332333 234789999954445555 457899999998776432 21000000 01111 126999995 6
Q ss_pred CeEeecc-----EEEEcCCCcceeeeccC----------------CCceEEEEecCCCEEEEEe------EEEecCCCeE
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQF----------------TDHGGGGFHPAGNEVIINS------EVWDLRKFRL 1709 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~gh----------------~~~VsVaFSPdG~~LASGS------eIWDLrTgkl 1709 (1922)
.++++.. +.||.. ++ +..+.++ ..+..++|+|+|+++++.+ +.|++.++..
T Consensus 280 ~lyv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEEEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 6666654 455543 32 4444332 2233899999999777765 3678666764
Q ss_pred EEEEcCC----------------C-ceeEEEccCCCEEEEE
Q 000177 1710 LRSVPSL----------------D-QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1710 L~tl~gH----------------~-~~sVaFSPdG~~LaSg 1733 (1922)
.++.++ . .+.++++++|.++++-
T Consensus 358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 445443 1 2689999997655554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-06 Score=106.54 Aligned_cols=265 Identities=9% Similarity=0.051 Sum_probs=165.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEEeccCC
Q 000177 1520 DSSHIAVGSHT-----KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHLWNASS 1583 (1922)
Q Consensus 1520 DG~lLASGS~D-----GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkLWDl~t 1583 (1922)
+++++++.... ++|.++|..+++.+.++..-..+ .+ .++||+++|..+. ++.|.++|..+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gi--a~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HP--VAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EE--EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ce--EECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 55555554432 68999999999999988544455 77 8899999776642 56899999998
Q ss_pred CCCCcceEec-----------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1584 IAGGPMHSFE-----------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1584 ~~gk~l~tf~-----------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.+.+.++. .-..+.|+|||++++.+.. ..++.|.++|+.+++.+.++.-+.............+.+
T Consensus 159 --~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~-~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 159 --FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF-SPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN 235 (426)
T ss_dssp --CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred --CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec-CCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence 67666653 1257899999999988721 236889999999999988886211000000001112566
Q ss_pred cCCCCeEeeccEEEEcCCCcce----eeeccCCCce--EEEEecCCCEEEEEe-----EEEecCCCeE--EEEEcC----
Q 000177 1653 SPSDTMLLWNGILWDRRNSVPV----HRFDQFTDHG--GGGFHPAGNEVIINS-----EVWDLRKFRL--LRSVPS---- 1715 (1922)
Q Consensus 1653 SPdG~lLaSggrLWDlrtgk~I----~kf~gh~~~V--sVaFSPdG~~LASGS-----eIWDLrTgkl--L~tl~g---- 1715 (1922)
+++|++++.. ..+++.. ..|......+ .+.|.+++..++..+ .+.|+.+... +.++.-
T Consensus 236 ~~dG~~~~V~-----~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 236 CRDGSLARVD-----FADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp ETTSSEEEEE-----CCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred cCCCCEEEEE-----CCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence 7777666433 2222222 2232222222 456788877655444 2556644321 111110
Q ss_pred --------CCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCC
Q 000177 1716 --------LDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1716 --------H~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdd 1787 (1922)
.....++|+|+|..+|.+........ .......+.++|..+++.+.++.+....+.++++|++
T Consensus 311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt---------hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg 381 (426)
T 3c75_H 311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK---------HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDA 381 (426)
T ss_dssp TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC---------TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS
T ss_pred ccccccccCCceeeEEcCCCCEEEEEeccccccc---------ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCC
Confidence 01124899999999998742110000 0002357899999999999999998889999999999
Q ss_pred c-eEEEEecCCCCCccceEEEEEe
Q 000177 1788 S-FVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1788 s-~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
+ .+.+.... ...+.++++
T Consensus 382 ~~~lyv~n~~-----s~~VsVID~ 400 (426)
T 3c75_H 382 EPLLYALSAG-----TQTLHIYDA 400 (426)
T ss_dssp SCEEEEEETT-----TTEEEEEET
T ss_pred CEEEEEEcCC-----CCeEEEEEC
Confidence 9 66655422 244555554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-06 Score=98.16 Aligned_cols=207 Identities=13% Similarity=0.038 Sum_probs=133.3
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDS-SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
...+..|+|++ .+++++..++.|.+||..+++.. .+. +...|.++ .|+++|++++++.+ .|.+||..+ ++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i--~~~~dg~l~v~~~~-gl~~~d~~~--g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSAL--AKISDSKQLIASDD-GLFLRDTAT--GVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEE--EEEETTEEEEEETT-EEEEEETTT--CCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEE--EEeCCCeEEEEECC-CEEEEECCC--CcEE
Confidence 35678899974 56677778899999999876543 332 34678999 78999998888754 499999876 4432
Q ss_pred eEe--------ccceeEEEcCCCCEEEEeecC---CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1590 HSF--------EGCKAARFSNSGNLFAALPTE---TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1590 ~tf--------~gh~sVaFSPDG~~LaSgS~~---S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
... ...+.+.|+|+|+++++.... ...+.|..+| +++...... .....+.++|+|+|+.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--------~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--------DISIPNSICFSPDGTT 192 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--------EESSEEEEEECTTSCE
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--------CCcccCCeEEcCCCCE
Confidence 111 123678999999977764211 0124555666 454332221 0112345999999986
Q ss_pred Ee-ecc-----EEEEcC--CC-cc-----eeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC-
Q 000177 1659 LL-WNG-----ILWDRR--NS-VP-----VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD- 1717 (1922)
Q Consensus 1659 La-Sgg-----rLWDlr--tg-k~-----I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~- 1717 (1922)
++ +.. .+||+. ++ +. +..+....... .+++.++|++.++.. .+||. +++.+..+..+.
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 54 332 677875 55 32 22222222333 889999998776652 37787 577777776544
Q ss_pred -ceeEEEc-cCCCEEEEEEc
Q 000177 1718 -QTTITFN-ARGDVIYAILR 1735 (1922)
Q Consensus 1718 -~~sVaFS-PdG~~LaSgs~ 1735 (1922)
.++++|+ |++..|+.+..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEB
T ss_pred CcEEEEEecCCCCEEEEEec
Confidence 3799998 89888877644
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=113.58 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~ 1585 (1922)
.+. + |+.++| |+++|+++ .++.|++||+.+.........|..+|.++ .+.+. .+++...||+|.+||+..
T Consensus 86 ~lp-~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i--~~~~p-~~av~~~dG~L~v~dl~~-- 155 (388)
T 1xip_A 86 EIP-D-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQL--KNVNN-TLVILNSVNDLSALDLRT-- 155 (388)
T ss_dssp ECT-T-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEE--EECSS-EEEEEETTSEEEEEETTT--
T ss_pred eCC-C-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeE--EecCC-CEEEEECCCCEEEEEccC--
Confidence 466 6 999999 99999999 88999999998887777778888899988 44443 255557899999999986
Q ss_pred CCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce--eeeecccccccc--CCCCcceEEEEcCCCCeEee
Q 000177 1586 GGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLT--GRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1586 gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~--~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+.....-.++++++|||+| ++.| ..||++++|+...+.+ ..++..|..... .+.+.+..+.|.+++.++++
T Consensus 156 ~~~~~~~~~Vs~v~WSpkG--~~vg---~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 156 KSTKQLAQNVTSFDVTNSQ--LAVL---LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CCEEEEEESEEEEEECSSE--EEEE---ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CccccccCCceEEEEcCCc--eEEE---EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 5555545568999999999 4556 6789999999988776 666753322221 23455566999999888874
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-06 Score=102.45 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=138.3
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCceeee-------ccCCCCeeEEEeeecCCCcEEEEe-c-----CC
Q 000177 1510 ALLTCITFLGDSSHIAVGS--HTKELKIFDSNSSSPLESC-------TSHQAPVTLVQSHLSGETQLLLSS-S-----SQ 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS--~DGtIkIWDl~tgk~l~tL-------~gHss~VtsLq~afSpDG~lLaSS-s-----Dg 1574 (1922)
..+..++++++|+++++.. .++.++||.+.+++. ..| .+|-..+..| .++++++++++. . +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv--~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGI--KSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEE--EECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEE--EEcCCCcEEEEcCCCCcCCCC
Confidence 4689999999999988864 234366666654543 322 2355678899 889999988774 2 57
Q ss_pred cEEEeccCCCCCCcceEecc----------ceeEEEcCCCCEE-EEeecCCCCCeEEEEECCCCceeeeeccc-cccc--
Q 000177 1575 DVHLWNASSIAGGPMHSFEG----------CKAARFSNSGNLF-AALPTETSDRGILLYDIQTYQLEAKLSDT-SVNL-- 1640 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g----------h~sVaFSPDG~~L-aSgS~~S~DgtIrIWDlrTgk~i~tL~d~-s~~~-- 1640 (1922)
.|.+||+.+ ++.+.++.. .+.+++++++.++ ++......++.|.+||+.+++....+... ....
T Consensus 94 ~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 94 KLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred eEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 899999987 665554431 2779999865444 44310015789999999988776655310 0000
Q ss_pred ---cCCC----------------CcceEEEEcCCCCeEeecc----EEEEcCCC-----c-----ceee--eccCCCce-
Q 000177 1641 ---TGRG----------------HAYSQIHFSPSDTMLLWNG----ILWDRRNS-----V-----PVHR--FDQFTDHG- 1684 (1922)
Q Consensus 1641 ---~~~g----------------h~~~vVaFSPdG~lLaSgg----rLWDlrtg-----k-----~I~k--f~gh~~~V- 1684 (1922)
...+ ...+-++|+|+|+.|+... ++|.+.+. . .... ..++....
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd 251 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD 251 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence 0000 1123499999998776443 78876531 1 0111 11222223
Q ss_pred EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC---CceeEEEccCCCEEEEEE
Q 000177 1685 GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL---DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1685 sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH---~~~sVaFSPdG~~LaSgs 1734 (1922)
.++++++|..+++.. .+||..+++........ ..+.++|.++|.++++..
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 789999999888875 48998557643333211 127999999998777764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-06 Score=114.08 Aligned_cols=212 Identities=14% Similarity=0.130 Sum_probs=132.7
Q ss_pred CCCCCCEEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCCceee-eccCCCCeeEEEeeecCCCcEEEEe-cCC----
Q 000177 1506 DDAGALLTCITFLGDSSHIAV-----GSHTKELKIFDSNSSSPLES-CTSHQAPVTLVQSHLSGETQLLLSS-SSQ---- 1574 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLAS-----GS~DGtIkIWDl~tgk~l~t-L~gHss~VtsLq~afSpDG~lLaSS-sDg---- 1574 (1922)
+|. ..+..++|||||++||. |+...+|+|||+.+++.+.. +.+. ....+ +|+ |++.|+.+ .+.
T Consensus 126 ~~~-~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~--~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 126 DGT-TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGI--SWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp TSC-CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCC--EEE-TTTEEEEEESSCCC--
T ss_pred CCc-EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccE--EEe-CCCEEEEEEecCcccc
Confidence 466 67889999999999884 33346799999999986543 2211 12455 788 98877664 452
Q ss_pred ---------cEEEeccCCCCCC--cceEecc-----ceeEEEcCCCCEEEEeec-CCCCCeEEEEECCCCc-eeeeeccc
Q 000177 1575 ---------DVHLWNASSIAGG--PMHSFEG-----CKAARFSNSGNLFAALPT-ETSDRGILLYDIQTYQ-LEAKLSDT 1636 (1922)
Q Consensus 1575 ---------tVkLWDl~t~~gk--~l~tf~g-----h~sVaFSPDG~~LaSgS~-~S~DgtIrIWDlrTgk-~i~tL~d~ 1636 (1922)
.|++|++.+.... ++..... ...+.|+|||++|+.... ++....|++||+.++. ....+..
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~- 278 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG- 278 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-
Confidence 4999999762221 2333333 256889999998765432 2344689999998764 3334431
Q ss_pred cccccCCCCcceEEEEcCCCCeEe-ecc--------EEEEcCCCcc--eeeeccCCCceEEEEecCCCEEEEEe------
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLL-WNG--------ILWDRRNSVP--VHRFDQFTDHGGGGFHPAGNEVIINS------ 1699 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLa-Sgg--------rLWDlrtgk~--I~kf~gh~~~VsVaFSPdG~~LASGS------ 1699 (1922)
...... ..|+++|..|+ ... ..||+.++.. ...+..+...+- .|+|++++|+...
T Consensus 279 ------~~~~~~-~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 279 ------DLDADV-SLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ------SSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEEEEEEEETTEE
T ss_pred ------CCCceE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEEEEEEEECCee
Confidence 011111 22666666544 221 6778877654 345555554444 9999999988776
Q ss_pred --EEEecCCCeEEEEEcCCC-c--eeEEEccCCCEEEEE
Q 000177 1700 --EVWDLRKFRLLRSVPSLD-Q--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 --eIWDLrTgklL~tl~gH~-~--~sVaFSPdG~~LaSg 1733 (1922)
.+||+.+ ...+.+.-.. . ..+.++|+++.|+..
T Consensus 351 ~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 351 RVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp EEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred EEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 3788874 4455554222 1 466778888776655
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-06 Score=94.60 Aligned_cols=174 Identities=7% Similarity=-0.027 Sum_probs=117.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
..+.+++|+++|+++++.. ++.|.+||...... ..+. .....+..+ .++++|+++++. .++.|.+|+..+ ..
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i--~~~~~g~l~v~~~~~~~i~~~~~~~--~~ 140 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGL--AVDTQGAVYVADRGNNRVVKLAAGS--KT 140 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEE--EECTTCCEEEEEGGGTEEEEECTTC--CS
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcce--EECCCCCEEEEECCCCEEEEEECCC--ce
Confidence 4678999999999666655 88999999876544 3332 333678888 889999988885 478999997654 22
Q ss_pred cceE----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1588 PMHS----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1588 ~l~t----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
.... +...+.++++++|+.+++. ..++.|.+||..+........ ........++++++|.++++..
T Consensus 141 ~~~~~~~~~~~p~~i~~~~~g~l~v~~---~~~~~i~~~~~~~~~~~~~~~-------~~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 141 QTVLPFTGLNDPDGVAVDNSGNVYVTD---TDNNRVVKLEAESNNQVVLPF-------TDITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp CEECCCCSCCSCCCEEECTTCCEEEEE---GGGTEEEEECTTTCCEEECCC-------SSCCSEEEEEECTTCCEEEEET
T ss_pred eEeeccccCCCceeEEEeCCCCEEEEE---CCCCEEEEEecCCCceEeecc-------cCCCCceEEEECCCCCEEEEEC
Confidence 2211 1224789999999977775 556889999988765433221 0112234499999998887653
Q ss_pred -----EEEEcCCCcceeeeccC-CCceEEEEecCCCEEEEEe
Q 000177 1664 -----ILWDRRNSVPVHRFDQF-TDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1664 -----rLWDlrtgk~I~kf~gh-~~~VsVaFSPdG~~LASGS 1699 (1922)
.+||............+ ....+++++|+|+.+++..
T Consensus 211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence 78887654333222122 2334899999998766665
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=104.63 Aligned_cols=227 Identities=10% Similarity=-0.043 Sum_probs=143.3
Q ss_pred cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEEeccCCCCCCcceEecc------
Q 000177 1532 ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHLWNASSIAGGPMHSFEG------ 1594 (1922)
Q Consensus 1532 tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkLWDl~t~~gk~l~tf~g------ 1594 (1922)
+|.++|..+++.+.++..-..+ .+ .++||++++..+. +++|.+||..+ ++.+.++.-
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i--~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T--~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LA--VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--FLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EE--EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--CCEEEEEEETTSCSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ce--EECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CCEEEEEECCCcccc
Confidence 7889999999999998544455 67 8999998887753 67899999998 777777641
Q ss_pred -----ceeEEEcCCCCEEEEeecCCCCCeEEE--EECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-------
Q 000177 1595 -----CKAARFSNSGNLFAALPTETSDRGILL--YDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL------- 1660 (1922)
Q Consensus 1595 -----h~sVaFSPDG~~LaSgS~~S~DgtIrI--WDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa------- 1660 (1922)
-..+.|+|||++++.+.. +....+.+ ||+.+ +.++..+........+....++++++|++++
T Consensus 121 ~~g~~P~~ia~SpDGk~lyVan~-~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 121 SVGPRVHIIGNCASSACLLFFLF-GSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEEC-SSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred ccCCCcceEEEcCCCCEEEEEcc-CCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 368999999999888722 22467888 99977 3333210000000000001122222222211
Q ss_pred -------------------------------ec-c--EEEEcCCC--cceeeeccC------CCce-----EEEEecCCC
Q 000177 1661 -------------------------------WN-G--ILWDRRNS--VPVHRFDQF------TDHG-----GGGFHPAGN 1693 (1922)
Q Consensus 1661 -------------------------------Sg-g--rLWDlrtg--k~I~kf~gh------~~~V-----sVaFSPdG~ 1693 (1922)
+. + .+.|+.++ +.+.++... .... .+.|+|+|+
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred ccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 10 2 33344322 122222111 1111 278999998
Q ss_pred EEEEE-----------e---EEEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceE
Q 000177 1694 EVIIN-----------S---EVWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAF 1758 (1922)
Q Consensus 1694 ~LASG-----------S---eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssF 1758 (1922)
.+..+ + .+||+.+++.+.+++... .+.+.|+|+|+.++.+.+. ....+
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~-----------------~~~~V 339 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA-----------------GTEVL 339 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET-----------------TTTEE
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC-----------------CCCeE
Confidence 76642 1 399999999999887443 3899999999866655320 13568
Q ss_pred EEEecCCCceeeeeccCCceEEEEEcC
Q 000177 1759 RTVDAINYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1759 rt~Da~dys~IaTidvkr~I~dLa~SP 1785 (1922)
.++|..+++.+.++.+...-+.+++.+
T Consensus 340 sVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred EEEECCCCcEEEEEECCCCCCEEEeec
Confidence 899999999999998877766666554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.5e-06 Score=95.12 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=140.5
Q ss_pred EecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1503 TCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
.+..+. .......|+|+|+ +++++..++.|..|+. +++ ...+..+...+..+ .++++|+++++.. ++.|.+|+
T Consensus 39 ~l~~~~-~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl--~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 39 TLYDQA-TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGN--AVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp EEECCC-SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEE--EECTTSCEEEEETTTTEEEEEC
T ss_pred EEecCC-cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCcccee--eECCCCCEEEEECCCCEEEEEC
Confidence 344444 5678899999998 6788888999999998 454 45566667788999 8899999888764 67899999
Q ss_pred cCCCCCCcceEe---------ccceeEEEcCCCCEEEE----eecC----------CCCCeEEEEECCCCceeeeecccc
Q 000177 1581 ASSIAGGPMHSF---------EGCKAARFSNSGNLFAA----LPTE----------TSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1581 l~t~~gk~l~tf---------~gh~sVaFSPDG~~LaS----gS~~----------S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
.. ++. ..+ ...+.++++|+|+++++ |... ...+.|..||..+++......
T Consensus 114 ~~---g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~--- 186 (305)
T 3dr2_A 114 AD---GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD--- 186 (305)
T ss_dssp TT---SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE---
T ss_pred CC---CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec---
Confidence 75 222 222 12367999999998886 3110 013567888887766433211
Q ss_pred ccccCCCCcceEEEEcCCCCeEeec---------c--EEEEcCCCcc--eeeecc-CCCce-EEEEecCCCEEEEEe---
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWN---------G--ILWDRRNSVP--VHRFDQ-FTDHG-GGGFHPAGNEVIINS--- 1699 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSg---------g--rLWDlrtgk~--I~kf~g-h~~~V-sVaFSPdG~~LASGS--- 1699 (1922)
....+.++|+|+++.|+.. . .+||+..+.. ...+.. ..... .+.+.++|++.++..
T Consensus 187 ------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv 260 (305)
T 3dr2_A 187 ------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGV 260 (305)
T ss_dssp ------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEE
T ss_pred ------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcE
Confidence 1123348999999865532 2 5677665431 112211 11222 688999999655543
Q ss_pred EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEE
Q 000177 1700 EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
.+|+. .++.+..+..... .+++|+|+++.|+.+.
T Consensus 261 ~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 261 CVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp EEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred EEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEc
Confidence 37787 4777777764444 7899999999888774
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00011 Score=82.53 Aligned_cols=205 Identities=9% Similarity=0.049 Sum_probs=136.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk 1587 (1922)
..+.++++.++|++.++...++.|.+||.. ++... .+..+...+..+ .+++++.++++.. ++.|..||... +
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~v~~~d~~g---~ 93 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCL--IVSSLGDIWFTENGANKIGKLSKKG---G 93 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE--EECTTSCEEEEETTTTEEEEECTTS---C
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeE--EECCCCCEEEEecCCCeEEEECCCC---C
Confidence 678999999999988887788999999987 55433 223344678888 7889999888865 78899998762 2
Q ss_pred cc-eEe----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1588 PM-HSF----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1588 ~l-~tf----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
.. ..+ .....+++.++|+.+++. ..++.|..||.. ++... +..+ ........++++++|+++++.
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~---~~~~~i~~~~~~-g~~~~-~~~~-----~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQ---LNGDRIGKLTAD-GTIYE-YDLP-----NKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEE---TTTTEEEEECTT-SCEEE-EECS-----STTCCEEEEEECTTSSEEEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEc---cCCCeEEEECCC-CCEEE-ccCC-----CCCCCceeEEECCCCCEEEEe
Confidence 21 122 124788999999988876 557889999987 55442 2100 012333458999999977765
Q ss_pred c-----EEEEcCCCcceeeec--cCCCce-EEEEecCCCEEEEEe---E--EEecCCCeEEEE-EcCCC--ceeEEEccC
Q 000177 1663 G-----ILWDRRNSVPVHRFD--QFTDHG-GGGFHPAGNEVIINS---E--VWDLRKFRLLRS-VPSLD--QTTITFNAR 1726 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~kf~--gh~~~V-sVaFSPdG~~LASGS---e--IWDLrTgklL~t-l~gH~--~~sVaFSPd 1726 (1922)
. ..||. +++.. .+. ...... .++++++|+..++.. . +||. +++.... ++... ...++++++
T Consensus 164 ~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 164 NQNNSIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp TTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred cCCCeEEEECC-CCcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCC
Confidence 3 56666 45433 232 222233 899999998777653 3 5666 4554432 22222 278999999
Q ss_pred CCEEEEE
Q 000177 1727 GDVIYAI 1733 (1922)
Q Consensus 1727 G~~LaSg 1733 (1922)
|++.++.
T Consensus 241 g~l~v~~ 247 (300)
T 2qc5_A 241 SEIWFTE 247 (300)
T ss_dssp TCEEEEE
T ss_pred CCEEEec
Confidence 9865554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.5e-05 Score=86.43 Aligned_cols=204 Identities=6% Similarity=-0.023 Sum_probs=137.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
+. ..+.+++++++|.++++...++.|..||.. ++. ..+ ..+...+..+ .++++++++++. .++.|.+||. +
T Consensus 55 ~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~d~-~ 128 (299)
T 2z2n_A 55 PD-AKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGI--TEGPNGDIWFTEMNGNRIGRITD-D 128 (299)
T ss_dssp TT-CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEE--EECTTSCEEEEETTTTEEEEECT-T
T ss_pred cc-CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceee--EECCCCCEEEEecCCceEEEECC-C
Confidence 44 679999999999988887778999999986 432 333 2345678888 788999988886 4788999998 4
Q ss_pred CCCCcce-Eec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1584 IAGGPMH-SFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1584 ~~gk~l~-tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
++... .+. ....+++.++|+.+++. ..++.|..||. +++...... + ........++++++|++
T Consensus 129 --g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~---~~~~~i~~~~~-~g~~~~~~~-~-----~~~~~~~~i~~~~~g~l 196 (299)
T 2z2n_A 129 --GKIREYELPNKGSYPSFITLGSDNALWFTE---NQNNAIGRITE-SGDITEFKI-P-----TPASGPVGITKGNDDAL 196 (299)
T ss_dssp --CCEEEEECSSTTCCEEEEEECTTSCEEEEE---TTTTEEEEECT-TCCEEEEEC-S-----STTCCEEEEEECTTSSE
T ss_pred --CCEEEecCCCCCCCCceEEEcCCCCEEEEe---CCCCEEEEEcC-CCcEEEeeC-C-----CCCCcceeEEECCCCCE
Confidence 33222 111 24789999999888776 56688999999 666543211 0 11223345899999998
Q ss_pred Eeecc-----EEEEcCCCcceeeec--cCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE--cCCC--ceeE
Q 000177 1659 LLWNG-----ILWDRRNSVPVHRFD--QFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV--PSLD--QTTI 1721 (1922)
Q Consensus 1659 LaSgg-----rLWDlrtgk~I~kf~--gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl--~gH~--~~sV 1721 (1922)
+++.. ..||. +++.. .+. .....+ +++++++|+..++.. .+||. +++. ..+ +.+. ..++
T Consensus 197 ~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i 272 (299)
T 2z2n_A 197 WFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGI 272 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEE
T ss_pred EEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceE
Confidence 87652 77887 66533 332 222334 899999999766642 36777 4543 333 2222 2688
Q ss_pred EEccCCCEEEEE
Q 000177 1722 TFNARGDVIYAI 1733 (1922)
Q Consensus 1722 aFSPdG~~LaSg 1733 (1922)
++ ++|.+.++.
T Consensus 273 ~~-~~g~l~v~~ 283 (299)
T 2z2n_A 273 CF-DGETIWFAM 283 (299)
T ss_dssp EE-CSSCEEEEE
T ss_pred Ee-cCCCEEEEe
Confidence 88 888877765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.49 E-value=8.1e-07 Score=108.39 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=115.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---------cee-eeccCCCCeeEEEeeecCCCcEEEEecCCcEEEe
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---------PLE-SCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---------~l~-tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLW 1579 (1922)
..++.+++++...++++|+.++ +++|++.... ... ....+.. |+.| +| |+++|+.+.++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l--~f--d~~~L~v~~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFV--CF--HGDQVLVSTRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEE--EE--ETTEEEEEESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEE--EE--CCCEEEEEcCCcEEEE
Confidence 3589999999999999999985 5569864332 111 2234666 9999 77 8899999899999999
Q ss_pred ccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
|+.+ ......... ..++.+.+. .++++ +.||.|.+||+.+++... +. ..+.+++|||+
T Consensus 112 dv~s--l~~~~~~~~~~~~v~~i~~~~p--~~av~---~~dG~L~v~dl~~~~~~~-~~----------~~Vs~v~WSpk 173 (388)
T 1xip_A 112 DLEE--LSEFRTVTSFEKPVFQLKNVNN--TLVIL---NSVNDLSALDLRTKSTKQ-LA----------QNVTSFDVTNS 173 (388)
T ss_dssp ESSS--TTCEEEEEECSSCEEEEEECSS--EEEEE---ETTSEEEEEETTTCCEEE-EE----------ESEEEEEECSS
T ss_pred Echh--hhccCccceeecceeeEEecCC--CEEEE---ECCCCEEEEEccCCcccc-cc----------CCceEEEEcCC
Confidence 9987 222222222 245555543 27777 789999999999877643 22 35667999999
Q ss_pred CCeEeecc---EEEEcCCCcc--eeee------c---cCCCce-EEEEecCCCEEEEEe
Q 000177 1656 DTMLLWNG---ILWDRRNSVP--VHRF------D---QFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1656 G~lLaSgg---rLWDlrtgk~--I~kf------~---gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
|..+.... ++|+...+.. .+++ . +|...+ ++.|.+++.++++-.
T Consensus 174 G~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 174 QLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 93333222 8898877664 5555 2 245555 899999999888543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.45 E-value=7.7e-06 Score=94.31 Aligned_cols=179 Identities=9% Similarity=0.072 Sum_probs=117.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc----CCCCeeEEEeeecCCCcEEEEec-C---------Cc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS----HQAPVTLVQSHLSGETQLLLSSS-S---------QD 1575 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g----Hss~VtsLq~afSpDG~lLaSSs-D---------gt 1575 (1922)
..+.+++|+++|+++++ . ++.|.+||..+++....... ....++.+ .++++|+++++.. . ..
T Consensus 54 ~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di--~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 54 APVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDG--KVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp SCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEE--EECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCE--EECCCCCEEEecCCcccccccccCCC
Confidence 67999999999995554 4 56899999988765432221 12346778 8899999888742 1 33
Q ss_pred EEEeccCCCCCCcceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEEC--CCCcee--eeeccccccccCCCCcce
Q 000177 1576 VHLWNASSIAGGPMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDI--QTYQLE--AKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDl--rTgk~i--~tL~d~s~~~~~~gh~~~ 1648 (1922)
..||.+... ++..... ...+.++|+|+++.++.+ ++.++.|.+||+ .++... ..+.. .. .......
T Consensus 130 ~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~--~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~--~~~~~p~ 202 (297)
T 3g4e_A 130 GALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYI--DSLSYSVDAFDYDLQTGQISNRRSVYK--LE--KEEQIPD 202 (297)
T ss_dssp EEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEE--EGGGTEEEEEEECTTTCCEEEEEEEEE--CC--GGGCEEE
T ss_pred cEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEe--cCCCCcEEEEeccCCCCcccCcEEEEE--CC--CCCCCCC
Confidence 466666531 3322222 224789999999977655 255788999997 455432 11110 00 0011122
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEe-cCCCEEEEEe
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFH-PAGNEVIINS 1699 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFS-PdG~~LASGS 1699 (1922)
.++++++|++.++.. ..||..+++.+..+..+...+ +++|. |+++.|.+.+
T Consensus 203 g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 203 GMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred eeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 389999998877642 788888899988888775555 99998 8988776665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00014 Score=82.62 Aligned_cols=225 Identities=9% Similarity=0.082 Sum_probs=134.7
Q ss_pred CCCeeEEEeeecCCCcEEEE--------ecCCcEEEeccCCCCCCcceEe--------ccceeEEEcCC-CCEEEEeecC
Q 000177 1551 QAPVTLVQSHLSGETQLLLS--------SSSQDVHLWNASSIAGGPMHSF--------EGCKAARFSNS-GNLFAALPTE 1613 (1922)
Q Consensus 1551 ss~VtsLq~afSpDG~lLaS--------SsDgtVkLWDl~t~~gk~l~tf--------~gh~sVaFSPD-G~~LaSgS~~ 1613 (1922)
-....++ +|++++.++++ ..++.|.+||..+ ++..... ....++.++++ |+.+++.
T Consensus 17 ~~~~~~~--~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~--- 89 (314)
T 1pjx_A 17 IPGAEGP--VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD--- 89 (314)
T ss_dssp CTTCEEE--EECTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEEE---
T ss_pred CCCccCc--eECCCCCEEEEEeccccCCCCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCcEEEEE---
Confidence 3456788 77899998888 4588999999876 4432211 22478999999 7766664
Q ss_pred CCCCeEEEEECCCCceeee-eccccccccCCCCcceEEEEcCCCCeEeec------------------cEEEEcCC-Ccc
Q 000177 1614 TSDRGILLYDIQTYQLEAK-LSDTSVNLTGRGHAYSQIHFSPSDTMLLWN------------------GILWDRRN-SVP 1673 (1922)
Q Consensus 1614 S~DgtIrIWDlrTgk~i~t-L~d~s~~~~~~gh~~~vVaFSPdG~lLaSg------------------grLWDlrt-gk~ 1673 (1922)
. .+.|.+||.. ++.... .. .. ..........++++|+|+++++. +.+|.+.. ++.
T Consensus 90 ~-~~~l~~~d~~-g~~~~~~~~-~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 164 (314)
T 1pjx_A 90 M-RLGLLVVQTD-GTFEEIAKK-DS--EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM 164 (314)
T ss_dssp T-TTEEEEEETT-SCEEECCSB-CT--TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred C-CCCEEEEeCC-CCEEEEEec-cC--CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCE
Confidence 3 3469999998 665432 21 00 00011234459999999988864 34555542 443
Q ss_pred eeeeccCCCceEEEEe----cCCCEEEEEe------EEEecC-CCe-----EEEEEcCCC---ceeEEEccCCCEEEEEE
Q 000177 1674 VHRFDQFTDHGGGGFH----PAGNEVIINS------EVWDLR-KFR-----LLRSVPSLD---QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1674 I~kf~gh~~~VsVaFS----PdG~~LASGS------eIWDLr-Tgk-----lL~tl~gH~---~~sVaFSPdG~~LaSgs 1734 (1922)
...+........++|+ |+|+.|..+. .+||+. +++ .+..+.++. ...++++++|.+.++..
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 3322222223388999 9997655443 367765 454 333444442 26899999998877763
Q ss_pred ccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1735 RRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1735 ~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+ .+..++..+...+..+... ..+..+++++++..+.+..... ..+..|++.
T Consensus 245 ~~~-------------------~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~~ 298 (314)
T 1pjx_A 245 GSS-------------------HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEWQ 298 (314)
T ss_dssp TTT-------------------EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT-----TEEEEEECS
T ss_pred CCC-------------------EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC-----CeEEEEeCC
Confidence 222 2344444333333334333 5688999999998777664221 345556553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-06 Score=101.08 Aligned_cols=221 Identities=14% Similarity=0.029 Sum_probs=135.3
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccC-------CCCeeE
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSH-------QAPVTL 1556 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gH-------ss~Vts 1556 (1922)
...+++.+.++.--. .+ .+.|+|||++|+++. .+++|.+||+.+++.+.++.-+ ......
T Consensus 52 D~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ 128 (368)
T 1mda_H 52 CAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHI 128 (368)
T ss_dssp ETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTS
T ss_pred ECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcce
Confidence 345677788776544 45 799999999998887 4789999999999999988533 123456
Q ss_pred EEeeecCCCcEEEEec---CCcEEE--eccCCCCCCcceEec--cc---------eeEEEcCCCCEEEEeecC-------
Q 000177 1557 VQSHLSGETQLLLSSS---SQDVHL--WNASSIAGGPMHSFE--GC---------KAARFSNSGNLFAALPTE------- 1613 (1922)
Q Consensus 1557 Lq~afSpDG~lLaSSs---DgtVkL--WDl~t~~gk~l~tf~--gh---------~sVaFSPDG~~LaSgS~~------- 1613 (1922)
+ .++|||++++.+. ...|.+ ||..+ +.++. ++ ..+.++++++.++.....
T Consensus 129 i--a~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 129 I--GNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp E--EECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred E--EEcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 6 7899999887752 467888 99964 12221 10 112222332222211000
Q ss_pred ---------------------------CCCCeEEEEECCCCc--eeeeeccccc---cccCCCCcceEEEEcCCCCeEee
Q 000177 1614 ---------------------------TSDRGILLYDIQTYQ--LEAKLSDTSV---NLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1614 ---------------------------S~DgtIrIWDlrTgk--~i~tL~d~s~---~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+. +.+.+.|+.++. .+.++.-... ......+....+.|+|+++.++.
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 11 344445543321 1111110000 00000011112689999876652
Q ss_pred ------c-----c---EEEEcCCCcceeeeccCCCceEEEEecCCCE-EEEEe------EEEecCCCeEEEEEcCCCc-e
Q 000177 1662 ------N-----G---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNE-VIINS------EVWDLRKFRLLRSVPSLDQ-T 1719 (1922)
Q Consensus 1662 ------g-----g---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~-LASGS------eIWDLrTgklL~tl~gH~~-~ 1719 (1922)
+ + .+||+.+++.+.++........+.|+|+|++ ++++. .+||+.+++.+++++.... +
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 2 6999999999998876655559999999984 44443 3999999999999985554 6
Q ss_pred eEEEcc
Q 000177 1720 TITFNA 1725 (1922)
Q Consensus 1720 sVaFSP 1725 (1922)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-05 Score=102.22 Aligned_cols=217 Identities=13% Similarity=0.134 Sum_probs=132.1
Q ss_pred cCCCCeeEEEeeecCCCcEEEEe-----c-CCcEEEeccCCCCCCcce-Eeccc--eeEEEcCCCCEEEEeecC------
Q 000177 1549 SHQAPVTLVQSHLSGETQLLLSS-----S-SQDVHLWNASSIAGGPMH-SFEGC--KAARFSNSGNLFAALPTE------ 1613 (1922)
Q Consensus 1549 gHss~VtsLq~afSpDG~lLaSS-----s-DgtVkLWDl~t~~gk~l~-tf~gh--~sVaFSPDG~~LaSgS~~------ 1613 (1922)
+|...+..+ .|||||++|+.+ + ..+|++||+.+ ++.+. .+.+. ..++|+ ||+.|+.++.+
T Consensus 126 ~~~~~l~~~--~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t--g~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQL--SFSRDGRILAYSLSLAGSDWREIHLMDVES--KQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEE--EECTTSSEEEEEEECSSCCEEEEEEEETTT--CSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEE--EECCCCCEEEEEEecCCCceEEEEEEECCC--CCCCccccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence 355567777 899999988853 2 24799999998 65443 34444 578999 99998888433
Q ss_pred ----CCCCeEEEEECCCCce--eeeeccccccccCCC-Ccc--eEEEEcCCCCeEeecc---------EEEEcCCCc-ce
Q 000177 1614 ----TSDRGILLYDIQTYQL--EAKLSDTSVNLTGRG-HAY--SQIHFSPSDTMLLWNG---------ILWDRRNSV-PV 1674 (1922)
Q Consensus 1614 ----S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~g-h~~--~vVaFSPdG~lLaSgg---------rLWDlrtgk-~I 1674 (1922)
.....|++|++.++.. ...+. ... +.. ..+.|+|||++|+... .+||+.++. ..
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~-------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFG-------AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEES-------CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEe-------cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 1224599999987653 22222 112 222 3488999999886211 788887764 45
Q ss_pred eeeccCCCceEEEEecCCCEEEEEe-------E--EEecCCCeE--EEEEcCCCceeEEEccCCCEEEEEEccCchhhhh
Q 000177 1675 HRFDQFTDHGGGGFHPAGNEVIINS-------E--VWDLRKFRL--LRSVPSLDQTTITFNARGDVIYAILRRNLEDVMS 1743 (1922)
Q Consensus 1675 ~kf~gh~~~VsVaFSPdG~~LASGS-------e--IWDLrTgkl--L~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s 1743 (1922)
..+..+.....-.|+++|..|+..+ + +||+.++.. .+.+..+....+.|+++|++|+.....+..
T Consensus 274 ~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~---- 349 (693)
T 3iuj_A 274 LTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDAT---- 349 (693)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTE----
T ss_pred EEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCe----
Confidence 5666665555333677776665444 2 577776543 234444544334999999999877544311
Q ss_pred hhcccccccCCcceEEEEecCCCceeeeecc--CCceEEEEEcCCCceEEEEe
Q 000177 1744 AVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1744 ~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dLa~SPdds~LAVVe 1794 (1922)
..+.+++... .....+.. ...+..+.+++++..+.+..
T Consensus 350 ------------~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ 389 (693)
T 3iuj_A 350 ------------ARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGF 389 (693)
T ss_dssp ------------EEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEE
T ss_pred ------------eEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEe
Confidence 1233443321 12222222 23466677788887776654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-05 Score=89.42 Aligned_cols=193 Identities=8% Similarity=0.045 Sum_probs=123.1
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee---ccC-CCCeeEEEeeecCCCcEEEE----ec
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC---TSH-QAPVTLVQSHLSGETQLLLS----SS 1572 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL---~gH-ss~VtsLq~afSpDG~lLaS----Ss 1572 (1922)
..++..+. ..+..++|+++|+++++...++.|.+|+.+ ++..... .+. ...++.+ .++++|+++++ +.
T Consensus 78 ~~~~~~~~-~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i--~~d~dG~l~~td~~~g~ 153 (305)
T 3dr2_A 78 VDVLLDAT-AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDL--IVARDGAIWFTDPPFGL 153 (305)
T ss_dssp EEEEEESC-SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCE--EECTTSCEEEECCSGGG
T ss_pred EEEEeCCC-CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCE--EECCCCCEEEeCcCCCc
Confidence 34455566 678999999999977666667889999986 5532221 111 2346778 78999999987 22
Q ss_pred --------------CCcEEEeccCCCCCCcce--EeccceeEEEcCCCCEEEEeecCC---CCCeEEEEECCCCceeeee
Q 000177 1573 --------------SQDVHLWNASSIAGGPMH--SFEGCKAARFSNSGNLFAALPTET---SDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1573 --------------DgtVkLWDl~t~~gk~l~--tf~gh~sVaFSPDG~~LaSgS~~S---~DgtIrIWDlrTgk~i~tL 1633 (1922)
.+.|..||..+ ++... .+...+.++|+|+++.|+.+.... ..+.|.+||+..+. +...
T Consensus 154 ~~~~~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~ 230 (305)
T 3dr2_A 154 RKPSQGCPADPELAHHSVYRLPPDG--SPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR 230 (305)
T ss_dssp SCGGGSCCCCCSSSCEEEEEECSSS--CCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE
T ss_pred cccccccccccccCCCeEEEEcCCC--CcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC
Confidence 24577777755 44332 223347899999999777662110 03789999987654 2111
Q ss_pred ccccccccCCCCcceEEEEcCCCCeEeecc---EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--EEEec
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--EVWDL 1704 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--eIWDL 1704 (1922)
. .......+. ...++++++|++.++.. .+||. .++.+.++.......+++|+|+++.|.+++ .+|-+
T Consensus 231 ~--~~~~~~~~~-pdgi~~d~~G~lwv~~~~gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 231 R--HFASVPDGL-PDGFCVDRGGWLWSSSGTGVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp E--EEECCSSSC-CCSEEECTTSCEEECCSSEEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred e--EEEECCCCC-CCeEEECCCCCEEEecCCcEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 1 000000111 12288999999777654 78887 577777777665444899999998777665 35443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00027 Score=79.25 Aligned_cols=206 Identities=8% Similarity=-0.026 Sum_probs=134.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk 1587 (1922)
..+.+++++++|++.++...++.|.+||.. ++... .+..+...+.++ .+.++++++++.. ++.|..||... +
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~~~~g---~ 135 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGI--TEGLNGDIWFTQLNGDRIGKLTADG---T 135 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE--EECSTTCEEEEETTTTEEEEECTTS---C
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccc--eECCCCCEEEEccCCCeEEEECCCC---C
Confidence 678999999999988877778999999987 55432 223344678888 7889999888865 78899998762 2
Q ss_pred cc-eEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1588 PM-HSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1588 ~l-~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
.. ..+. ..+.+++.++|+.+++. ..++.|..||. +++... +.. .........++++++|.++++.
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~---~~~~~i~~~~~-~g~~~~-~~~-----~~~~~~~~~i~~d~~g~l~v~~ 205 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTE---NQNNSIGRITN-TGKLEE-YPL-----PTNAAAPVGITSGNDGALWFVE 205 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEE---TTTTEEEEECT-TCCEEE-EEC-----SSTTCCEEEEEECTTSSEEEEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEe---cCCCeEEEECC-CCcEEE-eeC-----CCCCCCcceEEECCCCCEEEEc
Confidence 22 1122 23788999999977765 55688999998 555433 320 0111223448999999888765
Q ss_pred c-----EEEEcCCCcceee-eccCCCce-EEEEecCCCEEEEEe---E--EEecCCCeEEEE-EcCC--CceeEEEccCC
Q 000177 1663 G-----ILWDRRNSVPVHR-FDQFTDHG-GGGFHPAGNEVIINS---E--VWDLRKFRLLRS-VPSL--DQTTITFNARG 1727 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~k-f~gh~~~V-sVaFSPdG~~LASGS---e--IWDLrTgklL~t-l~gH--~~~sVaFSPdG 1727 (1922)
. .+||. +++.... +......+ +++++++|+..++.. . .||. +++.... ++.. ...++++.++|
T Consensus 206 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g 283 (300)
T 2qc5_A 206 IMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG 283 (300)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS
T ss_pred cCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC
Confidence 3 56676 4543322 22222333 899999998766652 3 6666 3443321 2211 22789999999
Q ss_pred CEEEEE
Q 000177 1728 DVIYAI 1733 (1922)
Q Consensus 1728 ~~LaSg 1733 (1922)
.+.++.
T Consensus 284 ~l~v~~ 289 (300)
T 2qc5_A 284 SVWFAL 289 (300)
T ss_dssp CEEEEC
T ss_pred CEEEEc
Confidence 866654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.27 E-value=6e-05 Score=93.29 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=132.3
Q ss_pred CCCcEEEEe--cCCcEEEeccCCCCC--CcceEec--------c---ceeEEEcCCCCEEEEeecC---CCCCeEEEEEC
Q 000177 1563 GETQLLLSS--SSQDVHLWNASSIAG--GPMHSFE--------G---CKAARFSNSGNLFAALPTE---TSDRGILLYDI 1624 (1922)
Q Consensus 1563 pDG~lLaSS--sDgtVkLWDl~t~~g--k~l~tf~--------g---h~sVaFSPDG~~LaSgS~~---S~DgtIrIWDl 1624 (1922)
.++++|+.+ .+++|.++|+.+... +...++. + -+.+...|+| .++++..+ ...+.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788888774 388999999975222 2334452 1 1456788999 77765221 12378999999
Q ss_pred CCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec---------------------c---EEEEcCCCcceeeeccC
Q 000177 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN---------------------G---ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1625 rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg---------------------g---rLWDlrtgk~I~kf~gh 1680 (1922)
.+++.+.++.... .. ..-...+.|+|+++.+++. + .+||+.+++.+.++...
T Consensus 172 ~T~~v~~~~~~~~-~~---~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 172 YSFEPLGKWEIDR-GD---QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp TTCCEEEECCSBC-TT---CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred CCCeEEEEEccCC-CC---ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 9999999886110 00 0111127889999988866 3 89999999888888764
Q ss_pred CC---ceEEEE--ecCCCEEEEEeE---------EE--ecCCC--eEEEEE--cC------------------CCceeEE
Q 000177 1681 TD---HGGGGF--HPAGNEVIINSE---------VW--DLRKF--RLLRSV--PS------------------LDQTTIT 1722 (1922)
Q Consensus 1681 ~~---~VsVaF--SPdG~~LASGSe---------IW--DLrTg--klL~tl--~g------------------H~~~sVa 1722 (1922)
.. ...+.| +|+|+++.++++ || ....+ +.++.+ +. .....+.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 21 224545 999998777653 32 22222 222221 11 1126899
Q ss_pred EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC---CCceeeeeccCC---------------ceEEEEEc
Q 000177 1723 FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI---NYSDIATIPVDR---------------CVLDFATE 1784 (1922)
Q Consensus 1723 FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~---dys~IaTidvkr---------------~I~dLa~S 1784 (1922)
+||||++||++.... ..+.+++.. +.+.+..+.... .-.++.++
T Consensus 328 lS~DGrfLYVSnrg~------------------d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 328 ISLDDKFLYLSLWGI------------------GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp ECTTSCEEEEEETTT------------------TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ECCCCCEEEEEeCCC------------------CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 999999999984321 234444432 334455554431 24788999
Q ss_pred CCCceEEEEe
Q 000177 1785 RTDSFVGLIT 1794 (1922)
Q Consensus 1785 Pdds~LAVVe 1794 (1922)
|+|+++.+..
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999886
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.4e-05 Score=95.44 Aligned_cols=204 Identities=12% Similarity=0.145 Sum_probs=132.2
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCC----Cceeeec------cCC-CCeeEEEeeecCCCcEEEEe-cC------CcEEEe
Q 000177 1519 GDSSHIA-VGSHTKELKIFDSNSS----SPLESCT------SHQ-APVTLVQSHLSGETQLLLSS-SS------QDVHLW 1579 (1922)
Q Consensus 1519 PDG~lLA-SGS~DGtIkIWDl~tg----k~l~tL~------gHs-s~VtsLq~afSpDG~lLaSS-sD------gtVkLW 1579 (1922)
+++++|+ +|..++.|.|+|+.+. +..+++. .+. ..-..+ ..+|+| +++++ .+ +.|.++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~--~~~pdG-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTV--HCGPDA-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEE--EECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccce--eECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence 6777665 5667889999999755 4445552 011 123344 568999 66663 23 689999
Q ss_pred ccCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecC----------------CCCCeEEEEECCCCceeeeeccc
Q 000177 1580 NASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTE----------------TSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~----------------S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
|..+ .+.+.++.. ...+-|+|+++.+++...+ ....+|.+||+.+++.+.++.
T Consensus 170 D~~T--~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~-- 245 (462)
T 2ece_A 170 DHYS--FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT-- 245 (462)
T ss_dssp CTTT--CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE--
T ss_pred ECCC--CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe--
Confidence 9998 778877752 1447889999998886321 136899999999998888876
Q ss_pred cccccCCCCcceE-EEE--cCCCCeEeecc---------E--EEEcCCCc--ceeee-------cc------------CC
Q 000177 1637 SVNLTGRGHAYSQ-IHF--SPSDTMLLWNG---------I--LWDRRNSV--PVHRF-------DQ------------FT 1681 (1922)
Q Consensus 1637 s~~~~~~gh~~~v-VaF--SPdG~lLaSgg---------r--LWDlrtgk--~I~kf-------~g------------h~ 1681 (1922)
.+..+..+. +.| +|+++++.... . +|....++ .+..+ .+ ..
T Consensus 246 ----vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 246 ----LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp ----SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred ----cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence 111122232 444 99998765322 2 22222221 11111 00 12
Q ss_pred CceEEEEecCCCEEEEEe------EEEecC---CCeEEEEEcCC----------------CceeEEEccCCCEEEEE
Q 000177 1682 DHGGGGFHPAGNEVIINS------EVWDLR---KFRLLRSVPSL----------------DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1682 ~~VsVaFSPdG~~LASGS------eIWDLr---TgklL~tl~gH----------------~~~sVaFSPdG~~LaSg 1733 (1922)
....+.+||||++|.++. .++|+. +.+++..++-. .-..+.++|+|++|+++
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 223789999999999888 378874 35777777632 12789999999999998
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=105.42 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=102.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc---
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC--- 1595 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh--- 1595 (1922)
++..|++|+.||.|+.||..+|+.+.++.. ..+.+. .+..++.++++ +.|+.|+.||..+ ++.+..+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~--p~~~~g~~~v~~s~dg~l~a~d~~t--G~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQV--PTHVEEPAFLPDPNDGSLYTLGSKN--NEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCC--C-----CCEEECTTTCCEEEC-------CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceec--ceEcCCCEEEEeCCCCEEEEEECCC--CceeeeeeccCcc
Confidence 578999999999999999999999888875 455555 45567777776 5799999999987 6666665432
Q ss_pred ---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEE
Q 000177 1596 ---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWD 1667 (1922)
Q Consensus 1596 ---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWD 1667 (1922)
.+..+. .+..++++ +.|+.|+.||..+|+.+.++. .+. ...++|++..+++++ +.||
T Consensus 82 ~~~~sp~~~-~~~~v~~g---~~dg~v~a~D~~tG~~~w~~~---------~~~--~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMG---KKQDIWYVIDLLTGEKQQTLS---------SAF--ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp HHTTCSCC------CCCC---EEEEEEEEECCC---------------------------------EEEEEEEEEEECCC
T ss_pred ccccCceEe-cCCEEEEE---eCCCEEEEEECCCCcEEEEec---------CCC--cccccccCCEEEEEecCCEEEEEE
Confidence 111121 34556666 667899999999999887765 111 244567777777554 8899
Q ss_pred cCCCcceeeeccCCCceEEEEecCC---CEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCE
Q 000177 1668 RRNSVPVHRFDQFTDHGGGGFHPAG---NEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDV 1729 (1922)
Q Consensus 1668 lrtgk~I~kf~gh~~~VsVaFSPdG---~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~ 1729 (1922)
.++|+.+.++.... .....+.+++ ..+++++ ..||..+++.+-++.-... ....++++|..
T Consensus 147 ~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 147 TKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp SSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred CCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 99999877765321 1122333321 3344443 3789999998877663222 34556667754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=5.7e-05 Score=88.61 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=113.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc---C-CCCeeEEEeeecCCCcEEEEec-C----CcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS---H-QAPVTLVQSHLSGETQLLLSSS-S----QDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g---H-ss~VtsLq~afSpDG~lLaSSs-D----gtVkLWD 1580 (1922)
..+.+++|+++|+++++. .+ .|.+||..+++....... + ...++.+ .++++|+++++.. + ....||.
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i--~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDG--RMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEE--EECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCE--EECCCCCEEEEeCCCcCCCCceEEEE
Confidence 569999999999877754 44 499999988875432211 1 2357788 8899999887743 1 2344444
Q ss_pred cCCCCCCcceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEECC--CC-cee--eeeccccccccCCCCcceEEEE
Q 000177 1581 ASSIAGGPMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDIQ--TY-QLE--AKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1581 l~t~~gk~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr--Tg-k~i--~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
+.+ ++..... ...+.++|+|+++.++.+ ++.++.|.+||+. ++ ... ..+.. . .........+++
T Consensus 166 ~~~--g~~~~~~~~~~~~~~i~~s~dg~~lyv~--~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--~--~~~~~~p~gi~~ 237 (326)
T 2ghs_A 166 VAK--GKVTKLFADISIPNSICFSPDGTTGYFV--DTKVNRLMRVPLDARTGLPTGKAEVFID--S--TGIKGGMDGSVC 237 (326)
T ss_dssp EET--TEEEEEEEEESSEEEEEECTTSCEEEEE--ETTTCEEEEEEBCTTTCCBSSCCEEEEE--C--TTSSSEEEEEEE
T ss_pred EeC--CcEEEeeCCCcccCCeEEcCCCCEEEEE--ECCCCEEEEEEcccccCCcccCceEEEE--C--CCCCCCCCeeEE
Confidence 433 4332221 224789999999877655 2556899999986 55 321 11210 0 001112234899
Q ss_pred cCCCCeEeec---c--EEEEcCCCcceeeeccCCCce-EEEEe-cCCCEEEEEe
Q 000177 1653 SPSDTMLLWN---G--ILWDRRNSVPVHRFDQFTDHG-GGGFH-PAGNEVIINS 1699 (1922)
Q Consensus 1653 SPdG~lLaSg---g--rLWDlrtgk~I~kf~gh~~~V-sVaFS-PdG~~LASGS 1699 (1922)
+++|.+.++. + ..||. +++.+..+..+...+ +++|+ |++..|++++
T Consensus 238 d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 238 DAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 9999987764 2 77887 677777777666556 89998 8988776554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.8e-05 Score=97.80 Aligned_cols=206 Identities=9% Similarity=0.044 Sum_probs=140.1
Q ss_pred CCCCEEEEEeCC-CcEEEEECCCCCceeeecc-CCCCeeEEEeee-c-CCCcEEEEec-------------------CCc
Q 000177 1519 GDSSHIAVGSHT-KELKIFDSNSSSPLESCTS-HQAPVTLVQSHL-S-GETQLLLSSS-------------------SQD 1575 (1922)
Q Consensus 1519 PDG~lLASGS~D-GtIkIWDl~tgk~l~tL~g-Hss~VtsLq~af-S-pDG~lLaSSs-------------------Dgt 1575 (1922)
+||++|+....+ +.|.+.|+.+.++...+.- .......+ .+ + |++.++.++. ++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~--~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGL--RPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEE--EECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcce--eeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 378888777665 4699999999998875421 23457777 55 4 8998888762 447
Q ss_pred EEEeccCCCCCCcceEec--c-ceeEEEcCCCCEEEEeecCCCC-----------------------------------C
Q 000177 1576 VHLWNASSIAGGPMHSFE--G-CKAARFSNSGNLFAALPTETSD-----------------------------------R 1617 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~--g-h~sVaFSPDG~~LaSgS~~S~D-----------------------------------g 1617 (1922)
+.++|..+ .+.+.++. + -..++++|+|+++++++..+.. +
T Consensus 177 vtvID~~t--~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 177 FTAVDADK--WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEEETTT--TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEEECCC--CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 88899887 55555553 2 2568899999999888654422 2
Q ss_pred eEEEEECCC--Cce-eeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCc------------ceee
Q 000177 1618 GILLYDIQT--YQL-EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSV------------PVHR 1676 (1922)
Q Consensus 1618 tIrIWDlrT--gk~-i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk------------~I~k 1676 (1922)
.|.+.|.++ ++. +..++ .+.....+.++|||++++.++ .++|+.+.+ .+..
T Consensus 255 ~V~VID~~~~~~~~~~~~Ip--------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIP--------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEE--------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred cEEEEeCcccCCceeEEEEe--------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 366666666 333 33333 112222399999999988766 899988653 2334
Q ss_pred eccCCCceEEEEecCCCEEEEEe------EEEecCC----------CeEEEEEcCCCc-------eeEEEccCCCEEEEE
Q 000177 1677 FDQFTDHGGGGFHPAGNEVIINS------EVWDLRK----------FRLLRSVPSLDQ-------TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1677 f~gh~~~VsVaFSPdG~~LASGS------eIWDLrT----------gklL~tl~gH~~-------~sVaFSPdG~~LaSg 1733 (1922)
......+..++|+|+| ++.+.. -+||+.+ .+.+.++..|-+ ..++++|||++|++.
T Consensus 327 v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 4434455589999999 666655 3899987 678888886644 234668999999998
Q ss_pred EccC
Q 000177 1734 LRRN 1737 (1922)
Q Consensus 1734 s~~d 1737 (1922)
.+-.
T Consensus 406 Nk~s 409 (595)
T 1fwx_A 406 SKFS 409 (595)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 5433
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.001 Score=81.20 Aligned_cols=168 Identities=5% Similarity=-0.003 Sum_probs=101.3
Q ss_pred CeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecc--ceeEEEcCCCCEEEEeecCCCCC--eEEEEECCCC
Q 000177 1553 PVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEG--CKAARFSNSGNLFAALPTETSDR--GILLYDIQTY 1627 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g--h~sVaFSPDG~~LaSgS~~S~Dg--tIrIWDlrTg 1627 (1922)
....| +|+++++++++.. ++.|++||..+ +........ ..+++|+|+++.++.+ ..++ .|.+||..++
T Consensus 132 ~P~~l--a~d~~g~lyv~d~~~~~I~~id~~~--g~~~~~~~~~~~~~ia~~~~g~~l~~~---d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 132 YMWGI--AAVGNNTVLAYQRDDPRVRLISVDD--NKVTTVHPGFKGGKPAVTKDKQRVYSI---GWEGTHTVYVYMKASG 204 (409)
T ss_dssp CEEEE--EECSTTEEEEEETTTTEEEEEETTT--TEEEEEEETCCBCBCEECTTSSEEEEE---BSSTTCEEEEEEGGGT
T ss_pred CceEE--EEeCCCCEEEEecCCCcEEEEECCC--CEEEEeeccCCCCceeEecCCCcEEEE---ecCCCceEEEEEcCCC
Confidence 56778 7889999888854 78999999986 433322221 1229999999988887 3333 8999998876
Q ss_pred ceeeeeccccccccCCCCcceEEEEcC-CCCeEeecc----EEEEcCCCcceee----eccCCC--ce-EEEEecCCCEE
Q 000177 1628 QLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWNG----ILWDRRNSVPVHR----FDQFTD--HG-GGGFHPAGNEV 1695 (1922)
Q Consensus 1628 k~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSgg----rLWDlrtgk~I~k----f~gh~~--~V-sVaFSPdG~~L 1695 (1922)
.....+.... .........++++| ++.++++.. ..||..++..... ..+... +. .++|+|++..|
T Consensus 205 ~~~~~~g~~~---~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 205 WAPTRIGQLG---STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TCEEEEEECC---TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred ceeEEeeecc---chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 5544331000 00122233489999 566666443 6788776653221 222222 24 89999965544
Q ss_pred EEEe----E--EEecCCCeEEEEEcCCC-----------------ceeEEEccCCCEEEE
Q 000177 1696 IINS----E--VWDLRKFRLLRSVPSLD-----------------QTTITFNARGDVIYA 1732 (1922)
Q Consensus 1696 ASGS----e--IWDLrTgklL~tl~gH~-----------------~~sVaFSPdG~~LaS 1732 (1922)
..+. + .|+.. ++ +.++.++. ...++|+|+|+++++
T Consensus 282 yv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp EEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred EEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 4443 3 45554 33 44444432 268999999994444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=84.86 Aligned_cols=189 Identities=7% Similarity=0.060 Sum_probs=122.8
Q ss_pred eeeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeeccCCCC-eeEEEeeecCCCcEEEE-ecC
Q 000177 1499 RPWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCTSHQAP-VTLVQSHLSGETQLLLS-SSS 1573 (1922)
Q Consensus 1499 rpirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~gHss~-VtsLq~afSpDG~lLaS-SsD 1573 (1922)
+.++++ .|.... ...+.|+ ++.+..+.+.+| .|+++|+.+++.+.++.-.... --.+ .+..+ ++... -.+
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGi--t~~g~-~ly~ltw~~ 106 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGI--SDWKD-KIVGLTWKN 106 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEE--EEETT-EEEEEESSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEE--EEeCC-EEEEEEeeC
Confidence 445555 444233 4678898 677777777766 8999999999998887533221 1234 33333 33333 348
Q ss_pred CcEEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc---ceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA---YSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~---~~v 1649 (1922)
+.+.+||..+ .+.+.++.-- ....++++++.|+.+ ...+.|.++|..+.+.+.++.... .+.. .+-
T Consensus 107 ~~v~v~D~~t--~~~~~ti~~~~eG~glt~dg~~L~~S---dGs~~i~~iDp~T~~v~~~I~V~~-----~g~~~~~lNE 176 (262)
T 3nol_A 107 GLGFVWNIRN--LRQVRSFNYDGEGWGLTHNDQYLIMS---DGTPVLRFLDPESLTPVRTITVTA-----HGEELPELNE 176 (262)
T ss_dssp SEEEEEETTT--CCEEEEEECSSCCCCEEECSSCEEEC---CSSSEEEEECTTTCSEEEEEECEE-----TTEECCCEEE
T ss_pred CEEEEEECcc--CcEEEEEECCCCceEEecCCCEEEEE---CCCCeEEEEcCCCCeEEEEEEecc-----CCccccccce
Confidence 9999999998 7777777531 223444677777775 336889999999999988876211 1111 122
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccC-----------CCce--EEEEecCCCEEEEEeEEEe
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF-----------TDHG--GGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh-----------~~~V--sVaFSPdG~~LASGSeIWD 1703 (1922)
+.|. +|++++..- .+.|..+++.+.+++.. ...+ .++|+|+++.|.+.++.|.
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 5665 676655432 78888888887777532 0122 7889998888888887664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00014 Score=84.57 Aligned_cols=193 Identities=6% Similarity=0.038 Sum_probs=123.2
Q ss_pred ceeeEEecCCCCC-CEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEEe-c
Q 000177 1498 FRPWRTCRDDAGA-LLTCITFLGDSSHIAVGSH--TKELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLSS-S 1572 (1922)
Q Consensus 1498 frpirtLrgH~d~-~Vt~LaFSPDG~lLASGS~--DGtIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaSS-s 1572 (1922)
++.+.++ .|... ....+.|++|+.+.++.+. ++.|.++|+.+++.+.++.- .......+ .+.. +++.++. .
T Consensus 9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi--~~~g-~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGL--TLLN-EKLYQVVWL 84 (266)
T ss_dssp EEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEE--EEET-TEEEEEETT
T ss_pred ceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEE--EEeC-CEEEEEEec
Confidence 3445555 34412 3578999998754444443 58999999999999888742 22222345 4443 2444444 4
Q ss_pred CCcEEEeccCCCCCCcceEec-c-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC-cceE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFE-G-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH-AYSQ 1649 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~-g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh-~~~v 1649 (1922)
++.+.++|..+ .+.+.++. + -....+++||++++.+ ..+++|.++|..+.+.+.++....- +... ..+-
T Consensus 85 ~~~v~viD~~t--~~v~~~i~~g~~~g~glt~Dg~~l~vs---~gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~~ne 156 (266)
T 2iwa_A 85 KNIGFIYDRRT--LSNIKNFTHQMKDGWGLATDGKILYGS---DGTSILYEIDPHTFKLIKKHNVKYN---GHRVIRLNE 156 (266)
T ss_dssp CSEEEEEETTT--TEEEEEEECCSSSCCEEEECSSSEEEE---CSSSEEEEECTTTCCEEEEEECEET---TEECCCEEE
T ss_pred CCEEEEEECCC--CcEEEEEECCCCCeEEEEECCCEEEEE---CCCCeEEEEECCCCcEEEEEEECCC---Cccccccee
Confidence 89999999987 67777773 2 2334567788877776 3478999999999998888761100 0001 1233
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccC--------------CCceEEEEecCCCEEEEEeEEEe
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF--------------TDHGGGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh--------------~~~VsVaFSPdG~~LASGSeIWD 1703 (1922)
+.|. +|.++++.. .+.|..+++.+.++.-. .....++|+|+++.+.+.++.|+
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 6676 676655442 77888888888777532 11137888888887777775443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00025 Score=92.25 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=157.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccC-C----CCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCCCc
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSH-Q----APVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-s----s~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~gk~ 1588 (1922)
++..|++++.|+.|..+|..+|+.+-++..+ . ..+.+- -...++.+++.+. ++.|..||..+ ++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~--p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t--G~~ 202 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA--PRVFKGKVIIGNGGAEYGVRGYITAYDAET--GER 202 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC--CEEETTEEEECCBCTTTCCBCEEEEEETTT--CCE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC--cEEECCEEEEEecccccCCCCEEEEEECCC--CcE
Confidence 3568899999999999999999998877654 2 122211 0111455555543 68899999988 777
Q ss_pred ceEeccc------------------------------------eeEEEcCCCCEEEEeecCC------------CC----
Q 000177 1589 MHSFEGC------------------------------------KAARFSNSGNLFAALPTET------------SD---- 1616 (1922)
Q Consensus 1589 l~tf~gh------------------------------------~sVaFSPDG~~LaSgS~~S------------~D---- 1616 (1922)
+.++... ..++++|++..++.+..+. .|
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence 6655321 2467888888888772211 11
Q ss_pred CeEEEEECCCCceeeeeccccccc-cCCCCcceE-EEEcCCC---CeEeecc-----EEEEcCCCcceeeeccC------
Q 000177 1617 RGILLYDIQTYQLEAKLSDTSVNL-TGRGHAYSQ-IHFSPSD---TMLLWNG-----ILWDRRNSVPVHRFDQF------ 1680 (1922)
Q Consensus 1617 gtIrIWDlrTgk~i~tL~d~s~~~-~~~gh~~~v-VaFSPdG---~lLaSgg-----rLWDlrtgk~I~kf~gh------ 1680 (1922)
+.|..+|..||+.+..+.-..... .......++ +....+| ..++.++ +++|..+|+++..+...
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 259999999999988775110000 000011122 3444467 4555544 78888888877655321
Q ss_pred ------------------------------CCceEEEEecCCCEEEEE--------------------------------
Q 000177 1681 ------------------------------TDHGGGGFHPAGNEVIIN-------------------------------- 1698 (1922)
Q Consensus 1681 ------------------------------~~~VsVaFSPdG~~LASG-------------------------------- 1698 (1922)
.++-.++|+|++..++++
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 111256889988777663
Q ss_pred --------------e--EEEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEE
Q 000177 1699 --------------S--EVWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV 1761 (1922)
Q Consensus 1699 --------------S--eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~ 1761 (1922)
+ ..||+.|++.+-+++... .+...+...|..++.+. .+..++.+
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~-------------------~dg~l~a~ 503 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT-------------------ADGRLVAY 503 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-------------------TTSEEEEE
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC-------------------CCCcEEEE
Confidence 2 368888888887776332 24556667777777762 23568889
Q ss_pred ecCCCceeeeeccCCce--EEEEEcCCCceEEEE
Q 000177 1762 DAINYSDIATIPVDRCV--LDFATERTDSFVGLI 1793 (1922)
Q Consensus 1762 Da~dys~IaTidvkr~I--~dLa~SPdds~LAVV 1793 (1922)
|..+.+.+.++.....+ .-+.+..+|+...++
T Consensus 504 D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 504 HAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 99999999888775543 233445777644444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00061 Score=88.76 Aligned_cols=248 Identities=13% Similarity=0.089 Sum_probs=154.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeecc--CCCCeeEEEeeecC---CCcEEEEec------CCcEEEeccCCCCCCcc
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTS--HQAPVTLVQSHLSG---ETQLLLSSS------SQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~g--Hss~VtsLq~afSp---DG~lLaSSs------DgtVkLWDl~t~~gk~l 1589 (1922)
+..|++++.|+.|..||..+|+.+-.+.. +......+ ..+| ++.+++.+. ++.|..||..+ ++.+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~--~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~t--G~~~ 196 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTI--TGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAET--GKEA 196 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBC--CSCCEEETTEEEECCBCTTTCCBCEEEEEETTT--CCEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccc--cCCcEEECCEEEEEeCCCccCCCCEEEEEECCC--CcEE
Confidence 56889999999999999999998876643 22111111 1122 566665532 68899999998 7777
Q ss_pred eEeccc-----------------------------------eeEEEcCCCCEEEEeecCCCCC-----------------
Q 000177 1590 HSFEGC-----------------------------------KAARFSNSGNLFAALPTETSDR----------------- 1617 (1922)
Q Consensus 1590 ~tf~gh-----------------------------------~sVaFSPDG~~LaSgS~~S~Dg----------------- 1617 (1922)
.++... ..+++.|++.+++.+ +.++
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~---~~~g~~w~~~~~~~~~gd~~y 273 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIG---VGNGSLWDPKWRSQAKGDNLF 273 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEE---CCCEESSCHHHHHTTCSCCTT
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEe---CCCCCccccCCCCCCCCCcee
Confidence 665310 146788888888887 4443
Q ss_pred --eEEEEECCCCceeeeeccccccccCCCCcc-eE-EEEcCCCC---eEeecc-----EEEEcCCCcceeeecc------
Q 000177 1618 --GILLYDIQTYQLEAKLSDTSVNLTGRGHAY-SQ-IHFSPSDT---MLLWNG-----ILWDRRNSVPVHRFDQ------ 1679 (1922)
Q Consensus 1618 --tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-~v-VaFSPdG~---lLaSgg-----rLWDlrtgk~I~kf~g------ 1679 (1922)
.|..||..||+.+..+.......-...... .+ ..+..+|+ .++.++ ++||..+|+++.....
T Consensus 274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 499999999999887751100000000111 11 22223554 455444 7889888887633211
Q ss_pred ----------------------------------CCCceEEEEecCCCEEEEE---------------------------
Q 000177 1680 ----------------------------------FTDHGGGGFHPAGNEVIIN--------------------------- 1698 (1922)
Q Consensus 1680 ----------------------------------h~~~VsVaFSPdG~~LASG--------------------------- 1698 (1922)
...+-.++|+|+...|+++
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 1111247888887776654
Q ss_pred ---------------------e--EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCC
Q 000177 1699 ---------------------S--EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPL 1754 (1922)
Q Consensus 1699 ---------------------S--eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~ 1754 (1922)
+ ..||+.|++.+-+++.+.. ....+...|.+++.+. .
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt-------------------~ 494 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS-------------------A 494 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-------------------T
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC-------------------C
Confidence 1 2688888888877765443 3445666777777762 3
Q ss_pred cceEEEEecCCCceeeeeccCCceE--EEEEcCCCceEEEEe
Q 000177 1755 FAAFRTVDAINYSDIATIPVDRCVL--DFATERTDSFVGLIT 1794 (1922)
Q Consensus 1755 ~ssFrt~Da~dys~IaTidvkr~I~--dLa~SPdds~LAVVe 1794 (1922)
+..|+.+|..+.+.+..+.....+. -+.+..+|+...++.
T Consensus 495 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 495 DGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 4568999999999998887754432 355667887444443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00035 Score=89.11 Aligned_cols=203 Identities=11% Similarity=0.094 Sum_probs=133.2
Q ss_pred CCcEEEEec--CCcEEEeccCCCCCCcce--Eec---cceeEEE-c-CCCCEEEEeec---------------CCCCCeE
Q 000177 1564 ETQLLLSSS--SQDVHLWNASSIAGGPMH--SFE---GCKAARF-S-NSGNLFAALPT---------------ETSDRGI 1619 (1922)
Q Consensus 1564 DG~lLaSSs--DgtVkLWDl~t~~gk~l~--tf~---gh~sVaF-S-PDG~~LaSgS~---------------~S~DgtI 1619 (1922)
||+++..+. +..|.+.|+.+ .++.. .+. +...+++ + |+++++++++. ...++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t--~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDV--MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTT--TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCC--ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 788887753 66799999998 66655 332 2367777 5 89999887731 1245689
Q ss_pred EEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------------------------------------
Q 000177 1620 LLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------------------------------------ 1663 (1922)
Q Consensus 1620 rIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------------------------------------ 1663 (1922)
.++|..+.+.+.++.- +..-.-++++|+|+++++.+
T Consensus 178 tvID~~t~~v~~qI~V--------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLV--------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEEETTTTEEEEEEEE--------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EEEECCCCeEEEEEEe--------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 9999999988887751 11112267777777766332
Q ss_pred -------EEEEcCC--Ccc-eeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCe------------EEEEEc-
Q 000177 1664 -------ILWDRRN--SVP-VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFR------------LLRSVP- 1714 (1922)
Q Consensus 1664 -------rLWDlrt--gk~-I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgk------------lL~tl~- 1714 (1922)
.+.|.++ ++. +..+.......++.|+|||+++++++ .++|+.+.+ .+..++
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred eeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 4566665 444 44554444555899999999999988 388988653 444444
Q ss_pred CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC----------CceeeeeccCCceEEEEE-
Q 000177 1715 SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN----------YSDIATIPVDRCVLDFAT- 1783 (1922)
Q Consensus 1715 gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d----------ys~IaTidvkr~I~dLa~- 1783 (1922)
|.....++|+|+| ++|+...-+ +.+..|+..+ ...+.++++....-...+
T Consensus 330 G~gP~h~aF~~dG-~aY~t~~ld------------------sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 330 GLGPLHTAFDGRG-NAYTSLFLD------------------SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp CSCEEEEEECTTS-EEEEEETTT------------------TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred CCCcceEEECCCC-eEEEEEecC------------------CcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 3333899999999 888875432 2333343322 345666666655433444
Q ss_pred -----cCCCceEEEEec
Q 000177 1784 -----ERTDSFVGLITM 1795 (1922)
Q Consensus 1784 -----SPdds~LAVVe~ 1795 (1922)
+|+|+++.+...
T Consensus 391 ~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSK 407 (595)
T ss_dssp TTTSTTCCSSEEEEEES
T ss_pred cceEeCCCCCEEEEcCC
Confidence 689999887763
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00011 Score=86.81 Aligned_cols=182 Identities=8% Similarity=0.002 Sum_probs=113.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCceeeecc------CCCCeeEEEeeecCC-CcEEEE-e-
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSH-----TKELKIFDSNSSSPLESCTS------HQAPVTLVQSHLSGE-TQLLLS-S- 1571 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~-----DGtIkIWDl~tgk~l~tL~g------Hss~VtsLq~afSpD-G~lLaS-S- 1571 (1922)
+|. ..+..++|+++|+++++-+. ++.|.+||+.+++.+.++.. +...+..+ .++++ +.++++ .
T Consensus 64 ~~~-~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v--~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 64 ITF-DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDL--AVDLIHNFVYISDPA 140 (343)
T ss_dssp CCC-SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEE--EEETTTTEEEEEECC
T ss_pred cce-eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceE--EEecCCCEEEEEcCc
Confidence 355 67999999999987776554 68899999999987776642 23456888 78875 555566 3
Q ss_pred --cCCcEEEeccCCCCCCcceEe---------------------------------ccceeEEEcCCCCEEEEeecCCCC
Q 000177 1572 --SSQDVHLWNASSIAGGPMHSF---------------------------------EGCKAARFSNSGNLFAALPTETSD 1616 (1922)
Q Consensus 1572 --sDgtVkLWDl~t~~gk~l~tf---------------------------------~gh~sVaFSPDG~~LaSgS~~S~D 1616 (1922)
.++.|.+||+.+ ++..+.+ .+.+.++|+|+|++|+.+. ...
T Consensus 141 ~~~~~~i~v~d~~~--g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~ 216 (343)
T 2qe8_A 141 PDDKAALIRVDLQT--GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHS 216 (343)
T ss_dssp SGGGCEEEEEETTT--CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSC
T ss_pred cCCCCeEEEEECCC--CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCC
Confidence 578899999875 3322222 1236799999999888773 222
Q ss_pred CeEEEEECCC---Cce-----eeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccC-CC
Q 000177 1617 RGILLYDIQT---YQL-----EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF-TD 1682 (1922)
Q Consensus 1617 gtIrIWDlrT---gk~-----i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh-~~ 1682 (1922)
+.+..++... +.. ...+. .....+ ...-++++++|.++++.. .+||..+++........ ..
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~----~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~ 291 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIE----RYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLS 291 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCE----EEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGS
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceE----ecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCcee
Confidence 3454444321 100 00000 000011 112389999999888765 78998566533222221 22
Q ss_pred ce-EEEEecCCCEEEEEe
Q 000177 1683 HG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1683 ~V-sVaFSPdG~~LASGS 1699 (1922)
.. +++|.++|..+++.+
T Consensus 292 ~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 292 WTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CEEEEEECTTSCEEEEEC
T ss_pred cCCeeEECCCCcEEEEeC
Confidence 23 899999998877776
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=84.29 Aligned_cols=190 Identities=10% Similarity=0.105 Sum_probs=122.5
Q ss_pred eeeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCee--EEEeeecCCCcEEEEecCCc
Q 000177 1499 RPWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVT--LVQSHLSGETQLLLSSSSQD 1575 (1922)
Q Consensus 1499 rpirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vt--sLq~afSpDG~lLaSSsDgt 1575 (1922)
+.++++ .|.... ...+.|+ ++.+.++.+.+|.|+++|+.+++.+.++ - ....+ .+ .+..+.-|+++-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGi--t~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGL--ASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEE--EECSSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEE--EEeCCEEEEEEccCCE
Confidence 345555 344233 4678888 4667778888899999999999998877 2 22333 35 4444433333345999
Q ss_pred EEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC-cceEEEEc
Q 000177 1576 VHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH-AYSQIHFS 1653 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh-~~~vVaFS 1653 (1922)
+.+||..+ .+.+.++.-- ....+.++++.|+.+ ..++.|.++|..+.+.+.++.... .+... ..+-+.|.
T Consensus 118 v~V~D~~T--l~~~~ti~~~~eGwGLt~Dg~~L~vS---dGs~~l~~iDp~T~~v~~~I~V~~---~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 118 LFTWSGMP--PQRERTTRYSGEGWGLCYWNGKLVRS---DGGTMLTFHEPDGFALVGAVQVKL---RGQPVELINELECA 189 (268)
T ss_dssp EEEEETTT--TEEEEEEECSSCCCCEEEETTEEEEE---CSSSEEEEECTTTCCEEEEEECEE---TTEECCCEEEEEEE
T ss_pred EEEEECCc--CcEEEEEeCCCceeEEecCCCEEEEE---CCCCEEEEEcCCCCeEEEEEEeCC---CCcccccccccEEe
Confidence 99999998 7777777531 122334567888776 347899999999999988876211 00011 11235665
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccC------------CCce--EEEEecCCCEEEEEeEEEe
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQF------------TDHG--GGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh------------~~~V--sVaFSPdG~~LASGSeIWD 1703 (1922)
+|++++..- .+.|..+++.+.+++.. ...+ .++|+|+++.|.+.+|.|.
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 676665432 77888888887776432 1123 7888888777777776664
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00045 Score=79.32 Aligned_cols=192 Identities=13% Similarity=0.121 Sum_probs=120.1
Q ss_pred ceeeEEecCCCC-CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeeccCCCC-eeEEEeeecCCCcEEEE-ec
Q 000177 1498 FRPWRTCRDDAG-ALLTCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCTSHQAP-VTLVQSHLSGETQLLLS-SS 1572 (1922)
Q Consensus 1498 frpirtLrgH~d-~~Vt~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~gHss~-VtsLq~afSpDG~lLaS-Ss 1572 (1922)
++.++++ .|.. .....+.|++ +.+..+.+.+| .|+++|+.+++.+.++.-.... --.+ .+.. +++... -.
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi--~~~~-~~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGI--VAWR-DRLIQLTWR 83 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEE--EEET-TEEEEEESS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEE--EEeC-CEEEEEEee
Confidence 3455666 4542 3456889986 55666666654 8999999999998877433221 1233 3332 333333 34
Q ss_pred CCcEEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-CcceEE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-HAYSQI 1650 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-h~~~vV 1650 (1922)
++.+.+||..+ .+.+.++.-- ....+.++++.|+.+ ..++.|.++|..+.+.+.++.... .+.. ...+-+
T Consensus 84 ~~~v~v~D~~t--l~~~~ti~~~~~Gwglt~dg~~L~vS---dgs~~l~~iDp~t~~~~~~I~V~~---~g~~~~~lNeL 155 (243)
T 3mbr_X 84 NHEGFVYDLAT--LTPRARFRYPGEGWALTSDDSHLYMS---DGTAVIRKLDPDTLQQVGSIKVTA---GGRPLDNLNEL 155 (243)
T ss_dssp SSEEEEEETTT--TEEEEEEECSSCCCEEEECSSCEEEE---CSSSEEEEECTTTCCEEEEEECEE---TTEECCCEEEE
T ss_pred CCEEEEEECCc--CcEEEEEeCCCCceEEeeCCCEEEEE---CCCCeEEEEeCCCCeEEEEEEEcc---CCcccccceee
Confidence 89999999998 7777777531 223334567766665 347889999999999888876211 0001 111224
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcceeeeccC------------CCce--EEEEecCCCEEEEEeEEEe
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF------------TDHG--GGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh------------~~~V--sVaFSPdG~~LASGSeIWD 1703 (1922)
.|. +|++++..- .+.|..+|+.+..++-. ...+ .++|+|+++.|.+.++.|.
T Consensus 156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 444 666555432 78888888887776521 1123 7888888887777776664
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.9e-06 Score=103.49 Aligned_cols=182 Identities=11% Similarity=0.014 Sum_probs=89.4
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCc
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQD 1575 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgt 1575 (1922)
.+++.+..+.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+........+.+..++.+++.+.|+.
T Consensus 27 ~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~ 103 (369)
T 2hz6_A 27 RTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDI 103 (369)
T ss_dssp TTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEE
T ss_pred CCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCE
Confidence 34444444443 234445556678888888999999999999998877665442211100001123444444466999
Q ss_pred EEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1576 VHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
|..||..+ ++.+.++..+....++|++..++++ +.|+.|+.||.++|+.+..+... .+ ....++++
T Consensus 104 v~a~D~~t--G~~~w~~~~~~~~~~~p~~~~v~~~---~~dg~v~a~d~~tG~~~W~~~~~-------~~--~~~~~~~~ 169 (369)
T 2hz6_A 104 WYVIDLLT--GEKQQTLSSAFADSLSPSTSLLYLG---RTEYTITMYDTKTRELRWNATYF-------DY--AASLPEDD 169 (369)
T ss_dssp EEEECCC------------------------EEEE---EEEEEEECCCSSSSSCCCEEEEE-------EE--CCBCCCCC
T ss_pred EEEEECCC--CcEEEEecCCCcccccccCCEEEEE---ecCCEEEEEECCCCCEEEeEecc-------cc--cCccccCC
Confidence 99999998 8888777766556778888888888 67899999999999987766410 00 11222332
Q ss_pred ----CCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCE
Q 000177 1656 ----DTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNE 1694 (1922)
Q Consensus 1656 ----G~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~ 1694 (1922)
+.+++... ..||..+|+.+.++......+ ...++++|..
T Consensus 170 ~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 170 VDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp TTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred ccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 34444322 789999999888876443333 3455667753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00074 Score=87.82 Aligned_cols=206 Identities=13% Similarity=0.194 Sum_probs=136.5
Q ss_pred CCEEEEEeC------CCcEEEEECCCCCceeeeccCCCC--------------------------------eeEEEeeec
Q 000177 1521 SSHIAVGSH------TKELKIFDSNSSSPLESCTSHQAP--------------------------------VTLVQSHLS 1562 (1922)
Q Consensus 1521 G~lLASGS~------DGtIkIWDl~tgk~l~tL~gHss~--------------------------------VtsLq~afS 1562 (1922)
+..|++++. +|.|+.||..+|+.+-++...... ...+ +++
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~--~~d 251 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSM--TFD 251 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCE--EEE
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccce--eEc
Confidence 345666554 799999999999988766432211 1234 667
Q ss_pred CCCcEEEEec-CC-------------------cEEEeccCCCCCCcceEecc--c-----------eeEEEcCCC---CE
Q 000177 1563 GETQLLLSSS-SQ-------------------DVHLWNASSIAGGPMHSFEG--C-----------KAARFSNSG---NL 1606 (1922)
Q Consensus 1563 pDG~lLaSSs-Dg-------------------tVkLWDl~t~~gk~l~tf~g--h-----------~sVaFSPDG---~~ 1606 (1922)
+++.+|..+. ++ +|..+|..+ ++.+..++. + ..+....+| +.
T Consensus 252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~ 329 (677)
T 1kb0_A 252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKV 329 (677)
T ss_dssp TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEE
T ss_pred CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeE
Confidence 7777776643 32 488999988 787776653 1 112222366 56
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeecccccc---------------------------ccCCCCcc-eEEEEcCCCCe
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLSDTSVN---------------------------LTGRGHAY-SQIHFSPSDTM 1658 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~---------------------------~~~~gh~~-~vVaFSPdG~l 1658 (1922)
++.+ +.+|.++++|..+|+.+..+.-.... ....|... ..++|+|++.+
T Consensus 330 l~~~---~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 330 ILHA---PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEC---CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EEEE---CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 7777 78999999999999988766411000 00011111 13788888777
Q ss_pred Eeec----------------------------------------------c--EEEEcCCCcceeeeccCCCceEEEEec
Q 000177 1659 LLWN----------------------------------------------G--ILWDRRNSVPVHRFDQFTDHGGGGFHP 1690 (1922)
Q Consensus 1659 LaSg----------------------------------------------g--rLWDlrtgk~I~kf~gh~~~VsVaFSP 1690 (1922)
++.. + ..||+.+++.+.++.......+..+..
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~ 486 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT 486 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe
Confidence 6541 3 679999999888876544334556777
Q ss_pred CCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1691 AGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1691 dG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
.|..+++++ .+||.++++.+.++..... .-+.|.++|+.+++.
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 778888777 4899999999999873332 678888999766554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0065 Score=68.53 Aligned_cols=204 Identities=6% Similarity=-0.045 Sum_probs=121.4
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEe-cCCcEEEeccCCCCCC
Q 000177 1511 LLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
.+..++|++++..|+ +-...+.|.+++...+.....+...-.....+ ++++++ .++++. ..+.|.++++.. .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i--a~d~~~~~lyv~d~~~~~I~~~~~~g---~ 111 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI--ALDHLGRTIFWTDSQLDRIEVAKMDG---T 111 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE--EEETTTTEEEEEETTTTEEEEEETTS---C
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEE--EEEecCCeEEEEECCCCEEEEEEcCC---C
Confidence 467899999766555 44567899999997665443333333466788 788865 455553 477899999864 2
Q ss_pred cceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-e
Q 000177 1588 PMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-W 1661 (1922)
Q Consensus 1588 ~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-S 1661 (1922)
....+ ...+.++++|++.+|+.+......+.|..+++.. .....+... .......++|+|++..|. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~------~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQD------NLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECT------TCSCEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEEC------CCCCCcEEEEcCCCCEEEEE
Confidence 22222 2237899999766555442211246888888764 322323200 112223499999876554 4
Q ss_pred cc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC---ceeEEEccCC
Q 000177 1662 NG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD---QTTITFNARG 1727 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~---~~sVaFSPdG 1727 (1922)
.. ..+|+........+.+...+..+++. +..|..+. .++|..+++.+.+++... .+.+++.|++
T Consensus 185 d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 185 DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred ECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 33 56666543333333333334456554 44444443 367888899999887433 3788888887
Q ss_pred C
Q 000177 1728 D 1728 (1922)
Q Consensus 1728 ~ 1728 (1922)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.015 Score=65.50 Aligned_cols=232 Identities=8% Similarity=0.030 Sum_probs=129.4
Q ss_pred CEEEEEeCCCcEEEEECCCCCce-----eeeccCCCCeeEEEeeecCCCc-EEEEe-cCCcEEEeccCCCCCCcceEe--
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPL-----ESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQDVHLWNASSIAGGPMHSF-- 1592 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l-----~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgtVkLWDl~t~~gk~l~tf-- 1592 (1922)
.+|+.+.. +.|+.++++..... ..+......+..+ +|++++. ++++. ..+.|..+++.. ......+
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi--~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGL--AFDCVDKVVYWTDISEPSIGRASLHG--GEPTTIIRQ 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEE--EEETTTTEEEEEETTTTEEEEEESSS--CCCEEEECT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEE--EEecCCCEEEEEECCCCEEEEEecCC--CCcEEEEEC
Confidence 44555553 47888888654321 1122122345677 7888654 44453 478999999875 3322222
Q ss_pred --ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-CcceEEEEcCCC-CeEeec-----c
Q 000177 1593 --EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-HAYSQIHFSPSD-TMLLWN-----G 1663 (1922)
Q Consensus 1593 --~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-h~~~vVaFSPdG-~lLaSg-----g 1663 (1922)
.....++++|++..++.+ +...+.|.++|+........+. .+ ....-++++|++ .++++. +
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~--d~~~~~I~~~~~~g~~~~~~~~--------~~~~~P~~i~vd~~~g~lyv~~~~~~~~ 146 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWT--DSQLDRIEVAKMDGTQRRVLFD--------TGLVNPRGIVTDPVRGNLYWTDWNRDNP 146 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEE--ETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred CCCCccEEEEEecCCeEEEE--ECCCCEEEEEEcCCCCEEEEEE--------CCCCCccEEEEeeCCCEEEEEECCCCCc
Confidence 123789999976655554 2556889999987533222221 11 222348999965 444443 2
Q ss_pred EE--EEcCCCcceeeec--cCCCceEEEEecCCCEEEEEe----E--EEecCCCeEEEEEcCCCc-eeEEEccCCCEEEE
Q 000177 1664 IL--WDRRNSVPVHRFD--QFTDHGGGGFHPAGNEVIINS----E--VWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYA 1732 (1922)
Q Consensus 1664 rL--WDlrtgk~I~kf~--gh~~~VsVaFSPdG~~LASGS----e--IWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaS 1732 (1922)
.| +++. +.....+. ....+..++|+|++.+|..+. + ++|+.+......+.+... ..+++ ++..|+.
T Consensus 147 ~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyv 223 (267)
T 1npe_A 147 KIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYY 223 (267)
T ss_dssp EEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEE
T ss_pred EEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEE
Confidence 43 4443 33333332 222344899999887776655 2 566654333333332222 45554 3566666
Q ss_pred EEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC--ceEEEEEcCCCce
Q 000177 1733 ILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR--CVLDFATERTDSF 1789 (1922)
Q Consensus 1733 gs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr--~I~dLa~SPdds~ 1789 (1922)
+.. ....+..++..+.+.+.++.... ..+.+++.|+++.
T Consensus 224 a~~------------------~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~~ 264 (267)
T 1npe_A 224 TDW------------------KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQCP 264 (267)
T ss_dssp EET------------------TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC-
T ss_pred EEC------------------CCCeEEEEeCCCCCceEEEccccccccceeeecCccCC
Confidence 521 12345677777777777776543 4677778777763
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0012 Score=85.95 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=130.2
Q ss_pred CCCcEEEEECCCCCceeeecc--CC----------------------------CCe-eEEEeeecCCCcEEEEec-CC--
Q 000177 1529 HTKELKIFDSNSSSPLESCTS--HQ----------------------------APV-TLVQSHLSGETQLLLSSS-SQ-- 1574 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~g--Hs----------------------------s~V-tsLq~afSpDG~lLaSSs-Dg-- 1574 (1922)
.+|.|..||..+|+.+-.+.. +. ..+ ..+ ++++++.+|+.+. ++
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~--~~d~~~~~vy~~~~~g~~ 258 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSF--AYDPELNLLYIGVGNGSL 258 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCE--EEETTTTEEEEECCCEES
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccce--eEcCCCCEEEEeCCCCCc
Confidence 378999999999998766631 10 011 134 6778777777653 44
Q ss_pred -----------------cEEEeccCCCCCCcceEecc--c--ee---------EEEcCCCC---EEEEeecCCCCCeEEE
Q 000177 1575 -----------------DVHLWNASSIAGGPMHSFEG--C--KA---------ARFSNSGN---LFAALPTETSDRGILL 1621 (1922)
Q Consensus 1575 -----------------tVkLWDl~t~~gk~l~tf~g--h--~s---------VaFSPDG~---~LaSgS~~S~DgtIrI 1621 (1922)
.|..||..+ ++.+..++. + +. .....+|+ .++.+ +.+|.+++
T Consensus 259 w~~~~~~~~~gd~~y~~~v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~---~~~G~l~~ 333 (689)
T 1yiq_A 259 WDPKWRSQAKGDNLFLSSIVAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA---PKNGFFYV 333 (689)
T ss_dssp SCHHHHHTTCSCCTTTTEEEEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC---CTTSEEEE
T ss_pred cccCCCCCCCCCceeeeeEEEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE---CCCCeEEE
Confidence 389999998 888777653 1 11 11112454 56676 78999999
Q ss_pred EECCCCceeeeecccc--cc-----------------------------ccCCCCcc-eEEEEcCCCCeEeec-------
Q 000177 1622 YDIQTYQLEAKLSDTS--VN-----------------------------LTGRGHAY-SQIHFSPSDTMLLWN------- 1662 (1922)
Q Consensus 1622 WDlrTgk~i~tL~d~s--~~-----------------------------~~~~gh~~-~vVaFSPdG~lLaSg------- 1662 (1922)
+|..+|+.+....-.. +. ....+... ..++|+|+..+++..
T Consensus 334 lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~ 413 (689)
T 1yiq_A 334 IDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAY 413 (689)
T ss_dssp EETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEE
T ss_pred EECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccccee
Confidence 9999999874432100 00 00001111 126788877665531
Q ss_pred -----------------------------------------c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1663 -----------------------------------------G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1663 -----------------------------------------g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+ ..||+.+|+.+.++..+.......+...|..|++++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt 493 (689)
T 1yiq_A 414 YEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS 493 (689)
T ss_dssp EECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC
T ss_pred eeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC
Confidence 3 679999999988887665444556777788888887
Q ss_pred -----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1700 -----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 -----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
+.||.+||+.+.++..... .-+.|..+|+..++.
T Consensus 494 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 494 ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTF 535 (689)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEE
Confidence 5999999999988874322 678899999866554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.011 Score=69.68 Aligned_cols=200 Identities=12% Similarity=0.036 Sum_probs=113.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccC---------CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcce
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSH---------QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH---------ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~ 1590 (1922)
++..|++++.++.|..||..+|+.+-.+... ...+.+. ....++.+++.+.++.|..+|..+ ++.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~~g~l~a~d~~t--G~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG--VTVSGGHVYIGSEKAQVYALNTSD--GTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE--EEEETTEEEEEETTSEEEEEETTT--CCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC--ceEeCCEEEEEcCCCEEEEEECCC--CCEEE
Confidence 3678888999999999999999987666432 2223222 122356666667799999999988 77766
Q ss_pred EeccceeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec--c--E
Q 000177 1591 SFEGCKAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN--G--I 1664 (1922)
Q Consensus 1591 tf~gh~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg--g--r 1664 (1922)
++.....+.-.| .+..++.+ +.++.|..||..+|+.+..+..............+.+. ++.+++.. + .
T Consensus 128 ~~~~~~~~~~~p~~~~~~v~v~---~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 128 QTKVAGEALSRPVVSDGLVLIH---TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVS 201 (376)
T ss_dssp EEECSSCCCSCCEEETTEEEEE---CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEE
T ss_pred EEeCCCceEcCCEEECCEEEEE---cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEE
Confidence 654321111111 24466666 67899999999999988776521111000111122221 34444322 1 7
Q ss_pred EEEcCCCcceeeeccCCCc----------e--EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCceeEEEccCC
Q 000177 1665 LWDRRNSVPVHRFDQFTDH----------G--GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQTTITFNARG 1727 (1922)
Q Consensus 1665 LWDlrtgk~I~kf~gh~~~----------V--sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~~sVaFSPdG 1727 (1922)
.+|..+|+.+.++...... + .... .+..++.++ ..+|..+++.+..........+.. ++
T Consensus 202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~ 277 (376)
T 3q7m_A 202 AVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DG 277 (376)
T ss_dssp EEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ET
T ss_pred EEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--EC
Confidence 7888888887766532210 1 1111 133444443 367888888776665322233333 34
Q ss_pred CEEEEE
Q 000177 1728 DVIYAI 1733 (1922)
Q Consensus 1728 ~~LaSg 1733 (1922)
..|+.+
T Consensus 278 ~~l~~~ 283 (376)
T 3q7m_A 278 NRIYLV 283 (376)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 555554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.022 Score=66.09 Aligned_cols=173 Identities=9% Similarity=0.057 Sum_probs=107.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc--------------------CCCCeeEEEeeecC-CCcEEEE
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS--------------------HQAPVTLVQSHLSG-ETQLLLS 1570 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g--------------------Hss~VtsLq~afSp-DG~lLaS 1570 (1922)
..+++|+++|++++++..++.|..|+..++.. ..+.. ....+..| ++.+ +++++++
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi--~~~~~~g~l~v~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDI--SYNLQNNQLYIV 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEE--EEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceE--EEcCCCCcEEEE
Confidence 45788999999888999999999999876543 22211 01246788 7887 7888877
Q ss_pred ecCCcEEEeccCCCCCCcceEe---------ccceeEEEcC-CCCEEEEeecC--------------CCCCeEEEEECCC
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSF---------EGCKAARFSN-SGNLFAALPTE--------------TSDRGILLYDIQT 1626 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf---------~gh~sVaFSP-DG~~LaSgS~~--------------S~DgtIrIWDlrT 1626 (1922)
...+.|..+|..+ +. +..+ ...+.+++.+ +|+.+++.... ..++.|..||..+
T Consensus 98 d~~~~i~~~d~~~--g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 98 DCYYHLSVVGSEG--GH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp ETTTEEEEECTTC--EE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred ECCCCEEEEeCCC--CE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 6556688888764 22 2222 1236799999 99877764210 1246788999877
Q ss_pred CceeeeeccccccccCCCCcceEEEEcCCCCeE-eecc-----EEEEcCCCc--ceeeeccCCCceEEEEecCCCEEEEE
Q 000177 1627 YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML-LWNG-----ILWDRRNSV--PVHRFDQFTDHGGGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1627 gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL-aSgg-----rLWDlrtgk--~I~kf~gh~~~VsVaFSPdG~~LASG 1698 (1922)
++...... .....+-++|+|+|++| ++.. ..||+.... ....+.....+-.+++.++|++.++.
T Consensus 175 ~~~~~~~~--------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 175 KETTLLLK--------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGHFWVSS 246 (322)
T ss_dssp TEEEEEEE--------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSCEEEEE
T ss_pred CEEEEecc--------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCCEEEEe
Confidence 76433222 01122348999999854 4433 566666421 12222222223488999999866654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0098 Score=67.92 Aligned_cols=200 Identities=10% Similarity=0.049 Sum_probs=119.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
..+.++.+.++|. |..|+.+ |..||. +++.+..+..+....... ... ++.+.+.+.++.|..||.. ++.+
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~--~~~-~~~l~v~t~~~~l~~~d~~---g~~~ 129 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF--TIF-EDILYVTSMDGHLYAINTD---GTEK 129 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE--EEE-TTEEEEECTTSEEEEECTT---SCEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc--eEE-CCEEEEEecCCEEEEEcCC---CCEE
Confidence 4456777777765 5555555 888886 666655554333333333 223 6666666678899999976 3344
Q ss_pred eEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1590 HSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1590 ~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
..+.. ..++.+.+++..++ + +.++.|..||.. ++....+.. .......+.+.++|.+++..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~l~v-g---t~~~~l~~~d~~-g~~~~~~~~-------~~~~~~~~~~d~~g~l~v~t~~l 197 (330)
T 3hxj_A 130 WRFKTKKAIYATPIVSEDGTIYV-G---SNDNYLYAINPD-GTEKWRFKT-------NDAITSAASIGKDGTIYFGSDKV 197 (330)
T ss_dssp EEEECSSCCCSCCEECTTSCEEE-E---CTTSEEEEECTT-SCEEEEEEC-------SSCCCSCCEECTTCCEEEESSSE
T ss_pred EEEcCCCceeeeeEEcCCCEEEE-E---cCCCEEEEECCC-CCEeEEEec-------CCCceeeeEEcCCCEEEEEeCEE
Confidence 44332 24566666777555 4 567889999998 777665541 112233366777887766445
Q ss_pred EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe--E--EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1664 ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS--E--VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1664 rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS--e--IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
..|| .+++.+.++......+ ++.+.++|...+... . .+|. +++.+..+..... ..+.+.++|.+.++.
T Consensus 198 ~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t 272 (330)
T 3hxj_A 198 YAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS 272 (330)
T ss_dssp EEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC
T ss_pred EEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec
Confidence 7788 6777777666554445 788888887666543 3 4453 4566655553322 456666666555443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0065 Score=70.67 Aligned_cols=170 Identities=12% Similarity=0.127 Sum_probs=113.4
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcC
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRR 1669 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlr 1669 (1922)
..+.|+|++..+++. ....++.|+++|+.+++.+.++.-+ ......-+++. +..|.... .++|..
T Consensus 24 ~Gl~~~~dg~Lyvst-g~~~~s~v~~iD~~tg~v~~~i~l~------~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 24 QGLVYAENDTLFEST-GLYGRSSVRQVALQTGKVENIHKMD------DSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp EEEEECSTTEEEEEE-CSTTTCEEEEEETTTCCEEEEEECC------TTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred ccEEEeCCCeEEEEC-CCCCCCEEEEEECCCCCEEEEEecC------CCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 578999987655554 1123689999999999999887511 11111224554 44443222 899999
Q ss_pred CCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC-------ceeEEEccCCCEEEEEEccC
Q 000177 1670 NSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD-------QTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1670 tgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~-------~~sVaFSPdG~~LaSgs~~d 1737 (1922)
+.+.+.++... ......++++|+.++.+. .++|..+++.+.+++-.. .+.+.|. +| .+++...
T Consensus 95 t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~-- 169 (266)
T 2iwa_A 95 TLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIW-- 169 (266)
T ss_dssp TTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET--
T ss_pred CCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecC--
Confidence 99999988644 222334566777665544 388999999998887321 2577888 66 5665421
Q ss_pred chhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--------------CceEEEEEcCCCceEEEEec
Q 000177 1738 LEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--------------RCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1738 ~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--------------r~I~dLa~SPdds~LAVVe~ 1795 (1922)
....+.++|..+.+.+.++++. ...+.++++|++..+-|...
T Consensus 170 ----------------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 170 ----------------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp ----------------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred ----------------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 2346788898888888888763 24589999999988877753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.064 Score=62.04 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=121.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--CC-cEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--SQ-DVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--Dg-tVkLWDl~t~~g 1586 (1922)
.....++|+++|+++++-..++.|..||... +....+. .......| +++++|+++++.. ++ .|..+|..+ +
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gi--a~~~dG~l~vad~~~~~~~v~~~d~~~--g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGL--AFTSNGDLVATGWNADSIPVVSLVKSD--G 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEE--EECTTSCEEEEEECTTSCEEEEEECTT--S
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeE--EEcCCCcEEEEeccCCcceEEEEcCCC--C
Confidence 3577899999999777777889999999864 3333332 23457788 8899999887753 22 466666555 4
Q ss_pred Ccce--Eecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeecccccc--ccCCCC-cceEEEEcCCCC
Q 000177 1587 GPMH--SFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVN--LTGRGH-AYSQIHFSPSDT 1657 (1922)
Q Consensus 1587 k~l~--tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~--~~~~gh-~~~vVaFSPdG~ 1657 (1922)
+... .+.. ...+++.+++..+++- ...+.|.++|..+++. +.... .... ....+. ..+-+ +|+++
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d---~~~g~i~~~d~~~~~~~v~~~~-~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLSDTQYLTAD---SYRGAIWLIDVVQPSGSIWLEH-PMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEE---TTTTEEEEEETTTTEEEEEEEC-GGGSCSSTTCCSCSEEEE--EEETT
T ss_pred eEEEEEeCCCccccCcccccCCCcEEEEE---CCCCeEEEEeCCCCcEeEEEEC-CccccccccCCCCcCCCc--CcCCC
Confidence 4321 1111 1344444555444443 4578899999876532 11111 0000 000011 11124 88886
Q ss_pred eEe-ecc-----EEEEcCC-Ccc--eeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEE--EEcC--CCce
Q 000177 1658 MLL-WNG-----ILWDRRN-SVP--VHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLR--SVPS--LDQT 1719 (1922)
Q Consensus 1658 lLa-Sgg-----rLWDlrt-gk~--I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~--tl~g--H~~~ 1719 (1922)
+|. +.. ..||+.. ++. ...+......-.+++.++|++.++.. .+||.. ++... .+.. ...+
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGST 258 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence 554 433 5667653 321 22232222233789999998766653 256654 55532 3332 2238
Q ss_pred eEEEc---cCCCEEEEEEc
Q 000177 1720 TITFN---ARGDVIYAILR 1735 (1922)
Q Consensus 1720 sVaFS---PdG~~LaSgs~ 1735 (1922)
+++|. |++..||.+..
T Consensus 259 ~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEECCSTTTTTEEEEEEC
T ss_pred EEEEecccCCCCEEEEECC
Confidence 99999 89888887743
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.046 Score=64.40 Aligned_cols=218 Identities=9% Similarity=0.002 Sum_probs=125.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC---- 1595 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh---- 1595 (1922)
++..|+.++.++.|..||..+|+.+..+..+....... .. .++.+++.+.++.|..+|..+ ++.+..+...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p--~~-~~~~v~v~~~~g~l~~~d~~t--G~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRP--VV-SDGLVLIHTSNGQLQALNEAD--GAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCC--EE-ETTEEEEECTTSEEEEEETTT--CCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCC--EE-ECCEEEEEcCCCeEEEEECCC--CcEEEEEeCCCCce
Confidence 46688889999999999999999877665433222111 11 256666667799999999987 7776665432
Q ss_pred -----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC------CCCcceEEEEcCCCCeEeec--
Q 000177 1596 -----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG------RGHAYSQIHFSPSDTMLLWN-- 1662 (1922)
Q Consensus 1596 -----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~------~gh~~~vVaFSPdG~lLaSg-- 1662 (1922)
..... .+..++.+ +.++.+..||..+|+.+............ .....+. + .++.+++..
T Consensus 177 ~~~~~~~~~~--~~~~v~~g---~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~-~~~~v~~~~~~ 248 (376)
T 3q7m_A 177 SLRGESAPTT--AFGAAVVG---GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--V-VNGVVFALAYN 248 (376)
T ss_dssp --CCCCCCEE--ETTEEEEC---CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE--E-ETTEEEEECTT
T ss_pred eecCCCCcEE--ECCEEEEE---cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE--E-ECCEEEEEecC
Confidence 11122 24566666 67899999999999988776511100000 0001111 1 134444432
Q ss_pred c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEE
Q 000177 1663 G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYA 1732 (1922)
Q Consensus 1663 g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaS 1732 (1922)
+ ..+|..+|+.+.++... ....+... +..|..++ ..||..+++.+........ ..... .+..|+.
T Consensus 249 g~l~~~d~~tG~~~w~~~~~-~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v 323 (376)
T 3q7m_A 249 GNLTALDLRSGQIMWKRELG-SVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV 323 (376)
T ss_dssp SCEEEEETTTCCEEEEECCC-CEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE
T ss_pred cEEEEEECCCCcEEeeccCC-CCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE
Confidence 2 78888888887666422 11233332 44444443 3788889988777652211 22222 2345555
Q ss_pred EEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1733 ILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1733 gs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
+. ....+..+|..+.+.+.....
T Consensus 324 ~~-------------------~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 324 GD-------------------SEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EC-------------------TTSEEEEEETTTCCEEEEEEC
T ss_pred Ee-------------------CCCeEEEEECCCCcEEEEEec
Confidence 52 123456667666666655544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.011 Score=67.40 Aligned_cols=191 Identities=10% Similarity=0.057 Sum_probs=123.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----ce
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CK 1596 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~ 1596 (1922)
+..|..|+.++.|..||.. ++....+..+...+.++ ...+++.+++.+.++.|..||.. ++.+..+.. ..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~--~~~~~g~l~vgt~~~~l~~~d~~---g~~~~~~~~~~~~~~ 180 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP--IVSEDGTIYVGSNDNYLYAINPD---GTEKWRFKTNDAITS 180 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC--EECTTSCEEEECTTSEEEEECTT---SCEEEEEECSSCCCS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee--EEcCCCEEEEEcCCCEEEEECCC---CCEeEEEecCCCcee
Confidence 5578889999999999988 77776666555666666 66778888887778999999986 344444432 25
Q ss_pred eEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec--c--EEEEcCCCc
Q 000177 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN--G--ILWDRRNSV 1672 (1922)
Q Consensus 1597 sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg--g--rLWDlrtgk 1672 (1922)
++.+.+++..+++ + +.|..|| .+++....+.. .......+.+.++|.+.+.. + ..+| .+++
T Consensus 181 ~~~~d~~g~l~v~----t--~~l~~~d-~~g~~~~~~~~-------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~ 245 (330)
T 3hxj_A 181 AASIGKDGTIYFG----S--DKVYAIN-PDGTEKWNFYA-------GYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGT 245 (330)
T ss_dssp CCEECTTCCEEEE----S--SSEEEEC-TTSCEEEEECC-------SSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSC
T ss_pred eeEEcCCCEEEEE----e--CEEEEEC-CCCcEEEEEcc-------CCcceeceEECCCCeEEEEcCCCeEEEEC-CCCC
Confidence 5667677775544 4 6699999 77776665541 11223447778888777753 2 4555 3566
Q ss_pred ceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1673 PVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1673 ~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.+..+....... ++.+.++|...+... ..+|. +++.+..+..... .++...++|.+.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 246 EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGT 312 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEEC
T ss_pred EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEc
Confidence 666665544433 566666776554433 25664 5666665543222 577777888766654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.02 Score=75.12 Aligned_cols=112 Identities=6% Similarity=0.036 Sum_probs=73.8
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-Ccee-eeccCCCCeeEEEeeecCCCcEEEE-ecC-----CcE
Q 000177 1511 LLTCITFL-GDSSHIAVGSH-TK----ELKIFDSNSS-SPLE-SCTSHQAPVTLVQSHLSGETQLLLS-SSS-----QDV 1576 (1922)
Q Consensus 1511 ~Vt~LaFS-PDG~lLASGS~-DG----tIkIWDl~tg-k~l~-tL~gHss~VtsLq~afSpDG~lLaS-SsD-----gtV 1576 (1922)
.+...+|| |||++|+.+.. +| +|+++|+.++ +.+. .+.. ....+ .|+|||+.|+. ..| ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~--~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEI--VWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCC--EECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeE--EEecCCCEEEEEEECCCCCCCEE
Confidence 57889999 99998875543 23 5999999998 6322 1211 12345 78999987766 333 257
Q ss_pred EEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1577 HLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
++|++.+........+.. ...+.|+|||++|+..+.......|.++|+.++
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 888886521111223221 256789999998887654445677899999876
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.081 Score=68.66 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=144.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCC----CCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCCCcce
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQ----APVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHs----s~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~gk~l~ 1590 (1922)
+..|+.++.|+.|..+|..+|+.+-++.... ..+.+- ... .++.+++.+. ++.|..||..+ ++.+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~-P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~t--G~~~W 192 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGA-PRV-VKGKVIIGNGGAEYGVRGFVSAYDADT--GKLAW 192 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSC-CEE-ETTEEEECCBCTTTCCBCEEEEEETTT--CCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCC-CEE-ECCEEEEeCCCCCcCCCCEEEEEECCC--CcEEE
Confidence 5678889999999999999999887764321 111110 001 1555555432 47899999988 77776
Q ss_pred Eeccc-----------------------------------eeEEEcCCCCEEEEeecCCCCC------------------
Q 000177 1591 SFEGC-----------------------------------KAARFSNSGNLFAALPTETSDR------------------ 1617 (1922)
Q Consensus 1591 tf~gh-----------------------------------~sVaFSPDG~~LaSgS~~S~Dg------------------ 1617 (1922)
++... ..+++.|+...++.+ +.++
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~---~~~g~~w~~~~~~~~~gd~l~~ 269 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVG---TGNGSPWNREVRSPGGGDNLYL 269 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEE---CCCEESSCHHHHSTTCCCCTTT
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEe---CCCCCccccCCCCCCCCCceee
Confidence 65310 135788877777777 3333
Q ss_pred -eEEEEECCCCceeeeeccccccccCCCCcce-E-EEEcCCCC---eEeecc-----EEEEcCCCcceeeeccCC-----
Q 000177 1618 -GILLYDIQTYQLEAKLSDTSVNLTGRGHAYS-Q-IHFSPSDT---MLLWNG-----ILWDRRNSVPVHRFDQFT----- 1681 (1922)
Q Consensus 1618 -tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~-v-VaFSPdG~---lLaSgg-----rLWDlrtgk~I~kf~gh~----- 1681 (1922)
.|..+|..||+.+..+.......-....... + ..+..+|+ .++.++ +++|..+|+.+..+....
T Consensus 270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (668)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc
Confidence 4999999999998877511000000000011 1 22333554 344443 778888887763322110
Q ss_pred --------------------------------CceEEEEecCCCEEEEE-------------------------------
Q 000177 1682 --------------------------------DHGGGGFHPAGNEVIIN------------------------------- 1698 (1922)
Q Consensus 1682 --------------------------------~~VsVaFSPdG~~LASG------------------------------- 1698 (1922)
++-.++|+|+...+...
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 01136778876655431
Q ss_pred --------e--EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1699 --------S--EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1699 --------S--eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
+ ..||+.|++.+-+++.+.. +...+...|.+++.+. .+..++.+|..+.+
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~-------------------~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT-------------------AAGQMHAYSADKGE 490 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-------------------TTSEEEEEETTTCC
T ss_pred CCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC-------------------CcccchhhhhhcCh
Confidence 2 2578888888776664332 3344555667777762 23467888888888
Q ss_pred eeeeeccCCceE--EEEEcCCCc-eEEEEe
Q 000177 1768 DIATIPVDRCVL--DFATERTDS-FVGLIT 1794 (1922)
Q Consensus 1768 ~IaTidvkr~I~--dLa~SPdds-~LAVVe 1794 (1922)
.+..+.....+. -+.+..+|+ ++++..
T Consensus 491 ~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 491 ALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred hheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 887776654332 223344565 555544
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.035 Score=71.35 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=87.8
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhhccCCCcccc--cccceeee
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTF--FGLSSCLF 637 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~vPR~s~a~--tgvS~Cly 637 (1922)
.+...+++..++.+|.... ...+...+++.|..|..+......+++.|+++.|+.+=+..... ..+..+|.
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~-------~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYT-------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCC-------CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHcCC-------hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567788999888886421 11345667777878878888889999999999999886654211 12222333
Q ss_pred hhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hcchhHHHHHhhhcccHHHHHHHHh
Q 000177 638 TIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAA-AFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 638 ylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
.|+....- ...+..++..-+.||.+.+...|.+|+.-++. +..-+...+.+=..+|+..|+.+|.
T Consensus 250 nL~~~~~~--------~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 250 NLSDAATK--------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp HHGGGCTT--------CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhcchh--------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH
Confidence 33332211 12334677778888998888888888776643 2222333444445678999988886
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.027 Score=69.33 Aligned_cols=433 Identities=17% Similarity=0.182 Sum_probs=214.4
Q ss_pred HHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhh
Q 000177 542 KYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 542 ~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL 620 (1922)
+..+++|.-|....+.-..+...+++..++.+|.. .+..+...+++.|..|..+ ...-..+++.|+++.|+
T Consensus 78 ~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 149 (529)
T 1jdh_A 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS--------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149 (529)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH
Confidence 34444444444333444455677888888887753 2334678899999998877 45556778999999999
Q ss_pred ccCCCccccc--ccceeeehhcch-hhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHh--hhhcchhHHHHH
Q 000177 621 AVPRNNQTFF--GLSSCLFTIGSL-QGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFF--AAAFVFRAIIDA 695 (1922)
Q Consensus 621 ~vPR~s~a~t--gvS~Clyylay~-~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF--~~sf~Fr~il~~ 695 (1922)
++=+.+..-. ....||..|++. ++.-+.++.. . .+..-+.+|..+.+..+..++... .++. .+...+.
T Consensus 150 ~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~--~----~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 222 (529)
T 1jdh_A 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS--G----GPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPA 222 (529)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--T----HHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--C----CHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHH
Confidence 8776542111 112255555552 3444444433 2 344445566655555444433321 2221 2222333
Q ss_pred hhhcccHHHHHHHHhhhhccccccCCCccccCCccCcCCCCCChhhhchhhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000177 696 FDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPN 775 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~e~~~~s~rQ~~~h~c~aLR~Yf~aHL~~~v~~~~~~ 775 (1922)
+=..+++..|+.++. + .+ ..+.+++|.+|+...+. .
T Consensus 223 ~~~~g~~~~L~~ll~------------------------~-~~--------~~~~~~a~~~L~~l~~~-----------~ 258 (529)
T 1jdh_A 223 IVEAGGMQALGLHLT------------------------D-PS--------QRLVQNCLWTLRNLSDA-----------A 258 (529)
T ss_dssp HHHTTHHHHHHTTTT------------------------S-SC--------HHHHHHHHHHHHHHHTT-----------C
T ss_pred HHHCCCHHHHHHHHh------------------------C-CC--------hHHHHHHHHHHHHHhcC-----------C
Confidence 333455555554442 0 01 13556667676653210 0
Q ss_pred CCCCCCCCCCCCcCcccccccCCHHHHHHHHHHhhc-ccccC-------cccccCcchHHHHHHhcCChHHHHhhhcCCC
Q 000177 776 KSNRSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQK-DRKLG-------PALVRTRWPAVDRFLSLNGHITLLELCQAPP 847 (1922)
Q Consensus 776 ~~~~s~~~~~~~~~~~~k~~~~s~e~~~~~~~~l~~-~r~~~-------~~~~~~~W~pvd~f~~l~g~~~lL~l~~~~~ 847 (1922)
.... .....+..++..|.. +.+.- .......-.....+...+++..|++++....
T Consensus 259 -~~~~----------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 259 -TKQE----------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp -TTCS----------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred -hhhH----------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 0000 001222222222210 00000 0000111234567788889999998887422
Q ss_pred chhhHHHHHHHHhccceEEEee-cc---hhhhhhhccccCCccchHHHHhhhhccCCCCCccchhHHHHHhhhcccCCCc
Q 000177 848 VERYLHDLLQYALGVLHIVTLV-PN---SRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPS 923 (1922)
Q Consensus 848 ~~r~~~e~v~~aL~vL~i~tvv-P~---~r~~l~~~~~s~~~~Gi~ilL~~a~~g~~~~D~ev~~~AL~Vl~ncVc~P~~ 923 (1922)
. ..++...|+.+|+-++.. |. .|..+.+ ..|+..|+.... .. .++++++.|+.+|.|+...|..
T Consensus 322 ~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~------~~~i~~L~~lL~-~~--~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 322 D---REDITEPAICALRHLTSRHQEAEMAQNAVRL------HYGLPVVVKLLH-PP--SHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp T---CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH------TTCHHHHHHTTS-TT--CCHHHHHHHHHHHHHHTTSGGG
T ss_pred C---HHHHHHHHHHHHHHHHcCCchHHHHHHHHHH------cCChhHHHHHhc-cc--cchHHHHHHHHHHHHHhcChhh
Confidence 1 135556666666655332 22 2333322 236777877765 21 2468999999999999876642
Q ss_pred CCCCCCccccCccccccccCCCCCCCcccccccccccccccccCcccccccccccccccccCCCcccccccCCCCCCCCC
Q 000177 924 ISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDRGSSANTQLACSTSQTPVPT 1003 (1922)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1922)
+...... | ...-..+ ...... ..+++...- +- +|....
T Consensus 390 ---~~~~~~~-----------~---------~i~~L~~---ll~~~~--~~v~~~a~~---~l-~n~~~~---------- 427 (529)
T 1jdh_A 390 ---HAPLREQ-----------G---------AIPRLVQ---LLVRAH--QDTQRRTSM---GG-TQQQFV---------- 427 (529)
T ss_dssp ---HHHHHHT-----------T---------HHHHHHH---HHHHHH--HHHC---------------CB----------
T ss_pred ---hHHHHHc-----------C---------CHHHHHH---HHHHHh--HHHHHHHhc---cc-Cchhhh----------
Confidence 1100000 0 0000000 000000 000000000 00 000000
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHhhccccCCCCchhhHHHHHHHHHHhCccccHH
Q 000177 1004 PTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDT 1083 (1922)
Q Consensus 1004 ~~~~~~~d~~~~~~~~~~~~g~~~~~e~~~~~~~~~VR~nnGIkvLL~LL~~k~~~Pit~aD~iRaLAcraL~GLaR~~~ 1083 (1922)
.+...+ .+-. +.+..+..-.. ....+..++.+++|..|+.||.-. . .-+|..|+.+|.-|+.++.
T Consensus 428 --~~~~~~-~i~~---~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~----~---~~v~~~a~~~l~~l~~~~~ 492 (529)
T 1jdh_A 428 --EGVRME-EIVE---GCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSP----I---ENIQRVAAGVLCELAQDKE 492 (529)
T ss_dssp --TTBCHH-HHHH---HHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCS----C---HHHHHHHHHHHHHHTTSHH
T ss_pred --ccccHH-HHHH---HHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCC----c---hHHHHHHHHHHHHHhcCHH
Confidence 000000 0000 00000000000 112345688899999999999832 2 3589999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHhccCCCCCCccchhHHHHHHHHHHHHHHHH
Q 000177 1084 IAHILTKLQVGKKLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIV 1131 (1922)
Q Consensus 1084 vrqIlskLpl~~~lq~Lmr~p~lq~~~~e~~~f~~~f~~~A~eLie~v 1131 (1922)
.++.|.+...-..|..|+.++ +. +.+++|...|+++
T Consensus 493 ~~~~i~~~~~~~~L~~l~~~~--------~~----~v~~~a~~aL~~l 528 (529)
T 1jdh_A 493 AAEAIEAEGATAPLTELLHSR--------NE----GVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCS--------SH----HHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHhcCC--------CH----HHHHHHHHHHHhc
Confidence 999998888777888888776 22 2346777777765
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.044 Score=70.38 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=83.7
Q ss_pred HHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchhhhc
Q 000177 543 YCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQKLLA 621 (1922)
Q Consensus 543 ~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~LL~ 621 (1922)
..+.+|.-|....+....+...+++..++.+|.. .+..+...|++.|..|..+. .....+++.|+++.|++
T Consensus 76 ~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~ 147 (644)
T 2z6h_A 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS--------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 147 (644)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC--------SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC--------CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH
Confidence 3444444444444444456677888888887753 23456788999999998873 55566789999999988
Q ss_pred cCCCcccc-c-ccceeeehhcc-hhhHHHHhhcCChhhHHHHHHHHHHHHhcCC-hHHhhhHhhHhhhhcchhHHHHHhh
Q 000177 622 VPRNNQTF-F-GLSSCLFTIGS-LQGIMERVCALPTDVVHQLVELAIQLLECTQ-DQARKNAALFFAAAFVFRAIIDAFD 697 (1922)
Q Consensus 622 vPR~s~a~-t-gvS~Clyylay-~~~aMERvC~lp~~vl~~lV~yaLwLLecsh-ds~r~~A~mFF~~sf~Fr~il~~FD 697 (1922)
+=+....- . ....||.-|++ +.+.-+.++.. ..|..-+.||..+. +..+.+|+..+...-..+..-+.+=
T Consensus 148 lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~------g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~ 221 (644)
T 2z6h_A 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILAS------GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 221 (644)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc------CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 76654211 1 11225666665 44444444433 23444555665543 3444444433222112222233333
Q ss_pred hcccHHHHHHHH
Q 000177 698 AQDGLQKLLGLL 709 (1922)
Q Consensus 698 ~~dGLrkL~N~i 709 (1922)
..+++..|+.++
T Consensus 222 ~~g~l~~L~~ll 233 (644)
T 2z6h_A 222 EAGGMQALGLHL 233 (644)
T ss_dssp HTTHHHHHHTTT
T ss_pred HCCCHHHHHHHH
Confidence 345566555444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.029 Score=65.16 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=107.9
Q ss_pred cccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC
Q 000177 1486 RNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1486 g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD 1564 (1922)
+....+.+...+.+.++.+.-.. .+......++++.|+... .++.+.+||..+.+.+.++..-..+ +.+ ++|
T Consensus 63 g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~gl----t~d 135 (262)
T 3nol_A 63 GRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGL----THN 135 (262)
T ss_dssp TEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCE----EEC
T ss_pred CCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEE----ecC
Confidence 33455666667777777665422 233333333456665555 5889999999999999988643222 344 346
Q ss_pred CcEEEEec-CCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1565 TQLLLSSS-SQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1565 G~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
++.|+.++ +++|.++|..+ .+.+.++.- .+.+.|. +|+.++.. -.++.|.+.|..+++.+.++.
T Consensus 136 g~~L~~SdGs~~i~~iDp~T--~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~---w~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 136 DQYLIMSDGTPVLRFLDPES--LTPVRTITVTAHGEELPELNELEWV-DGEIFANV---WQTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp SSCEEECCSSSEEEEECTTT--CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE---TTSSEEEEECTTTCBEEEEEE
T ss_pred CCEEEEECCCCeEEEEcCCC--CeEEEEEEeccCCccccccceeEEE-CCEEEEEE---ccCCeEEEEECCCCcEEEEEE
Confidence 66665543 77899999987 666655432 1346776 67666555 567899999999999999887
Q ss_pred ccccccc-----CCCCcceEEEEcCCCCeEeeccEEE
Q 000177 1635 DTSVNLT-----GRGHAYSQIHFSPSDTMLLWNGILW 1666 (1922)
Q Consensus 1635 d~s~~~~-----~~gh~~~vVaFSPdG~lLaSggrLW 1666 (1922)
...+... ..+..-+-++|+|+++.|+..|+.|
T Consensus 210 ~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 210 LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred CCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 3322211 1122334499999988888777444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.057 Score=69.55 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=72.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCCcee--ee-ccCCCCeeEEEeeecCCCcEEEEec--CCcE
Q 000177 1514 CITFLG-DSSHIAVGSHTK-----------ELKIFDSNSSSPLE--SC-TSHQAPVTLVQSHLSGETQLLLSSS--SQDV 1576 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DG-----------tIkIWDl~tgk~l~--tL-~gHss~VtsLq~afSpDG~lLaSSs--DgtV 1576 (1922)
.+++.+ +|++++.|+.+. .+.+||..+++... .+ ..+.....++ ++..++++++.|. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~--~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI--SMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE--EECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccc--cCCCCCCEEEeCCCCCCce
Confidence 456677 889999988653 58899998876432 23 2233333445 5677999999864 5689
Q ss_pred EEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeec-CC--CCCeEEEEECCCCce
Q 000177 1577 HLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPT-ET--SDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~-~S--~DgtIrIWDlrTgk~ 1629 (1922)
.+||..+.....+..+.. ..++++.++++.++.|+. ++ .-..+.+||..+.+.
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 999987621111111111 245667789999998841 11 125689999987654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.13 Score=59.48 Aligned_cols=103 Identities=9% Similarity=0.178 Sum_probs=71.3
Q ss_pred EecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1503 TCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
.+.+-. +.+..++|+|++..| ++...++.|...|.. ++.++++. +-....-.| ++.+++.+++++ .++.+.++
T Consensus 21 ~l~g~~-~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGI--a~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGIT-NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETI--EYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCC-SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEE--EECSTTEEEEEETTTTEEEEE
T ss_pred ECCCcc-cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHe--EEeCCCEEEEEECCCCcEEEE
Confidence 345544 569999999976655 557788999999997 88887763 212456778 677899888876 47788888
Q ss_pred ccCCCCCC--cceEec----------cceeEEEcCCCCEEEEe
Q 000177 1580 NASSIAGG--PMHSFE----------GCKAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1580 Dl~t~~gk--~l~tf~----------gh~sVaFSPDG~~LaSg 1610 (1922)
++... +. .+.... +...++|+|.++.|+++
T Consensus 97 ~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va 138 (255)
T 3qqz_A 97 SLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF 138 (255)
T ss_dssp EECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE
T ss_pred EcCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEE
Confidence 87652 21 111111 12679999998777776
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.12 Score=66.00 Aligned_cols=110 Identities=14% Similarity=0.081 Sum_probs=70.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCC----CCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCCCcce
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQ----APVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHs----s~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~gk~l~ 1590 (1922)
+..|+.++.|+.|..+|..+|+.+-++.... ..+.+- ... .++.+++.+. ++.|..+|..+ ++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~-P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~t--G~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA-PFV-AKDTVLMGCSGAELGVRGAVNAFDLKT--GELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC-CEE-ETTEEEEECBCGGGTCCCEEEEEETTT--CCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC-CEE-ECCEEEEEecCCccCCCCEEEEEECCC--CcEEE
Confidence 5678889999999999999999876653211 112211 011 1566666543 78999999988 77766
Q ss_pred Eeccc------------------------------------------eeEEEcCCCCEEEEeecCC---------CC---
Q 000177 1591 SFEGC------------------------------------------KAARFSNSGNLFAALPTET---------SD--- 1616 (1922)
Q Consensus 1591 tf~gh------------------------------------------~sVaFSPDG~~LaSgS~~S---------~D--- 1616 (1922)
++... ..+++.+....++.+.... .|
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 55321 1245566555666552110 12
Q ss_pred -CeEEEEECCCCceeeeec
Q 000177 1617 -RGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1617 -gtIrIWDlrTgk~i~tL~ 1634 (1922)
+.|..+|..+|+.+..+.
T Consensus 271 ~~~v~Ald~~tG~~~W~~~ 289 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQ 289 (571)
T ss_dssp TTEEEEEETTTCCEEEEEE
T ss_pred EEEEEEEecCCCcEEEEec
Confidence 369999999999988775
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.067 Score=61.49 Aligned_cols=171 Identities=12% Similarity=0.075 Sum_probs=107.3
Q ss_pred CCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCCceeeeccCCCCeeEEEeee
Q 000177 1483 GVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAV-GSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1483 g~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLAS-GS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~af 1561 (1922)
|..+....+.+...+.+.++.+.-.. .+.......+++.|+. .-.++.+.+||..+.+.+.++..-..+ +.+ +
T Consensus 38 G~~g~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t- 111 (243)
T 3mbr_X 38 GETGRSSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--T- 111 (243)
T ss_dssp CCTTSCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--E-
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--e-
Confidence 34444556677777787777665332 2222222333454544 457889999999999999988643333 455 3
Q ss_pred cCCCcEEEEe-cCCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1562 SGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1562 SpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
++++.|..| .+++|.++|..+ .+.+.++.- .+.+.|. +|+.++.. -.+..|.+.|.++|+.+.
T Consensus 112 -~dg~~L~vSdgs~~l~~iDp~t--~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv---w~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 112 -SDDSHLYMSDGTAVIRKLDPDT--LQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV---WLTSRIARIDPASGKVVA 184 (243)
T ss_dssp -ECSSCEEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE---TTTTEEEEECTTTCBEEE
T ss_pred -eCCCEEEEECCCCeEEEEeCCC--CeEEEEEEEccCCcccccceeeEEe-CCEEEEEE---CCCCeEEEEECCCCCEEE
Confidence 355544443 478899999987 666655532 1345555 66666554 456789999999999999
Q ss_pred eecccccccc------CCCCcceEEEEcCCCCeEeeccEEE
Q 000177 1632 KLSDTSVNLT------GRGHAYSQIHFSPSDTMLLWNGILW 1666 (1922)
Q Consensus 1632 tL~d~s~~~~------~~gh~~~vVaFSPdG~lLaSggrLW 1666 (1922)
.+.-..+... ..+..-+-++|+|+++.|+..|+.|
T Consensus 185 ~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 185 WIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp EEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred EEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 8862222110 1122334499999888777777433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.025 Score=65.85 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=102.8
Q ss_pred cceeeecCceeeEEecCCCCCCEEE--EEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTC--ITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~--LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~ 1566 (1922)
.+.+...+.+.++.+ -. ..+.. +++. ++.| +..-.++.+.+||..+.+.+.++..-.. -+.+ ++|++
T Consensus 77 v~~iD~~Tgkv~~~~-l~--~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGL----t~Dg~ 146 (268)
T 3nok_A 77 LRQLSLESAQPVWME-RL--GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGL----CYWNG 146 (268)
T ss_dssp EEECCSSCSSCSEEE-EC--TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCE----EEETT
T ss_pred EEEEECCCCcEEeEE-CC--CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEE----ecCCC
Confidence 455556666666665 21 22333 4544 4444 4445788999999999999998864322 2444 34666
Q ss_pred EEEEec-CCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1567 LLLSSS-SQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1567 lLaSSs-DgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
.|+.++ +++|.++|..+ .+.+.++.- .+.+.|. +|+.++.. -.+..|.+.|..+++.+.++.-.
T Consensus 147 ~L~vSdGs~~l~~iDp~T--~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv---w~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 147 KLVRSDGGTMLTFHEPDG--FALVGAVQVKLRGQPVELINELECA-NGVIYANI---WHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp EEEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE---TTCSEEEEECTTTCBEEEEEECH
T ss_pred EEEEECCCCEEEEEcCCC--CeEEEEEEeCCCCcccccccccEEe-CCEEEEEE---CCCCeEEEEeCCCCcEEEEEECC
Confidence 666654 88999999987 666665532 1456666 77666554 55789999999999999988622
Q ss_pred ccc------ccCCCCcceEEEEcCCCCeEeeccEEE
Q 000177 1637 SVN------LTGRGHAYSQIHFSPSDTMLLWNGILW 1666 (1922)
Q Consensus 1637 s~~------~~~~gh~~~vVaFSPdG~lLaSggrLW 1666 (1922)
.+. ....+..-+-++|+|+++.|+..|+.|
T Consensus 221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W 256 (268)
T 3nok_A 221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW 256 (268)
T ss_dssp HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred CCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence 111 101122334499999887777666444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.28 Score=60.43 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=85.8
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecC----Cc-EEEeccCC
Q 000177 1511 LLTCITFLGD--SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS----QD-VHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPD--G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsD----gt-VkLWDl~t 1583 (1922)
....++|+|+ +..|+.+...+.|+.+|..++.... +.........| +++++|+++++... .. +..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~gi--avd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADV--NFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEE--EECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEE--EECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 3568999984 4456665555899999987776543 33344567888 88999997777532 12 33333322
Q ss_pred CCC--CcceEeccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eE
Q 000177 1584 IAG--GPMHSFEGCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-ML 1659 (1922)
Q Consensus 1584 ~~g--k~l~tf~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lL 1659 (1922)
... ..+..+...+.++++| +|..+++- ..++.|+.||..++.....+... ........++|+|+|+ ++
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d---~~~~~V~~~d~~~g~~~~~~~~~-----~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTR---YHHAMISSYDPATGTLTEEEVMM-----DTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECB---TTCSEEEEECTTTCCEEEEEEEC-----SCCSSCEEEEECTTSSEEE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEE---CCCCEEEEEECCCCeEEEEEecc-----CCCCCcccEEEeCCCCEEE
Confidence 100 1122334457899999 66666554 56788999999877663333100 0011122499999998 44
Q ss_pred eecc
Q 000177 1660 LWNG 1663 (1922)
Q Consensus 1660 aSgg 1663 (1922)
++..
T Consensus 289 vad~ 292 (433)
T 4hw6_A 289 IIYN 292 (433)
T ss_dssp EEET
T ss_pred EEeC
Confidence 5444
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.28 Score=60.27 Aligned_cols=140 Identities=13% Similarity=0.172 Sum_probs=84.8
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEEec-CC----cEEEeccCC
Q 000177 1511 LLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLSSS-SQ----DVHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaSSs-Dg----tVkLWDl~t 1583 (1922)
....++|+| ++..|+.....+.|+.+|+.++... .+.........| +|+++++ ++++.. .+ .+.+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~i--a~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTI--CWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEE--EECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceE--EEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 456899998 4666766666688999998766543 333344557788 8899999 445532 22 233333321
Q ss_pred CCCC---cceEeccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-e
Q 000177 1584 IAGG---PMHSFEGCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-M 1658 (1922)
Q Consensus 1584 ~~gk---~l~tf~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-l 1658 (1922)
... .+..+...+.++++| ++..+++- ...+.|..||..++.....+. .........++|+|+|+ +
T Consensus 215 -~~~~~~~l~~~~~p~giavdp~~g~lyv~d---~~~~~V~~~~~~~~~~~~~~~------~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 215 -GFKVITELTKGQNCNGAETHPINGELYFNS---WNAGQVFRYDFTTQETTPLFT------IQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp -TSCSEEEEEECSSCCCEEECTTTCCEEEEE---TTTTEEEEEETTTTEEEEEEE------CSSSSCCEEEEECTTSSEE
T ss_pred -ceeeeeeeccCCCceEEEEeCCCCEEEEEE---CCCCEEEEEECCCCcEEEEEE------cCCCCcceeEEEcCCCCEE
Confidence 111 122334458899999 67766664 567889999998765422222 00111223499999999 4
Q ss_pred Eeecc
Q 000177 1659 LLWNG 1663 (1922)
Q Consensus 1659 LaSgg 1663 (1922)
+++..
T Consensus 285 yv~d~ 289 (430)
T 3tc9_A 285 YIVVV 289 (430)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 44433
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.11 Score=68.62 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=83.5
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhhccCCCccccc--ccceeee
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFF--GLSSCLF 637 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~vPR~s~a~t--gvS~Cly 637 (1922)
.+...+++..++.+|.... ...+...+++.|..|..+......+++.|+|+.|+.+=+..-..+ ....+|.
T Consensus 313 ~i~~~~~i~~Lv~lL~~~~-------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 313 IILASGGPQALVNIMRTYT-------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp HHHTTTHHHHHHHHHTTCC-------CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCC-------HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556777877777775311 112233445556666666677788999999999998766542110 1112222
Q ss_pred hhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hcchhHHHHHhhhcccHHHHHHHHh
Q 000177 638 TIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAA-AFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 638 ylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
.|+....- ...+..+|..-+.||.+.+...|.+|+.-|+. +..-......+=..+|+..|+.+|.
T Consensus 386 ~L~~~~~~--------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 451 (780)
T 2z6g_A 386 NLSDAATK--------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451 (780)
T ss_dssp HHHTTCTT--------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHhccchh--------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence 22222111 11235677888888999999999999877753 3333444555556789999998886
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.081 Score=68.67 Aligned_cols=206 Identities=15% Similarity=0.198 Sum_probs=127.0
Q ss_pred CCEEEEEeC------CCcEEEEECCCCCceeeeccC--C-C----------------------------CeeEEEeeecC
Q 000177 1521 SSHIAVGSH------TKELKIFDSNSSSPLESCTSH--Q-A----------------------------PVTLVQSHLSG 1563 (1922)
Q Consensus 1521 G~lLASGS~------DGtIkIWDl~tgk~l~tL~gH--s-s----------------------------~VtsLq~afSp 1563 (1922)
+..+++++. +|.|..||..+|+.+-++... . . ....+ ++++
T Consensus 162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~--a~d~ 239 (668)
T 1kv9_A 162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSM--AYDP 239 (668)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCE--EEET
T ss_pred CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccce--EEcC
Confidence 345555543 589999999999988766321 0 0 01123 5677
Q ss_pred CCcEEEEe-cCC-------------------cEEEeccCCCCCCcceEecc--c--e---------eEEEcCCCC---EE
Q 000177 1564 ETQLLLSS-SSQ-------------------DVHLWNASSIAGGPMHSFEG--C--K---------AARFSNSGN---LF 1607 (1922)
Q Consensus 1564 DG~lLaSS-sDg-------------------tVkLWDl~t~~gk~l~tf~g--h--~---------sVaFSPDG~---~L 1607 (1922)
++.++..+ .++ .|..+|..+ ++.+..++. | + ...+..+|+ .+
T Consensus 240 ~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v 317 (668)
T 1kv9_A 240 ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVL 317 (668)
T ss_dssp TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEE
Confidence 66666654 343 388899988 887777653 1 0 111223554 56
Q ss_pred EEeecCCCCCeEEEEECCCCceeeeecccc--cc--------------------------ccCC-CCcceEEEEcCCCCe
Q 000177 1608 AALPTETSDRGILLYDIQTYQLEAKLSDTS--VN--------------------------LTGR-GHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1608 aSgS~~S~DgtIrIWDlrTgk~i~tL~d~s--~~--------------------------~~~~-gh~~~vVaFSPdG~l 1658 (1922)
+.+ +.+|.++++|..+|+.+..+.-.. +. .... ++.-..++|+|+..+
T Consensus 318 ~~~---~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~ 394 (668)
T 1kv9_A 318 MQA---PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (668)
T ss_dssp EEC---CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred EEE---CCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCE
Confidence 676 789999999999999874432100 00 0000 011112667776554
Q ss_pred Eee---------------------------------------cc--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEE
Q 000177 1659 LLW---------------------------------------NG--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1659 LaS---------------------------------------gg--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LAS 1697 (1922)
+.. .+ ..||+.+|+.+.++..........+...|..|++
T Consensus 395 ~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~ 474 (668)
T 1kv9_A 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ 474 (668)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE
T ss_pred EEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE
Confidence 431 02 6799999998887765544334455566777777
Q ss_pred Ee-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1698 NS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
++ .+||.++++.+..+..... .-+.+..+|+..++.
T Consensus 475 g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~ 518 (668)
T 1kv9_A 475 GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI 518 (668)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEE
Confidence 77 4899999999988874432 567777788754443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.41 Score=62.76 Aligned_cols=209 Identities=11% Similarity=0.108 Sum_probs=134.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec----cCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT----SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~----gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~ 1585 (1922)
..|+++...++|++|..|+.++-|.+||..+++...... .+...|.++ ...++|.+.+++. +-+.+||..+
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i--~~d~~g~lwigt~-~Gl~~~~~~~-- 480 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI--LPDGEGNLWLGTL-SALVRFNPEQ-- 480 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE--EECSSSCEEEEES-SCEEEEETTT--
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE--EECCCCCEEEEec-CceeEEeCCC--
Confidence 569999999999867888888889999988776433221 235678999 7788898888766 5588888765
Q ss_pred CCcceEe-----------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1586 GGPMHSF-----------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1586 gk~l~tf-----------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
++. ..+ ..+.++...++|+..+.+ . +-+..||..+++. .+.............+..+...+
T Consensus 481 ~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~ 552 (795)
T 4a2l_A 481 RSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG---E--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEAS 552 (795)
T ss_dssp TEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE---S--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECT
T ss_pred CeE-EEccccccccccCCceEEEEEECCCCCEEEEe---C--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECC
Confidence 322 111 124677788888877765 2 3488999887765 33200000001123344577888
Q ss_pred CCCeEeec-c--EEEEcCCCcceeeec---cC-CCce-EEEEecCCCEEEEEe---EEEecCCCeEEEEEc---CCCc--
Q 000177 1655 SDTMLLWN-G--ILWDRRNSVPVHRFD---QF-TDHG-GGGFHPAGNEVIINS---EVWDLRKFRLLRSVP---SLDQ-- 1718 (1922)
Q Consensus 1655 dG~lLaSg-g--rLWDlrtgk~I~kf~---gh-~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~tl~---gH~~-- 1718 (1922)
+|.+.+.. + ..||..+++. ..|. +. ...+ ++...++|...+++. -.||..+++. ..+. +...
T Consensus 553 ~g~lWigT~~Gl~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~~Gl~~~~~~~~~~-~~~~~~dGl~~~~ 630 (795)
T 4a2l_A 553 NGIIWVGTREGFYCFNEKDKQI-KRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKF-RNFTESDGLQSNQ 630 (795)
T ss_dssp TSCEEEEESSCEEEEETTTTEE-EEECGGGTCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEE-EEECGGGTCSCSC
T ss_pred CCCEEEEeCCCceeECCCCCcE-EEeCCCCCCchhheEEEEECCCCCEEEEcCCceEEEcCCCCcE-EEcCCcCCCcccc
Confidence 99876643 2 7888776643 3332 22 2345 788888898766665 3678776653 3443 2221
Q ss_pred ---eeEEEccCCCEEEEE
Q 000177 1719 ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1719 ---~sVaFSPdG~~LaSg 1733 (1922)
.++...++|.+.+++
T Consensus 631 f~~~~~~~~~~G~l~~g~ 648 (795)
T 4a2l_A 631 FNTASYCRTSVGQMYFGG 648 (795)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred CccCceeECCCCeEEEec
Confidence 366778899888876
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.15 Score=58.96 Aligned_cols=175 Identities=10% Similarity=0.077 Sum_probs=100.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
..+..++|+++|+++++..... .|..++..+++...... ........+ +..+++.++++. ..+.|..+|.....
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~--~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI--TPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEE--EESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcc--cccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 4578999999999666554432 46677777776543222 122233445 334556666664 47888888875310
Q ss_pred CCcc------------eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cce--eeeeccccccccCCCCcceEE
Q 000177 1586 GGPM------------HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQL--EAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1586 gk~l------------~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~--i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
++.. ..+...+.+ +|++++|+.+ +...+.|..||+.. ++. ...+. . .....-+
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~--d~~~~~I~~~~~~~~g~~~~~~~~~-----~---~~~P~gi 217 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS--NTEKMLLLRIPVDSTDKPGEPEIFV-----E---QTNIDDF 217 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE--ETTTTEEEEEEBCTTSCBCCCEEEE-----E---SCCCSSE
T ss_pred EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE--eCCCCEEEEEEeCCCCCCCccEEEe-----c---cCCCCCe
Confidence 0110 111122445 7888777665 25678999999875 321 11111 0 0111228
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcc--eeeeccC-CCceEEEEe---cCCCEEEEEe
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVP--VHRFDQF-TDHGGGGFH---PAGNEVIINS 1699 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~--I~kf~gh-~~~VsVaFS---PdG~~LASGS 1699 (1922)
+++++|+++++.. .+||.. ++. +..+... ....+++|. |++..|++.+
T Consensus 218 ~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 218 AFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 9999999888653 667754 554 2233333 334489998 8988776654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.54 Score=60.52 Aligned_cols=108 Identities=9% Similarity=0.069 Sum_probs=69.1
Q ss_pred EEEEEeCCCcEEEEECCCCCceeeeccCC----CCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCCCcceEe
Q 000177 1523 HIAVGSHTKELKIFDSNSSSPLESCTSHQ----APVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAGGPMHSF 1592 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~tgk~l~tL~gHs----s~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~gk~l~tf 1592 (1922)
+|+.++.|+.|.-+|..+|+.+-...... ..+++- ... .++.+++.+. ++.|.-+|..+ ++.+.++
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ss-P~v-~~g~V~vg~~g~e~g~~g~v~A~D~~T--G~~~W~~ 198 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIA-PYV-VKDKVIIGSSGAELGVRGYLTAYDVKT--GEQVWRA 198 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC-CEE-ETTEEEECCBCGGGTCCCEEEEEETTT--CCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecC-CEE-ECCEEEEEecccccCCCCeEEEEECCC--CcEEEEE
Confidence 38889999999999999999876653221 112211 011 1565555542 78999999988 7776655
Q ss_pred ccc------------------------------------------eeEEEcCCCCEEEEeecCC-------------CCC
Q 000177 1593 EGC------------------------------------------KAARFSNSGNLFAALPTET-------------SDR 1617 (1922)
Q Consensus 1593 ~gh------------------------------------------~sVaFSPDG~~LaSgS~~S-------------~Dg 1617 (1922)
... ..+++.+...+++.+.... ...
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence 421 0234556666666662111 024
Q ss_pred eEEEEECCCCceeeeec
Q 000177 1618 GILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1618 tIrIWDlrTgk~i~tL~ 1634 (1922)
.|..+|..||+.+..+.
T Consensus 279 sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCCceeeEee
Confidence 79999999999988775
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.18 Score=66.65 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=86.3
Q ss_pred HHHHHhhhchhHHHHHhhhhh-ccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhhc
Q 000177 543 YCIQCLETLGEYVEVLGPVLH-EKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLA 621 (1922)
Q Consensus 543 ~~l~~L~~lGEYqE~L~~~~~-~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~ 621 (1922)
..+.+|.-|.+..+.-..+.. .+.+..++.+|... .+...-..|.+.|..|..+......+++.|+|+.|++
T Consensus 169 ~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-------~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~ 241 (780)
T 2z6g_A 169 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVN 241 (780)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-------CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHH
Confidence 344444444443333323343 35666666666431 1223455778888888888888888999999999988
Q ss_pred cCCCcccc--cccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHh-hhhcchhHHHHHhh
Q 000177 622 VPRNNQTF--FGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFF-AAAFVFRAIIDAFD 697 (1922)
Q Consensus 622 vPR~s~a~--tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF-~~sf~Fr~il~~FD 697 (1922)
+=+..... .....||+.|++.. ...+.+.. ...|..-+.||..++..-+..|+..+ .+++........|-
T Consensus 242 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~------~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL------AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH------TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH------cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 76554211 12333455555442 22211111 13455566677766666565554333 23333455555666
Q ss_pred hcccHHHHHHHHh
Q 000177 698 AQDGLQKLLGLLN 710 (1922)
Q Consensus 698 ~~dGLrkL~N~i~ 710 (1922)
..+|+..|+.+|.
T Consensus 316 ~~~~i~~Lv~lL~ 328 (780)
T 2z6g_A 316 ASGGPQALVNIMR 328 (780)
T ss_dssp TTTHHHHHHHHHT
T ss_pred HcCCHHHHHHHHh
Confidence 6677777777665
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.15 Score=65.18 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=92.9
Q ss_pred CcEEEeccCCCCCCcceEecc--c--------ee-EEEc---CCCC---EEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG--C--------KA-ARFS---NSGN---LFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g--h--------~s-VaFS---PDG~---~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
+.|.-+|..+ ++.+..++. | .. +.+. .+|+ .++.+ +.+|.++++|..+|+.+..+.-.
T Consensus 291 ~~v~AlD~~T--G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~---~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 291 SGQVGVDPSS--GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHA---DRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp SEEEEECTTT--CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEE---CTTSEEEEEETTTCCEEEEEESS
T ss_pred ceEEEEeCCC--CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEE---CCCceEEEEECCCCCEecccccc
Confidence 5788999988 787777642 1 11 2222 4564 56666 78999999999999988765411
Q ss_pred c-cc------------------------------------ccCCCCc-ceEEEEcCCCCeEeec----------------
Q 000177 1637 S-VN------------------------------------LTGRGHA-YSQIHFSPSDTMLLWN---------------- 1662 (1922)
Q Consensus 1637 s-~~------------------------------------~~~~gh~-~~vVaFSPdG~lLaSg---------------- 1662 (1922)
. .+ ....+.. -..++++|+..+++..
T Consensus 366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 445 (582)
T 1flg_A 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccccc
Confidence 0 00 0000000 0125667765544321
Q ss_pred --------------------c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1663 --------------------G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1663 --------------------g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
+ ..||+.+|+.+.++..............|..|++++ +.||.++|+.+-++..
T Consensus 446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 2 668888888877765443222212222355566665 4899999999988874
Q ss_pred CCc---eeEEEccCCCEEEEE
Q 000177 1716 LDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1716 H~~---~sVaFSPdG~~LaSg 1733 (1922)
... .-+.|..+|+..++.
T Consensus 526 ~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 526 GSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp SSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEE
Confidence 332 568888888755544
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.13 Score=63.82 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=92.7
Q ss_pred HHHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhh
Q 000177 542 KYCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKL 619 (1922)
Q Consensus 542 ~~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~L 619 (1922)
...+.+|+-+... .+.-..++..+++..++.+|.. .+..+...|++.|..|..+ ..+...+++.|+++.|
T Consensus 136 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~L 207 (528)
T 4b8j_A 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS--------SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPL 207 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHH
Confidence 3455556555542 4555567788899988888753 2224556778888888765 4566778899999999
Q ss_pred hccCCCccc---ccccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcch-hHHHHH
Q 000177 620 LAVPRNNQT---FFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVF-RAIIDA 695 (1922)
Q Consensus 620 L~vPR~s~a---~tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~F-r~il~~ 695 (1922)
+.+=+.+.. -.....||+.|+... ...+..++..++..-+.||..++...+.+|+..++.-... ....+.
T Consensus 208 l~lL~~~~~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 281 (528)
T 4b8j_A 208 LAQLNEHTKLSMLRNATWTLSNFCRGK------PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 281 (528)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHHCSS------SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCC------CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 988743211 112333444444332 0112233455677777788888888887777666543332 222233
Q ss_pred hhhcccHHHHHHHHh
Q 000177 696 FDAQDGLQKLLGLLN 710 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~ 710 (1922)
+=..+++..|+.+|.
T Consensus 282 ~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 282 VIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHTTCHHHHHHHTT
T ss_pred HHHcCHHHHHHHHHc
Confidence 333467777776653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=2.9 Score=54.77 Aligned_cols=212 Identities=10% Similarity=0.104 Sum_probs=126.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-------CCCCeeEEEeeecCCCcEEEEecCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-------HQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-------Hss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~ 1582 (1922)
..|.++...++|. |..|+.++-|.+||..+++....... ....|.++ ...++|.+.++... -|.+||..
T Consensus 215 ~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i--~~d~~g~lWigt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 215 KQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSL--AMDSQNRLWIGTFN-DLNIYHEG 290 (795)
T ss_dssp CCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEE--EECTTSCEEEEESS-CEEEEETT
T ss_pred CeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEE--EEcCCCCEEEEeCC-hhheEcCC
Confidence 5689998888776 44556554588999876654332211 13568999 77888888877655 68889876
Q ss_pred CCCCCcceEe------------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1583 SIAGGPMHSF------------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1583 t~~gk~l~tf------------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
+ +. ...+ ..++++...++|...+. +.++-|..||..++.... +.............+..+
T Consensus 291 ~--~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWig----t~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i 362 (795)
T 4a2l_A 291 T--DS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLG----TYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCI 362 (795)
T ss_dssp T--TE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEE----ESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEE
T ss_pred C--Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEE----ECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEE
Confidence 5 22 2222 12467788888886655 344568999987655322 221110111122345557
Q ss_pred EEcCCCCeEeec---c-EEEEcCCCcceeeecc--------CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE
Q 000177 1651 HFSPSDTMLLWN---G-ILWDRRNSVPVHRFDQ--------FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1651 aFSPdG~lLaSg---g-rLWDlrtgk~I~kf~g--------h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t 1712 (1922)
...++|.+.+.. | ..||..+++..+-... ....| ++...++|..|.+|+ .+||..+++...-
T Consensus 363 ~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 363 VEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp EECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 788888876632 3 7888776654322111 12345 788888888333333 3778877664332
Q ss_pred Ec------CCCceeEEEccCCCEEEEE
Q 000177 1713 VP------SLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1713 l~------gH~~~sVaFSPdG~~LaSg 1733 (1922)
.. .....++...++|.+.+++
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 21 1222678888888877665
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.16 Score=64.71 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=92.1
Q ss_pred cEEEeccCCCCCCcceEeccc----------eeE---EEcCCCC---EEEEeecCCCCCeEEEEECCCCceeeeecccc-
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----------KAA---RFSNSGN---LFAALPTETSDRGILLYDIQTYQLEAKLSDTS- 1637 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----------~sV---aFSPDG~---~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s- 1637 (1922)
.|..+|..+ ++.+..++.. ... ...++|+ .++.+ +.+|.+.++|..+|+.+..+.-..
T Consensus 273 ~v~Ald~~t--G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~---~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 273 TIWGRDLDT--GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHI---DRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp EEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEE---CTTSEEEEEETTTCCEEEEEESSTT
T ss_pred EEEEEecCC--CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEe---CCCcEEEEEECCCCCEEeeecccCC
Confidence 588888887 7777666421 111 1123564 45666 778999999999999877654110
Q ss_pred cc------------------------------ccCC-CCcceEEEEcCCCCeEeec------------------------
Q 000177 1638 VN------------------------------LTGR-GHAYSQIHFSPSDTMLLWN------------------------ 1662 (1922)
Q Consensus 1638 ~~------------------------------~~~~-gh~~~vVaFSPdG~lLaSg------------------------ 1662 (1922)
.. .... ++.-..++|+|+..+++..
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 00 0000 0111125677776555421
Q ss_pred ----------------c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-
Q 000177 1663 ----------------G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1663 ----------------g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~- 1718 (1922)
+ ..||+.+++.+.++.......+..+...+..|+.++ ..||.++++.+.++.....
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~ 507 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence 2 678888888877775433222222333455555565 4899999999988873332
Q ss_pred --eeEEEccCCCEEEEE
Q 000177 1719 --TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSg 1733 (1922)
..+.+..+|+.+++.
T Consensus 508 ~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 508 IGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp CSCCEEEEETTEEEEEE
T ss_pred EeeeEEEEECCEEEEEE
Confidence 466777888866655
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.11 Score=66.63 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=89.4
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh--hhhHHHHhccccchhhhccCCCc---ccccccce
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH--RKFAALFVDRGGMQKLLAVPRNN---QTFFGLSS 634 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H--kKfA~eFV~~gGlq~LL~vPR~s---~a~tgvS~ 634 (1922)
.|.+.+++-.+..||.. .+..+-+.|.+.|..|..| ...-...++.|||+.|+.+=+.. ..---+..
T Consensus 85 ~V~~~G~Ip~LV~LL~s--------~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~ 156 (584)
T 3l6x_A 85 DVRKLKGIPVLVGLLDH--------PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITG 156 (584)
T ss_dssp HHHHTTHHHHHHHGGGC--------SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHCC--------CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHH
Confidence 46788898887887753 2345678899999999986 67888889999999999887642 11224456
Q ss_pred eeehhcchhhHHHHhhcCChhhHHHHHHHHH-----HHHh---------cCChHHhhhHhhH-hhhhcch---hHHHHHh
Q 000177 635 CLFTIGSLQGIMERVCALPTDVVHQLVELAI-----QLLE---------CTQDQARKNAALF-FAAAFVF---RAIIDAF 696 (1922)
Q Consensus 635 Clyylay~~~aMERvC~lp~~vl~~lV~yaL-----wLLe---------cshds~r~~A~mF-F~~sf~F---r~il~~F 696 (1922)
||+.||.++..-+.|+. .-+..||+..+ |... .+....++||+-. +.+|... |..+..
T Consensus 157 aL~nLS~~~~~k~~I~~---~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~- 232 (584)
T 3l6x_A 157 TLWNLSSHDSIKMEIVD---HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE- 232 (584)
T ss_dssp HHHHHTTSGGGHHHHHH---HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-
T ss_pred HHHHHhCCchhhHHHHh---ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-
Confidence 99999999887777763 34555665432 2111 1234556666643 3445442 333322
Q ss_pred hhcccH-HHHHHHHhh
Q 000177 697 DAQDGL-QKLLGLLND 711 (1922)
Q Consensus 697 D~~dGL-rkL~N~i~~ 711 (1922)
.+|+ ..|+.+|..
T Consensus 233 --~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 233 --CDGLVDALIFIVQA 246 (584)
T ss_dssp --STTHHHHHHHHHHH
T ss_pred --cCCcHHHHHHHHHH
Confidence 3565 488888863
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.023 Score=62.65 Aligned_cols=223 Identities=20% Similarity=0.215 Sum_probs=142.2
Q ss_pred cchhhHHHHHHHHhhhhh-hHHHHhccccchhhhccCCCccc--ccccceeeehhcch-hhHHHHhhcCChhhHHHHHHH
Q 000177 588 MLLPDVMKLICALAAHRK-FAALFVDRGGMQKLLAVPRNNQT--FFGLSSCLFTIGSL-QGIMERVCALPTDVVHQLVEL 663 (1922)
Q Consensus 588 ~l~~eaLk~l~aLl~HkK-fA~eFV~~gGlq~LL~vPR~s~a--~tgvS~Clyylay~-~~aMERvC~lp~~vl~~lV~y 663 (1922)
.+-..|++.|..|..+.. ....|++.|+++.|+++=+.+.. -.....||..|+.. ++..+.+... ..|..
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~ 90 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA------GGVEV 90 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC------CCHHH
Confidence 456789999999987765 88899999999999988765431 11333455555555 4444443322 35777
Q ss_pred HHHHHhcCChHHhhhHhhHhhhhc-chhHHHHHhhhcccHHHHHHHHhhhhccccccCCCccccCCccCcCCCCCChhhh
Q 000177 664 AIQLLECTQDQARKNAALFFAAAF-VFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVL 742 (1922)
Q Consensus 664 aLwLLecshds~r~~A~mFF~~sf-~Fr~il~~FD~~dGLrkL~N~i~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~e~~ 742 (1922)
-+.+|..+++..|.+|+..++.-. ......+.+-..+++..|+.++.. ++
T Consensus 91 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-------------------------~~---- 141 (252)
T 4hxt_A 91 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-------------------------TD---- 141 (252)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-------------------------SC----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-------------------------CC----
Confidence 888899888888988887776655 566666666677888888877641 00
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCcCcccccccCCHHHHHHHHHHhhcccccCcccccC
Q 000177 743 TSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVRT 822 (1922)
Q Consensus 743 ~~s~rQ~~~h~c~aLR~Yf~aHL~~~v~~~~~~~~~~s~~~~~~~~~~~~k~~~~s~e~~~~~~~~l~~~r~~~~~~~~~ 822 (1922)
.++...+|.+|..... . +.+..
T Consensus 142 ----~~~~~~a~~~L~~l~~---------------------~-------------~~~~~-------------------- 163 (252)
T 4hxt_A 142 ----SEVQKEAARALANIAS---------------------G-------------PDEAI-------------------- 163 (252)
T ss_dssp ----HHHHHHHHHHHHHHTT---------------------S-------------CHHHH--------------------
T ss_pred ----HHHHHHHHHHHHHHHc---------------------C-------------CHHHH--------------------
Confidence 1355666766654211 0 00100
Q ss_pred cchHHHHHHhcCChHHHHhhhcCCCchhhHHHHHHHHhccceEEEe-ecchhhhhhhccccCCccchHHHHhhhhccCCC
Q 000177 823 RWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVLHIVTL-VPNSRKMIVNATLSNNHTGIAVILDAANAVSSY 901 (1922)
Q Consensus 823 ~W~pvd~f~~l~g~~~lL~l~~~~~~~r~~~e~v~~aL~vL~i~tv-vP~~r~~l~~~~~s~~~~Gi~ilL~~a~~g~~~ 901 (1922)
..+...|++..|++++.... .++...|+.+|.-++. .|..+..+.+ ..++..|+.... .
T Consensus 164 -----~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll~-~--- 223 (252)
T 4hxt_A 164 -----KAIVDAGGVEVLVKLLTSTD-----SEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLLT-S--- 223 (252)
T ss_dssp -----HHHHHTTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGGG-C---
T ss_pred -----HHHHHCcCHHHHHHHHCCCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHC-C---
Confidence 13344467777777777432 2444455555544433 3333333333 347788888886 2
Q ss_pred CCccchhHHHHHhhhcccCCCc
Q 000177 902 VDPEIIQPALNVLINLVCPPPS 923 (1922)
Q Consensus 902 ~D~ev~~~AL~Vl~ncVc~P~~ 923 (1922)
.|+++++.|+.+|.|+...+..
T Consensus 224 ~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 224 TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp SCHHHHHHHHHHHHHHHHTCBC
T ss_pred CcHHHHHHHHHHHHHHHcCCCc
Confidence 3789999999999999988863
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.68 Score=55.22 Aligned_cols=96 Identities=9% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeec---cCCCCeeEEEeeecCC----CcEEEEec-C-----C
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCT---SHQAPVTLVQSHLSGE----TQLLLSSS-S-----Q 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~---gHss~VtsLq~afSpD----G~lLaSSs-D-----g 1574 (1922)
..-+.++|.|+|++++ +..+|.|++++ +++.. ..+. ........| +++|+ +.+.++.. . .
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gi--a~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGL--ALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEE--EECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeE--EECCCCCCCCEEEEEEecCCCCCcc
Confidence 4578999999998554 46679999998 44321 1111 123467788 88998 55555532 2 5
Q ss_pred cEEEeccCCCC---CCcc-eEec---c--c--eeEEEcCCCCEEEEe
Q 000177 1575 DVHLWNASSIA---GGPM-HSFE---G--C--KAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1575 tVkLWDl~t~~---gk~l-~tf~---g--h--~sVaFSPDG~~LaSg 1610 (1922)
.|..|+..... .+.+ ..+. + | ..++|.|+|..+++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 67777765310 0111 1132 1 2 579999999877764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.18 Score=66.23 Aligned_cols=111 Identities=10% Similarity=0.034 Sum_probs=65.8
Q ss_pred EEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCce--eeec-cCCCCeeEEEeeecCCCcEEEE-ec---CCcEEEec
Q 000177 1513 TCITFLGDSSHIAVGSHT-----KELKIFDSNSSSPL--ESCT-SHQAPVTLVQSHLSGETQLLLS-SS---SQDVHLWN 1580 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~D-----GtIkIWDl~tgk~l--~tL~-gHss~VtsLq~afSpDG~lLaS-Ss---DgtVkLWD 1580 (1922)
..++|+|||+.|+....| ..|.+|++.+++.. ..+. .+......+ .|||||++|+. +. ...|.++|
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~--~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFM--YKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEE--EECTTSSEEEEEEECSSCEEEEEEE
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEE--EECCCCCEEEEEecCCCCceEEEEE
Confidence 357899999988877765 36888898876532 3333 223344555 89999998876 32 34688889
Q ss_pred cCCCCCCc-ceEe-ccc----eeEEEcCCCCEEEEeecC--CCCCeEEEEECCC
Q 000177 1581 ASSIAGGP-MHSF-EGC----KAARFSNSGNLFAALPTE--TSDRGILLYDIQT 1626 (1922)
Q Consensus 1581 l~t~~gk~-l~tf-~gh----~sVaFSPDG~~LaSgS~~--S~DgtIrIWDlrT 1626 (1922)
+.+..+.. +..+ ... .++.|+. |+.|+..+.. .....|..+|+.+
T Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 302 LRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 87621222 0223 222 3344433 5555444322 1345677788765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.38 Score=55.71 Aligned_cols=136 Identities=9% Similarity=0.037 Sum_probs=84.2
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeec----c-CCCCeeEEEeeecC-CCcEEEEec-----------
Q 000177 1511 LLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCT----S-HQAPVTLVQSHLSG-ETQLLLSSS----------- 1572 (1922)
Q Consensus 1511 ~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~----g-Hss~VtsLq~afSp-DG~lLaSSs----------- 1572 (1922)
.+..+++.+ +| .|+.+...+.|.+||..++.. ..+. + .....+.+ .+.+ +|++.++..
T Consensus 81 ~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i--~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 81 RTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAV--TVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CEEEEEEETTTT-EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEE--EECTTTCCEEEEESCSSCCTTCHHH
T ss_pred CCceEEEcCCCC-cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceE--EEecCCCEEEEECCcccccccccce
Confidence 478899998 55 455555556688888765543 2221 1 12346778 7899 999888742
Q ss_pred -------CCcEEEeccCCCCCCcc---eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc--eeeeeccccccc
Q 000177 1573 -------SQDVHLWNASSIAGGPM---HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ--LEAKLSDTSVNL 1640 (1922)
Q Consensus 1573 -------DgtVkLWDl~t~~gk~l---~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk--~i~tL~d~s~~~ 1640 (1922)
++.|..||..+ ++.. ..+...+.++|+|++++|+.+ +...+.|.+||+.... ....+..
T Consensus 157 ~~~~~~~~g~v~~~d~~~--~~~~~~~~~~~~p~gia~~~dg~~lyv~--d~~~~~I~~~~~~~~~~~~~~~~~~----- 227 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPST--KETTLLLKELHVPGGAEVSADSSFVLVA--EFLSHQIVKYWLEGPKKGTAEVLVK----- 227 (322)
T ss_dssp HHHHTCCCEEEEEEETTT--TEEEEEEEEESCCCEEEECTTSSEEEEE--EGGGTEEEEEESSSTTTTCEEEEEE-----
T ss_pred ehcccCCCceEEEEeCCC--CEEEEeccCCccCcceEECCCCCEEEEE--eCCCCeEEEEECCCCcCCccceEEe-----
Confidence 25688888764 3322 122334789999999866655 2456889999987532 1112210
Q ss_pred cCCCCcceEEEEcCCCCeEeec
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
..+ ..-++++++|+++++.
T Consensus 228 -~~g--P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 228 -IPN--PGNIKRNADGHFWVSS 246 (322)
T ss_dssp -CSS--EEEEEECTTSCEEEEE
T ss_pred -CCC--CCCeEECCCCCEEEEe
Confidence 112 2238899999877754
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=1.1 Score=53.59 Aligned_cols=217 Identities=16% Similarity=0.116 Sum_probs=113.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-ceeeec---cCCCCeeEEEeeecCC----CcEEEEec----C----
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-PLESCT---SHQAPVTLVQSHLSGE----TQLLLSSS----S---- 1573 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-~l~tL~---gHss~VtsLq~afSpD----G~lLaSSs----D---- 1573 (1922)
...+.++|.|+|+ |+++..+|.|++++ .+++ .+..+. ........| +++|+ +.+.++.. +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gi--a~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGL--ALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEE--EECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeE--EeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4578999999998 45556669999997 3454 122211 123457888 78887 56656532 3
Q ss_pred CcEEEeccCCCCCC-----cc-eEec---cc--eeEEEcCCCCEEEEeecCC----------CCCeEEEEECCCCceeee
Q 000177 1574 QDVHLWNASSIAGG-----PM-HSFE---GC--KAARFSNSGNLFAALPTET----------SDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk-----~l-~tf~---gh--~sVaFSPDG~~LaSgS~~S----------~DgtIrIWDlrTgk~i~t 1632 (1922)
..|..|+....... .+ ..+. .| ..+.|.|+|.++++.+..+ ..+.|.-+|... +...
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~- 182 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPA- 182 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCT-
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCC-
Confidence 56777776541001 11 1122 13 5699999998777752211 124555555432 1000
Q ss_pred eccc--cccccCCCCcceE-EEEcC-CCCeEeecc------EEEEcCCCc------------------ceeee-ccCCCc
Q 000177 1633 LSDT--SVNLTGRGHAYSQ-IHFSP-SDTMLLWNG------ILWDRRNSV------------------PVHRF-DQFTDH 1683 (1922)
Q Consensus 1633 L~d~--s~~~~~~gh~~~v-VaFSP-dG~lLaSgg------rLWDlrtgk------------------~I~kf-~gh~~~ 1683 (1922)
..+ .......++..+. ++|+| +|+++++.. .|.-+..+. ++..+ ..+...
T Consensus 183 -~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 183 -DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp -TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred -CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 000 0000012344333 99999 788777554 344333322 33444 233334
Q ss_pred eEEEEe-------cCCCEEEEEe---EEEec--CC-CeEE--EEEc-CC--CceeEEEccCCCEEEEE
Q 000177 1684 GGGGFH-------PAGNEVIINS---EVWDL--RK-FRLL--RSVP-SL--DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1684 VsVaFS-------PdG~~LASGS---eIWDL--rT-gklL--~tl~-gH--~~~sVaFSPdG~~LaSg 1733 (1922)
..+.|. .+|.++++.- +||-+ .. ++.. ..+. +. ....+++.|+|.+.++.
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 477773 5676655543 45543 32 2222 2332 21 22789999999766655
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.79 E-value=1.5 Score=52.29 Aligned_cols=106 Identities=9% Similarity=0.048 Sum_probs=61.1
Q ss_pred CeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe-------ccceeEEEcCC---CCEEEEeecCCCC---CeE
Q 000177 1553 PVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF-------EGCKAARFSNS---GNLFAALPTETSD---RGI 1619 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf-------~gh~sVaFSPD---G~~LaSgS~~S~D---gtI 1619 (1922)
.-+.| +|.|+|+++++..++.|++++ .. ....+..+ .+...++|+|+ +..|+.+.....+ +.|
T Consensus 32 ~P~~i--a~~pdG~l~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWAL--AFLPDGGMLIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEE--EECTTSCEEEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEE--EEcCCCeEEEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 35677 889999988887789999998 21 11112211 12478999998 5555444111111 568
Q ss_pred EEEECCCCcee--eeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1620 LLYDIQTYQLE--AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1620 rIWDlrTgk~i--~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
..|+...+... ..+-..........|....++|.|+|.++++.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 88887644211 11110000001224555669999999988875
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.26 Score=61.21 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=46.0
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCC
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRN 625 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~ 625 (1922)
.+...+++..++.+|... ++..+-+.|++.|+.|..+ ......+++.|++..|+.+=+.
T Consensus 112 ~~~~~g~v~~Lv~lL~~~-------~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~ 171 (528)
T 4b8j_A 112 EVIQSGVVPRFVQFLTRE-------DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS 171 (528)
T ss_dssp HHHHTTCHHHHHHHHTCT-------TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHhCCC-------CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC
Confidence 456788888888888531 1135678899999999987 7788889999999999887654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.14 Score=62.88 Aligned_cols=156 Identities=14% Similarity=0.076 Sum_probs=93.7
Q ss_pred HHHHHHhhhchhHHHHHhhhhhc-cchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhh
Q 000177 542 KYCIQCLETLGEYVEVLGPVLHE-KGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 542 ~~~l~~L~~lGEYqE~L~~~~~~-~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL 620 (1922)
...+.+|.-+....+.-..++.. +++..++.+|... .+..+...+++.|..|..+......+++.||++.|+
T Consensus 35 ~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~ 107 (529)
T 1jdh_A 35 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV 107 (529)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHH
Confidence 34455555555444433344544 6777777777531 122345678888999998888899999999999998
Q ss_pred ccCCCcccc--cccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHh-hhhcchhHHHHHh
Q 000177 621 AVPRNNQTF--FGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFF-AAAFVFRAIIDAF 696 (1922)
Q Consensus 621 ~vPR~s~a~--tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF-~~sf~Fr~il~~F 696 (1922)
++=+.+... .....+|+.|++.. ..-+.++ -...|..-+.+|..++...+..++..+ .+++.....-..|
T Consensus 108 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~------~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i 181 (529)
T 1jdh_A 108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR------LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH------HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH------HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 876544211 11222333333331 1111111 124567777888888888777765444 3444444555555
Q ss_pred hhcccHHHHHHHHh
Q 000177 697 DAQDGLQKLLGLLN 710 (1922)
Q Consensus 697 D~~dGLrkL~N~i~ 710 (1922)
=..+|+..|+.+++
T Consensus 182 ~~~~~i~~L~~ll~ 195 (529)
T 1jdh_A 182 LASGGPQALVNIMR 195 (529)
T ss_dssp HHTTHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 56689999998886
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.33 Score=62.50 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=38.8
Q ss_pred CcEEEeccCCCCCCcceEeccce----------e-EEEc---CCC---CEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGCK----------A-ARFS---NSG---NLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh~----------s-VaFS---PDG---~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
..|.-+|..+ ++.+..++... . +.+. .+| +.++.+ +.+|.+.++|..+|+.+....
T Consensus 278 ~sv~Ald~~T--G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~---~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 278 MTIFGRDADT--GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHP---DRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp SEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEE---CTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCC--CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEE---CCCcEEEEEECCCCCEeeccc
Confidence 3788889888 77777665420 1 2222 457 456666 788999999999999887654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.17 Score=64.87 Aligned_cols=172 Identities=10% Similarity=0.068 Sum_probs=105.9
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCCceeeecc--CC--------CCeeEEEe
Q 000177 1514 CITFLGDSSHIAVGSH--------------------T----KELKIFDSNSSSPLESCTS--HQ--------APVTLVQS 1559 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~--------------------D----GtIkIWDl~tgk~l~tL~g--Hs--------s~VtsLq~ 1559 (1922)
..++.|+..+|+.++. | +.|.-+|..+|+.+-.++. |. .++..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~--- 326 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLF--- 326 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEE---
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEE---
Confidence 4677787778877763 2 6899999999998877642 32 12221
Q ss_pred eec-CCCc---EEEE-ecCCcEEEeccCCCCCCcceEeccc---------------------------------------
Q 000177 1560 HLS-GETQ---LLLS-SSSQDVHLWNASSIAGGPMHSFEGC--------------------------------------- 1595 (1922)
Q Consensus 1560 afS-pDG~---lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh--------------------------------------- 1595 (1922)
... .+|+ +++. +.+|.+.++|..+ ++.+..+...
T Consensus 327 ~~~~~~G~~~~~v~~~~~~G~l~~lD~~t--G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~ 404 (582)
T 1flg_A 327 DYKAKDGKIVKATAHADRNGFFYVVDRSN--GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEV 404 (582)
T ss_dssp EEECSSSCEEEEEEEECTTSEEEEEETTT--CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEE
T ss_pred eeecCCCCEEEEEEEECCCceEEEEECCC--CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEE
Confidence 111 4663 5555 4699999999887 6655433210
Q ss_pred ----------eeEEEcCCCCEEEEeec------------------------------CCCCCeEEEEECCCCceeeeecc
Q 000177 1596 ----------KAARFSNSGNLFAALPT------------------------------ETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1596 ----------~sVaFSPDG~~LaSgS~------------------------------~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
..++|+|+...++.... ...++.|..||+.+|+.+.+...
T Consensus 405 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~ 484 (582)
T 1flg_A 405 SPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE 484 (582)
T ss_dssp SSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE
T ss_pred CcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC
Confidence 13466775544444311 01368899999999998877651
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCC-EEEEE
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGN-EVIIN 1698 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~-~LASG 1698 (1922)
. .....-.....+.+++.++ +.||.++|+.+.+|+...... -+.|..+|+ ||++.
T Consensus 485 ~--------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 485 H--------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp S--------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred C--------CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 1 1111111112344555444 899999999999998765544 477888887 44433
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=95.42 E-value=1.4 Score=55.19 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=88.2
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCcccccccceeeeh
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFT 638 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s~a~tgvS~Clyy 638 (1922)
.+++.+++..++.||.. .+..+--.|++.|..|..| ......+++.||+..|+.+=......+. ....
T Consensus 157 ~vv~~Gaip~Lv~LL~s--------~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~---~~~~ 225 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLAS--------PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGY 225 (529)
T ss_dssp HHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS---CHHH
T ss_pred HHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh---HHHH
Confidence 57788899888887753 2234456788999999876 5777888999999998887654322110 1111
Q ss_pred hcchhhHHHHhhcCC-----hhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hcchhHHHHHhhhcccHHHHHHHHh
Q 000177 639 IGSLQGIMERVCALP-----TDVVHQLVELAIQLLECTQDQARKNAALFFAA-AFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 639 lay~~~aMERvC~lp-----~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
+.....++-.+|.-. -..+..++..-..||.++++..+.+|+.=++. +-......+.+-..+++.+|+.+|.
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 122223333444322 23345677777788899999888888765543 2233344455556678888887764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.94 Score=54.71 Aligned_cols=180 Identities=13% Similarity=0.202 Sum_probs=107.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe--eecCCCc---EEEEe--c--CCcEEEeccCCCCCCcce
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS--HLSGETQ---LLLSS--S--SQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~--afSpDG~---lLaSS--s--DgtVkLWDl~t~~gk~l~ 1590 (1922)
...+++...+.+-+.+||+ +|+.+..+.. +.++.|.. .|.-.|+ +++++ . +++|.+|++... ...+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~~~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-NGTLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-TCCEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-CCcee
Confidence 4557777778889999999 8999888863 45565521 2222333 33333 3 578999977421 12233
Q ss_pred Ee-----------ccceeEEE--cCC-CC-EEEEeecCCCCCeEEEEECC-------CCceeeeeccccccccCCCCcce
Q 000177 1591 SF-----------EGCKAARF--SNS-GN-LFAALPTETSDRGILLYDIQ-------TYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1591 tf-----------~gh~sVaF--SPD-G~-~LaSgS~~S~DgtIrIWDlr-------Tgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.+ .....+++ +|. ++ +++.. ..++.+..|++. +++.+.+|. .+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~---~k~G~~~q~~l~~~~~g~~~~~lVR~f~--------lgsq~E 183 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT---GKEGEFEQYELKADKNGYISGKKVRAFK--------MNSQTE 183 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE---CSSSEEEEEEEEECTTSCEEEEEEEEEE--------CSSCEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE---CCCCeEEEEEEEeCCCCcccceEEEEec--------CCCCcc
Confidence 33 22345676 664 54 34444 567999999883 445566665 233344
Q ss_pred EEEEcCCCCeEeecc---EEEEcC-------CCcceeeecc--CCCce-EEEE--ecCCC-EEEEEe------EEEecC-
Q 000177 1649 QIHFSPSDTMLLWNG---ILWDRR-------NSVPVHRFDQ--FTDHG-GGGF--HPAGN-EVIINS------EVWDLR- 1705 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg---rLWDlr-------tgk~I~kf~g--h~~~V-sVaF--SPdG~-~LASGS------eIWDLr- 1705 (1922)
-+.+.+....|+.+- -||-+. +++.+..+.. ....+ .++. .++|+ ||++.+ .+||..
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 477777666665444 577665 2445655532 22234 4544 67777 677666 399996
Q ss_pred CCeEEEEEc
Q 000177 1706 KFRLLRSVP 1714 (1922)
Q Consensus 1706 TgklL~tl~ 1714 (1922)
+.+.+.+|.
T Consensus 264 ~~~~vg~f~ 272 (355)
T 3amr_A 264 KNKYVADFR 272 (355)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEEE
Confidence 677777764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.13 E-value=2.8 Score=50.56 Aligned_cols=141 Identities=7% Similarity=-0.068 Sum_probs=82.6
Q ss_pred CCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..+..++|++.+..| ++-...+.|..|++..+.....+.........| ++.+. +.++++ ...+.|.++++.. .
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl--avd~~~g~lY~~d~~~~~I~~~~~dg--~ 191 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL--AVDWVHDKLYWTDSGTSRIEVANLDG--A 191 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCE--EEETTTTEEEEEETTTTEEEECBTTS--C
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEE--EEEeCCCeEEEEcCCCCeEEEEeCCC--C
Confidence 457899999755544 555567889999987665433333223344567 66654 455555 3477899888864 2
Q ss_pred CcceEec----cceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-
Q 000177 1587 GPMHSFE----GCKAARFSNSGNLFAALPTETSD-RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL- 1660 (1922)
Q Consensus 1587 k~l~tf~----gh~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa- 1660 (1922)
.....+. ..+.+++.|.+.+|+.+. ... +.|..+++........+. . .-...+-++|+|++..|.
T Consensus 192 ~~~~l~~~~l~~P~giavdp~~g~ly~td--~~~~~~I~r~~~dG~~~~~~~~-~------~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALHPMEGTIYWTD--WGNTPRIEASSMDGSGRRIIAD-T------HLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEE--CSSSCEEEEEETTSCSCEEEEC-S------SCSCEEEEEEEGGGTEEEE
T ss_pred ceEEeecCCCCCCcEEEEEcCCCeEEEec--cCCCCEEEEEeCCCCCcEEEEE-C------CCCCeeeEEEeCCCCEEEE
Confidence 2222222 237899999766555542 333 788888887433322221 0 012223499998665544
Q ss_pred ecc
Q 000177 1661 WNG 1663 (1922)
Q Consensus 1661 Sgg 1663 (1922)
+..
T Consensus 263 aD~ 265 (386)
T 3v65_B 263 VDA 265 (386)
T ss_dssp EET
T ss_pred EEC
Confidence 444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.11 E-value=1.4 Score=55.56 Aligned_cols=109 Identities=10% Similarity=0.202 Sum_probs=67.3
Q ss_pred CEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCCceeeecc---CCCCeeEEEeee-------cCCCc-EEEEecCC---
Q 000177 1511 LLTCITFLG-DSSHIAVGS-HTKELKIFDSNSSSPLESCTS---HQAPVTLVQSHL-------SGETQ-LLLSSSSQ--- 1574 (1922)
Q Consensus 1511 ~Vt~LaFSP-DG~lLASGS-~DGtIkIWDl~tgk~l~tL~g---Hss~VtsLq~af-------SpDG~-lLaSSsDg--- 1574 (1922)
....++|+| ++..|+.+. ..+.|++.|+.++.....+.. .-.....| +| ++++. ++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~i--a~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSI--AFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEE--EECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEE--EEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 355455444 446788899877665443332 12346788 88 99998 44444322
Q ss_pred ----cEEEeccCCCCCC--------cceEeccceeEEEcCCC-CEEEEeecCCCCCeEEEEECC
Q 000177 1575 ----DVHLWNASSIAGG--------PMHSFEGCKAARFSNSG-NLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1575 ----tVkLWDl~t~~gk--------~l~tf~gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.|.+++... .+. .+..+...+.++++|++ .++++- ..++.|..||+.
T Consensus 218 ~~~~~V~~i~r~~-~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd---~~~g~V~r~d~~ 277 (496)
T 3kya_A 218 DESPSVYIIKRNA-DGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS---YEKGQVFRLDLV 277 (496)
T ss_dssp GGEEEEEEEECCT-TSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE---TTTTEEEEECHH
T ss_pred ccCceEEEEecCC-CCceeecccceeeccCCCceEEEEcCCCCeEEEEE---CCCCEEEEEecc
Confidence 255665332 112 22344555889999954 444454 667889999998
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=6.6 Score=46.84 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=80.8
Q ss_pred CeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCC-cceEe-------ccceeEEEcCC---CCEEEEeecC-CCC----
Q 000177 1553 PVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGG-PMHSF-------EGCKAARFSNS---GNLFAALPTE-TSD---- 1616 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk-~l~tf-------~gh~sVaFSPD---G~~LaSgS~~-S~D---- 1616 (1922)
.-+.| +|.|+|+++++..++.|++++. . ++ .+..+ .+...++|+|+ +..|+.+... ..+
T Consensus 30 ~P~~i--a~~pdG~l~V~e~~g~I~~~d~-~--G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSI--APLGGGRYLVTERPGRLVLISP-S--GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEE--EEEETTEEEEEETTTEEEEECS-S--CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEE--EEcCCCeEEEEeCCCEEEEEeC-C--CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 45677 7899999988877899999973 3 33 22221 12377999997 4444443110 012
Q ss_pred CeEEEEECCCC--ce--eeeeccccccccCCCCcceEEEEcCCCCeEeecc----------------EEEEcCC-Cc---
Q 000177 1617 RGILLYDIQTY--QL--EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------------ILWDRRN-SV--- 1672 (1922)
Q Consensus 1617 gtIrIWDlrTg--k~--i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------------rLWDlrt-gk--- 1672 (1922)
..|..|+.... .. ...+-.. . .....|....++|.|+|.++++.+ +||-+.. ++
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~-~-~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDG-I-PGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEE-E-ECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred eEEEEEEECCCCcCcCccEEEEEc-C-CCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 56777776643 11 1111000 0 012345556699999999888743 5666542 22
Q ss_pred -------ceeeeccCCCceEEEEec-CCCEEEEEe
Q 000177 1673 -------PVHRFDQFTDHGGGGFHP-AGNEVIINS 1699 (1922)
Q Consensus 1673 -------~I~kf~gh~~~VsVaFSP-dG~~LASGS 1699 (1922)
.+.. .++.+...++|+| +|..+++-.
T Consensus 183 ~npf~~~~i~a-~G~rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 183 DNPFPNSPIWS-YGHRNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TSSSTTCCEEE-ECCSCCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCcEEE-EccCCcceEEEeCCCCCEEEEec
Confidence 1221 3555666899999 677655543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.09 E-value=5.7 Score=47.12 Aligned_cols=140 Identities=7% Similarity=-0.045 Sum_probs=83.2
Q ss_pred CCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..+..++|++.+..| ++-...+.|..|++..+.....+.........+ ++.+. +.++++ ...+.|.++++..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl--avd~~~g~ly~~d~~~~~I~~~~~dG--- 147 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL--AVDWVHDKLYWTDSGTSRIEVANLDG--- 147 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE--EEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEE--EEecCCCeEEEEcCCCCeEEEEcCCC---
Confidence 457899999765555 455567889999987665444443333445677 66654 455555 3477899999864
Q ss_pred CcceEe-c----cceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1587 GPMHSF-E----GCKAARFSNSGNLFAALPTETSD-RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1587 k~l~tf-~----gh~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
.....+ . ..+.++++|.+..|+.+. ... +.|..+++..... ..+-. ......+-++|+|++..|.
T Consensus 148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td--~~~~~~I~r~~~dG~~~-~~~~~------~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTD--WGNTPRIEASSMDGSGR-RIIAD------THLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEETTTTEEEEEE--CSSSCEEEEEETTSCSC-EESCC------SSCSCEEEEEEETTTTEEE
T ss_pred CceEEEEeCCCCCcceEEEecCcCeEEEec--cCCCCEEEEEeCCCCCc-EEEEE------CCCCCcceEEEeCCCCEEE
Confidence 222222 1 237899999665555442 334 7888888874332 22210 0112223499998665554
Q ss_pred -ecc
Q 000177 1661 -WNG 1663 (1922)
Q Consensus 1661 -Sgg 1663 (1922)
+..
T Consensus 219 ~aD~ 222 (349)
T 3v64_C 219 WVDA 222 (349)
T ss_dssp EEET
T ss_pred EEEC
Confidence 443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.91 E-value=7.8 Score=46.62 Aligned_cols=170 Identities=6% Similarity=0.001 Sum_probs=95.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEe-cCCcEEEeccCCCCCCcce
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSS-SSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSS-sDgtVkLWDl~t~~gk~l~ 1590 (1922)
+|.+..+.+ +|+.+. ...|+.+++........+.+. ..+..+ +|++.+ .++.+- ..+.|..|++.. .....
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~-~~~~gl--~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~~ 152 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL-ENAIAL--DFHHRRELVFWSDVTLDRILRANLNG--SNVEE 152 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSC-SCEEEE--EEETTTTEEEEEETTTTEEEEEETTS--CCEEE
T ss_pred eECCccccc-eeEeec-CccceeeccCCCcEEEEecCC-CccEEE--EEecCCCeEEEEeCCCCcEEEEecCC--CCcEE
Confidence 355555533 444433 357888888766554444433 446778 777654 455553 478899999875 32222
Q ss_pred Eec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-CcceEEEEcCCCCeEe-ec--
Q 000177 1591 SFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-HAYSQIHFSPSDTMLL-WN-- 1662 (1922)
Q Consensus 1591 tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-h~~~vVaFSPdG~lLa-Sg-- 1662 (1922)
.+. ....+++.+.+..|+.+ +...+.|.++++........+. .+ ....-++++|.+..|. +.
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~--d~~~~~I~~~~~dg~~~~~l~~--------~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWT--DSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEE--ETTTTEEEECBTTSCSCEEEEC--------SSCSCEEEEEEETTTTEEEEEECS
T ss_pred EEeCCCCCccEEEEEeCCCeEEEE--cCCCCeEEEEeCCCCceEEeec--------CCCCCCcEEEEEcCCCeEEEeccC
Confidence 221 23678998865555444 2556788888887543322222 11 2223488998766554 33
Q ss_pred --cEEEEcC-CCcceeeec--cCCCceEEEEecCCCEEEEEe
Q 000177 1663 --GILWDRR-NSVPVHRFD--QFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1663 --grLWDlr-tgk~I~kf~--gh~~~VsVaFSPdG~~LASGS 1699 (1922)
++||-+. .|.....+. +...+..++|+|++..|..+.
T Consensus 223 ~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 223 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 2555443 233333332 222344899998777666554
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=94.76 E-value=1.8 Score=54.05 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=87.4
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCcccccccceeeeh
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFT 638 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s~a~tgvS~Clyy 638 (1922)
.+.+.+++..++.+|.. .+..+--.|++.|..|..| ..+...+++.||+..|+.+-+.....+. ....
T Consensus 138 ~vv~~GaIp~Lv~lL~s--------~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~---~~~~ 206 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLAS--------PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGY 206 (510)
T ss_dssp HHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS---CHHH
T ss_pred HHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh---hHHH
Confidence 57788999988888853 2334556788999999887 5677788999999998887654321110 0001
Q ss_pred hcchhhHHHHhhcCC-----hhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hcchhHHHHHhhhcccHHHHHHHHh
Q 000177 639 IGSLQGIMERVCALP-----TDVVHQLVELAIQLLECTQDQARKNAALFFAA-AFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 639 lay~~~aMERvC~lp-----~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
+.....++-.+|... -..+..++..-..||.++++..+.+|+.=++. +..-......+-..+++.+|+.+|.
T Consensus 207 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 112223333344321 23345667777778888888888888765543 2233334444555677888887764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.61 E-value=3.2 Score=47.92 Aligned_cols=179 Identities=12% Similarity=0.191 Sum_probs=106.2
Q ss_pred eeccCCCCeeEEEeeecCCCcEEEE-e-cCCcEEEeccCCCCCCcceEe--cc---ceeEEEcCCCCEEEEeecCCCCCe
Q 000177 1546 SCTSHQAPVTLVQSHLSGETQLLLS-S-SSQDVHLWNASSIAGGPMHSF--EG---CKAARFSNSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1546 tL~gHss~VtsLq~afSpDG~lLaS-S-sDgtVkLWDl~t~~gk~l~tf--~g---h~sVaFSPDG~~LaSgS~~S~Dgt 1618 (1922)
.+.+-...+..| +|+|++..|.+ . .++.|...|.. ++.++++ .+ ...+++.+++.++++. ..++.
T Consensus 21 ~l~g~~~~lSGl--a~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~---E~~~~ 92 (255)
T 3qqz_A 21 EIAGITNNISSL--TWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQFVISD---ERDYA 92 (255)
T ss_dssp ECTTCCSCEEEE--EEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTEEEEEE---TTTTE
T ss_pred ECCCcccCccee--EEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCEEEEEE---CCCCc
Confidence 344555679999 88887665555 3 46777777775 5666655 32 3678898888876765 55688
Q ss_pred EEEEECCCCceeeeecccc--ccccCCCCcceEEEEcCCCCeEeecc-----EEEEcC---CCcceeeecc-------CC
Q 000177 1619 ILLYDIQTYQLEAKLSDTS--VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRR---NSVPVHRFDQ-------FT 1681 (1922)
Q Consensus 1619 IrIWDlrTgk~i~tL~d~s--~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlr---tgk~I~kf~g-------h~ 1681 (1922)
+.++++.....+....... ......+.....++|+|.++.|.+.. .+|.+. ..+.+..+.. +.
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 9999887654322111010 10001122234599999997666444 566654 1122222211 11
Q ss_pred Cce-EEEEecCCCEEEEEe----E--EEecCCCeEEEEEcCC----------Cc-eeEEEccCCCEEEEEE
Q 000177 1682 DHG-GGGFHPAGNEVIINS----E--VWDLRKFRLLRSVPSL----------DQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1682 ~~V-sVaFSPdG~~LASGS----e--IWDLrTgklL~tl~gH----------~~-~sVaFSPdG~~LaSgs 1734 (1922)
... +++|+|....+.+-| . ++|.. ++.+..+.-. .+ ..|+|.++|+ ||.++
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs 241 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS 241 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc
Confidence 123 899999876666656 1 66765 6666655411 12 6999999998 55443
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=94.61 E-value=1.8 Score=51.82 Aligned_cols=156 Identities=12% Similarity=0.020 Sum_probs=85.6
Q ss_pred HHHHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchh
Q 000177 541 EKYCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~ 618 (1922)
+...+.+|+-+... .+....++..+++..++.+|.. .+..+-..|++.|..|..+. .+...+++.|+++.
T Consensus 82 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 153 (450)
T 2jdq_A 82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS--------EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPP 153 (450)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHH
Confidence 44566677666542 3334455677888888887753 23345667888888888764 45666888999999
Q ss_pred hhccCCCc-c--cccccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcch-hHHHH
Q 000177 619 LLAVPRNN-Q--TFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVF-RAIID 694 (1922)
Q Consensus 619 LL~vPR~s-~--a~tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~F-r~il~ 694 (1922)
|+.+-+.+ . .-.....||..|+...+. .....++..++..-+.+|..+++..|.+|+..++.-... .....
T Consensus 154 L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 228 (450)
T 2jdq_A 154 LLQLFSKQNRLTMTRNAVWALSNLCRGKSP-----PPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228 (450)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHCCSSS-----CCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhCCCCC-----CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHH
Confidence 99876631 1 111122233333322100 001122334555556667776777776666555543322 22233
Q ss_pred HhhhcccHHHHHHHH
Q 000177 695 AFDAQDGLQKLLGLL 709 (1922)
Q Consensus 695 ~FD~~dGLrkL~N~i 709 (1922)
.+-..+++..|+++|
T Consensus 229 ~~~~~~~i~~L~~ll 243 (450)
T 2jdq_A 229 AVIDAGVCRRLVELL 243 (450)
T ss_dssp HHHHTTTHHHHHHHT
T ss_pred HHHHcCcHHHHHHHH
Confidence 333345566666544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.45 E-value=3.1 Score=49.56 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---eee----ccCCCCeeEEEeeecCC----CcEEEEe-c-----
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL---ESC----TSHQAPVTLVQSHLSGE----TQLLLSS-S----- 1572 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l---~tL----~gHss~VtsLq~afSpD----G~lLaSS-s----- 1572 (1922)
...+.++|.|+|++|+++...|.|++++.. ++.. ..+ .........| +++|+ +.+.++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gi--a~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDV--VLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEE--EECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeE--EECCCCCCCCEEEEEEeCCCCCC
Confidence 346899999999944555678999999853 3221 111 1123456788 88985 5555552 2
Q ss_pred --CCcEEEeccCCCCCC-----cc-eEec-----cc--eeEEEcCCCCEEEEe
Q 000177 1573 --SQDVHLWNASSIAGG-----PM-HSFE-----GC--KAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1573 --DgtVkLWDl~t~~gk-----~l-~tf~-----gh--~sVaFSPDG~~LaSg 1610 (1922)
...|..|++...... .+ ..+. .| ..+.|.|+|.++++.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 124555655431111 11 1111 13 569999999776665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.43 E-value=18 Score=47.27 Aligned_cols=209 Identities=10% Similarity=0.041 Sum_probs=123.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--------------ccCCCCeeEEEeeecCCCcEEEEecCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--------------TSHQAPVTLVQSHLSGETQLLLSSSSQD 1575 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--------------~gHss~VtsLq~afSpDG~lLaSSsDgt 1575 (1922)
..|+++...++|. |..|+..+-|.+||..++...... .-....|.+| ...++|.+-+...++-
T Consensus 258 ~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i--~~D~~g~lWigt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI--FQDSFNNIWIGTWGGG 334 (781)
T ss_dssp CCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE--EECSSCCEEEEEBSSC
T ss_pred ceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE--EEeCCCCEEEEecCCe
Confidence 5699999888776 556777566888998766532211 1234678998 7788888888777778
Q ss_pred EEEeccCCCCCCcceEe--------------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1576 VHLWNASSIAGGPMHSF--------------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf--------------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
|..|+... .. ...+ ..+.++...++|...+. +.++-|..||..++.... +..+. .
T Consensus 335 l~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig----t~~~Gl~~~~~~~~~~~~-~~~~~---~ 403 (781)
T 3v9f_A 335 INFISNAP--PT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIG----TDGGGINVFENGKRVAIY-NKENR---E 403 (781)
T ss_dssp EEEECSSC--CS-CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEE----EBSSCEEEEETTEEEEEC-C--------
T ss_pred EEEeCCCC--Cc-ceeeccCccccccCCCCCcceEEEEEcCCCCEEEE----eCCCcEEEEECCCCeEEE-ccCCC---C
Confidence 88888765 22 2222 11466777777776554 333458899987654322 21100 1
Q ss_pred CCCCcceEEEEcCCCCeEeec---c-EEEEcCCCcceeeecc---CCCce-EEEEecCCCEEEEEe---EEEecCCCeEE
Q 000177 1642 GRGHAYSQIHFSPSDTMLLWN---G-ILWDRRNSVPVHRFDQ---FTDHG-GGGFHPAGNEVIINS---EVWDLRKFRLL 1710 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLaSg---g-rLWDlrtgk~I~kf~g---h~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL 1710 (1922)
.....+..+...++|.+.+.. | ..||..+++. ..+.. ....+ ++...++|...+... -+||..+++..
T Consensus 404 ~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 404 LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVI 482 (781)
T ss_dssp CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCC
T ss_pred CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEE
Confidence 112344457777788877632 2 6777766643 23321 23345 777777777544432 36777765543
Q ss_pred EEEcCC-------CceeEEEccCCCEEEEE
Q 000177 1711 RSVPSL-------DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1711 ~tl~gH-------~~~sVaFSPdG~~LaSg 1733 (1922)
...... ...++...++|.+.++.
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred ecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 322211 12678888888877765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.73 Score=59.34 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=44.8
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceeeeccCCCCe-eEEEeeecCCCcEEEEec--C-----CcEEEeccC
Q 000177 1512 LTCITFLGDSSHIAVGSH-TKELKIFDSNSSSPLESCTSHQAPV-TLVQSHLSGETQLLLSSS--S-----QDVHLWNAS 1582 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~l~tL~gHss~V-tsLq~afSpDG~lLaSSs--D-----gtVkLWDl~ 1582 (1922)
..++++..+|++++.|+. +..+.+||..+++....-..+.... .++ ...+++++++.|. + ..+.+||..
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~--~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSS--ATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEE--EECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccce--EEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 345788899999999984 4689999987765433221111111 122 3456888888753 3 468888886
Q ss_pred C
Q 000177 1583 S 1583 (1922)
Q Consensus 1583 t 1583 (1922)
+
T Consensus 323 t 323 (656)
T 1k3i_A 323 S 323 (656)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.28 E-value=6.7 Score=51.27 Aligned_cols=209 Identities=11% Similarity=0.085 Sum_probs=127.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec---------cCCCCeeEEEeeecCCCcEEEEecCCcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT---------SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~---------gHss~VtsLq~afSpDG~lLaSSsDgtVkLWD 1580 (1922)
..|+++...++|. |..|+.++-|..|+..++....... -....|.++ ...++|.+.+...++-|.+||
T Consensus 313 ~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i--~~d~~g~lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 313 ASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV--CDDGQGKLWIGTDGGGINVFE 389 (781)
T ss_dssp SCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE--EECTTSCEEEEEBSSCEEEEE
T ss_pred CeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE--EEcCCCCEEEEeCCCcEEEEE
Confidence 5699999998886 6678888889999987654332110 123568888 777888888877667788888
Q ss_pred cCCCCCCcce-----Ee--ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEc
Q 000177 1581 ASSIAGGPMH-----SF--EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1581 l~t~~gk~l~-----tf--~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
..+ +.... .+ ..+.++...++|...+. +.++-+..||..+++... +... ......+..+...
T Consensus 390 ~~~--~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig----t~~~Gl~~~~~~~~~~~~-~~~~----~~~~~~v~~i~~d 458 (781)
T 3v9f_A 390 NGK--RVAIYNKENRELLSNSVLCSLKDSEGNLWFG----TYLGNISYYNTRLKKFQI-IELE----KNELLDVRVFYED 458 (781)
T ss_dssp TTE--EEEECC-----CCCSBEEEEEECTTSCEEEE----ETTEEEEEECSSSCEEEE-CCST----TTCCCCEEEEEEC
T ss_pred CCC--CeEEEccCCCCCCCcceEEEEECCCCCEEEE----eccCCEEEEcCCCCcEEE-eccC----CCCCCeEEEEEEC
Confidence 765 21111 11 12466777777776664 344568999988776433 2210 0112334457777
Q ss_pred CCCCeEeecc---EEEEcCCCcceeeeccC-----CCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcC---CC
Q 000177 1654 PSDTMLLWNG---ILWDRRNSVPVHRFDQF-----TDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPS---LD 1717 (1922)
Q Consensus 1654 PdG~lLaSgg---rLWDlrtgk~I~kf~gh-----~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~g---H~ 1717 (1922)
++|.+.+... ..||..+++..+..... ...+ ++...++|...+... -.||..+++. ..+.. ..
T Consensus 459 ~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~ 537 (781)
T 3v9f_A 459 KNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFC 537 (781)
T ss_dssp TTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCS
T ss_pred CCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCC
Confidence 8887666433 78888776543322211 2445 788888888665543 2567665543 33431 11
Q ss_pred ---ceeEEEccCCCEEEEE
Q 000177 1718 ---QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1718 ---~~sVaFSPdG~~LaSg 1733 (1922)
..++...++|.+.+++
T Consensus 538 ~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 538 SNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp CSCEEEEEECTTSCEEEEE
T ss_pred CCeeEEEEECCCCCEEEEE
Confidence 2678888888877664
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.22 E-value=10 Score=45.53 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=83.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee--ee----ccCCCCeeEEEeeecCC----CcEEEE-e--cCCcE
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE--SC----TSHQAPVTLVQSHLSGE----TQLLLS-S--SSQDV 1576 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~--tL----~gHss~VtsLq~afSpD----G~lLaS-S--sDgtV 1576 (1922)
..-+.++|.|||.++++--..|.|++++..+++... .+ .........| +++|+ +.+.++ + .++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGi--a~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGI--ALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEE--EECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceee--EeccccccCCEEEEEEecCCCCEE
Confidence 567999999999977776668999999876655321 11 2234567888 88885 555554 3 34555
Q ss_pred EEeccCCCC------CCcce---Eec---cc--eeEEEcCCCCEEEEeecCC----------CCCeEEEEECCCCceee-
Q 000177 1577 HLWNASSIA------GGPMH---SFE---GC--KAARFSNSGNLFAALPTET----------SDRGILLYDIQTYQLEA- 1631 (1922)
Q Consensus 1577 kLWDl~t~~------gk~l~---tf~---gh--~sVaFSPDG~~LaSgS~~S----------~DgtIrIWDlrTgk~i~- 1631 (1922)
.-|.+.... ..... .+. .| ..+.|.|||.++++.+..+ ..+.|.-++... +.-.
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~ip~~ 188 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EPAPG 188 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SBCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC-CccCC
Confidence 555554310 01111 121 24 4599999999888763211 123343334332 1000
Q ss_pred -eeccccccccCCCCcceE-EEEcCCCCeEeecc
Q 000177 1632 -KLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1632 -tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg 1663 (1922)
-|. .......+|..+. ++|+|+|.++++..
T Consensus 189 nPf~--~~~i~a~G~RNp~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 189 NPFP--GSPVYSYGHRNVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp CSST--TCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred CCCC--CCeEEeeCCCCcceEEECCCCCEEEEec
Confidence 000 0000113555554 99999998887543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.13 E-value=12 Score=44.24 Aligned_cols=172 Identities=7% Similarity=-0.005 Sum_probs=95.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
.+|.+..+++ +|+.+. ...|+..++........+... ..+..+ .|++.+. ++.+- ..+.|..|++.. ....
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~-~~~~~l--~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~ 108 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL-ENAIAL--DFHHRRELVFWSDVTLDRILRANLNG--SNVE 108 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSC-SCEEEE--EEETTTTEEEEEETTTTEEEEEETTS--CSCE
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCC-CceEEE--EEeccccEEEEEeccCCceEEEecCC--CCce
Confidence 4566666644 444333 345888888665544444433 346788 7776544 44453 478899999875 3222
Q ss_pred eEe----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ec--
Q 000177 1590 HSF----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WN-- 1662 (1922)
Q Consensus 1590 ~tf----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sg-- 1662 (1922)
..+ .....+++.+.+..|+.+ +...+.|.++++........+. ........++++|.+..|. +.
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~--d~~~~~I~~~~~dG~~~~~l~~-------~~l~~P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWT--DSGTSRIEVANLDGAHRKVLLW-------QSLEKPRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEE--ETTTTEEEEEETTSCSCEEEEC-------TTCSCEEEEEEETTTTEEEEEECS
T ss_pred EEEeCCCCCccEEEEecCCCeEEEE--cCCCCeEEEEcCCCCceEEEEe-------CCCCCcceEEEecCcCeEEEeccC
Confidence 222 223678998865555443 2566889999987543322221 0112223489998665444 43
Q ss_pred --cEEEEcC-CCcceeeec--cCCCceEEEEecCCCEEEEEe
Q 000177 1663 --GILWDRR-NSVPVHRFD--QFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1663 --grLWDlr-tgk~I~kf~--gh~~~VsVaFSPdG~~LASGS 1699 (1922)
++||-+. .|.....+. +...+..++|+|++..|..+.
T Consensus 180 ~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 180 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp SSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 2455443 233333332 222334899999777666554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=93.80 E-value=16 Score=44.30 Aligned_cols=138 Identities=7% Similarity=-0.029 Sum_probs=81.4
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCC----CceeeeccCCCCeeEEEeeecC-CCcEEEE-ecCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSSHIA-VGSHTKELKIFDSNSS----SPLESCTSHQAPVTLVQSHLSG-ETQLLLS-SSSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tg----k~l~tL~gHss~VtsLq~afSp-DG~lLaS-SsDgtVkLWDl~ 1582 (1922)
..+..++|++.+..|+ +-...+.|+.+++... .....+...-.....| ++.+ .++++++ ...+.|.+.++.
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl--avD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL--AVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEE--EEETTTTEEEEEETTTTEEEEECTT
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccE--EEEecCCceEEEECCCCeEEEEeCC
Confidence 5688999998665554 4456788999998652 2233333334556778 6665 4555556 357889999987
Q ss_pred CCCCCcceEe-c----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-CcceEEEEcCCC
Q 000177 1583 SIAGGPMHSF-E----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-HAYSQIHFSPSD 1656 (1922)
Q Consensus 1583 t~~gk~l~tf-~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-h~~~vVaFSPdG 1656 (1922)
. .....+ . ..+.+++.|.+.+|+.+.. +..+.|...++........+. .+ ...+-++|+|++
T Consensus 190 g---~~~~~l~~~~~~~P~~iavdp~~g~ly~td~-~~~~~I~~~~~dG~~~~~~~~--------~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 190 G---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVDIYSLVT--------ENIQWPNGITLDLLS 257 (400)
T ss_dssp T---CSEEEEEECSSCCEEEEEEETTTTEEEEEEC-SSSCCEEEEETTSCSCEEEEC--------SSCSCEEEEEEETTT
T ss_pred C---CceEEEEeCCCCCcceEEEecccCeEEEEeC-CCCCEEEEEeCCCCccEEEEE--------CCCCceEEEEEEeCC
Confidence 4 222222 2 2478999996655555421 224678888887433322222 11 222349999877
Q ss_pred CeEee
Q 000177 1657 TMLLW 1661 (1922)
Q Consensus 1657 ~lLaS 1661 (1922)
..|..
T Consensus 258 ~~lY~ 262 (400)
T 3p5b_L 258 GRLYW 262 (400)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 65553
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.31 Score=53.49 Aligned_cols=156 Identities=21% Similarity=0.252 Sum_probs=102.1
Q ss_pred HHHHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHh-hhhhhHHHHhccccchh
Q 000177 541 EKYCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALA-AHRKFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl-~HkKfA~eFV~~gGlq~ 618 (1922)
+..++.+|.-+... .+.-..++..+++..++.+|.. .+..+...+++.|+.|. .+......+++.|+++.
T Consensus 61 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 132 (252)
T 4hxt_A 61 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 132 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 33455555555544 4545566788899998888753 23345678899999999 56788888999999999
Q ss_pred hhccCCCcccc--cccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhc-chhHHHH
Q 000177 619 LLAVPRNNQTF--FGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAF-VFRAIID 694 (1922)
Q Consensus 619 LL~vPR~s~a~--tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf-~Fr~il~ 694 (1922)
|+++=+.+... .....||..|+... +..+.+.. ..++..-+.+|..+++..|.+|+..++.-. .-+....
T Consensus 133 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 206 (252)
T 4hxt_A 133 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIK 206 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98887654322 12333444444422 22222222 135677778889888888888887776543 3566666
Q ss_pred HhhhcccHHHHHHHHh
Q 000177 695 AFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 695 ~FD~~dGLrkL~N~i~ 710 (1922)
.+-..+++..|++++.
T Consensus 207 ~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 207 AIVDAGGVEVLQKLLT 222 (252)
T ss_dssp HHHHTTHHHHHHHGGG
T ss_pred HHHHCCCHHHHHHHHC
Confidence 6666788888877764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=93.71 E-value=5.7 Score=46.51 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=96.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEecCCcEEE-eccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHL-WNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkL-WDl~t~~gk 1587 (1922)
+.+..+.+.+++..++.+ .+|.|.. ..+.|+.-. ....+...+..+ .+.+++.+++.+..+.+.. +|-.-...+
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~--~~~~~~~~~~~g~~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNL--NRSPSGEYVAVSSRGSFYSTWEPGQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEE--EECTTSCEEEEETTSSEEEEECTTCSSCE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEE--EEcCCCcEEEEECCCcEEEEeCCCCCcee
Confidence 457888888777766665 4565422 223344332 224556678888 7888999998887665543 342100011
Q ss_pred cceEe--ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1588 PMHSF--EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1588 ~l~tf--~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
.+..- .....+.+.++++.++.+ .++.+.+++...++....+..+.. ..+.....+.|.+++.+++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~g~~~~~~----~~G~~~~s~~D~G~tW~~~~~~~~---~~~~~~~~v~~~~~~~~~~~g~~g 270 (327)
T 2xbg_A 198 PHNRTTSRRLHNMGFTPDGRLWMIV----NGGKIAFSDPDNSENWGELLSPLR---RNSVGFLDLAYRTPNEVWLAGGAG 270 (327)
T ss_dssp EEECCSSSCEEEEEECTTSCEEEEE----TTTEEEEEETTEEEEECCCBCTTS---SCCSCEEEEEESSSSCEEEEESTT
T ss_pred ECCCCCCCccceeEECCCCCEEEEe----CCceEEEecCCCCCeeEeccCCcc---cCCcceEEEEecCCCEEEEEeCCC
Confidence 11110 123678888988877664 457777764333443332221100 0122344578888888777654
Q ss_pred -EEEEcCCCcceeeecc---CCCce-EEEEecCCCEEEEEe
Q 000177 1664 -ILWDRRNSVPVHRFDQ---FTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1664 -rLWDlrtgk~I~kf~g---h~~~V-sVaFSPdG~~LASGS 1699 (1922)
.++....|+.-..+.. ....+ .+.|.+++..++.|.
T Consensus 271 ~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 271 ALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp CEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred eEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence 3444444443333321 22233 777776666666554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=93.54 E-value=2.2 Score=51.14 Aligned_cols=141 Identities=14% Similarity=0.209 Sum_probs=84.0
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceee-ecc----CCC--CeeEEEeee---cCCCcEEEEec---------
Q 000177 1513 TCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLES-CTS----HQA--PVTLVQSHL---SGETQLLLSSS--------- 1572 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~t-L~g----Hss--~VtsLq~af---SpDG~lLaSSs--------- 1572 (1922)
-+++|.+....|..++ ..++|..|+...+..... +.+ ... .+..| .| .++++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl--~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGL--SLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEE--EESSSSSCCEEEEEEEETTTTCTTS
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEE--EEeccCCCCcEEEEEcccccccccc
Confidence 4789988666666666 899999999976644333 322 111 34677 77 58888888632
Q ss_pred -----CCcEEEeccC---CCCCCcceEec-----------------cceeEEEcCCCCEEEEeecCCCC-CeEEEEECCC
Q 000177 1573 -----SQDVHLWNAS---SIAGGPMHSFE-----------------GCKAARFSNSGNLFAALPTETSD-RGILLYDIQT 1626 (1922)
Q Consensus 1573 -----DgtVkLWDl~---t~~gk~l~tf~-----------------gh~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrT 1626 (1922)
+..|..||+. + ++.+.... +.+.++..++|+..+++ +.- +.|..+|...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~t--g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~---s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSEN--SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF---ALGMPAIARVSADG 168 (334)
T ss_dssp CCSSSCCEEEEEESSCCTT--CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE---EESSCEEEEECTTS
T ss_pred cccCCCCEEEEEcCCcCCC--CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC---CCCCCeEEEEeCCC
Confidence 5678899998 6 55554332 24678999999998887 333 5555555442
Q ss_pred CceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1627 YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1627 gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
. .+..+.-.. .........+-++++|+|++|+..
T Consensus 169 ~-~~~~~~~~~-~~~~~~~G~nGIv~~pdg~~Liv~ 202 (334)
T 2p9w_A 169 K-TVSTFAWES-GNGGQRPGYSGITFDPHSNKLIAF 202 (334)
T ss_dssp C-CEEEEEECC-CCSSSCCSCSEEEEETTTTEEEEE
T ss_pred C-EEeeeeecC-CCcccccCcceEEEeCCCCEEEEE
Confidence 2 222221000 000011222347888888776643
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.58 Score=50.43 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=98.5
Q ss_pred HHHHHhhhch-hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhh-hhhhHHHHhccccchhhh
Q 000177 543 YCIQCLETLG-EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAA-HRKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 543 ~~l~~L~~lG-EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~-HkKfA~eFV~~gGlq~LL 620 (1922)
..+.+|.-+. .-.+.-..+++.+++..++.+|.. .+..+...|++.|+.|.. .......+++.||++.|+
T Consensus 31 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (210)
T 4db6_A 31 SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (210)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence 3444444444 223444467788899988888863 123456789999999986 456778899999999998
Q ss_pred ccCCCcccc--cccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcch-hHHHHHh
Q 000177 621 AVPRNNQTF--FGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVF-RAIIDAF 696 (1922)
Q Consensus 621 ~vPR~s~a~--tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~F-r~il~~F 696 (1922)
.+=+..... .....+|..|+... +..+.+.. ..+|..-+.+|..++...+.+|+..++.-... +.....+
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 176 (210)
T 4db6_A 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH------cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 876554211 12222333444221 21122111 13567777788888899999998877655444 6666777
Q ss_pred hhcccHHHHHHHHh
Q 000177 697 DAQDGLQKLLGLLN 710 (1922)
Q Consensus 697 D~~dGLrkL~N~i~ 710 (1922)
-..+++..|++++.
T Consensus 177 ~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 177 KEAGALEKLEQLQS 190 (210)
T ss_dssp HHTTHHHHHHHGGG
T ss_pred HHCCCHHHHHHHHh
Confidence 77788888888764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=16 Score=42.40 Aligned_cols=147 Identities=7% Similarity=-0.084 Sum_probs=83.2
Q ss_pred CCEEEEEEcCCCCEE-EEEeCCCcEEEEECCC---CCcee-eeccCCCCeeEEEeeecC-CCcEEEE-ecCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSSHI-AVGSHTKELKIFDSNS---SSPLE-SCTSHQAPVTLVQSHLSG-ETQLLLS-SSSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~t---gk~l~-tL~gHss~VtsLq~afSp-DG~lLaS-SsDgtVkLWDl~ 1582 (1922)
.....++|++++..| ++-...+.|..+++.. +.... .+...-.....| ++.+ .++++++ ...+.|.++++.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl--avd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL--AVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE--EEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE--EEeecCCeEEEEECCCCEEEEEeCC
Confidence 457899999866555 4555668999999876 12222 233222445778 6665 4455556 457889999986
Q ss_pred CCCCCcceEe-c----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1583 SIAGGPMHSF-E----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1583 t~~gk~l~tf-~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
. .....+ . ..+.++++|.+.+++.+.. +..+.|..+++.. .....+.. ..-...+-++|+|++.
T Consensus 108 g---~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~-~~~~~I~~~~~dG-~~~~~~~~------~~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 108 G---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNG-VDIYSLVT------ENIQWPNGITLDLLSG 176 (316)
T ss_dssp S---SSEEEEEECTTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTS-CCEEEEEC------SSCSCEEEEEEETTTT
T ss_pred C---CceEEEEECCCCCcceEEeCCCCCEEEEEcc-CCCCeEEEEcCCC-CCeEEEEE------CCCCCceEEEEeccCC
Confidence 4 222222 2 2378999996655544421 1236788888763 33333320 0112233499998766
Q ss_pred eEe-ecc-----EEEEcC
Q 000177 1658 MLL-WNG-----ILWDRR 1669 (1922)
Q Consensus 1658 lLa-Sgg-----rLWDlr 1669 (1922)
.|. +.. ..+|+.
T Consensus 177 ~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCeEEEEecC
Confidence 554 443 455654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.76 E-value=1.1 Score=54.87 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=78.9
Q ss_pred eccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eEeecc------
Q 000177 1592 FEGCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWNG------ 1663 (1922)
Q Consensus 1592 f~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSgg------ 1663 (1922)
|.....++|+| ++..|+.+. .. +.|+.+|+.++....... .......++|+++|+ ++++..
T Consensus 136 ~~~P~~lavdp~~~g~Lyv~d--~~-~~I~~id~~~~~v~~~~~--------~~~~P~~ia~d~~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNHLYLVG--EQ-HPTRLIDFEKEYVSTVYS--------GLSKVRTICWTHEADSMIITNDQNNNDR 204 (430)
T ss_dssp CSCCCEEEEETTEEEEEEEEE--BT-EEEEEEETTTTEEEEEEC--------CCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred CCCCCEEEECCCCCCeEEEEe--CC-CcEEEEECCCCEEEEEec--------CCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence 44557899998 455555542 22 789999998766543332 122333499999999 555542
Q ss_pred --EEEEcCCCcce--eeeccCCCceEEEEec-CCCEEEEEe---E--EEecCCCeEEE--EEcCC-CceeEEEccCCCEE
Q 000177 1664 --ILWDRRNSVPV--HRFDQFTDHGGGGFHP-AGNEVIINS---E--VWDLRKFRLLR--SVPSL-DQTTITFNARGDVI 1730 (1922)
Q Consensus 1664 --rLWDlrtgk~I--~kf~gh~~~VsVaFSP-dG~~LASGS---e--IWDLrTgklL~--tl~gH-~~~sVaFSPdG~~L 1730 (1922)
.+|-...+... ..+.....+..++++| +|..+++.. + .|+..++.... .+... ..+.++|+|+|++|
T Consensus 205 ~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 205 PNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred ceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 34444444332 3444444455889999 676655543 3 55666554422 22222 23789999999988
Q ss_pred EEEE
Q 000177 1731 YAIL 1734 (1922)
Q Consensus 1731 aSgs 1734 (1922)
+.+.
T Consensus 285 yv~d 288 (430)
T 3tc9_A 285 YIVV 288 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8763
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.18 Score=55.99 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=101.9
Q ss_pred HHHHHHHhhhchh-HHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhH-HHHhccccchh
Q 000177 541 EKYCIQCLETLGE-YVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFA-ALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lGE-YqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA-~eFV~~gGlq~ 618 (1922)
+...+.+|.-+.. ..+.-..++..+++..++.+|.. .+..+...+++.|+.|..+.... ..+++.|+++.
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (252)
T 4db8_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHH
Confidence 3445555555554 34445567788899998888753 23355678899999999998888 88999999999
Q ss_pred hhccCCCccc--ccccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhc-chhHHHH
Q 000177 619 LLAVPRNNQT--FFGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAF-VFRAIID 694 (1922)
Q Consensus 619 LL~vPR~s~a--~tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf-~Fr~il~ 694 (1922)
|+++=+.+.. -.....||..|+... ...+.+.. ..+|..-+.+|..++..-+.+|+..++.-. ..+....
T Consensus 143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 216 (252)
T 4db8_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9887655421 123334444555422 22222221 235667778888888888988887777443 4455555
Q ss_pred HhhhcccHHHHHHHHh
Q 000177 695 AFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 695 ~FD~~dGLrkL~N~i~ 710 (1922)
.+-..+++..|++++.
T Consensus 217 ~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 217 AVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHTTHHHHHHTTTT
T ss_pred HHHHCCcHHHHHHHhC
Confidence 6666677777776653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.34 E-value=2.7 Score=50.60 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=82.4
Q ss_pred CCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc--ceEec--------cceeEEEcCC----CCEEEEeecCCCC
Q 000177 1552 APVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP--MHSFE--------GCKAARFSNS----GNLFAALPTETSD 1616 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~--l~tf~--------gh~sVaFSPD----G~~LaSgS~~S~D 1616 (1922)
..-+.| +|.|||.++++.. .+.|++++... ++. +..+. +...++|+|+ +..+++-+ ...+
T Consensus 32 ~~P~~i--a~~pdG~llVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt-~~~~ 106 (347)
T 3das_A 32 NSPWGL--APLPGGDLLVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT-SASD 106 (347)
T ss_dssp SSEEEE--EECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE-CSSS
T ss_pred CCceEE--EEcCCCcEEEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe-cCCC
Confidence 445788 8899999999987 89999998654 322 22221 2367999995 44444321 1234
Q ss_pred CeEEEEECCCCc--------eeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------------EEEEcCC-C
Q 000177 1617 RGILLYDIQTYQ--------LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------------ILWDRRN-S 1671 (1922)
Q Consensus 1617 gtIrIWDlrTgk--------~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------------rLWDlrt-g 1671 (1922)
+.|.-|....+. ....+.. . .....|....+.|.|+|.++++.| +||-+.. +
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~--~-p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRG--I-PKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEE--E-CCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEc--C-CCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 556666655421 1111110 0 012356666799999999888743 6776652 2
Q ss_pred c----------ceeeeccCCCceEEEEecCCCEEEEE
Q 000177 1672 V----------PVHRFDQFTDHGGGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1672 k----------~I~kf~gh~~~VsVaFSPdG~~LASG 1698 (1922)
+ .+.. .++.+...++|+|+|...++-
T Consensus 184 ~ip~~nPf~~~~i~a-~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 184 EPAPGNPFPGSPVYS-YGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp SBCTTCSSTTCCEEE-BCCSBCCEEEECTTCCEEEEE
T ss_pred CccCCCCCCCCeEEe-eCCCCcceEEECCCCCEEEEe
Confidence 2 1222 366667789999988765543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.32 E-value=14 Score=44.02 Aligned_cols=143 Identities=8% Similarity=0.109 Sum_probs=76.6
Q ss_pred CeeEEEeeecCCCc-EEEEecCCcEEEeccCCCCCCcceEe-----c---cceeEEEcCC----CCEEEEeecCCC----
Q 000177 1553 PVTLVQSHLSGETQ-LLLSSSSQDVHLWNASSIAGGPMHSF-----E---GCKAARFSNS----GNLFAALPTETS---- 1615 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~-lLaSSsDgtVkLWDl~t~~gk~l~tf-----~---gh~sVaFSPD----G~~LaSgS~~S~---- 1615 (1922)
.-+.| +|.|+|+ ++++...+.|++++........+..+ . +...++|+|+ +..+++-+....
T Consensus 19 ~P~~i--~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWAL--AFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEE--EECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEE--EEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34677 8899999 88887789999987532101111111 1 2367999995 444444211111
Q ss_pred CCeEEEEECCCC--c--eeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------------EEEEcCC-Cc--
Q 000177 1616 DRGILLYDIQTY--Q--LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------------ILWDRRN-SV-- 1672 (1922)
Q Consensus 1616 DgtIrIWDlrTg--k--~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------------rLWDlrt-gk-- 1672 (1922)
...|..|+...+ . ....+-..........|....+.|.|+|.++++.+ +||-+.. ++
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666666432 1 11111100000011245555699999998888742 5666542 22
Q ss_pred -----------ceeee-ccCCCceEEEEec-CCCEEEE
Q 000177 1673 -----------PVHRF-DQFTDHGGGGFHP-AGNEVII 1697 (1922)
Q Consensus 1673 -----------~I~kf-~gh~~~VsVaFSP-dG~~LAS 1697 (1922)
....+ .++.+...++|+| +|...++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 11112 2455566899999 5655554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=92.25 E-value=4.7 Score=49.57 Aligned_cols=108 Identities=8% Similarity=0.074 Sum_probs=63.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCCce--eeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEecc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHT---KE-LKIFDSNSSSPL--ESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWNA 1581 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~D---Gt-IkIWDl~tgk~l--~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWDl 1581 (1922)
.....++|+++|+++++.... .. +..++.. +... ..+. .-.....+ ++++ ++.++++. .++.|+.+|.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~-~~~~P~gi--avd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLSLC-NARGAKTC--AVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEEEE-ECSSBCCC--EECTTTCCEEECBTTCSEEEEECT
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECC-CCeecccccc-ccCCCCEE--EEeCCCCeEEEEECCCCEEEEEEC
Confidence 568999999999944444321 12 2233322 2111 1121 12233456 6788 77777774 4788999998
Q ss_pred CCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1582 SSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1582 ~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.+ +.....+.. ...++|+|++++|+.+ +...+.|+.+|..
T Consensus 258 ~~--g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva--d~~~~~I~~~~~d 303 (433)
T 4hw6_A 258 AT--GTLTEEEVMMDTKGSNFHIVWHPTGDWAYII--YNGKHCIYRVDYN 303 (433)
T ss_dssp TT--CCEEEEEEECSCCSSCEEEEECTTSSEEEEE--ETTTTEEEEEEBC
T ss_pred CC--CeEEEEEeccCCCCCcccEEEeCCCCEEEEE--eCCCCEEEEEeCC
Confidence 75 443122211 2469999999965554 2567889998865
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=13 Score=44.94 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=85.0
Q ss_pred cCCcEEEeccCCCCCCcc-eEecc--------c-eeEEEcC--CCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1572 SSQDVHLWNASSIAGGPM-HSFEG--------C-KAARFSN--SGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l-~tf~g--------h-~sVaFSP--DG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
.+|.|.+||..+...+.. ..+.+ + ..+.+.+ ++. +|+.+.....+.+|.+|++..+....++-....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 478899999874212211 12222 1 4566655 454 444443333467888988875432222210000
Q ss_pred cccCCCCcceEEEEcCCCCeEeecc--------------------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEE
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWNG--------------------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSgg--------------------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASG 1698 (1922)
...-...+.+.+.++|.+++++. .+|-+..++......+......++|+|||++|..+
T Consensus 161 --g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYva 238 (355)
T 3sre_A 161 --HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA 238 (355)
T ss_dssp --CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred --cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEE
Confidence 00122344588999998766532 45554444322223333344489999999988777
Q ss_pred e----E--EEecC-CCeE--EEEEcCCCc--eeEEEcc-CCCEEEEE
Q 000177 1699 S----E--VWDLR-KFRL--LRSVPSLDQ--TTITFNA-RGDVIYAI 1733 (1922)
Q Consensus 1699 S----e--IWDLr-Tgkl--L~tl~gH~~--~sVaFSP-dG~~LaSg 1733 (1922)
. + .|++. .+++ .+.+. ... -.+++.+ +|++.+++
T Consensus 239 dt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 239 ELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred eCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence 6 3 45664 2332 22332 222 5889999 59987766
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.48 Score=52.53 Aligned_cols=155 Identities=16% Similarity=0.143 Sum_probs=100.4
Q ss_pred HHHHHHhh-hchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhh-hhhhHHHHhccccchhh
Q 000177 542 KYCIQCLE-TLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAA-HRKFAALFVDRGGMQKL 619 (1922)
Q Consensus 542 ~~~l~~L~-~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~-HkKfA~eFV~~gGlq~L 619 (1922)
+..+++|. -+....+....++..+++..++.+|.. .+..+...|++.|..|.. .......+++.||++.|
T Consensus 30 ~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 101 (252)
T 4db8_A 30 LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 33444442 233344445567788888888887753 123467789999999998 57888999999999999
Q ss_pred hccCCCccc--ccccceeeehhcchhhHH-HHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhc-chhHHHHH
Q 000177 620 LAVPRNNQT--FFGLSSCLFTIGSLQGIM-ERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAF-VFRAIIDA 695 (1922)
Q Consensus 620 L~vPR~s~a--~tgvS~Clyylay~~~aM-ERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf-~Fr~il~~ 695 (1922)
+.+=+.+.. -.....+|..|+...... +.+... ..|..-+.+|..++...|.+|+..++.-. ......+.
T Consensus 102 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC------CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 887665421 112233444444443332 222211 36777788899888888888887766443 35566666
Q ss_pred hhhcccHHHHHHHHh
Q 000177 696 FDAQDGLQKLLGLLN 710 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~ 710 (1922)
+-..+++..|++++.
T Consensus 176 ~~~~~~i~~L~~ll~ 190 (252)
T 4db8_A 176 VIDAGALPALVQLLS 190 (252)
T ss_dssp HHHTTCHHHHHHGGG
T ss_pred HHHCCCHHHHHHHHC
Confidence 666788998888774
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.73 E-value=30 Score=45.98 Aligned_cols=189 Identities=5% Similarity=-0.107 Sum_probs=101.1
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----CceeeeccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSS-HIAVGSHTKELKIFDSNSS----SPLESCTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tg----k~l~tL~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLWDl~ 1582 (1922)
..+..++|++.+. ++++-...+.|+.+++... .....+...-.....| ++...+ +++++ ...+.|.+.++.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL--AvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL--AVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE--EEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee--eeeecCCcEEEEecCCCeEEEEeCC
Confidence 5678999998555 4455556788999998753 2233333334556678 566555 45555 357889999987
Q ss_pred CCCCCcceEec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1583 SIAGGPMHSFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1583 t~~gk~l~tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
. ....++- ..+.|++.|.+.+|+.+.. +..+.|...++........+. . .-....-+++++.+.
T Consensus 502 G---~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~-g~~~~I~~~~~dG~~~~~lv~-~------~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 502 G---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVDIYSLVT-E------NIQWPNGITLDLLSG 570 (791)
T ss_dssp S---SSEEEEEECTTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCCEEEEEC-S------SCSCEEEEEEETTTT
T ss_pred C---CeEEEEEeCCCCCcceEEEecCCCCEEEecC-CCCCeEEEEecCCCceEEEEe-C------CCCCceEEEEecCCC
Confidence 4 3333332 2378999997555554421 223678888887443332222 0 012223399997665
Q ss_pred eEe-ecc---EEEEcC-CCcceeeec-c---CCCceEEEEecCCCEEEEEe----EEE--ecCCCeEEEEE
Q 000177 1658 MLL-WNG---ILWDRR-NSVPVHRFD-Q---FTDHGGGGFHPAGNEVIINS----EVW--DLRKFRLLRSV 1713 (1922)
Q Consensus 1658 lLa-Sgg---rLWDlr-tgk~I~kf~-g---h~~~VsVaFSPdG~~LASGS----eIW--DLrTgklL~tl 1713 (1922)
.|. +.. +||-+. .|...+.+. . ....+.+++. +.+|+... .|| |..+++.+.++
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 554 433 444443 233333332 2 2233466653 33444333 344 33455444444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=91.45 E-value=25 Score=41.01 Aligned_cols=203 Identities=7% Similarity=0.037 Sum_probs=104.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec---cCCCCeeEEEeeecCCCcEEEEecCCcE-EEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT---SHQAPVTLVQSHLSGETQLLLSSSSQDV-HLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~---gHss~VtsLq~afSpDG~lLaSSsDgtV-kLWDl~t~~ 1585 (1922)
..+.++.|++ +..++ ++..+.|.. ..+.|+.-.... .+...+..| .+.+++.+++.+.++.| +-+|-
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~g~v~~S~Dg---- 150 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLI--KALGNGSAEMITNVGAIYRTKDS---- 150 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEE--EEEETTEEEEEETTCCEEEESST----
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEE--EEECCCCEEEEeCCccEEEEcCC----
Confidence 5688999986 44444 456665544 333344333222 234557777 66667788877776654 33332
Q ss_pred CCcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEEC--CCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1586 GGPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDI--QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1586 gk~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDl--rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
++.-... .....+.|.+++.+++.+ ...+..+-+|- .+.+.+... .......+.+.+++.+
T Consensus 151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g---~~G~~~~S~d~gG~tW~~~~~~---------~~~~~~~~~~~~~g~~ 218 (327)
T 2xbg_A 151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVS---SRGSFYSTWEPGQTAWEPHNRT---------TSRRLHNMGFTPDGRL 218 (327)
T ss_dssp TSSEEEEECSCCCCEEEEEECTTSCEEEEE---TTSSEEEEECTTCSSCEEEECC---------SSSCEEEEEECTTSCE
T ss_pred CCCCEEeecCCCcceEEEEEcCCCcEEEEE---CCCcEEEEeCCCCCceeECCCC---------CCCccceeEECCCCCE
Confidence 2211111 123678899998888776 33344444442 232222110 1223344778888887
Q ss_pred Eeecc--EEEEc--CCCcceeeecc----CCCce-EEEEecCCCEEEEEeE--E-EecCCCeEEEEEcC---C-Cc-eeE
Q 000177 1659 LLWNG--ILWDR--RNSVPVHRFDQ----FTDHG-GGGFHPAGNEVIINSE--V-WDLRKFRLLRSVPS---L-DQ-TTI 1721 (1922)
Q Consensus 1659 LaSgg--rLWDl--rtgk~I~kf~g----h~~~V-sVaFSPdG~~LASGSe--I-WDLrTgklL~tl~g---H-~~-~sV 1721 (1922)
++.+. .++-. ..++.-..+.. ....+ .+.|.|++..++++.. + +....++.-..+.. + .. ..|
T Consensus 219 ~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v 298 (327)
T 2xbg_A 219 WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKI 298 (327)
T ss_dssp EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEE
T ss_pred EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEE
Confidence 76543 33322 11322111211 11234 7889998888887762 4 33333433333331 1 12 678
Q ss_pred EEccCCCEEEEE
Q 000177 1722 TFNARGDVIYAI 1733 (1922)
Q Consensus 1722 aFSPdG~~LaSg 1733 (1922)
.|.+++.+++++
T Consensus 299 ~~~~~~~~~~~G 310 (327)
T 2xbg_A 299 LFFSPDQGFILG 310 (327)
T ss_dssp EEEETTEEEEEC
T ss_pred EEECCCceEEEc
Confidence 887666655554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.11 E-value=39 Score=44.99 Aligned_cols=159 Identities=8% Similarity=-0.021 Sum_probs=89.0
Q ss_pred CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCCCC--CCcceEec----cceeEEE
Q 000177 1529 HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASSIA--GGPMHSFE----GCKAARF 1600 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t~~--gk~l~tf~----gh~sVaF 1600 (1922)
....|+..++........+.. ...+..| .|++. +.++++. ..+.|+.+++.... +.....+. ....+++
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl--~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPN-LRNVVAL--DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECS-CSSEEEE--EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred cccceeEeeccCCcceeeecC-CCceEEE--eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 345688888876655444433 4556778 67764 4455553 47789888886410 01122222 2367899
Q ss_pred cCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eEeecc----EEEEcC-CCcce
Q 000177 1601 SNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWNG----ILWDRR-NSVPV 1674 (1922)
Q Consensus 1601 SPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSgg----rLWDlr-tgk~I 1674 (1922)
.+.++.|+.+ +...+.|.+.++........+. . .......|+++|.+. ++++.. +||-+. .|...
T Consensus 479 D~~~~~LY~t--D~~~~~I~v~~ldG~~~~~l~~-~------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 479 DWIHSNIYWT--DSVLGTVSVADTKGVKRKTLFR-E------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549 (791)
T ss_dssp ETTTTEEEEE--ETTTTEEEEEETTSSSEEEEEE-C------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred eecCCcEEEE--ecCCCeEEEEeCCCCeEEEEEe-C------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence 9877655554 3667899999998544332222 0 111223489998754 444441 555444 24433
Q ss_pred eeecc--CCCceEEEEecCCCEEEEEe
Q 000177 1675 HRFDQ--FTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1675 ~kf~g--h~~~VsVaFSPdG~~LASGS 1699 (1922)
..+.. ...+..+++.+.+..|+.+.
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 33322 22344899998777666554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=90.93 E-value=16 Score=42.83 Aligned_cols=140 Identities=8% Similarity=-0.016 Sum_probs=81.1
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecC-CCcEEEE-ecCCcEEEeccCCCCC
Q 000177 1511 LLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSG-ETQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSp-DG~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
.+..++|++.+. +.++-...+.|..+++..+.... .+...-.....+ ++.+ .+.++.+ ...+.|.++++..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl--avd~~~g~ly~~d~~~~~I~~~~~dG--- 110 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL--ACDWLGEKLYWTDSETNRIEVSNLDG--- 110 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE--EEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE--EEEcCCCeEEEEECCCCEEEEEECCC---
Confidence 366889998544 55565677889999987664322 222222345667 5665 4555566 3577899999864
Q ss_pred CcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-
Q 000177 1587 GPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL- 1660 (1922)
Q Consensus 1587 k~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa- 1660 (1922)
.....+ ...+.+++.|.+.+|+.+.. +..+.|..+++.... ...+-.. .-...+-++|+|++..|.
T Consensus 111 ~~~~~l~~~~~~~P~giavdp~~g~ly~td~-~~~~~I~r~~~dG~~-~~~~~~~------~l~~Pnglavd~~~~~lY~ 182 (318)
T 3sov_A 111 SLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSS-RFIIINS------EIYWPNGLTLDYEEQKLYW 182 (318)
T ss_dssp CSCEEEECSSCSSEEEEEEEGGGTEEEEEEC-SSSCEEEEEETTSCS-CEEEECS------SCSCEEEEEEETTTTEEEE
T ss_pred CcEEEEEeCCCCCccEEEEeCCCCEEEEEec-CCCCEEEEEEcCCCC-eEEEEEC------CCCCccEEEEeccCCEEEE
Confidence 222222 12378999987555555421 235778888876432 2222100 012223499999665544
Q ss_pred ecc
Q 000177 1661 WNG 1663 (1922)
Q Consensus 1661 Sgg 1663 (1922)
+..
T Consensus 183 aD~ 185 (318)
T 3sov_A 183 ADA 185 (318)
T ss_dssp EET
T ss_pred EEC
Confidence 444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.87 E-value=25 Score=44.38 Aligned_cols=134 Identities=8% Similarity=0.074 Sum_probs=71.0
Q ss_pred CeeEEEeeecCC--CcEEEEec-CCcEEEeccCCCCCCcceEe--------ccceeEEE-------cCCCCEEEEeecCC
Q 000177 1553 PVTLVQSHLSGE--TQLLLSSS-SQDVHLWNASSIAGGPMHSF--------EGCKAARF-------SNSGNLFAALPTET 1614 (1922)
Q Consensus 1553 ~VtsLq~afSpD--G~lLaSSs-DgtVkLWDl~t~~gk~l~tf--------~gh~sVaF-------SPDG~~LaSgS~~S 1614 (1922)
....| +|+|. ++++++.. .+.|++.|+.. +. +.++ ...+.++| ++++++|+.+....
T Consensus 140 ~p~~l--a~dp~~~~~Lyv~~~~~~~i~~ID~~~--~~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRL--AFDPLNKDHLYICYDGHKAIQLIDLKN--RM-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEE--EEETTEEEEEEEEEETEEEEEEEETTT--TE-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEE--EEccCCCCEEEEEECCCCeEEEEECCC--CE-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 34567 77873 45555533 45688888875 33 3222 12478999 99999666652221
Q ss_pred -C---CCeEEEEECCC-Ccee-----eeeccccccccCCCCcceEEEEcCCC-CeEeecc-----EEEEcC-------CC
Q 000177 1615 -S---DRGILLYDIQT-YQLE-----AKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG-----ILWDRR-------NS 1671 (1922)
Q Consensus 1615 -~---DgtIrIWDlrT-gk~i-----~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg-----rLWDlr-------tg 1671 (1922)
. ...|.+++... +... ..+. . ..|. ..++++|++ .++++.. ..||+. ++
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-----~--~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA-----A--YKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEE-----E--ESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred CCcccCceEEEEecCCCCceeecccceeec-----c--CCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 0 12366666443 2221 1221 0 0122 237889954 5455443 677776 44
Q ss_pred cc-----------eee-eccC--CCceEEEEecCCCEEEEEe
Q 000177 1672 VP-----------VHR-FDQF--TDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1672 k~-----------I~k-f~gh--~~~VsVaFSPdG~~LASGS 1699 (1922)
.. ... +... .....++|+|+|++|..+.
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 43 112 2111 2234899999999655553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=90.70 E-value=33 Score=41.45 Aligned_cols=113 Identities=5% Similarity=-0.064 Sum_probs=74.1
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEe-c-CCcEEEeccCCCC
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSS-S-SQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSS-s-DgtVkLWDl~t~~ 1585 (1922)
.....+++.+ .+++.++-...+.|.+.+++.......+...-.....| ++.|.+ .++.+- . .+.|...++..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~i--avdp~~g~ly~td~~~~~~I~~~~~dG-- 234 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI--VVDPVHGFMYWTDWGTPAKIKKGGLNG-- 234 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEE--EEETTTTEEEEEECSSSCCEEEEETTS--
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceE--EEecccCeEEEEeCCCCCEEEEEeCCC--
Confidence 4578899998 45555566677899999987554433334334456788 788754 444553 2 46788888763
Q ss_pred CCcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1586 GGPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1586 gk~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
.....+ ...+.++|++++..|+.+ +...+.|..+|+.....
T Consensus 235 -~~~~~~~~~~l~~P~glavd~~~~~lY~a--D~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 235 -VDIYSLVTENIQWPNGITLDLLSGRLYWV--DSKLHSISSIDVNGGNR 280 (400)
T ss_dssp -CSCEEEECSSCSCEEEEEEETTTTEEEEE--ETTTTEEEEEETTSCCC
T ss_pred -CccEEEEECCCCceEEEEEEeCCCEEEEE--ECCCCEEEEEeCCCCcc
Confidence 333332 223789999987777666 36678999999875433
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=89.46 E-value=15 Score=44.47 Aligned_cols=163 Identities=15% Similarity=0.256 Sum_probs=93.8
Q ss_pred EEEEecCCcEEEeccCCCCCCcceEecc--ceeEEEcC----CCCE--EEEeecCCC--CCeEEEEECC--CCceeeeec
Q 000177 1567 LLLSSSSQDVHLWNASSIAGGPMHSFEG--CKAARFSN----SGNL--FAALPTETS--DRGILLYDIQ--TYQLEAKLS 1634 (1922)
Q Consensus 1567 lLaSSsDgtVkLWDl~t~~gk~l~tf~g--h~sVaFSP----DG~~--LaSgS~~S~--DgtIrIWDlr--Tgk~i~tL~ 1634 (1922)
+|.+...+-+.+||+ + ++.++.+.. .+.+..-| .|+. ++.++. .. +++|.+|++. ++. +..+.
T Consensus 43 ii~t~k~~gL~Vydl-~--G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-D--GKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp EEEEETTTEEEEEET-T--SCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEECTTTCC-EEECS
T ss_pred EEEEcCCCCEEEEcC-C--CcEEEEccCCCcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEECCCCCc-eeecc
Confidence 444456788999999 4 788887763 24444444 3333 333322 34 6889999773 433 44442
Q ss_pred cccccccCCC-CcceEEEE--cCC-CC-eEeecc-----EEEEcC-------CCcceeeeccCCCceEEEEecCCCEEEE
Q 000177 1635 DTSVNLTGRG-HAYSQIHF--SPS-DT-MLLWNG-----ILWDRR-------NSVPVHRFDQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1635 d~s~~~~~~g-h~~~vVaF--SPd-G~-lLaSgg-----rLWDlr-------tgk~I~kf~gh~~~VsVaFSPdG~~LAS 1697 (1922)
...... ..+ ....-+|+ +|. +. +++... ..|++. +++.+++|....+.-.|...+...+|..
T Consensus 118 ~~~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred ccccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence 110000 001 11111555 674 44 333333 566662 3467888877665558999998888988
Q ss_pred EeE---EEecC-------CCeEEEEEc-CC---CceeEEE--ccCCC-EEEEEEc
Q 000177 1698 NSE---VWDLR-------KFRLLRSVP-SL---DQTTITF--NARGD-VIYAILR 1735 (1922)
Q Consensus 1698 GSe---IWDLr-------TgklL~tl~-gH---~~~sVaF--SPdG~-~LaSgs~ 1735 (1922)
+-+ ||-+. +++++..+. ++ +...+++ .++|+ +|++++.
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ 251 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ 251 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence 884 88765 356776664 21 1245655 66777 7777754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=89.04 E-value=2 Score=56.14 Aligned_cols=140 Identities=7% Similarity=-0.083 Sum_probs=76.5
Q ss_pred CEEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CCceeeeccCCCCeeEEEeeecC-CCcEEEE-ecCCcEEEeccCC
Q 000177 1511 LLTCITFLGDSSHIAVG-SHTKELKIFDSNS----SSPLESCTSHQAPVTLVQSHLSG-ETQLLLS-SSSQDVHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASG-S~DGtIkIWDl~t----gk~l~tL~gHss~VtsLq~afSp-DG~lLaS-SsDgtVkLWDl~t 1583 (1922)
.+..++|++.+..|+.. ...+.|+.+++.. ......+...-.....| ++.+ .++++++ ...+.|.++++..
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl--avD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL--AVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE--ECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE--EEEeeCCcEEEEeccCCeEEEEecCC
Confidence 45688999876666555 4567899999875 22222222112234556 5553 4555555 4578899999874
Q ss_pred CCCCcceEe-c----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-
Q 000177 1584 IAGGPMHSF-E----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT- 1657 (1922)
Q Consensus 1584 ~~gk~l~tf-~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~- 1657 (1922)
..+..+ . ..+.+++.|.+.+|+.+.. +..+.|..+++.... ...+... .....+-++|+|++.
T Consensus 485 ---~~~~~l~~~~~~~P~giavDp~~g~ly~td~-~~~~~I~~~~~dG~~-~~~l~~~------~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 485 ---VKRKTLFREQGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVD-IYSLVTE------NIQWPNGITLDLLSGR 553 (699)
T ss_dssp ---CCEEEECCCSSCCCCCEECCSSSSCCEECCC-SSSCCEEBCCSSSCC-CCEESCS------SCSSCCCEEECTTTCC
T ss_pred ---CceEEEEeCCCCCcceEEEccCCCcEEEccc-CCCCeEEEEeCCCCC-eeEEEeC------CCCCccEEEEeccCCE
Confidence 223332 1 2378999996555554411 123678777775322 2222100 011122399998765
Q ss_pred eEeecc
Q 000177 1658 MLLWNG 1663 (1922)
Q Consensus 1658 lLaSgg 1663 (1922)
++++..
T Consensus 554 LY~aD~ 559 (699)
T 1n7d_A 554 LYWVDS 559 (699)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 444444
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=88.61 E-value=25 Score=41.21 Aligned_cols=109 Identities=6% Similarity=-0.103 Sum_probs=69.9
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEe--cCCcEEEeccCCCCC
Q 000177 1511 LLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSS--SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1511 ~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSS--sDgtVkLWDl~t~~g 1586 (1922)
....+++.+. +.+.++-...+.|.+++++.......+...-.....| ++.|. +.++.+. ..+.|...++. +
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~gi--avdp~~g~ly~td~~~~~~I~r~~~d---G 154 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI--ALDPSSGFMYWTDWGEVPKIERAGMD---G 154 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEE--EEEGGGTEEEEEECSSSCEEEEEETT---S
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEE--EEeCCCCEEEEEecCCCCEEEEEEcC---C
Confidence 3567888874 4455566667899999986543332233334556788 77775 4455553 25678777775 3
Q ss_pred CcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1587 GPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1587 k~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
.....+ ..-+.++|+|++..|+.+ ++..+.|..+|+..
T Consensus 155 ~~~~~~~~~~l~~Pnglavd~~~~~lY~a--D~~~~~I~~~d~dG 197 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLDYEEQKLYWA--DAKLNFIHKSNLDG 197 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEE--ETTTTEEEEEETTS
T ss_pred CCeEEEEECCCCCccEEEEeccCCEEEEE--ECCCCEEEEEcCCC
Confidence 333332 123789999977766665 36678999999874
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=88.58 E-value=9.3 Score=47.35 Aligned_cols=100 Identities=6% Similarity=-0.010 Sum_probs=59.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeecc------CCCCeeEEEeeecC----CCcEEEEe-c----
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTS------HQAPVTLVQSHLSG----ETQLLLSS-S---- 1572 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~g------Hss~VtsLq~afSp----DG~lLaSS-s---- 1572 (1922)
...+.++|.|+|+++++-...+.|++++..+++.. ..+.. .......| +|+| ++.+.++. .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgi--a~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGF--AFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEE--EECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEE--EECCCcCcCCEEEEEEeccccC
Confidence 45789999999997776554457888886555432 22211 24567788 8888 45555553 2
Q ss_pred --------CCcEEEeccCCCCC-----Ccce-Eec---cc--eeEEEcCCCCEEEEee
Q 000177 1573 --------SQDVHLWNASSIAG-----GPMH-SFE---GC--KAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1573 --------DgtVkLWDl~t~~g-----k~l~-tf~---gh--~sVaFSPDG~~LaSgS 1611 (1922)
...|.-|++..... +.+. .+. .| ..+.|.|||.++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 12455555432111 1111 121 14 6799999999888763
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=88.23 E-value=43 Score=38.78 Aligned_cols=157 Identities=8% Similarity=0.001 Sum_probs=88.1
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEe-cCCcEEEeccCCCC-CCcce-Ee----ccceeEEEcC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSS-SSQDVHLWNASSIA-GGPMH-SF----EGCKAARFSN 1602 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSS-sDgtVkLWDl~t~~-gk~l~-tf----~gh~sVaFSP 1602 (1922)
..|+..|+.+.+....+.. -..+..+ .|++.+ .++.+. ..+.|..+++.... +.... .+ .....+++.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~--~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVAL--DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEE--EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCcceEehhcC-CCceEEE--EEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 5688899987766555443 3456778 778755 455553 47889999886410 01111 22 2236788987
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ec----cEEEEcC-CCcceee
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WN----GILWDRR-NSVPVHR 1676 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sg----grLWDlr-tgk~I~k 1676 (1922)
.+..|+.+ +...+.|.++|+........+. . .......++++|.+..++ +. ++||-+. .|.....
T Consensus 87 ~~~~ly~~--d~~~~~I~~~~~~g~~~~~~~~-~------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 87 IHSNIYWT--DSVLGTVSVADTKGVKRKTLFR-E------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp TTTEEEEE--ETTTTEEEEEETTSSSEEEEEE-C------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cCCeEEEE--ECCCCEEEEEeCCCCceEEEEE-C------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 55544443 2567899999987543322222 0 112233488998665444 33 2555443 3444443
Q ss_pred ec--cCCCceEEEEecCCCEEEEEe
Q 000177 1677 FD--QFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1677 f~--gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+. ....+..++|+|++..|..+.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCceEEEEeccCCEEEEEE
Confidence 32 222334899999877776554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=88.08 E-value=8.1 Score=47.88 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=58.3
Q ss_pred CeeEEEeeecCCCcEEEEecCC-cEEEeccCCCCCCcceEecc----------ceeEEEcCC---CCEEEEeecC-----
Q 000177 1553 PVTLVQSHLSGETQLLLSSSSQ-DVHLWNASSIAGGPMHSFEG----------CKAARFSNS---GNLFAALPTE----- 1613 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSsDg-tVkLWDl~t~~gk~l~tf~g----------h~sVaFSPD---G~~LaSgS~~----- 1613 (1922)
.-+.| +|.|+|+++++...+ .|++++........+..+.. ...++|+|+ +..|+.+...
T Consensus 28 ~P~~~--a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHAL--LWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEE--EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEE--EEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 45678 889999999997764 68888764311112222322 247999995 4444443111
Q ss_pred -CC----CCeEEEEECCCC--ce--eeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1614 -TS----DRGILLYDIQTY--QL--EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1614 -S~----DgtIrIWDlrTg--k~--i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
.. ...|.-|+...+ +. ...+-.. . .....|....++|.|+|.++++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~-~-p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG-L-PSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEE-E-CCCSSCCEEEEEECTTSCEEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEc-C-CCCCCCCCCeEeECCCCeEEEEE
Confidence 00 234555555322 11 1111100 0 01235777779999999988863
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=87.73 E-value=1.1e+02 Score=42.67 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=45.9
Q ss_pred CCEEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCCceeeec-cCCCCeeEEEe-eecCCCcEEEEe-cCCcEEEe
Q 000177 1510 ALLTCITFLGD------SSHIAVGSH-TKELKIFDSNSSSPLESCT-SHQAPVTLVQS-HLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSPD------G~lLASGS~-DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~-afSpDG~lLaSS-sDgtVkLW 1579 (1922)
..|.|+++.|. +++++.|.. |++|+|+++.+.+.+.... +-.....+|.. .+ ....+|..| .||.+.-+
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEE
Confidence 57999999863 469999997 9999999998766554332 11224445533 23 233455555 58876555
Q ss_pred ccC
Q 000177 1580 NAS 1582 (1922)
Q Consensus 1580 Dl~ 1582 (1922)
.+.
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=87.44 E-value=19 Score=42.15 Aligned_cols=161 Identities=9% Similarity=0.030 Sum_probs=90.2
Q ss_pred EEEEcCCCCEEEEEeCC--------------CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec---CCcE
Q 000177 1514 CITFLGDSSHIAVGSHT--------------KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS---SQDV 1576 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~D--------------GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs---DgtV 1576 (1922)
+--|+++|.+|+-.... ..|+..+++.++... +. ..... .|+++++.|+-+. ++.-
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~~~----~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDPCI----YASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSCEE----EEEEETTEEEEEEESSSSCE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCCcc----EEEEeCCEEEEEeecCCCCc
Confidence 34467889988777643 467777776665332 32 12222 3456777776543 4444
Q ss_pred EEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1577 HLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
.||-+.. .+.....+..+....|+|+++.|+-.+ .....|...++..+.....+. + ... ..++|++
T Consensus 130 ~Iy~~~~-dGs~~~~lt~~~~~~~~~~g~~iy~t~--~g~~~Iy~~~l~g~~~~~l~~---------~-~~~-~~~~P~g 195 (302)
T 3s25_A 130 SLYRIRI-DGEEKKKIKNHYLFTCNTSDRYFYYNN--PKNGQLYRYDTASQSEALFYD---------C-NCY-KPVVLDD 195 (302)
T ss_dssp EEEEEET-TSCCCEEEESSCCCCSEEETTEEEEEC--TTTCCEEEEETTTTEEEEEEC---------S-CEE-EEEEEET
T ss_pred eEEEEEC-CCCCeEEEeCCCceEeeEECCEEEEEe--CCCceEEEEECCCCCEEEEeC---------C-Ccc-ceeeecC
Confidence 4554433 133445554444467888898888762 245778888887665443332 1 112 2356999
Q ss_pred CeEeecc-----EEEEcC-CCcceeeeccCCCceEEEEecCCCEEEEE
Q 000177 1657 TMLLWNG-----ILWDRR-NSVPVHRFDQFTDHGGGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlr-tgk~I~kf~gh~~~VsVaFSPdG~~LASG 1698 (1922)
.+|+... +|+-+. .|.....+.. .. ...|+|+|.+|.-+
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~~-~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPNPVVLTE--AN-IEHYNVYGSLIFYQ 240 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCCCEECSC--SC-EEEEEEETTEEEEE
T ss_pred CEEEEEEcCCCcEEEEEECCCCCeEEEeC--CC-cceEEECCCEEEEE
Confidence 8887432 555544 2323333321 12 24588899888744
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=36 Score=41.04 Aligned_cols=175 Identities=10% Similarity=0.122 Sum_probs=92.9
Q ss_pred EEEEEcCCCCEEEEE------------eCCCcEEEEECCCC--Cce-eeecc-----CCCCeeEEEeeecCCCc--EEEE
Q 000177 1513 TCITFLGDSSHIAVG------------SHTKELKIFDSNSS--SPL-ESCTS-----HQAPVTLVQSHLSGETQ--LLLS 1570 (1922)
Q Consensus 1513 t~LaFSPDG~lLASG------------S~DGtIkIWDl~tg--k~l-~tL~g-----Hss~VtsLq~afSpDG~--lLaS 1570 (1922)
-.+...|+|..++++ ..+|.|.+||..+. +.. ..+.+ ..-....|......++. ++++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 356678877554444 27899999998742 221 12222 12345566322222453 5555
Q ss_pred e-c--CCcEEEeccCCCCCC--cceEecc-----ceeEEEcCCCCEEEEeecC--------------CCCCeEEEEECCC
Q 000177 1571 S-S--SQDVHLWNASSIAGG--PMHSFEG-----CKAARFSNSGNLFAALPTE--------------TSDRGILLYDIQT 1626 (1922)
Q Consensus 1571 S-s--DgtVkLWDl~t~~gk--~l~tf~g-----h~sVaFSPDG~~LaSgS~~--------------S~DgtIrIWDlrT 1626 (1922)
. . +.+|.||++...... .+.++.+ .+.+.+.++|.++++...- ...+.|.-||.
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-- 210 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-- 210 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence 2 2 668889888652111 1233333 3789999999987775210 01244555554
Q ss_pred CceeeeeccccccccCCC-CcceEEEEcCCCCeEeecc------EEEEcC-CCcc--eeeeccCCCce-EEEEec-CCCE
Q 000177 1627 YQLEAKLSDTSVNLTGRG-HAYSQIHFSPSDTMLLWNG------ILWDRR-NSVP--VHRFDQFTDHG-GGGFHP-AGNE 1694 (1922)
Q Consensus 1627 gk~i~tL~d~s~~~~~~g-h~~~vVaFSPdG~lLaSgg------rLWDlr-tgk~--I~kf~gh~~~V-sVaFSP-dG~~ 1694 (1922)
++...... + ...+-++|+||++.+..+. ..||+. .++. ...|. ..... .+++.+ +|++
T Consensus 211 ~~~~~~~~---------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 211 NDVRVVAE---------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDL 280 (355)
T ss_dssp TCCEEEEE---------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCE
T ss_pred CeEEEeec---------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcE
Confidence 32221111 1 2234499999998766333 566665 2332 23442 22233 788899 5987
Q ss_pred EEEEe
Q 000177 1695 VIINS 1699 (1922)
Q Consensus 1695 LASGS 1699 (1922)
.+++.
T Consensus 281 wva~~ 285 (355)
T 3sre_A 281 WVGCH 285 (355)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66553
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=86.38 E-value=39 Score=43.36 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=57.4
Q ss_pred EEEEecCCCEEEEEeE------EEecCCC------eE-------EEEEc-CCCceeEEEccCCCEEEEEEccCchhhhhh
Q 000177 1685 GGGFHPAGNEVIINSE------VWDLRKF------RL-------LRSVP-SLDQTTITFNARGDVIYAILRRNLEDVMSA 1744 (1922)
Q Consensus 1685 sVaFSPdG~~LASGSe------IWDLrTg------kl-------L~tl~-gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~ 1744 (1922)
.+.++|||++++.+++ |+|+++. ++ +..+. |......+|.++| ..|+.+.-++..+.|.
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEEEEe
Confidence 7899999999999993 7777631 11 22222 3334789999999 7888876554444333
Q ss_pred hccc--ccccCCcceEEEEecCCCceeeeeccCCceEEEEE------cCCCceEEEEe
Q 000177 1745 VHTR--RVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFAT------ERTDSFVGLIT 1794 (1922)
Q Consensus 1745 lh~r--r~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~------SPdds~LAVVe 1794 (1922)
+... ..+.. .. ..-+..+++...+-.+.. .++|+++.+..
T Consensus 406 i~~a~~~~~g~--~~--------~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 406 MEEAVRAYKGE--KV--------NYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp HHHHHHHHTTC--CC--------CCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred ccHHHHHhcCc--cC--------CeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 2111 00100 00 112344555666666655 56777776664
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.24 E-value=21 Score=40.50 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=70.6
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEe-cC------CcEEEeccCCCCC
Q 000177 1520 DSSHIAVGSHT----KELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSS-SS------QDVHLWNASSIAG 1586 (1922)
Q Consensus 1520 DG~lLASGS~D----GtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSS-sD------gtVkLWDl~t~~g 1586 (1922)
++.+++.|+.+ ..+.+||..+++.... +......-..+ .+ ++++++.| .+ ..+.+||..+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AA--EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 56777888865 6788999887654322 21111111122 22 66776664 23 3588888876211
Q ss_pred CcceEe----ccceeEEEcCCCCEEEEeecCCC------CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1587 GPMHSF----EGCKAARFSNSGNLFAALPTETS------DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1587 k~l~tf----~gh~sVaFSPDG~~LaSgS~~S~------DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
..+..+ ..|..+.+ +++.++.|+.... -..+.+||+.+.+-.. +.+ +.....+|. ++. -++
T Consensus 131 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~--~p~~r~~~~---~~~-~~~ 201 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCP--MIEARKNHG---LVF-VKD 201 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECC--CSSCCBSCE---EEE-ETT
T ss_pred EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCC--ccchhhcce---EEE-ECC
Confidence 111111 11223332 5677777643222 3568999998865432 221 111111222 222 266
Q ss_pred CeEeecc----------EEEEcCCC
Q 000177 1657 TMLLWNG----------ILWDRRNS 1671 (1922)
Q Consensus 1657 ~lLaSgg----------rLWDlrtg 1671 (1922)
++++.+| .+||+.+.
T Consensus 202 ~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 202 KIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EEEEECCEETTEEBCCEEEEETTTT
T ss_pred EEEEEeCCCCCCCCceEEEeeCCCC
Confidence 7777766 57777765
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=5 Score=45.79 Aligned_cols=150 Identities=10% Similarity=0.065 Sum_probs=80.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce------eeec--cCCCCeeEEEeeecCCCcEEEEecCCcEEEecc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL------ESCT--SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l------~tL~--gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl 1581 (1922)
..+++++|+|+|.+-++ .+|.+.-.+..+.... ..+- +.+. -..+ .|.++|.+.++ .|+.|.-|+-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~--~fD~~G~LYav-~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFL--FFDPNGYLYAV-SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEE--EECTTSCEEEE-ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEE--EECCCCCEEEe-CCCEEEEeCC
Confidence 34779999999986666 7777666665443221 1110 1111 2566 78999999988 7799887776
Q ss_pred CCCCCC-cc---eE-----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1582 SSIAGG-PM---HS-----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1582 ~t~~gk-~l---~t-----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.+.... .+ .. +.....+.|.|+|.+.+.. |+.+.-+..-++....-+..........-|....+.|
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-----dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-----GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-----TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-----CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 431111 11 11 1234789999999977663 4554322222111111010000000011123333668
Q ss_pred cCCCCeEeecc-EEEEcCC
Q 000177 1653 SPSDTMLLWNG-ILWDRRN 1670 (1922)
Q Consensus 1653 SPdG~lLaSgg-rLWDlrt 1670 (1922)
.|++.+.+... ++|-...
T Consensus 190 ~~~G~l~~v~~g~~Y~~~~ 208 (236)
T 1tl2_A 190 SSVGTLFGVQGGKFYEDYP 208 (236)
T ss_dssp CTTSCEEEEETTEEEEESC
T ss_pred CCCCcEEEEeCCeEEecCC
Confidence 88887766444 6666543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=83.50 E-value=1.1e+02 Score=39.28 Aligned_cols=166 Identities=6% Similarity=-0.088 Sum_probs=93.5
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..+..++|++.+..|+ +-..++.|..++++.......+..-......| ++... ++++.+ ...+.|.+.++..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl--AvD~~~~~LY~tD~~~~~I~v~~~dG--- 111 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM--AVDWLGKNLYWADTGTNRIEVSKLDG--- 111 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE--EEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE--EEEeCCCEEEEEECCCCEEEEEecCC---
Confidence 3578999999666554 55567899999987554443343222446677 55544 445555 3477899988864
Q ss_pred CcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-
Q 000177 1587 GPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL- 1660 (1922)
Q Consensus 1587 k~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa- 1660 (1922)
.....+ ...+.+++.|...+|+.+.. +..+.|...++........+. .....+-++++++++.|.
T Consensus 112 ~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~-g~~~~I~r~~~dG~~~~~l~~--------~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 112 QHRQVLVWKDLDSPRALALDPAEGFMYWTEW-GGKPKIDRAAMDGSERTTLVP--------NVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp TTCEEEECSSCCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCSCEEEEC--------SCSSEEEEEEETTTTEEEE
T ss_pred CcEEEEEeCCCCCcccEEEccCCCeEEEeCC-CCCCEEEEEeCCCCceEEEEC--------CCCCcceEEEccccCEEEE
Confidence 222222 22478999995444544422 235678888876443322222 112233499999766555
Q ss_pred ecc---E--EEEcCCCcceeeec-cCCCceEEEEec
Q 000177 1661 WNG---I--LWDRRNSVPVHRFD-QFTDHGGGGFHP 1690 (1922)
Q Consensus 1661 Sgg---r--LWDlrtgk~I~kf~-gh~~~VsVaFSP 1690 (1922)
+.. + .+|+..... ..+. ....+..+++..
T Consensus 183 aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~ 217 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ 217 (628)
T ss_dssp EETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET
T ss_pred EECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC
Confidence 433 4 445443322 2332 233344666654
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=83.18 E-value=1.7 Score=46.75 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=82.0
Q ss_pred HHHHHHHhhhch-hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchh
Q 000177 541 EKYCIQCLETLG-EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lG-EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~ 618 (1922)
+...+.+|.-|. ...+.-..+++.+++..++.+|.. .+..+...|++.|+.|..|. .....+++.|+++.
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH
Confidence 344566666554 334445567788999998888853 23456778999999998654 44457889999999
Q ss_pred hhccCCCcc--cccccceeeehhcch-hhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhh
Q 000177 619 LLAVPRNNQ--TFFGLSSCLFTIGSL-QGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFA 684 (1922)
Q Consensus 619 LL~vPR~s~--a~tgvS~Clyylay~-~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~ 684 (1922)
|+++=+.+. .-.....||..|+.. +...+.++.. ..|..-+.||..++...|.+|+..+.
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~------g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA------GALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT------THHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC------CCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 998766432 112223344444443 3333333222 24566667788888888888876654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=82.08 E-value=5 Score=52.48 Aligned_cols=109 Identities=6% Similarity=-0.069 Sum_probs=66.7
Q ss_pred EEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEEe-c-CCcEEEeccCCCCCC
Q 000177 1512 LTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLSS-S-SQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1512 Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaSS-s-DgtVkLWDl~t~~gk 1587 (1922)
...+++.+. ++++++-...+.|.++++........+.........| +++|.+. ++++. . .+.|.++++.. .
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~gi--avDp~~g~ly~td~~~~~~I~~~~~dG---~ 529 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAI--VVDPVHGFMYWTDWGTPAKIKKGGLNG---V 529 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCE--ECCSSSSCCEECCCSSSCCEEBCCSSS---C
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceE--EEccCCCcEEEcccCCCCeEEEEeCCC---C
Confidence 456788754 4455555567889999986544333333222345677 7787544 44443 2 36788888763 2
Q ss_pred cceE-----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1588 PMHS-----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1588 ~l~t-----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
.... +...+.++|+|++.+|+.+ +...+.|..+|+...
T Consensus 530 ~~~~l~~~~l~~PnGlavd~~~~~LY~a--D~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 530 DIYSLVTENIQWPNGITLDLLSGRLYWV--DSKLHSISSIDVNGG 572 (699)
T ss_dssp CCCEESCSSCSSCCCEEECTTTCCEEEE--ETTTTEEEEECSSSS
T ss_pred CeeEEEeCCCCCccEEEEeccCCEEEEE--ecCCCeEEEEccCCC
Confidence 2222 2224789999976655554 266788999998753
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.00 E-value=43 Score=37.79 Aligned_cols=140 Identities=10% Similarity=0.117 Sum_probs=71.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCC---ceee--eccCCCCeeEEEeeecCCCcEEEEec------CCcEEEeccCC
Q 000177 1520 DSSHIAVGSHT-----KELKIFDSNSSS---PLES--CTSHQAPVTLVQSHLSGETQLLLSSS------SQDVHLWNASS 1583 (1922)
Q Consensus 1520 DG~lLASGS~D-----GtIkIWDl~tgk---~l~t--L~gHss~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t 1583 (1922)
++.+++.|+.+ ..+.+||..+++ .... +......-..+ .+ ++++++.|. ...+.+||..+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~--~~--~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT--TL--GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE--EE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE--EE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence 56777888865 468999998776 3322 11111111222 22 667777642 23588888876
Q ss_pred CCCCcceEec----cceeEEEcCCCCEEEEeecCCC--CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1584 IAGGPMHSFE----GCKAARFSNSGNLFAALPTETS--DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1584 ~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
.....+..+. .|..+.+ +++.++.|+..+. -..+.+||+.+.+-.. +. .......+|. .+. -+++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~--~~p~~r~~~~--~~~--~~~~ 208 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN-VT--PMATKRSGAG--VAL--LNDH 208 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-EC--CCSSCCBSCE--EEE--ETTE
T ss_pred CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe-CC--CCCcccccce--EEE--ECCE
Confidence 2111111111 1223333 5677777633221 2568999998765433 22 1111111222 122 2567
Q ss_pred eEeecc----------EEEEcCCCc
Q 000177 1658 MLLWNG----------ILWDRRNSV 1672 (1922)
Q Consensus 1658 lLaSgg----------rLWDlrtgk 1672 (1922)
+++.+| .+||+.+.+
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEeCCCCCcccceEEEEeCCCCc
Confidence 777665 577877654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.21 E-value=60 Score=36.59 Aligned_cols=176 Identities=13% Similarity=0.142 Sum_probs=83.2
Q ss_pred CCCEEEEEe-CC-----CcEEEEECCCCCcee--eeccCCCCeeEEEeeecCCCcEEEEec-C-----CcEEEeccCCCC
Q 000177 1520 DSSHIAVGS-HT-----KELKIFDSNSSSPLE--SCTSHQAPVTLVQSHLSGETQLLLSSS-S-----QDVHLWNASSIA 1585 (1922)
Q Consensus 1520 DG~lLASGS-~D-----GtIkIWDl~tgk~l~--tL~gHss~VtsLq~afSpDG~lLaSSs-D-----gtVkLWDl~t~~ 1585 (1922)
++.+++.|+ .+ ..+.+||+.+++... .+.........+ . -++++++.|. + ..+.+||..+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--S--LHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--E--ETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--E--ECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 344555555 22 368888887665322 111111111122 2 2566666643 3 468899987722
Q ss_pred ---CCcceEec----cceeEEEcCCCCEEEEeecCCC--CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1586 ---GGPMHSFE----GCKAARFSNSGNLFAALPTETS--DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1586 ---gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
.+.+..+. .|..+.+ +++.++.|+..+. -..+.+||+.+.+-.. +.+ ......+|.. +. -++
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~--~p~~r~~~~~--~~--~~~ 160 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM-LGD--MQTAREGAGL--VV--ASG 160 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE-EEE--CSSCCBSCEE--EE--ETT
T ss_pred CCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE-CCC--CCCCcccceE--EE--ECC
Confidence 11111111 1223333 5677777633221 2468999998765433 221 1111112221 22 267
Q ss_pred CeEeecc----------EEEEcCCCcc--eeeeccCCCceEEEEecCCCEEEEEe----------EEEecCCCeE
Q 000177 1657 TMLLWNG----------ILWDRRNSVP--VHRFDQFTDHGGGGFHPAGNEVIINS----------EVWDLRKFRL 1709 (1922)
Q Consensus 1657 ~lLaSgg----------rLWDlrtgk~--I~kf~gh~~~VsVaFSPdG~~LASGS----------eIWDLrTgkl 1709 (1922)
++++.+| .+||+.+.+- +..+.......+++. -+++.++.|+ .+||+.+.+-
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 7777665 5778776532 211111111112222 2566667665 2678876543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1922 | ||||
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-04 |
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 4e-07
Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 18/242 (7%)
Query: 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVT 1555
+ + + ++TC+ F + I GS LK++ + + L + H V
Sbjct: 4 GELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 1556 LVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETS 1615
Q + + G + + + +
Sbjct: 62 SSQMRDNIIIS------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 1616 DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVH 1675
D + ++DI+T Q L + + ++ D M+ +WD +H
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----KVWDPETETCLH 171
Query: 1676 RFDQFTDHGGGGFHPAGNEVIINSE-----VWDLRKFRLLRSVPSLDQTTITFNARGDVI 1730
T+ G V+ S VWD+ + ++ T + +++
Sbjct: 172 TLQGHTNR-VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL 230
Query: 1731 YA 1732
+
Sbjct: 231 VS 232
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.1 bits (118), Expect = 1e-06
Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 72/289 (24%)
Query: 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL----- 1567
T + F S + S +K++D + + H V + SG+
Sbjct: 21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80
Query: 1568 ----------------------------------LLSSSSQDVHLWNASSIAGGPMHSFE 1593
+ S+S+D + G + +F
Sbjct: 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 140
Query: 1594 G----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD------------TS 1637
G + R + G L A + ++D+ + ++ + T + +A+L + S
Sbjct: 141 GHREWVRMVRPNQDGTLIA---SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197
Query: 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHGGG-GFHP 1690
+ S+ S L +G +WD + + + G FH
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257
Query: 1691 AGNEVIINSE-----VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYA 1732
G ++ ++ VWD + R ++++ + + T++ F+ +
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.9 bits (107), Expect = 3e-05
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 1485 HRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL 1544
R++ + + S T + + F I + K L+++D + +
Sbjct: 224 SRDKTIKMWDVSTGMCLMTLVGHDNWV-RGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282
Query: 1545 ESCTSHQAPVTLVQSHLSGETQLLLSSSSQD--VHLW 1579
++ +H+ VT + H + + + S D V +W
Sbjct: 283 KTLNAHEHFVTSLDFHKTAP---YVVTGSVDQTVKVW 316
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.1 bits (118), Expect = 1e-06
Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 22/156 (14%)
Query: 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS-----QDV 1576
G+ K++D ++ T H++ + + +G + S
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFD 254
Query: 1577 HLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636
+ + + G + FS SG L D ++D
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLL---AGYDDFNCNVWDALKADRAGV---- 307
Query: 1637 SVNLTGRGHAYSQIHFSPSDTMLL---WNG--ILWD 1667
L G + S + + + W+ +W+
Sbjct: 308 ---LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.7 bits (117), Expect = 2e-06
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS 1541
+G + + D+ +T ++F + G ++D+ +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 1542 SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQD--VHLWN 1580
H V+ + G +++ S D + +WN
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGM---AVATGSWDSFLKIWN 340
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 4e-06
Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 15/190 (7%)
Query: 1498 FRPWR-TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTL 1556
F P R T R +++TC+ F + +++ G+ K ++++DS + L + H V
Sbjct: 1 FVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 1557 VQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETS- 1615
++ + L+ S+ + V +W+ + S
Sbjct: 59 LK--YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 1616 DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVH 1675
D + ++ + + + F + + G+L SV
Sbjct: 117 DNTLHVWKLPKESSVPDHGE---------EHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167
Query: 1676 RFDQFTDHGG 1685
G
Sbjct: 168 SGHGNIVVSG 177
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.8 bits (109), Expect = 2e-05
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT--SHQAPVTLVQSHLSGETQLLLS 1570
+C + D + IA+ + E+ I++ + + ++ H VT V +
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIV 67
Query: 1571 SSSQD--VHLWN 1580
+ D ++W
Sbjct: 68 TCGTDRNAYVWT 79
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 3e-05
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 5/117 (4%)
Query: 1473 GTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKE 1532
G+ + + + + + +I GS +
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 1533 LKIFDSNSSSPLESCTSHQAPVTLVQ----SHLSGETQLLLSSSS-QDVHLWNASSI 1584
+ +D S +PL H+ V V S L E + + S +W I
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 1e-04
Identities = 7/86 (8%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSP---LESCTSHQAPVTLVQSHLSGETQLLL 1569
+ I + S + + S L ++ + + L ++ P+ + + Q+ +
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74
Query: 1570 SSSSQDVHLWNASSIAGGPMHSFEGC 1595
+ ++ + +
Sbjct: 75 GTVQGEILKVDLIGSPSFQALTNNEA 100
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 1e-04
Identities = 36/271 (13%), Positives = 73/271 (26%), Gaps = 48/271 (17%)
Query: 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVT-------- 1555
CR + + C+ + D I G +KI+D N+ T H V
Sbjct: 10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 1556 -----------------------------LVQSHLSGETQLLLSSSSQDVHLWNASSIAG 1586
V ++ S + + +W+ +S
Sbjct: 68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127
Query: 1587 GPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646
+ A + + + + DR I +++ T + L+ + +
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187
Query: 1647 YSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE----VW 1702
+ SD + LWD + + + V + VW
Sbjct: 188 DRLVVSGSSDNTI----RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243
Query: 1703 DLRKFRLLRSVPSLDQTTITFNARGDVIYAI 1733
DL R+ P+ T ++ +
Sbjct: 244 DLVAALDPRA-PAGTLCLRTLVEHSGRVFRL 273
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 6e-04
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQD--VH 1577
DS A ++++D +S ++ T + + Q + + S S D ++
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321
Query: 1578 LWN 1580
+
Sbjct: 322 FYE 324
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1922 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.9 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.89 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.88 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.86 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.86 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.85 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.83 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.82 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.81 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.81 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.79 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.78 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.75 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.75 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.74 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.74 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.72 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.72 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.72 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.69 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.66 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.65 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.63 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.57 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.57 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.53 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.52 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.51 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.48 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.45 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.44 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.25 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.24 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.2 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.06 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.78 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.65 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.61 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.54 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.37 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.35 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.27 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.25 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.01 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.99 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.97 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.94 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.57 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.47 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.41 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.39 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.36 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.22 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.08 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.99 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.93 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.93 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.51 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.69 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.66 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.42 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 91.22 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 87.6 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 85.89 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 83.71 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 82.14 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 81.47 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 80.77 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.5e-27 Score=261.38 Aligned_cols=271 Identities=14% Similarity=0.205 Sum_probs=230.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
.+.++|+||. +.|++|+|+|++++|+||+.||+|+|||+.+++.+.++.+|...|+++ .|++++.+++++ .++++.
T Consensus 8 ~~~~~L~GH~-~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~--~~~~~~~~~~~~~~~~~~~ 84 (317)
T d1vyhc1 8 PEKYALSGHR-SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI--SFDHSGKLLASCSADMTIK 84 (317)
T ss_dssp SCSCEEECCS-SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEE--EECTTSSEEEEEETTSCCC
T ss_pred CccEEEcCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEE--eeecccccccccccccccc
Confidence 3456789999 999999999999999999999999999999999999999999999999 889999999985 588999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEc
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
+|+... ......+.++ .++.|+|+++.++++ +.|+.+++||+++++.+.++. .+......++|+
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 152 (317)
T d1vyhc1 85 LWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMWEVQTGYCVKTFT-------GHREWVRMVRPN 152 (317)
T ss_dssp EEETTS--SCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEEC
T ss_pred cccccc--cccccccccccccceeeeccCCCceEEee---ccCcceeEeecccceeeeEEc-------cCCCcceeeecc
Confidence 999876 4444444443 778999999999998 889999999999999888875 122344559999
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCC--------------------CEEEEEe-----EEE
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG--------------------NEVIINS-----EVW 1702 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG--------------------~~LASGS-----eIW 1702 (1922)
|++.+|++++ ++|++.+++.+..+.++...+ ++.|+|++ .++++++ ++|
T Consensus 153 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 232 (317)
T d1vyhc1 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232 (317)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence 9999999876 899999999999999888887 78887753 4677777 599
Q ss_pred ecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceE
Q 000177 1703 DLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVL 1779 (1922)
Q Consensus 1703 DLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~ 1779 (1922)
|+++++++.++.+|.. ++++|+|+|++|+++.. +..+++||..+.+.+.++.. ...|.
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------------------dg~i~iwd~~~~~~~~~~~~h~~~V~ 293 (317)
T d1vyhc1 233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-------------------DKTLRVWDYKNKRCMKTLNAHEHFVT 293 (317)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-------------------TTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred ECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC-------------------CCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 9999999999999877 79999999999999852 24567888878888888765 56799
Q ss_pred EEEEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1780 DFATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1780 dLa~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
+++|+|++.+|++.. .|+.+++|+
T Consensus 294 ~~~~s~~~~~l~s~s------~Dg~i~iWd 317 (317)
T d1vyhc1 294 SLDFHKTAPYVVTGS------VDQTVKVWE 317 (317)
T ss_dssp EEEECSSSSCEEEEE------TTSEEEEEC
T ss_pred EEEEcCCCCEEEEEe------CCCeEEEeC
Confidence 999999999988653 347899995
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.5e-27 Score=271.21 Aligned_cols=272 Identities=17% Similarity=0.233 Sum_probs=221.1
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---e--eeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL---E--SCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l---~--tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
.+.++++ +|. ..|+|++|+|+|++|+||+ ||.|+|||+.++... . ...+|.+.|+++ +|+|++++|+++
T Consensus 42 ~~~~~~~-~H~-~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v--~~s~dg~~l~s~~ 116 (337)
T d1gxra_ 42 ARQINTL-NHG-EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC--KLLPDGCTLIVGG 116 (337)
T ss_dssp EEEEEEE-CCS-SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEE--EECTTSSEEEEEE
T ss_pred ceEEEEC-CCC-CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEE--EEcCCCCEEEEee
Confidence 3556666 799 9999999999999999998 899999999765432 2 336899999999 889999999985
Q ss_pred cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
.|++|++||+.....+....+..| ..+.|+|++.+++++ +.|+.|++||+.++++..... .+....
T Consensus 117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~~~~~~~~~~~~~~~-------~~~~~v 186 (337)
T d1gxra_ 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC---CSDGNIAVWDLHNQTLVRQFQ-------GHTDGA 186 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEEEEC-------CCSSCE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccc-------cccccc
Confidence 699999999976334444555543 678999999999998 888999999999998877664 123344
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
..++|++++.++++++ ++||+++++.++.+. +...+ +++|+|++++|++++ ++||+++++... ...|
T Consensus 187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~ 264 (337)
T d1gxra_ 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH 264 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC
T ss_pred ccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc-cccc
Confidence 5599999999999876 899999999888775 55566 999999999999988 599999887764 4456
Q ss_pred Cc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1717 DQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1717 ~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
.. ++++|+|+|++|++++. +..+++|+..+...+........|.+++|+|++++|++..
T Consensus 265 ~~~i~~v~~s~~g~~l~s~s~-------------------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 265 ESCVLSLKFAYCGKWFVSTGK-------------------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEET-------------------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred ccccceEEECCCCCEEEEEeC-------------------CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEe
Confidence 55 89999999999999852 3457788888888888888888899999999999988653
Q ss_pred cCCCCCccceEEEEEec
Q 000177 1795 MDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1795 ~dds~d~dSsVRLyEVG 1811 (1922)
.|+.+++|++.
T Consensus 326 ------~D~~I~vWdl~ 336 (337)
T d1gxra_ 326 ------GDKKATVYEVI 336 (337)
T ss_dssp ------TTSCEEEEEEE
T ss_pred ------CCCeEEEEEEE
Confidence 34789999873
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2e-25 Score=249.39 Aligned_cols=274 Identities=18% Similarity=0.204 Sum_probs=221.4
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
+++.++|+||. +.|++++|+|++++|+||+.||+|+|||+.+++.+.++.+|..+|+++ +|+|++.+++++ .|+.+
T Consensus 45 ~~~~~tL~GH~-~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v--~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 45 MRTRRTLRGHL-AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC--AYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCS-SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEE--EECTTSSEEEEEETTCCE
T ss_pred eeeeEEECCCC-CCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEee--Eeeccceeeeeeccccee
Confidence 45678999999 999999999999999999999999999999999999999999999999 889999999985 69999
Q ss_pred EEeccCCCC--CCcceEeccc---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1577 HLWNASSIA--GGPMHSFEGC---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1577 kLWDl~t~~--gk~l~tf~gh---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
++|+..... ......+.+| ....+...+..+... ..|.....|+..+........ ..........
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 191 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCALWDIETGQQTTTFT-------GHTGDVMSLS 191 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEE---ETTTEEEEEETTTTEEEEEEE-------CCSSCEEEEE
T ss_pred ecccccccccccccceecccccccccccccccccccccc---ccccccccccccccccccccc-------ccceeEeeec
Confidence 999987621 1223344444 223333345556665 678889999988766555443 1233445588
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
+.+.+.++++++ ++||+++++++.++.+|...+ +++|+|+|++|++++ ++||++....+..+.....
T Consensus 192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~ 271 (340)
T d1tbga_ 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred cccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC
Confidence 899999998776 899999999999999999998 999999999999998 5999999998887753322
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEec
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~ 1795 (1922)
++++|+|+|++|+++.. +..+++||..+...+.++.. ...|.+++|+|++.+|++..
T Consensus 272 ~i~~~~~s~~~~~l~~g~~-------------------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s- 331 (340)
T d1tbga_ 272 GITSVSFSKSGRLLLAGYD-------------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS- 331 (340)
T ss_dssp CEEEEEECSSSCEEEEEET-------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-
T ss_pred ceEEEEECCCCCEEEEEEC-------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc-
Confidence 79999999999999852 23567888888888888875 56799999999999988653
Q ss_pred CCCCCccceEEEEE
Q 000177 1796 DDQEDMFSSARIYE 1809 (1922)
Q Consensus 1796 dds~d~dSsVRLyE 1809 (1922)
.|+.|++|+
T Consensus 332 -----~Dg~v~iWd 340 (340)
T d1tbga_ 332 -----WDSFLKIWN 340 (340)
T ss_dssp -----TTSCEEEEC
T ss_pred -----cCCEEEEeC
Confidence 347899994
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=5.7e-25 Score=252.99 Aligned_cols=227 Identities=11% Similarity=0.262 Sum_probs=189.0
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+........+.|.+|. +.|+|++|+|+|++|++|+.||+|+|||+.+++.. ..+.+|..+|.++ .|+|++++|++
T Consensus 43 ~~~~~~~~~~~~~~H~-~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v--~~s~d~~~l~~ 119 (311)
T d1nr0a1 43 VPVGSLTDTEIYTEHS-HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI--SWDSESKRIAA 119 (311)
T ss_dssp EETTCSSCCEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEE--EECTTSCEEEE
T ss_pred EECCCCceeEEEcCCC-CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccc--ccccccccccc
Confidence 3345667788899999 99999999999999999999999999999887754 4578999999999 88999999888
Q ss_pred ec---CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCE-EEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1571 SS---SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNL-FAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1571 Ss---DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~-LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
++ +..++||++.+ ++++.++.+| ++++|+|++++ |++| +.|+.|++||+++++....+. .
T Consensus 120 ~~~~~~~~~~v~~~~~--~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg---s~d~~i~i~d~~~~~~~~~~~-------~ 187 (311)
T d1nr0a1 120 VGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISG---SDDNTVAIFEGPPFKFKSTFG-------E 187 (311)
T ss_dssp EECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEE---ETTSCEEEEETTTBEEEEEEC-------C
T ss_pred cccccccccccccccc--ccccccccccccccccccccccceeeeccc---ccccccccccccccccccccc-------c
Confidence 53 56699999987 7777777664 78999999885 7777 789999999999999888775 1
Q ss_pred CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-------cCCCce-EEEEecCCCEEEEEe-----EEEec
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-------QFTDHG-GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-------gh~~~V-sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
+...+..+.|+|+++++++++ ++||++++..+..|. +|...| +++|+|+|++|++|+ +|||+
T Consensus 188 ~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~ 267 (311)
T d1nr0a1 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267 (311)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence 223445599999999999876 899999988777664 466778 999999999999998 59999
Q ss_pred CCCeEEEEEcCCCc---eeEEEccCCCEEEEEE
Q 000177 1705 RKFRLLRSVPSLDQ---TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1705 rTgklL~tl~gH~~---~sVaFSPdG~~LaSgs 1734 (1922)
+++++++++..|.. ..+.+.++++.|+++.
T Consensus 268 ~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s 300 (311)
T d1nr0a1 268 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300 (311)
T ss_dssp TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred CCCcEEEEEECCCCccceEEEEEecCCEEEEEE
Confidence 99999999987754 3455666667788875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-24 Score=250.30 Aligned_cols=266 Identities=16% Similarity=0.251 Sum_probs=208.1
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec------------------cCCCCeeEEEeeecCCCc
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT------------------SHQAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~------------------gHss~VtsLq~afSpDG~ 1566 (1922)
.+|. +.|+||+|+|||++|++|+ |++|+|||+.+++.+.++. +|...|++| +|+|+++
T Consensus 59 ~~H~-~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l--~~s~~~~ 134 (388)
T d1erja_ 59 LDHT-SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV--CFSPDGK 134 (388)
T ss_dssp EECS-SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEE--EECTTSS
T ss_pred CCCC-CcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEE--EECCCCC
Confidence 3799 9999999999999999997 8999999999988766553 466779999 8899999
Q ss_pred EEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1567 LLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1567 lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
+|+++ .|++|++||... ++.+..+.+| .++.|++++..++++ +.++.+++||.++........
T Consensus 135 ~l~s~~~dg~v~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~---~~~~~i~~~d~~~~~~~~~~~------- 202 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRTVRIWDLRTGQCSLTLS------- 202 (388)
T ss_dssp EEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTTEEEEEEE-------
T ss_pred cceecccccccccccccc--ccccccccccccccccccccccccccccc---ccceeeeeeeccccccccccc-------
Confidence 99995 599999999987 7777777664 789999999999998 788999999999988776654
Q ss_pred CCCCcceEEEEc-CCCCeEeecc-----EEEEcCCCcceeeec-------cCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1642 GRGHAYSQIHFS-PSDTMLLWNG-----ILWDRRNSVPVHRFD-------QFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1642 ~~gh~~~vVaFS-PdG~lLaSgg-----rLWDlrtgk~I~kf~-------gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
.......+.|+ +++.+|++++ ++||++++..+.++. +|...+ ++.|+|+|++|++++ ++|
T Consensus 203 -~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iw 281 (388)
T d1erja_ 203 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281 (388)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEE
Confidence 11222234444 5778888776 899999988776653 466677 999999999999998 599
Q ss_pred ecCCCeE------------EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce
Q 000177 1703 DLRKFRL------------LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD 1768 (1922)
Q Consensus 1703 DLrTgkl------------L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~ 1768 (1922)
|++++.. ......|.. ++++|+|+|++|+++.. +..+++||..+.+.
T Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-------------------dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-------------------DRGVLFWDKKSGNP 342 (388)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-------------------TSEEEEEETTTCCE
T ss_pred eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-------------------CCEEEEEECCCCcE
Confidence 9986543 333444544 79999999999999852 24577888888888
Q ss_pred eeeecc-CCceEEEEE------cCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1769 IATIPV-DRCVLDFAT------ERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1769 IaTidv-kr~I~dLa~------SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+.++.. ...|.++++ +|++.+|+... .|+.|++|++.+
T Consensus 343 ~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s------~Dg~I~iW~~~k 387 (388)
T d1erja_ 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGS------GDCKARIWKYKK 387 (388)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE------TTSEEEEEEEEE
T ss_pred EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe------CCCEEEEEeeee
Confidence 888775 446888875 66888888653 347899999843
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.6e-24 Score=241.99 Aligned_cols=269 Identities=9% Similarity=0.029 Sum_probs=201.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEecCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSSSSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSSsDgtVk 1577 (1922)
...+++.||. +.|++++|+|||++|+||+.||+|+|||+.+++++.++ .+|...|+++ .|+|++++++++.|++++
T Consensus 3 ~~~~~~~GH~-~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v--~~~~~g~~~~~~~d~~v~ 79 (299)
T d1nr0a2 3 SIDQVRYGHN-KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI--KTTSKGDLFTVSWDDHLK 79 (299)
T ss_dssp EEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE--EECTTSCEEEEETTTEEE
T ss_pred ccceEcCCCC-CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEE--EeeccceeecccceeeEE
Confidence 4568899999 99999999999999999999999999999999998888 5799999999 889999999889999999
Q ss_pred EeccCCCCCCcce-E---ec-cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1578 LWNASSIAGGPMH-S---FE-GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1578 LWDl~t~~gk~l~-t---f~-gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
+|+.......... . .. ...+++|+|++++++++ .++.+++|+.... .... ..+...+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~----~~~~i~~~~~~~~--~~~~---------~~~~~~~~~~ 144 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA----CYKHIAIYSHGKL--TEVP---------ISYNSSCVAL 144 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE----ESSEEEEEETTEE--EEEE---------CSSCEEEEEE
T ss_pred EeccCCcccccccccccccccccccccccccccccccc----ccccccccccccc--cccc---------cccccccccc
Confidence 9998652111111 1 11 13679999999988775 3568999996532 2222 2466777999
Q ss_pred cCCCCeEeecc-----EEEEcCCCccee-eeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE---EcCCC
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVH-RFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS---VPSLD 1717 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~-kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t---l~gH~ 1717 (1922)
+|+++++++++ ++||+++++... ....|...+ +++|+|++++|++++ .+||+.++..+.. +.+|.
T Consensus 145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~ 224 (299)
T d1nr0a2 145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT 224 (299)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999876 899999887543 345677777 999999999999998 5999988766543 34555
Q ss_pred c--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee--c--cCCceEEEEEcCCCceEE
Q 000177 1718 Q--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI--P--VDRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1718 ~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi--d--vkr~I~dLa~SPdds~LA 1791 (1922)
. ++++|+|+|++|+++..++ .+++|+..+....... . ....|..+.| +++.+|+
T Consensus 225 ~~v~~l~~s~~~~~l~sgs~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~ 284 (299)
T d1nr0a2 225 AKVACVSWSPDNVRLATGSLDN-------------------SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIV 284 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-------------------CEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEE
T ss_pred cccccccccccccceEEEcCCC-------------------EEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEE
Confidence 4 7999999999999986333 3455554443322211 1 1234665655 4556666
Q ss_pred EEecCCCCCccceEEEEEec
Q 000177 1792 LITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1792 VVe~dds~d~dSsVRLyEVG 1811 (1922)
... .|+.+|+|++.
T Consensus 285 s~s------~D~~i~iWdl~ 298 (299)
T d1nr0a2 285 SAG------QDSNIKFWNVP 298 (299)
T ss_dssp EEE------TTSCEEEEECC
T ss_pred EEe------CCCEEEEEecc
Confidence 542 35789999973
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=6.2e-24 Score=244.27 Aligned_cols=263 Identities=13% Similarity=0.109 Sum_probs=208.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
+.+.+++++|+|+.|+.++ ++.|.+||+.+++....+.+|...|+++ .|+|+|++|++| .|++|+|||+.......
T Consensus 18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~--~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVA--KTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEE--EEeCCCCeEeccccCceEeeeeeecccccc
Confidence 4567889999999999985 6679999999999999999999999999 889999999995 59999999998722222
Q ss_pred ceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe-Eeecc
Q 000177 1589 MHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM-LLWNG 1663 (1922)
Q Consensus 1589 l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l-LaSgg 1663 (1922)
...+.+ +.+++|+|++++|++++. +.+..++|||+.+++...++. ++...+..++|+|++++ +++++
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~-~~~~~~~v~~~~~~~~~~~l~-------~h~~~v~~v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGE-GRERFGHVFLFDTGTSNGNLT-------GQARAMNSVDFKPSRPFRIISGS 166 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEEC-CSSCSEEEEETTTCCBCBCCC-------CCSSCEEEEEECSSSSCEEEEEE
T ss_pred ccccccccCccccccccccccccccccc-ccccccccccccccccccccc-------ccccccccccccccceeeecccc
Confidence 344554 378999999999998842 356779999999998877764 12233445999999986 55554
Q ss_pred -----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc-------CCCc--eeEEE
Q 000177 1664 -----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP-------SLDQ--TTITF 1723 (1922)
Q Consensus 1664 -----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~-------gH~~--~sVaF 1723 (1922)
++||+++++++..+..|...+ ++.|+|++++|++++ .+||+.++..+..+. +|.. ++++|
T Consensus 167 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 246 (311)
T d1nr0a1 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246 (311)
T ss_dssp TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred cccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999988 999999999999998 599999998888775 3443 79999
Q ss_pred ccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCc----eEEEEEcCCCceEEEEecCCCC
Q 000177 1724 NARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRC----VLDFATERTDSFVGLITMDDQE 1799 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~----I~dLa~SPdds~LAVVe~dds~ 1799 (1922)
+|+|++|++++. +..+++||..+.+.+.++..... +..+.|+ +..+++..
T Consensus 247 s~~~~~l~tgs~-------------------Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s----- 300 (311)
T d1nr0a1 247 SPDGTKIASASA-------------------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSIS----- 300 (311)
T ss_dssp CTTSSEEEEEET-------------------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEE-----
T ss_pred CCCCCEEEEEeC-------------------CCeEEEEECCCCcEEEEEECCCCccceEEEEEec--CCEEEEEE-----
Confidence 999999999852 34578888888888877765432 4455554 45566543
Q ss_pred CccceEEEEEe
Q 000177 1800 DMFSSARIYEI 1810 (1922)
Q Consensus 1800 d~dSsVRLyEV 1810 (1922)
.++.+++|+.
T Consensus 301 -~dG~i~~wd~ 310 (311)
T d1nr0a1 301 -ANGFINFVNP 310 (311)
T ss_dssp -TTCCEEEEET
T ss_pred -CCCEEEEEeC
Confidence 3478999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=2.5e-24 Score=251.32 Aligned_cols=217 Identities=14% Similarity=0.167 Sum_probs=176.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~g 1586 (1922)
.+|+|++|+|||++||+|+.||.|+|||+.+++ .+..+.+|..+|++| .|+|++++|+++ .|++|+|||+.+...
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l--~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV--DWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEE--EEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEE--EECCCCCEEEEEECCCeEEEEeeccccc
Confidence 689999999999999999999999999998775 567789999999999 889999999985 599999999986222
Q ss_pred CcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1587 GPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1587 k~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
.+...+.+ +++++|+|++++|+++ +.|++|++|++........+. .....+...+..++|+|++++|+++
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~---s~d~~i~i~~~~~~~~~~~~~---~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVG---SGSRVISICYFEQENDWWVCK---HIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEE---ETTSSEEEEEEETTTTEEEEE---EECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccccccccccceee---cccCcceeeeeeccccccccc---ccccccccccccccccccccceecc
Confidence 33344433 4889999999999999 789999999988765443332 0011122344559999999999987
Q ss_pred c-----EEEEcCCC------------------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1663 G-----ILWDRRNS------------------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1663 g-----rLWDlrtg------------------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
+ ++||.... ..+.....|...+ +++|+|+|++|++++ .+||+.+++.+.++
T Consensus 160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 239 (371)
T d1k8kc_ 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239 (371)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence 6 89998643 2345556777777 999999999999998 59999999999999
Q ss_pred cCCCc--eeEEEccCCCEEEEEE
Q 000177 1714 PSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1714 ~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
..|.. ++++|+|+|.+|+++.
T Consensus 240 ~~~~~~v~s~~fs~d~~~la~g~ 262 (371)
T d1k8kc_ 240 ASETLPLLAVTFITESSLVAAGH 262 (371)
T ss_dssp ECSSCCEEEEEEEETTEEEEEET
T ss_pred ecccccceeeeecCCCCEEEEEc
Confidence 98875 7999999999988874
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.7e-22 Score=223.85 Aligned_cols=272 Identities=13% Similarity=0.206 Sum_probs=206.1
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDg 1574 (1922)
..+++.++|+||. +.|.+ +|+++|++|+|||.||+|+|||+.+++++.++.+|...|+++ .|+++ +|++ +.|+
T Consensus 4 ~~~~~~~~l~GH~-~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v--~~~~~--~l~s~s~D~ 77 (342)
T d2ovrb2 4 GELKSPKVLKGHD-DHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS--QMRDN--IIISGSTDR 77 (342)
T ss_dssp SCCCCCEEEECST-TSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEE--EEETT--EEEEEETTS
T ss_pred CCCCcCEEECCcC-CceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEE--EeCCC--ccccceecc
Confidence 4577889999999 87755 366679999999999999999999999999999999999999 77764 6766 5699
Q ss_pred cEEEeccCCCCCCcceEeccc------------------------------------------eeEEEcCCCCEEEEeec
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC------------------------------------------KAARFSNSGNLFAALPT 1612 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh------------------------------------------~sVaFSPDG~~LaSgS~ 1612 (1922)
++++|+... .......... ....+.+....++++
T Consensus 78 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (342)
T d2ovrb2 78 TLKVWNAET--GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG-- 153 (342)
T ss_dssp CEEEEETTT--TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE--
T ss_pred ccccccccc--ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee--
Confidence 999999875 2111111000 112223344566666
Q ss_pred CCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EE
Q 000177 1613 ETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GG 1686 (1922)
Q Consensus 1613 ~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sV 1686 (1922)
+.|+.|++||....+.+..+. +|......+++++.++++++ ++||++.+++++.+.+|...+ ++
T Consensus 154 -~~d~~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 223 (342)
T d2ovrb2 154 -AYDFMVKVWDPETETCLHTLQ---------GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223 (342)
T ss_dssp -ETTSCEEEEEGGGTEEEEEEC---------CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred -cCCCeEEEeecccceeeEEEc---------CcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEE
Confidence 678899999998888877775 67777788888999999877 899999999999999998877 55
Q ss_pred EEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceE
Q 000177 1687 GFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAF 1758 (1922)
Q Consensus 1687 aFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssF 1758 (1922)
.|+ +++|++++ ++||+.+.+....+.++.. ....++++++++++++. +..+
T Consensus 224 ~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-------------------Dg~i 282 (342)
T d2ovrb2 224 ELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-------------------DGTV 282 (342)
T ss_dssp EEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET-------------------TSEE
T ss_pred ecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcC-------------------CCEE
Confidence 554 57999998 5999999998888876543 45555666788888852 3457
Q ss_pred EEEecCCCceeeeecc------CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1759 RTVDAINYSDIATIPV------DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1759 rt~Da~dys~IaTidv------kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++||..+.+.+.++.. ...|++++|+|++.++++...+. ..+..+++|+.
T Consensus 283 ~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG--t~~~~l~~~Df 338 (342)
T d2ovrb2 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG--TEETKLLVLDF 338 (342)
T ss_dssp EEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS--SSCCEEEEEEC
T ss_pred EEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC--CCeeEEEEEeC
Confidence 7888777777666532 34599999999998888764332 33467888875
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1e-22 Score=233.81 Aligned_cols=217 Identities=12% Similarity=0.161 Sum_probs=184.6
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--CceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS--SPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg--k~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
...+|. +.|++++|+|+|++|++|+.||+|++||+... +....+.+|...|..+ .|+|++.+++++ .|+.|++|
T Consensus 92 ~~~~h~-~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~~~d~~i~~~ 168 (337)
T d1gxra_ 92 DCLNRD-NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL--AISPDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp ECSCTT-SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE--EECTTSSEEEEEETTSCEEEE
T ss_pred eecCCC-CcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence 345798 99999999999999999999999999998754 4556778999999999 889999999984 69999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
++.+ +++...+.+| ++++|++++.+++++ +.|+.|++||+++++.+..+. +......++|+|+
T Consensus 169 ~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~~~~~---~~d~~v~i~d~~~~~~~~~~~--------~~~~i~~l~~~~~ 235 (337)
T d1gxra_ 169 DLHN--QTLVRQFQGHTDGASCIDISNDGTKLWTG---GLDNTVRSWDLREGRQLQQHD--------FTSQIFSLGYCPT 235 (337)
T ss_dssp ETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTTEEEEEEE--------CSSCEEEEEECTT
T ss_pred cccc--ccccccccccccccccccccccccccccc---cccccccccccccceeecccc--------cccceEEEEEccc
Confidence 9987 6666666553 789999999999998 889999999999999888775 2344555999999
Q ss_pred CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-eeEEE
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-TTITF 1723 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-~sVaF 1723 (1922)
++++++++ ++||+++++.. ....|...+ ++.|+|+|++|++++ ++||+.+++.+..+..+.. ++++|
T Consensus 236 ~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 314 (337)
T d1gxra_ 236 GEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI 314 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred ccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEE
Confidence 99999876 99999988765 456777778 999999999999998 5999999999988774433 89999
Q ss_pred ccCCCEEEEEEcc
Q 000177 1724 NARGDVIYAILRR 1736 (1922)
Q Consensus 1724 SPdG~~LaSgs~~ 1736 (1922)
+|+|++|++++.+
T Consensus 315 s~d~~~l~t~s~D 327 (337)
T d1gxra_ 315 SVDDKYIVTGSGD 327 (337)
T ss_dssp CTTSCEEEEEETT
T ss_pred eCCCCEEEEEeCC
Confidence 9999999998543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=5.5e-23 Score=229.05 Aligned_cols=273 Identities=17% Similarity=0.237 Sum_probs=200.3
Q ss_pred eEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEe
Q 000177 1501 WRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLW 1579 (1922)
Q Consensus 1501 irtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLW 1579 (1922)
..+|+||. +. |+|++| +|++|+||+.||+|+|||+.+++++.++.+|.++|++| +|++++.++.++.|++|++|
T Consensus 5 ~~tL~GH~-~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l--~~s~~~~l~s~s~D~~i~iw 79 (355)
T d1nexb2 5 RTTLRGHM-TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL--KYAHGGILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEECCS-SSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE--EEETTTEEEEEETTCCEEEE
T ss_pred cEEECCcC-CCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEE--EEcCCCEEEEEecccccccc
Confidence 45789998 55 577666 57899999999999999999999999999999999999 78887654444679999999
Q ss_pred ccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc--------------cc
Q 000177 1580 NASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS--------------VN 1639 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s--------------~~ 1639 (1922)
++.. ..+...... .....+++++.+++++ +.|+.|++||+.+........... ..
T Consensus 80 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (355)
T d1nexb2 80 DIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154 (355)
T ss_dssp ETTT--TEEEEEECCCSSCEEEEEEEEETTEEEEEEE---ETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred cccc--cccccccccccccccccccccccccceeeee---cCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence 9987 444443332 1456788899999998 889999999998876544322100 00
Q ss_pred ccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1640 LTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
.....|...+..+.+++++++++. ++||+++++.+..+.++...+ ++.|+|++.++++++ ++||++++.
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 234 (355)
T d1nexb2 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 234 (355)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence 011234445567778888888766 899999999999998887777 999999999999998 599999999
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEE-EEcC
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDF-ATER 1785 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dL-a~SP 1785 (1922)
++..+.+|.. +++.|++ ++|+++.. +..+++||..+.......... .+..+ ++++
T Consensus 235 ~~~~~~~h~~~v~~~~~~~--~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~ 292 (355)
T d1nexb2 235 LMYTLQGHTALVGLLRLSD--KFLVSAAA-------------------DGSIRGWDANDYSRKFSYHHT-NLSAITTFYV 292 (355)
T ss_dssp EEEEECCCSSCCCEEEECS--SEEEEECT-------------------TSEEEEEETTTCCEEEEEECT-TCCCCCEEEE
T ss_pred ccccccccccccccccccc--ceeeeeec-------------------ccccccccccccceecccccC-CceEEEEEcC
Confidence 9999999987 6777764 68888742 234677777666554444332 23333 4566
Q ss_pred CCceEEEEecCCCCCccceEEEEEecC
Q 000177 1786 TDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1786 dds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
++.+++.. .++.+++|++..
T Consensus 293 ~~~~l~~g-------~d~~i~vwd~~t 312 (355)
T d1nexb2 293 SDNILVSG-------SENQFNIYNLRS 312 (355)
T ss_dssp CSSEEEEE-------ETTEEEEEETTT
T ss_pred CCCEEEEE-------eCCEEEEEECCC
Confidence 77766543 136799999754
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=2.4e-22 Score=219.57 Aligned_cols=237 Identities=18% Similarity=0.324 Sum_probs=201.8
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeee
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~af 1561 (1922)
++.++.. +-|.+...+.+++|++|. +.|++++|+|++.++++++.++.+.+|+....+....+.+|...+.++ .|
T Consensus 35 ~s~Dg~i--~iWd~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 109 (317)
T d1vyhc1 35 ASEDATI--KVWDYETGDFERTLKGHT-DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV--SI 109 (317)
T ss_dssp EESSSCE--EEEETTTCCCCEEECCCS-SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE--EE
T ss_pred EeCCCeE--EEEECCCCCEEEEEeCCC-CcEEEEeeecccccccccccccccccccccccccccccccccccceee--ec
Confidence 3444433 334456788899999999 999999999999999999999999999999999888899999999999 88
Q ss_pred cCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1562 SGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1562 SpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
++++..+++ +.|+.+++||+.+ ++.+..+.+| .+++|+|++++|+++ +.|+.|++|++.+++....+..
T Consensus 110 ~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~v~~~~~~~~~~~~~~~~- 183 (317)
T d1vyhc1 110 MPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTLIASC---SNDQTVRVWVVATKECKAELRE- 183 (317)
T ss_dssp CSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCCEEEEECC-
T ss_pred cCCCceEEeeccCcceeEeeccc--ceeeeEEccCCCcceeeecccCCCEEEEE---eCCCeEEEEeeccceeeEEEec-
Confidence 999999988 5699999999998 7777887764 789999999999999 8899999999999988877751
Q ss_pred cccccCCCCcceEEEEcCCC--------------------CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEec
Q 000177 1637 SVNLTGRGHAYSQIHFSPSD--------------------TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG--------------------~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSP 1690 (1922)
+......+.|+|++ .++++++ ++||+++++++.++.+|...+ +++|+|
T Consensus 184 ------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 257 (317)
T d1vyhc1 184 ------HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257 (317)
T ss_dssp ------CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred ------CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC
Confidence 12233335565543 4555554 899999999999999999998 999999
Q ss_pred CCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1691 AGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1691 dG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+|++|++++ +|||+++++++.++.+|.. ++++|+|+|++|++++.
T Consensus 258 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~ 309 (317)
T d1vyhc1 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309 (317)
T ss_dssp SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 999999998 5999999999999999876 89999999999999864
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.8e-21 Score=223.72 Aligned_cols=224 Identities=15% Similarity=0.223 Sum_probs=177.5
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
.+|. ..|++++|+|+|++|++|+.||+|++||..+++.+..+.+|...|+++ .+++++..++++ .++.|++||+.+
T Consensus 118 ~~~~-~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~~~~~~~~i~~~d~~~ 194 (388)
T d1erja_ 118 PSSD-LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLVSGSGDRTVRIWDLRT 194 (388)
T ss_dssp -CCC-CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEETTT
T ss_pred cCCC-CCEEEEEECCCCCcceeccccccccccccccccccccccccccccccc--ccccccccccccccceeeeeeeccc
Confidence 3577 889999999999999999999999999999999999999999999999 789999888885 699999999987
Q ss_pred CCCCcceEecc---ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1584 IAGGPMHSFEG---CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1584 ~~gk~l~tf~g---h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
......... ..++.|++ ++++|+++ +.|+.|++||+.++.....+.........+...+..++|+|++++|
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 269 (388)
T d1erja_ 195 --GQCSLTLSIEDGVTTVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269 (388)
T ss_dssp --TEEEEEEECSSCEEEEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred --cccccccccccccccccccCCCCCeEEEE---cCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE
Confidence 444444433 24555655 78999998 8899999999999998887753322222233344559999999999
Q ss_pred eecc-----EEEEcCCCcc------------eeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1660 LWNG-----ILWDRRNSVP------------VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1660 aSgg-----rLWDlrtgk~------------I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
++++ ++||++++.. ...+..|...+ +++|+|+|++|++|+ ++||+++++++.++++|
T Consensus 270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H 349 (388)
T d1erja_ 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349 (388)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence 9876 8999986543 34455677777 999999999999998 59999999999999999
Q ss_pred Cc--eeEE------EccCCCEEEEEEcc
Q 000177 1717 DQ--TTIT------FNARGDVIYAILRR 1736 (1922)
Q Consensus 1717 ~~--~sVa------FSPdG~~LaSgs~~ 1736 (1922)
.. .+++ |+|+|.+|++++.+
T Consensus 350 ~~~V~~~~~~~~~~~spd~~~l~s~s~D 377 (388)
T d1erja_ 350 RNSVISVAVANGSSLGPEYNVFATGSGD 377 (388)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred CCCEEEEEEecCcccCCCCCEEEEEeCC
Confidence 87 4554 67899999998643
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=6.2e-21 Score=222.38 Aligned_cols=215 Identities=10% Similarity=0.065 Sum_probs=165.1
Q ss_pred CCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeeccCCCCeeEEEee
Q 000177 1483 GVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1483 g~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~gHss~VtsLq~a 1560 (1922)
+.++....|.....++..+.+|++|. +.|++++|+|++++|++|+.|++|+|||+.++... ..+.+|...|+++ .
T Consensus 26 ~~~~~i~iw~~~~~~~~~~~~l~gH~-~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i--~ 102 (371)
T d1k8kc_ 26 PNNHEVHIYEKSGNKWVQVHELKEHN-GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV--R 102 (371)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECCS-SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEE--E
T ss_pred eCCCEEEEEECCCCCEEEEEEecCCC-CCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccc--c
Confidence 33333344444334566788999999 99999999999999999999999999999877644 4557899999999 8
Q ss_pred ecCCCcEEEEe-cCCcEEEeccCCCCCCcce----Eecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1561 LSGETQLLLSS-SSQDVHLWNASSIAGGPMH----SFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1561 fSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~----tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
|+|++++|+++ .|++|++|++.. ..... .... +.+++|+|++++|++| +.|++|++||+.......
T Consensus 103 ~~p~~~~l~~~s~d~~i~i~~~~~--~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~---s~D~~v~v~~~~~~~~~~ 177 (371)
T d1k8kc_ 103 WAPNEKKFAVGSGSRVISICYFEQ--ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG---SCDFKCRIFSAYIKEVEE 177 (371)
T ss_dssp ECTTSSEEEEEETTSSEEEEEEET--TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE---ETTSCEEEEECCCTTTSC
T ss_pred cccccccceeecccCcceeeeeec--ccccccccccccccccccccccccccccceecc---ccCcEEEEEeeccCcccc
Confidence 89999999885 699999999976 33221 2222 3789999999999999 889999999987654322
Q ss_pred eeccc---------cccccCCCCcc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCE
Q 000177 1632 KLSDT---------SVNLTGRGHAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNE 1694 (1922)
Q Consensus 1632 tL~d~---------s~~~~~~gh~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~ 1694 (1922)
..... .......+|.. ..++|+|+|++|++++ ++||+.+++.+..+..|...+ +++|+|+|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~ 257 (371)
T d1k8kc_ 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL 257 (371)
T ss_dssp CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEE
T ss_pred ccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCE
Confidence 11100 00111234444 4499999999999876 899999999999999999888 9999999999
Q ss_pred EEEEe----EEEecC
Q 000177 1695 VIINS----EVWDLR 1705 (1922)
Q Consensus 1695 LASGS----eIWDLr 1705 (1922)
|++|+ .+|...
T Consensus 258 la~g~d~~~~~~~~~ 272 (371)
T d1k8kc_ 258 VAAGHDCFPVLFTYD 272 (371)
T ss_dssp EEEETTSSCEEEEEE
T ss_pred EEEEcCCceEEEEee
Confidence 99886 355543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=9.5e-21 Score=217.54 Aligned_cols=225 Identities=14% Similarity=0.215 Sum_probs=176.7
Q ss_pred CceeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCce--------eeeccCCCCeeEEEeeecCCCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSSPL--------ESCTSHQAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk~l--------~tL~gHss~VtsLq~afSpDG~ 1566 (1922)
.+..+..+.+|....|++++|+| +|++|++|+.||+|+|||+..++.. ..+..|.++|.++ .|+++++
T Consensus 51 ~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~s~~~~ 128 (325)
T d1pgua1 51 KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI--SWDFEGR 128 (325)
T ss_dssp SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEE--EECTTSS
T ss_pred CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEE--EECCCCC
Confidence 44567778888647899999998 6789999999999999999765433 2346789999999 8899999
Q ss_pred EEEEe---cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCE-EEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1567 LLLSS---SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNL-FAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1567 lLaSS---sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~-LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
+|+++ .++.+++|++.+ ++++..+.+| ++++|+|++.+ ++++ +.|+.+++||+.+++....+.
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~---~~d~~v~~~d~~~~~~~~~~~---- 199 (325)
T d1pgua1 129 RLCVVGEGRDNFGVFISWDS--GNSLGEVSGHSQRINACHLKQSRPMRSMTV---GDDGSVVFYQGPPFKFSASDR---- 199 (325)
T ss_dssp EEEEEECCSSCSEEEEETTT--CCEEEECCSCSSCEEEEEECSSSSCEEEEE---ETTTEEEEEETTTBEEEEEEC----
T ss_pred ccceeeccccceEEEEeecc--cccceeeeecccccccccccccccceEEEe---ecccccccccccccccceecc----
Confidence 88773 377899999987 7888888765 78999998865 5666 789999999999888776654
Q ss_pred cccCCCCc--ceEEEEcCC-CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEe---cCCCEEEEEe-----EE
Q 000177 1639 NLTGRGHA--YSQIHFSPS-DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFH---PAGNEVIINS-----EV 1701 (1922)
Q Consensus 1639 ~~~~~gh~--~~vVaFSPd-G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFS---PdG~~LASGS-----eI 1701 (1922)
...+|. +..++|+|+ +.++++++ ++||+++++++.++.+|...+ ++.|+ |+|++|++++ +|
T Consensus 200 --~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i 277 (325)
T d1pgua1 200 --THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277 (325)
T ss_dssp --SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred --cccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEE
Confidence 123444 445999997 57788766 999999999999999988776 55555 7899999998 59
Q ss_pred EecCCCeEEEEEcCCCc----ee--EEEccCCCEEEEEEc
Q 000177 1702 WDLRKFRLLRSVPSLDQ----TT--ITFNARGDVIYAILR 1735 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~~----~s--VaFSPdG~~LaSgs~ 1735 (1922)
||++++++++++..|.. .. +.|++++ +|++++.
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~ 316 (325)
T d1pgua1 278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSL 316 (325)
T ss_dssp EETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEET
T ss_pred EECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEEC
Confidence 99999999998876554 33 4444443 6777753
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4e-20 Score=200.01 Aligned_cols=273 Identities=14% Similarity=0.194 Sum_probs=193.8
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
+.++.+.+|. ..|+|++| ||++|+||+.||+|+|||+.+++++.++.+|...|++| +| ++++|+++ .|++|+
T Consensus 6 ~~i~~~~~~~-~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v--~~--~~~~l~s~s~D~~i~ 78 (293)
T d1p22a2 6 QRIHCRSETS-KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QY--DERVIITGSSDSTVR 78 (293)
T ss_dssp CCEECCCSSC-CCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEE--EC--CSSEEEEEETTSCEE
T ss_pred EEEeccCCCC-CCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeee--ec--ccceeeccccccccc
Confidence 4455667888 89999765 79999999999999999999999999999999999999 55 67788884 699999
Q ss_pred EeccCCCCCCcceEecc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1578 LWNASSIAGGPMHSFEG--CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
+|++.. +........ .....+.+....++++ ..++.+.+||..+........ ....|...+..+.+.
T Consensus 79 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~ 147 (293)
T d1p22a2 79 VWDVNT--GEMLNTLIHHCEAVLHLRFNNGMMVTC---SKDRSIAVWDMASPTDITLRR------VLVGHRAAVNVVDFD 147 (293)
T ss_dssp EEESSS--CCEEEEECCCCSCEEEEECCTTEEEEE---ETTSCEEEEECSSSSCCEEEE------EECCCSSCEEEEEEE
T ss_pred cccccc--ccccccccccccccccccccccceeec---ccccceeEeeccccccccccc------cccccccccccceec
Confidence 999987 555444433 2445566667778887 778999999998776544332 112455555444445
Q ss_pred CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCceeEEEc
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQTTITFN 1724 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~~sVaFS 1724 (1922)
...+++++ ++||+++++++..+.++...+ .+.+ ++.++++++ ++||+++.+.+..+.++......++
T Consensus 148 ~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 225 (293)
T d1p22a2 148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 225 (293)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred ccccccccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeeecc
Confidence 55555544 999999999999999888777 5555 457888887 5999999999999998888667788
Q ss_pred cCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccc
Q 000177 1725 ARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFS 1803 (1922)
Q Consensus 1725 PdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dS 1803 (1922)
+++.+|+++..+....++..........+ .....+.++.. ...|.+++|+ +.+|+. ...|+
T Consensus 226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~H~~~V~~v~~d--~~~l~s------~s~Dg 287 (293)
T d1p22a2 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAP----------AGTLCLRTLVEHSGRVFRLQFD--EFQIVS------SSHDD 287 (293)
T ss_dssp CCSSEEEEEETTSCEEEEEHHHHTSTTSC----------TTTTEEEEECCCSSCCCCEEEC--SSCEEE------CCSSS
T ss_pred ccceEEEEEcCCCEEEEEECCCCcccccc----------CCceeeEEecCCCCCEEEEEEc--CCEEEE------EecCC
Confidence 89999999865443222211100111110 11122333322 3458888886 456653 33468
Q ss_pred eEEEEE
Q 000177 1804 SARIYE 1809 (1922)
Q Consensus 1804 sVRLyE 1809 (1922)
.+++|+
T Consensus 288 ~i~iWD 293 (293)
T d1p22a2 288 TILIWD 293 (293)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 899995
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.3e-20 Score=209.20 Aligned_cols=255 Identities=12% Similarity=0.061 Sum_probs=192.4
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH 1577 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVk 1577 (1922)
.+++++|+||. .+|++++|+| |+||+.||+|++||+.++ ..+|...|.++ .+++++.++..+.|++|+
T Consensus 3 ~~~i~~l~gH~-~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~--~~~~~~~~~s~s~D~~v~ 70 (287)
T d1pgua2 3 DEVLKTISGHN-KGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSL--DNSKAQEYSSISWDDTLK 70 (287)
T ss_dssp EEEEEEECCCS-SCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEE--ECCSTTCCEEEETTTEEE
T ss_pred cceeEEECCCC-CceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEE--EecCCCeEEEEeeccccc
Confidence 47899999999 9999999997 999999999999998653 46899999999 778777766667899999
Q ss_pred EeccCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1578 LWNASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+|++.. . .+.. ...+.+++++..++++ .++.+.+|+..+++.+..+. +.....+++|++
T Consensus 71 ~w~~~~--~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 130 (287)
T d1pgua2 71 VNGITK--H----EFGSQPKVASANNDGFTAVLT----NDDDLLILQSFTGDIIKSVR----------LNSPGSAVSLSQ 130 (287)
T ss_dssp ETTEEE--E----ECSSCEEEEEECSSSEEEEEE----TTSEEEEEETTTCCEEEEEE----------CSSCEEEEEECS
T ss_pred cccccc--c----ccccceeeeeeccCCceEEEe----ecccceeeeccceeeeeecc----------ccceeeeeeccC
Confidence 999875 1 2222 3667889988887775 45678999999999888775 334457788888
Q ss_pred CeEeecc------EEEEcCCCcceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE-EcCCCc--ee
Q 000177 1657 TMLLWNG------ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS-VPSLDQ--TT 1720 (1922)
Q Consensus 1657 ~lLaSgg------rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t-l~gH~~--~s 1720 (1922)
..++.++ ++|++...+....+.. +...+ +++|+|+|.+|++|+ ++||+.+++.+.. +.+|.. ++
T Consensus 131 ~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 210 (287)
T d1pgua2 131 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA 210 (287)
T ss_dssp SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE
T ss_pred cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccce
Confidence 8887554 8999987666555543 45556 899999999999998 5999999887654 456665 79
Q ss_pred EEEccCCC----------EEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-Cceeeeecc-CCceEEEEEcCCCc
Q 000177 1721 ITFNARGD----------VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-YSDIATIPV-DRCVLDFATERTDS 1788 (1922)
Q Consensus 1721 VaFSPdG~----------~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-ys~IaTidv-kr~I~dLa~SPdds 1788 (1922)
++|+|.+. ++++++ .+..+++|+..+ ...+..... ...|.+++|+|++.
T Consensus 211 ~~~~p~~~~~~~~~~~~~~l~sgs-------------------~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~ 271 (287)
T d1pgua2 211 ISWKPAEKGANEEEIEEDLVATGS-------------------LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 271 (287)
T ss_dssp EEECCCC------CCSCCEEEEEE-------------------TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred eeecccccccccccCCCCeeEeec-------------------CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE
Confidence 99998664 455553 334567777655 334444433 55699999999876
Q ss_pred eEEEEecCCCCCccceEEEEEe
Q 000177 1789 FVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++. .. .|+.+++|+|
T Consensus 272 l~s-~g------~D~~v~iW~i 286 (287)
T d1pgua2 272 LVS-SG------ADACIKRWNV 286 (287)
T ss_dssp EEE-EE------TTSCEEEEEE
T ss_pred EEE-EE------CCCeEEEEEE
Confidence 433 32 3578999986
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.3e-20 Score=207.62 Aligned_cols=270 Identities=9% Similarity=0.015 Sum_probs=188.4
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee---ccCCCCeeEEEeeecCC-CcEEEEe-cC
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC---TSHQAPVTLVQSHLSGE-TQLLLSS-SS 1573 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL---~gHss~VtsLq~afSpD-G~lLaSS-sD 1573 (1922)
+.++.+++|. +.|++|+|+|++++|++||.||+|+|||+.++.....+ .+|..+|+++ +|+|+ +.+|++| .|
T Consensus 2 ~~v~~~~~h~-d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v--~f~~~~~~~l~sg~~d 78 (342)
T d1yfqa_ 2 QIVQIEQAPK-DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC--NFIDNTDLQIYVGTVQ 78 (342)
T ss_dssp EEEECSSCCS-SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEE--EEEESSSEEEEEEETT
T ss_pred CeEEcCCCCC-CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEE--EEeCCCCCEEEEcccc
Confidence 4577788999 89999999999999999999999999999877654333 4799999999 77876 4567774 69
Q ss_pred CcEEEeccCCCCCCcceEeccc-----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC-----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh-----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++|++|++.. .........+ ....+.+++..++++ +.|+++++||++++......... ...........
T Consensus 79 ~~v~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~wd~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (342)
T d1yfqa_ 79 GEILKVDLIG--SPSFQALTNNEANLGICRICKYGDDKLIAA---SWDGLIEVIDPRNYGDGVIAVKN-LNSNNTKVKNK 152 (342)
T ss_dssp SCEEEECSSS--SSSEEECBSCCCCSCEEEEEEETTTEEEEE---ETTSEEEEECHHHHTTBCEEEEE-SCSSSSSSCCC
T ss_pred cceeeeeccc--cccccccccccccccccccccccccccccc---ccccccceeeccccccceeeecc-cccccccceee
Confidence 9999999987 4444443322 345566778888888 88999999999876554433211 01111123334
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeec---cCCCce-EEEE-ecCCCEEEEEe-----EEEecCCCe-----
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD---QFTDHG-GGGF-HPAGNEVIINS-----EVWDLRKFR----- 1708 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~---gh~~~V-sVaF-SPdG~~LASGS-----eIWDLrTgk----- 1708 (1922)
...+.+.+..+++++ ++||++..+....+. ...... +..+ ++++..+++++ .+|++....
T Consensus 153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~ 232 (342)
T d1yfqa_ 153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred eeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence 477888888888765 899999876544332 222223 4444 45677888877 478765321
Q ss_pred ----EEEEEc------CCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC
Q 000177 1709 ----LLRSVP------SLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR 1776 (1922)
Q Consensus 1709 ----lL~tl~------gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr 1776 (1922)
...... +|.. ++++|+|++.+|++++. +..+++||..+.+.+.++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~-------------------Dg~v~vWD~~~~~~l~~~~~~~ 293 (342)
T d1yfqa_ 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-------------------DGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-------------------TSCEEEEETTTTEEEEECCCCS
T ss_pred cccceeeeeeeccCCCcccccceeEEecCCccEEEEECC-------------------CCEEEEEECCCCcEEEEecCCC
Confidence 111111 1221 68999999999999853 3457888888888887776555
Q ss_pred ceEEEEEcCCCceEEEEecC
Q 000177 1777 CVLDFATERTDSFVGLITMD 1796 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~d 1796 (1922)
.+..++++|++.++++...+
T Consensus 294 ~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 294 EDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp SSEEEEEEECSSEEEEEEEC
T ss_pred CCEEEEEEeCCCEEEEEEcC
Confidence 56677888999998887544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.86 E-value=1.2e-19 Score=202.23 Aligned_cols=238 Identities=13% Similarity=0.200 Sum_probs=189.4
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeE
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTL 1556 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~Vts 1556 (1922)
.|+.++.. +-|.....+.++++..|. ..|++++|+|++++|++|+.|+.|++|+..... ....+.+|...+..
T Consensus 72 sgs~Dg~v--~iWd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (340)
T d1tbga_ 72 SASQDGKL--IIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC 148 (340)
T ss_dssp EEETTTEE--EEEETTTTEEEEEEECSC-SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEE
T ss_pred EEECCCce--eeeecccceeEEEEeccc-ccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccc
Confidence 34444433 334456788899999999 999999999999999999999999999986543 44567888887777
Q ss_pred EEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1557 VQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1557 Lq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
. ....+..+.....|.....|.... ......... +....+.+.+.+++++ +.|+.|++||+++++++.+
T Consensus 149 ~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~v~i~d~~~~~~~~~ 221 (340)
T d1tbga_ 149 C--RFLDDNQIVTSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTRLFVSG---ACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp E--EEEETTEEEEEETTTEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSEEEEE---ETTTEEEEEETTTTEEEEE
T ss_pred c--cccccccccccccccccccccccc--ccccccccccceeEeeeccccccceeEEe---ecCceEEEEECCCCcEEEE
Confidence 7 555565566667899999888875 222222222 3667888899999998 8899999999999999888
Q ss_pred eccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeec--cCCCce-EEEEecCCCEEEEEe-----
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD--QFTDHG-GGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~--gh~~~V-sVaFSPdG~~LASGS----- 1699 (1922)
+. .+...+..++|+|++++|++++ ++||++....+..+. .+...+ ++.|+|+|++|++|+
T Consensus 222 ~~-------~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i 294 (340)
T d1tbga_ 222 FT-------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp EC-------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCE
T ss_pred Ee-------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEE
Confidence 86 1223345599999999999876 899999988877664 344456 899999999999998
Q ss_pred EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1700 EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+|||+.+++++.++.+|.. ++++|+|+|.+|++++.
T Consensus 295 ~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 5999999999999999976 89999999999999864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=4.6e-19 Score=197.09 Aligned_cols=274 Identities=11% Similarity=0.137 Sum_probs=202.0
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEee
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~a 1560 (1922)
.|+.++.. +-|.....+++++|++|. +.|++++|+|+ .+|++|+.||+|++|++...+.......+..........
T Consensus 28 tgs~Dg~i--~vWd~~~~~~~~~l~~H~-~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 103 (355)
T d1nexb2 28 TGADDKMI--RVYDSINKKFLLQLSGHD-GGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 103 (355)
T ss_dssp EEETTTEE--EEEETTTTEEEEEEECCS-SCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred EEeCCCeE--EEEECCCCcEEEEEECCC-CCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccc
Confidence 34444443 344457789999999999 99999999985 589999999999999999888877775555555444447
Q ss_pred ecCCCcEEEE-ecCCcEEEeccCCCCCCcceEec-----------------------cc--eeEEEcCCCCEEEEeecCC
Q 000177 1561 LSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFE-----------------------GC--KAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1561 fSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~-----------------------gh--~sVaFSPDG~~LaSgS~~S 1614 (1922)
+++++.++++ +.|++|++||+.+ ...+.... .+ ....+.+++++++++ .
T Consensus 104 ~~~~~~~~~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~ 178 (355)
T d1nexb2 104 EYKNIKYIVTGSRDNTLHVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG---S 178 (355)
T ss_dssp EETTEEEEEEEETTSEEEEEECCC-------------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEE---E
T ss_pred cccccceeeeecCCCcEEEEEccC--Cceeccccccceeccceeccccccceeeeeeeccccccccccccceeeee---c
Confidence 8889988888 4699999999976 32221111 01 223566678999998 8
Q ss_pred CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEE
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGF 1688 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaF 1688 (1922)
.|+.|++||+.+++.+..+. ........+.|+|++.++++++ ++||++++.++..+.+|...+ ++.|
T Consensus 179 ~d~~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 179 YDNTLIVWDVAQMKCLYILS-------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251 (355)
T ss_dssp TTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEE
T ss_pred ccceeeeeecccccceeeee-------ccccccccccccccceeeecccccceEEeeecccccccccccccccccccccc
Confidence 88999999999998887765 1234445589999999999776 899999999999999999988 8888
Q ss_pred ecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEe
Q 000177 1689 HPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVD 1762 (1922)
Q Consensus 1689 SPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~D 1762 (1922)
++ ++|++++ ++||++++........... ....|++++.+++++. +..+++||
T Consensus 252 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--------------------d~~i~vwd 309 (355)
T d1nexb2 252 SD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--------------------ENQFNIYN 309 (355)
T ss_dssp CS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE--------------------TTEEEEEE
T ss_pred cc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe--------------------CCEEEEEE
Confidence 64 6899988 5999998876655443333 4556788888888773 23467888
Q ss_pred cCCCceeeeec--cCCceEEEEEcCCCceEEEE
Q 000177 1763 AINYSDIATIP--VDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1763 a~dys~IaTid--vkr~I~dLa~SPdds~LAVV 1793 (1922)
..+.+.+.... ....|.+++|+|+ ..++..
T Consensus 310 ~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~ 341 (355)
T d1nexb2 310 LRSGKLVHANILKDADQIWSVNFKGK-TLVAAV 341 (355)
T ss_dssp TTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEE
T ss_pred CCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEE
Confidence 77777664432 2456999999986 444443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=5.3e-19 Score=202.84 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=189.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCC--CceeeeccC-CCCeeEEEeeecC--CCcEEEEe-cCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTK-ELKIFDSNSS--SPLESCTSH-QAPVTLVQSHLSG--ETQLLLSS-SSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DG-tIkIWDl~tg--k~l~tL~gH-ss~VtsLq~afSp--DG~lLaSS-sDgtVkLWDl~ 1582 (1922)
+.+++++|+|+|+.|+.++.+. .|+.|+.... .....+.+| ...|+++ .|+| ++.+|+++ .|++|+|||+.
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v--~fsP~~~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTV--KFSPIKGSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEE--EECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEE--EEeeCCCCCEEEEEeCCCCEEEeeec
Confidence 3467899999999999887654 3566765443 446677888 4689999 7776 67899885 59999999997
Q ss_pred CCCCCcceEec------------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc--e
Q 000177 1583 SIAGGPMHSFE------------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY--S 1648 (1922)
Q Consensus 1583 t~~gk~l~tf~------------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~--~ 1648 (1922)
. +.....+. .+.+++|+++++++++++. +.++.+++|+..+++++..+. +|.. .
T Consensus 96 ~--~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~ 163 (325)
T d1pgua1 96 F--DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE-GRDNFGVFISWDSGNSLGEVS---------GHSQRIN 163 (325)
T ss_dssp E--EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC-CSSCSEEEEETTTCCEEEECC---------SCSSCEE
T ss_pred C--CcceeeeecccccccccccCcEEEEEECCCCCccceeec-cccceEEEEeecccccceeee---------ecccccc
Confidence 6 33332221 1478999999999888743 467889999999999888875 4544 4
Q ss_pred EEEEcCCCCe-Eeecc-----EEEEcCCCcceeeec---cCCCce-EEEEecC-CCEEEEEe-----EEEecCCCeEEEE
Q 000177 1649 QIHFSPSDTM-LLWNG-----ILWDRRNSVPVHRFD---QFTDHG-GGGFHPA-GNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1649 vVaFSPdG~l-LaSgg-----rLWDlrtgk~I~kf~---gh~~~V-sVaFSPd-G~~LASGS-----eIWDLrTgklL~t 1712 (1922)
.++|+|++.+ +++++ ++||...++....+. .|...+ +++|+|+ +.+|++++ ++||+++++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~ 243 (325)
T d1pgua1 164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243 (325)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc
Confidence 4999999976 45554 899999887655553 455667 8999997 68888888 5999999999999
Q ss_pred EcCCCc--eeEEEc---cCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCc-----eEEEE
Q 000177 1713 VPSLDQ--TTITFN---ARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRC-----VLDFA 1782 (1922)
Q Consensus 1713 l~gH~~--~sVaFS---PdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~-----I~dLa 1782 (1922)
+.+|.. ..+.|+ |+|.+|++++. +..+++||..+.+.+.++..... ...+.
T Consensus 244 l~~~~~~v~~~~~s~~~~dg~~l~s~s~-------------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (325)
T d1pgua1 244 IEDDQEPVQGGIFALSWLDSQKFATVGA-------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304 (325)
T ss_dssp CCBTTBCCCSCEEEEEESSSSEEEEEET-------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred ccccccccccceeeeeccCCCEEEEEeC-------------------CCeEEEEECCCCCEEEEEEecCCcccCeEEEEE
Confidence 998876 444555 68899998853 23467788777777776654332 33445
Q ss_pred EcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1783 TERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1783 ~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
|++++. ++.. ..++.+++|++
T Consensus 305 ~~~~~~-l~s~------s~dg~i~vwdl 325 (325)
T d1pgua1 305 ATGNGR-IISL------SLDGTLNFYEL 325 (325)
T ss_dssp EEETTE-EEEE------ETTSCEEEEET
T ss_pred ECCCCE-EEEE------ECCCEEEEEEC
Confidence 555544 4333 23478999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=2.6e-19 Score=210.22 Aligned_cols=131 Identities=12% Similarity=0.241 Sum_probs=109.4
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ceEEEEcCCCCeEeecc--------EE
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YSQIHFSPSDTMLLWNG--------IL 1665 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~vVaFSPdG~lLaSgg--------rL 1665 (1922)
.+++|+|++ +|++| +.|++|+|||+.+++.+..+.... ...+|. +..++|+|+|++|++++ ++
T Consensus 188 ~~v~~s~dg-~lasg---s~Dg~i~iwd~~~~~~~~~~~~~~---~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l 260 (393)
T d1sq9a_ 188 TSVDISERG-LIATG---FNNGTVQISELSTLRPLYNFESQH---SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260 (393)
T ss_dssp CEEEECTTS-EEEEE---CTTSEEEEEETTTTEEEEEEECCC------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred EEEEECCCC-EEEEE---eCCCcEEEEeeccccccccccccc---ccccccceEEEcccccccceeeeecCCCCcceeee
Confidence 578999987 78888 899999999999999888775221 112454 45599999999999886 79
Q ss_pred EEcCCCcceeeec-------------cCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc------ee
Q 000177 1666 WDRRNSVPVHRFD-------------QFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ------TT 1720 (1922)
Q Consensus 1666 WDlrtgk~I~kf~-------------gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~------~s 1720 (1922)
||+.+++++..+. +|...| +++|+|+|++|++++ +|||+++++++.++.+|.. ..
T Consensus 261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~ 340 (393)
T d1sq9a_ 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340 (393)
T ss_dssp EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred cccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccE
Confidence 9999998877764 788888 999999999999999 6999999999999999975 46
Q ss_pred EEEccCCCEEEEE
Q 000177 1721 ITFNARGDVIYAI 1733 (1922)
Q Consensus 1721 VaFSPdG~~LaSg 1733 (1922)
++|+|+|..++++
T Consensus 341 ~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 341 LAVDEHGDSLAEP 353 (393)
T ss_dssp CCBCTTSCBCSSC
T ss_pred EEECCCCCEEEEc
Confidence 8999999877644
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.5e-18 Score=190.00 Aligned_cols=238 Identities=16% Similarity=0.201 Sum_probs=176.6
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEE--
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ-- 1558 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq-- 1558 (1922)
.|+.++..+. |....++++++|.+|. +.|++++|+|+ +|++|+.|+++++|+............+...+....
T Consensus 32 sgs~Dg~i~v--Wd~~~~~~~~~~~~h~-~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (342)
T d2ovrb2 32 SGSDDNTLKV--WSAVTGKCLRTLVGHT-GGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106 (342)
T ss_dssp EEETTSCEEE--EETTTCCEEEECCCCS-SCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred EEeCCCeEEE--EECCCCCEEEEEeCCC-CCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecc
Confidence 3445444444 4456788999999999 99999999974 999999999999999876544333332222222110
Q ss_pred -----------------------------------eeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc--eeEEEc
Q 000177 1559 -----------------------------------SHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC--KAARFS 1601 (1922)
Q Consensus 1559 -----------------------------------~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh--~sVaFS 1601 (1922)
........++..+.|+.|++||... ..++..+.+| ....++
T Consensus 107 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~ 184 (342)
T d2ovrb2 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHTNRVYSLQ 184 (342)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG--TEEEEEECCCSSCEEEEE
T ss_pred cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc--ceeeEEEcCccccccccc
Confidence 0111122334446689999999887 6677777775 556677
Q ss_pred CCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceee
Q 000177 1602 NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHR 1676 (1922)
Q Consensus 1602 PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~k 1676 (1922)
+++.+++++ +.|++|++||+++++++.++. +|...+.++++++++|++++ ++||+...+....
T Consensus 185 ~~~~~l~s~---~~dg~i~~~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 252 (342)
T d2ovrb2 185 FDGIHVVSG---SLDTSIRVWDVETGNCIHTLT---------GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT 252 (342)
T ss_dssp ECSSEEEEE---ETTSCEEEEETTTCCEEEEEC---------CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCCCEEEEE---eCCCeEEEeecccceeeeEec---------ccccceeEEecCCCEEEEEcCCCEEEEEeccccccccc
Confidence 789999999 889999999999999988775 67777777777788999877 9999999988888
Q ss_pred eccCCCce--EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc-----CCCc--eeEEEccCCCEEEEEEccC
Q 000177 1677 FDQFTDHG--GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP-----SLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1677 f~gh~~~V--sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~-----gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+..+.... ..+++++++++++++ +|||++++++++++. +|.. ++++|+|+|.+++++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG 327 (342)
T d2ovrb2 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327 (342)
T ss_dssp ECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred ccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 87665433 455566678999998 599999999998885 3333 7999999999999885443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.81 E-value=1.1e-18 Score=194.28 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=168.8
Q ss_pred eeecCceeeEEec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc---eeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1493 FVYSRFRPWRTCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP---LESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1493 fi~srfrpirtLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~---l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
|.....+.++++. +|. ..|++++|+|+|+ +++++.|+.|++|+...... ......|...+.++ .|+++++++
T Consensus 39 Wd~~~~~~~~~~~~~h~-~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~g~~~ 114 (299)
T d1nr0a2 39 WDISTGISNRVFPDVHA-TMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL--AVSADGDIA 114 (299)
T ss_dssp EETTTCCEEECSSCSCS-SCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE--EECTTSSCE
T ss_pred EECCCCcEEEEEcCCCC-CcEEEEEeeccce-eecccceeeEEEeccCCcccccccccccccccccccc--ccccccccc
Confidence 3345667777775 588 9999999999997 55677899999999865432 22335678889999 889999999
Q ss_pred EEecCCcEEEeccCCCCCCcceEec--cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1569 LSSSSQDVHLWNASSIAGGPMHSFE--GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1569 aSSsDgtVkLWDl~t~~gk~l~tf~--gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+++.++.+++|+... ...... ...+++|+|++++|+++ +.|+.|++||+++++...... ..+...
T Consensus 115 ~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~~g---~~dg~i~~~d~~~~~~~~~~~------~~~~~~ 181 (299)
T d1nr0a2 115 VAACYKHIAIYSHGK----LTEVPISYNSSCVALSNDKQFVAVG---GQDSKVHVYKLSGASVSEVKT------IVHPAE 181 (299)
T ss_dssp EEEESSEEEEEETTE----EEEEECSSCEEEEEECTTSCEEEEE---ETTSEEEEEEEETTEEEEEEE------EECSSC
T ss_pred ccccccccccccccc----ccccccccccccccccccccccccc---ccccccccccccccccccccc------cccccc
Confidence 998899999999654 222222 24789999999999998 889999999999876544322 012234
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcce---eeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE--
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPV---HRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL-- 1710 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I---~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL-- 1710 (1922)
+..++|+|++++|++++ ++||+.++..+ ..+.+|...+ +++|+|+|++|++|+ +|||++++...
T Consensus 182 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 261 (299)
T d1nr0a2 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceE
Confidence 45599999999999876 99999987644 4566788888 899999999999998 59999886533
Q ss_pred EEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1711 RSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.....|.. ....+++++.+|++++.
T Consensus 262 ~~~~~~~~~~v~~~~~~~~~~l~s~s~ 288 (299)
T d1nr0a2 262 IIKGAHAMSSVNSVIWLNETTIVSAGQ 288 (299)
T ss_dssp EETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred EEecCCCCCcEEEEEECCCCEEEEEeC
Confidence 22333333 33345566788888853
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=1.6e-17 Score=187.22 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=182.5
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecC--CcEEEeccCCCCCCcc
Q 000177 1514 CITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSS--QDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsD--gtVkLWDl~t~~gk~l 1589 (1922)
.-.||| ||+++|+++. |.|++||+..+...+. +|...|+++ .|+|||++|++ +.+ ..|++||+.+ ++ .
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~--~~spDg~~l~~~~~~~g~~v~v~d~~~--~~-~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYV--RRGGDTKVAFIHGTREGDFLGIYDYRT--GK-A 78 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEE--EECSSSEEEEEEEETTEEEEEEEETTT--CC-E
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEE--EECCCCCEEEEEEcCCCCEEEEEECCC--Cc-E
Confidence 356999 9999999874 7999999987776553 699999999 89999999887 433 3799999986 44 3
Q ss_pred eEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1590 HSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1590 ~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
..+.. +.+++|+|+|++|+++ +.++.+++|++.+++....+. .+......++|+|+|++|+...
T Consensus 79 ~~~~~~~~~v~~~~~spdg~~l~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~spdg~~la~~~~~ 148 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDRNGKFAVVA---NDRFEIMTVDLETGKPTVIER-------SREAMITDFTISDNSRFIAYGFPL 148 (360)
T ss_dssp EECCCCCCSEEEEEECTTSSEEEEE---ETTSEEEEEETTTCCEEEEEE-------CSSSCCCCEEECTTSCEEEEEEEE
T ss_pred EEeeCCCceEEeeeeccccccccee---ccccccccccccccceeeeee-------cccccccchhhccceeeeeeeccc
Confidence 44444 3789999999999999 888999999999998877765 1123334499999999998432
Q ss_pred -------------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeE-------EEEEcCCCc
Q 000177 1664 -------------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRL-------LRSVPSLDQ 1718 (1922)
Q Consensus 1664 -------------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgkl-------L~tl~gH~~ 1718 (1922)
++||+.+++.......+.....+.|+|+|++|++++ .+||...... +..+..+..
T Consensus 149 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 228 (360)
T d1k32a3 149 KHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 228 (360)
T ss_dssp CSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred cccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccC
Confidence 699999887665554433334899999999999988 3888765432 223332222
Q ss_pred --eeEEEccCCCEEEEEEcc--Cchhhhhhh--ccc--------------------------ccccCCcceEEEEecCCC
Q 000177 1719 --TTITFNARGDVIYAILRR--NLEDVMSAV--HTR--------------------------RVKHPLFAAFRTVDAINY 1766 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~--d~~dv~s~l--h~r--------------------------r~ksp~~ssFrt~Da~dy 1766 (1922)
..+.|++++..++++... ......+.+ ... .........+++||..+.
T Consensus 229 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 308 (360)
T d1k32a3 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308 (360)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred ccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC
Confidence 344556655544432110 000000000 000 001112334556665443
Q ss_pred ceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1767 SDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1767 s~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
+... ....|.+++|+|+|++|++.. .++.+++|++.+.
T Consensus 309 ~~~~---~~~~v~~~~~SpDG~~l~~~~------~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 309 KVTE---VKNNLTDLRLSADRKTVMVRK------DDGKIYTFPLEKP 346 (360)
T ss_dssp CEEE---EEEEEEEEEECTTSCEEEEEE------TTSCEEEEESSCT
T ss_pred eEEE---ecCCcCEEEECCCCCEEEEEE------CCCeEEEEECCCC
Confidence 3211 123588999999999998763 2468999987543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.78 E-value=1.3e-16 Score=175.40 Aligned_cols=251 Identities=13% Similarity=0.163 Sum_probs=199.8
Q ss_pred EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE-Ee-cCCcEEEeccCCCCCCcceEeccc---eeEE
Q 000177 1525 AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL-SS-SSQDVHLWNASSIAGGPMHSFEGC---KAAR 1599 (1922)
Q Consensus 1525 ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa-SS-sDgtVkLWDl~t~~gk~l~tf~gh---~sVa 1599 (1922)
++++.|++|.|||+.+++.+.++... ..+..+ +|+|||++|+ ++ .+++|++||+.+ ++++.++..+ ..+.
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~v--a~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~~~~~~~~ 80 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGA--VISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGSSPQGVA 80 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEE--EECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSSSEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEE--EEeCCCCEEEEEECCCCEEEEEECCC--Cceeeeeeccccccccc
Confidence 56789999999999999999888654 456788 8999999774 44 489999999998 7777777654 7899
Q ss_pred EcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcc
Q 000177 1600 FSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVP 1673 (1922)
Q Consensus 1600 FSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~ 1673 (1922)
|++++.+++.++ ..++.+.+||..+++....+. .......+.|+|++..++..+ .+|+..+++.
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 150 (301)
T d1l0qa2 81 VSPDGKQVYVTN--MASSTLSVIDTTSNTVAGTVK--------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (301)
T ss_dssp ECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEE--------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred cccccccccccc--cccceeeecccccceeeeecc--------ccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence 999998776652 567899999999999888876 223334599999999876443 8999999999
Q ss_pred eeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhc
Q 000177 1674 VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVH 1746 (1922)
Q Consensus 1674 I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh 1746 (1922)
+..+..+.....+.|+|++.++++++ .+|+....+....+..+.. ..++|+++|..++.+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~--------- 221 (301)
T d1l0qa2 151 INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------- 221 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS---------
T ss_pred eeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccc---------
Confidence 98888777666999999999988887 3788888888887776555 7899999999998764222
Q ss_pred ccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1747 TRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1747 ~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
....+.+||..+.+.+.++.....+.+++|+|+|+++.+... .+..+++|++.
T Consensus 222 -------~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~-----~~~~i~v~D~~ 274 (301)
T d1l0qa2 222 -------YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALS-----FCNTVSVIDTA 274 (301)
T ss_dssp -------SCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET-----TTTEEEEEETT
T ss_pred -------eeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEEC-----CCCeEEEEECC
Confidence 234578889989888888888888999999999998866532 23578888763
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.75 E-value=5.6e-16 Score=170.38 Aligned_cols=250 Identities=13% Similarity=0.180 Sum_probs=194.7
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
.+...+.+.++++... ..+..++|+|||++| ++++.++.|++||+.+++.+.++..|.. +..+ .|++++..++.
T Consensus 16 v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ 90 (301)
T d1l0qa2 16 VIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGV--AVSPDGKQVYV 90 (301)
T ss_dssp EEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEE--EECTTSSEEEE
T ss_pred EEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccc--ccccccccccc
Confidence 3445677777777653 357899999999987 5677899999999999999999987764 5777 78999987665
Q ss_pred -e-cCCcEEEeccCCCCCCcceEeccc---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 -S-SSQDVHLWNASSIAGGPMHSFEGC---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 -S-sDgtVkLWDl~t~~gk~l~tf~gh---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+ .++.+.+|+..+ ++....+..+ .++.|+|+++.++.+. ..++.+.+|+..++..+..+. ...
T Consensus 91 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~ 158 (301)
T d1l0qa2 91 TNMASSTLSVIDTTS--NTVAGTVKTGKSPLGLALSPDGKKLYVTN--NGDKTVSVINTVTKAVINTVS--------VGR 158 (301)
T ss_dssp EETTTTEEEEEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEE--------CCS
T ss_pred cccccceeeeccccc--ceeeeeccccccceEEEeecCCCeeeeee--ccccceeeeeccccceeeecc--------cCC
Confidence 4 478899999987 6666666543 7899999999876552 668899999999999888776 223
Q ss_pred cceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--------EEEecCCCeEEE
Q 000177 1646 AYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--------EVWDLRKFRLLR 1711 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--------eIWDLrTgklL~ 1711 (1922)
....+.|+|++..+++.+ .+|+....+....+..+.....+.|+++|..++++. .+||+.+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~ 238 (301)
T d1l0qa2 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred CceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE
Confidence 344589999999887554 678877777777776666666899999999887654 489999999999
Q ss_pred EEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC
Q 000177 1712 SVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR 1776 (1922)
Q Consensus 1712 tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr 1776 (1922)
+++.+.. +.++|+|+|++|+++.. ....+.+||..+.+.+.++.+..
T Consensus 239 ~~~~~~~~~~va~spdg~~l~va~~------------------~~~~i~v~D~~t~~~~~~~~vg~ 286 (301)
T d1l0qa2 239 RIPVGPDPAGIAVTPDGKKVYVALS------------------FCNTVSVIDTATNTITATMAVGK 286 (301)
T ss_dssp EEECCSSEEEEEECTTSSEEEEEET------------------TTTEEEEEETTTTEEEEEEECSS
T ss_pred EEcCCCCEEEEEEeCCCCEEEEEEC------------------CCCeEEEEECCCCeEEEEEeCCC
Confidence 9886544 89999999999876532 22457888988888888876644
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.75 E-value=3.3e-16 Score=176.36 Aligned_cols=234 Identities=11% Similarity=0.040 Sum_probs=164.9
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNAS 1582 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~ 1582 (1922)
+|. ..|++++|+|||++|++++.+. .|++||+.+++. ..+..|...|.++ .|+|++++|+++ .++.+++|++.
T Consensus 40 ~~~-~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~--~~spdg~~l~~~~~~~~~~~~~~~ 115 (360)
T d1k32a3 40 PEP-LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAM--GVDRNGKFAVVANDRFEIMTVDLE 115 (360)
T ss_dssp SCC-SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEE--EECTTSSEEEEEETTSEEEEEETT
T ss_pred cCC-CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEee--eecccccccceecccccccccccc
Confidence 688 8999999999999998877654 799999987765 5677899999999 899999999984 69999999998
Q ss_pred CCCCCcceEecc----ceeEEEcCCCCEEEEeec-------CCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1583 SIAGGPMHSFEG----CKAARFSNSGNLFAALPT-------ETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1583 t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~-------~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
+ +++...+.. +.+++|+|+|++|+.+.. ...++.+++||+.+++...... +.+....++
T Consensus 116 ~--~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~~~ 185 (360)
T d1k32a3 116 T--GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--------ENSHDYAPA 185 (360)
T ss_dssp T--CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--------SSSBEEEEE
T ss_pred c--cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc--------ccccccccc
Confidence 7 666666654 378999999999986532 2356779999999887655443 344555689
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcc-------eeeeccC------------------------------------CCc
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVP-------VHRFDQF------------------------------------TDH 1683 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~-------I~kf~gh------------------------------------~~~ 1683 (1922)
|+|+|++|++++ .+||...... +..+..+ ...
T Consensus 186 ~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (360)
T d1k32a3 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265 (360)
T ss_dssp ECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC
T ss_pred ccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCc
Confidence 999999999766 6787654211 1111000 001
Q ss_pred e-EEEEecCCCEEEEEe------------------EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhh
Q 000177 1684 G-GGGFHPAGNEVIINS------------------EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSA 1744 (1922)
Q Consensus 1684 V-sVaFSPdG~~LASGS------------------eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~ 1744 (1922)
. .+..++++...+... .+||+.+++... +.+ ....++|||||++|+++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~-~v~~~~~SpDG~~l~~~~~--------- 334 (360)
T d1k32a3 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VKN-NLTDLRLSADRKTVMVRKD--------- 334 (360)
T ss_dssp EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EEE-EEEEEEECTTSCEEEEEET---------
T ss_pred eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-ecC-CcCEEEECCCCCEEEEEEC---------
Confidence 1 233334333322221 389998876532 322 2378999999999999853
Q ss_pred hcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1745 VHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1745 lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
+..+++|+........++..
T Consensus 335 ----------Dg~i~v~d~~~~~~~~~~~~ 354 (360)
T d1k32a3 335 ----------DGKIYTFPLEKPEDERTVET 354 (360)
T ss_dssp ----------TSCEEEEESSCTTSCEECCC
T ss_pred ----------CCeEEEEECCCCCcceEEEe
Confidence 23467777776666666644
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=1.1e-16 Score=175.91 Aligned_cols=250 Identities=8% Similarity=0.080 Sum_probs=167.4
Q ss_pred ccCCccccccceeeecC-ceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEE
Q 000177 1481 YSGVHRNRRDRQFVYSR-FRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~sr-frpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq 1558 (1922)
.++.++..+.|.+.... ...+....+|. +.|++++|+|+ +.+|++|+.||+|++|++..+........|...+....
T Consensus 28 s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~-~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 106 (342)
T d1yfqa_ 28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYK-HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106 (342)
T ss_dssp EEETTSEEEEEEEETTTTEEEEEEEEECS-SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEE
T ss_pred EEECCCeEEEEEccCCCcceEEEEecCCC-CCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccc
Confidence 34444444444432211 12233344798 99999999986 45899999999999999998888777766655554442
Q ss_pred eeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEe----cc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1559 SHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSF----EG------CKAARFSNSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1559 ~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf----~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
.+.++...+++ +.|+++++||++. ....... .. .....+.+.+..++++ +.|+.|++||+.+.
T Consensus 107 -~~~~~~~~~~~~~~~~~~~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~~~~~~~~ 180 (342)
T d1yfqa_ 107 -ICKYGDDKLIAASWDGLIEVIDPRN--YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG---MNNSQVQWFRLPLC 180 (342)
T ss_dssp -EEEETTTEEEEEETTSEEEEECHHH--HTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE---ESTTEEEEEESSCC
T ss_pred -ccccccccccccccccccceeeccc--cccceeeecccccccccceeeeeeeeccCCceeee---cCCCcEEEEecccC
Confidence 34455566666 6799999999976 2222221 11 1456778888999998 78999999999877
Q ss_pred ceeeeeccccccccCCCCcceEEEE-cCCCCeEeecc-----EEEEcCCCcce------e---------eeccCCCce-E
Q 000177 1628 QLEAKLSDTSVNLTGRGHAYSQIHF-SPSDTMLLWNG-----ILWDRRNSVPV------H---------RFDQFTDHG-G 1685 (1922)
Q Consensus 1628 k~i~tL~d~s~~~~~~gh~~~vVaF-SPdG~lLaSgg-----rLWDlrtgk~I------~---------kf~gh~~~V-s 1685 (1922)
......... ....+......+ ..++..+++++ .+|++...... . ...+|...+ +
T Consensus 181 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 256 (342)
T d1yfqa_ 181 EDDNGTIEE----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp TTCCCEEEE----CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred cccceeeee----cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccccee
Confidence 654433200 111233333444 44556666554 78887643211 1 112344455 8
Q ss_pred EEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEEccCchhh
Q 000177 1686 GGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAILRRNLEDV 1741 (1922)
Q Consensus 1686 VaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs~~d~~dv 1741 (1922)
++|+|++++|++|+ +|||+++++.+.++..+ ....++|+|+|++++++..++....
T Consensus 257 l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~ 318 (342)
T d1yfqa_ 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT 318 (342)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred EEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence 99999999999999 59999999999999754 4478999999999999876654333
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.74 E-value=2e-16 Score=188.13 Aligned_cols=295 Identities=8% Similarity=0.015 Sum_probs=195.7
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-----ccCCCCeeEEEeeecCCC
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-----TSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-----~gHss~VtsLq~afSpDG 1565 (1922)
+-|...+++.+.+|..|. .+..++|||||++|++++.|++|++||+.+++..... .+|.+.+.++ .|+|||
T Consensus 45 ~vwD~~t~~~~~~l~~g~--~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~--~~spDG 120 (426)
T d1hzua2 45 ALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK--FKGYED 120 (426)
T ss_dssp EEEETTTCSEEEEEECCS--SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC--STTCTT
T ss_pred EEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee--eecCCC
Confidence 344567788899998875 4899999999999999999999999999999865432 3566667777 899999
Q ss_pred cEEEE-e-cCCcEEEeccCCCCCCcceEeccc---------------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1566 QLLLS-S-SSQDVHLWNASSIAGGPMHSFEGC---------------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1566 ~lLaS-S-sDgtVkLWDl~t~~gk~l~tf~gh---------------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
++|++ + .++++++||..+ +.++..+..+ ..+.+++++..++... ...+.+.+++...+.
T Consensus 121 ~~l~v~~~~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~--~~~~~i~~~~~~~~~ 196 (426)
T d1hzua2 121 RYTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDID 196 (426)
T ss_dssp TEEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEECSSSS
T ss_pred CEEEEeecCCCeEEEEcCCc--cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec--CCCCeEEEEEecccc
Confidence 98766 3 599999999988 6666665543 2244445544444331 223445555544433
Q ss_pred eeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCc---------------e-EE
Q 000177 1629 LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDH---------------G-GG 1686 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~---------------V-sV 1686 (1922)
...... ...+.....+.|+|++++++... .+||..+++.+..+...... + ..
T Consensus 197 ~~~~~~------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T d1hzua2 197 NLTVTS------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST 270 (426)
T ss_dssp SCEEEE------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred ceeeEE------eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence 221110 11234444599999999888655 78999988877665432111 1 22
Q ss_pred EEecCCCEEEEEe--EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEe
Q 000177 1687 GFHPAGNEVIINS--EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVD 1762 (1922)
Q Consensus 1687 aFSPdG~~LASGS--eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~D 1762 (1922)
.+++++...+.++ ..|....++...++.+|.. +.++|+|+|++|++....+.. .....++++||
T Consensus 271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s------------~~~~~tv~vwd 338 (426)
T d1hzua2 271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD------------ARISQSVAVFD 338 (426)
T ss_dssp ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS------------HHHHTCEEEEE
T ss_pred ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC------------cccCCEEEEEE
Confidence 3334444444444 2455556788999999876 799999999999975211100 01234688999
Q ss_pred cCCCceeeee----------ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1763 AINYSDIATI----------PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1763 a~dys~IaTi----------dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
..+.+.+.++ +...++..++|+|+|+++.+..... .+.++.++||+...
T Consensus 339 ~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~-~~~~~~i~v~D~~T 397 (426)
T d1hzua2 339 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG-KNDSSALVVVDDKT 397 (426)
T ss_dssp TTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCC-TTSCCEEEEEETTT
T ss_pred CCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecC-CCCCCeEEEEECCC
Confidence 8877766544 2345699999999999886654322 23357799997643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=9.1e-17 Score=179.49 Aligned_cols=263 Identities=9% Similarity=-0.013 Sum_probs=193.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEE-e-cCCcEEEeccCCCCCCcceE
Q 000177 1515 ITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLS-S-SSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1515 LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaS-S-sDgtVkLWDl~t~~gk~l~t 1591 (1922)
++|++++++|++++.|++|.|||+.+++.+.++. .|...+.++ .|+|||++++. + .++.|++||+.+ ++.+.+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l--~~spDG~~l~v~~~~~~~v~~~d~~t--~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTA--MMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEE--EECTTSSEEEEEETTTTEEEEEETTT--TEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceE--EECCCCCEEEEEECCCCcEEEEeCcc--Ceeeee
Confidence 4689999999999999999999999999999886 566778899 89999998754 4 489999999988 666655
Q ss_pred ecc----------ceeEEEcCCCCEEEEeecC---------CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1592 FEG----------CKAARFSNSGNLFAALPTE---------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1592 f~g----------h~sVaFSPDG~~LaSgS~~---------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
+.. ...++|+|||++++++... ..+..+.+||..+++....+... ..+.....+.+
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 152 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-----PMPRQVYLMRA 152 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-----ECCSSCCCEEE
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-----eccCceEEEEe
Confidence 432 3679999999988876321 25788999999988766544300 01233344778
Q ss_pred cCCCCeEeecc--EEEEcCCCcceeeeccCCCceEEEEecCCCEEE--------------------------EEe-----
Q 000177 1653 SPSDTMLLWNG--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVI--------------------------INS----- 1699 (1922)
Q Consensus 1653 SPdG~lLaSgg--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LA--------------------------SGS----- 1699 (1922)
++++.++++++ .+||+.+++.+..+..+.....+.|+|++..+. ++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
T d1jmxb_ 153 ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232 (346)
T ss_dssp CTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred cCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence 88888888777 899999999888886655443445555544321 111
Q ss_pred EEEecCCCeEEEEE-cCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC
Q 000177 1700 EVWDLRKFRLLRSV-PSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR 1776 (1922)
Q Consensus 1700 eIWDLrTgklL~tl-~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr 1776 (1922)
.+||+.++...... ..+.. ..+.+++++.+++... ...+.+||..+.+.+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~v~d~~~~~~~~~~~~~~ 292 (346)
T d1jmxb_ 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--------------------LNRLAKYDLKQRKLIKAANLDH 292 (346)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--------------------ESEEEEEETTTTEEEEEEECSS
T ss_pred EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec--------------------CCeEEEEECCCCcEEEEEcCCC
Confidence 26888877655443 33333 6788888887776652 1346788888888888888888
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
.+.+++|+|+|+++++.. .++.+++|++..
T Consensus 293 ~~~~va~s~DG~~l~v~~------~d~~v~v~D~~t 322 (346)
T d1jmxb_ 293 TYYCVAFDKKGDKLYLGG------TFNDLAVFNPDT 322 (346)
T ss_dssp CCCEEEECSSSSCEEEES------BSSEEEEEETTT
T ss_pred CEEEEEEcCCCCEEEEEe------CCCcEEEEECcc
Confidence 899999999999998763 235799998754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=6.8e-16 Score=166.44 Aligned_cols=229 Identities=15% Similarity=0.244 Sum_probs=170.0
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEee
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~a 1560 (1922)
.|+.++.... |.....+++++|++|. +.|++++| ++++|++|+.||+|++|++..+........+.......
T Consensus 30 sgs~Dg~i~v--Wd~~~~~~~~~l~~H~-~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~--- 101 (293)
T d1p22a2 30 SGLRDNTIKI--WDKNTLECKRILTGHT-GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL--- 101 (293)
T ss_dssp EEESSSCEEE--EESSSCCEEEEECCCS-SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE---
T ss_pred EEeCCCeEEE--EECCCCcEEEEEecCC-CCEeeeec--ccceeecccccccccccccccccccccccccccccccc---
Confidence 3444444433 4456788999999999 99999987 57899999999999999999998877776655554444
Q ss_pred ecCCCcEEEEecCCcEEEeccCCCCCCcc---eEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1561 LSGETQLLLSSSSQDVHLWNASSIAGGPM---HSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1561 fSpDG~lLaSSsDgtVkLWDl~t~~gk~l---~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
....+.++..+.++.+.+|+... .... ..+..+ ....+.+....++++ +.|+.|++||+++++.+..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---s~d~~i~~~d~~~~~~~~~~~- 175 (293)
T d1p22a2 102 RFNNGMMVTCSKDRSIAVWDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSA---SGDRTIKVWNTSTCEFVRTLN- 175 (293)
T ss_dssp ECCTTEEEEEETTSCEEEEECSS--SSCCEEEEEECCCSSCEEEEEEETTEEEEE---ETTSEEEEEETTTCCEEEEEE-
T ss_pred cccccceeecccccceeEeeccc--cccccccccccccccccccceecccccccc---cCCCceeeecCCCCcEEEEEc-
Confidence 23344444456799999999987 3322 223333 112233345677777 789999999999999988886
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecC
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
++...+..+++++.++++++ ++||+++.+.+..+.++...+. .+++++.+|++++ ++||+.
T Consensus 176 --------~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~l~sg~~dg~i~iwd~~ 246 (293)
T d1p22a2 176 --------GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRFDNKRIVSGAYDGKIKVWDLV 246 (293)
T ss_dssp --------CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEECCSSEEEEEETTSCEEEEEHH
T ss_pred --------ccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeee-eccccceEEEEEcCCCEEEEEECC
Confidence 56666666666778888766 8999999999999988877763 4678889999998 599975
Q ss_pred C---------CeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1706 K---------FRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1706 T---------gklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
+ ..+++++.+|.. ++++|+ +.+|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp HHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECC
T ss_pred CCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEe
Confidence 3 357888999977 688885 56788874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=4e-16 Score=173.57 Aligned_cols=252 Identities=12% Similarity=0.102 Sum_probs=187.1
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeecc--CCCCeeEEEeeecCCCcEEE-Ee-cCCcEEEeccCCCCCCcceEecc---
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTS--HQAPVTLVQSHLSGETQLLL-SS-SSQDVHLWNASSIAGGPMHSFEG--- 1594 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~g--Hss~VtsLq~afSpDG~lLa-SS-sDgtVkLWDl~t~~gk~l~tf~g--- 1594 (1922)
++|++++.|++|+|||+.+++.+.++.. +...+.++ +|+|||++++ ++ .++.|.+||+.+ ++.+.++..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i--~~spDg~~l~v~~~~~~~v~v~D~~t--~~~~~~~~~~~~ 77 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVP--MVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCE--EECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEE--EECCCCCEEEEEECCCCeEEEEECCC--CcEEEEEecCCC
Confidence 4899999999999999999999988854 34567888 8999999874 44 489999999998 777766643
Q ss_pred ------ceeEEEcCCCCEEEEeecC---------CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1595 ------CKAARFSNSGNLFAALPTE---------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1595 ------h~sVaFSPDG~~LaSgS~~---------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
...++|+|++++++++... ..+..+.+||..++.....+. .......++|+|+|+++
T Consensus 78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l 149 (337)
T d1pbyb_ 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------APRQITMLAWARDGSKL 149 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--------CCSSCCCEEECTTSSCE
T ss_pred cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--------ccCCceEEEEcCCCCEE
Confidence 2579999999998877321 156789999999999888876 12223348999999999
Q ss_pred eecc---EEEEcCCCcceeeeccCCCceEEEEecCCCEE----------EE-------------------EeEEEecCCC
Q 000177 1660 LWNG---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEV----------II-------------------NSEVWDLRKF 1707 (1922)
Q Consensus 1660 aSgg---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~L----------AS-------------------GSeIWDLrTg 1707 (1922)
++++ .+||..+++.+..+..+.......++|++..+ .. +-.+|++.++
T Consensus 150 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (337)
T d1pbyb_ 150 YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp EEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred EEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence 8776 89999999888777554332222223322211 00 0137888887
Q ss_pred eEEEEE-cCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEc
Q 000177 1708 RLLRSV-PSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATE 1784 (1922)
Q Consensus 1708 klL~tl-~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~S 1784 (1922)
...... ..+.. ..+.++|++.++++.. ..+++||..+.+.+.++.....+.+++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~s 288 (337)
T d1pbyb_ 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAY---------------------NVLESFDLEKNASIKRVPLPHSYYSVNVS 288 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEE---------------------SEEEEEETTTTEEEEEEECSSCCCEEEEC
T ss_pred cEEEEEecCCCcceEEEEecccceEEEEcc---------------------ccEEEEECCCCcEEEEEcCCCCEEEEEEC
Confidence 765443 23333 6788999998888762 34678899999999999988889999999
Q ss_pred CCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1785 RTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1785 Pdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|+|+++++.. .++.+++|++..
T Consensus 289 ~dG~~l~v~~------~~~~i~v~D~~t 310 (337)
T d1pbyb_ 289 TDGSTVWLGG------ALGDLAAYDAET 310 (337)
T ss_dssp TTSCEEEEES------BSSEEEEEETTT
T ss_pred CCCCEEEEEe------CCCcEEEEECCC
Confidence 9999998752 236699998743
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=8.4e-16 Score=170.03 Aligned_cols=210 Identities=14% Similarity=0.178 Sum_probs=161.9
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccC
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~ 1582 (1922)
..++|. ..|++++|++++ .+++++.|++|++|++.+.+ +...+..+ .+++++.+++++.++.+.+|+..
T Consensus 41 ~~~~h~-~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 109 (287)
T d1pgua2 41 MHQDHS-NLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVA--SANNDGFTAVLTNDDDLLILQSF 109 (287)
T ss_dssp EECCCC-SCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEE--EECSSSEEEEEETTSEEEEEETT
T ss_pred CCCCCC-CCEEEEEecCCC-eEEEEeeccccccccccccc-------cccceeee--eeccCCceEEEeecccceeeecc
Confidence 346899 999999999764 68999999999999974322 23456677 78899999999998899999988
Q ss_pred CCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEee
Q 000177 1583 SIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1583 t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+ +..+..+... ...+++++++.+++++ ..++.+++|++...+....+. ..+......++|+|++.+|++
T Consensus 110 ~--~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~v~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~ 179 (287)
T d1pgua2 110 T--GDIIKSVRLNSPGSAVSLSQNYVAVGL--EEGNTIQVFKLSDLEVSFDLK------TPLRAKPSYISISPSETYIAA 179 (287)
T ss_dssp T--CCEEEEEECSSCEEEEEECSSEEEEEE--TTTSCEEEEETTEEEEEEECS------SCCSSCEEEEEECTTSSEEEE
T ss_pred c--eeeeeeccccceeeeeeccCcceeeec--cccceeeeeeccccceeeeee------eccCCceeEEEeccCcccccc
Confidence 7 6666666543 5667888888888772 344689999998766655543 112334556999999999998
Q ss_pred cc-----EEEEcCCCccee-eeccCCCce-EEEEecC----------CCEEEEEe-----EEEecCC-CeEEEEEcCCCc
Q 000177 1662 NG-----ILWDRRNSVPVH-RFDQFTDHG-GGGFHPA----------GNEVIINS-----EVWDLRK-FRLLRSVPSLDQ 1718 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I~-kf~gh~~~V-sVaFSPd----------G~~LASGS-----eIWDLrT-gklL~tl~gH~~ 1718 (1922)
++ ++||+.+++.+. .+.+|...+ +++|+|+ +.+|++|+ +|||+++ .+++..+.+|..
T Consensus 180 g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~ 259 (287)
T d1pgua2 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259 (287)
T ss_dssp EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC
Confidence 76 999999987654 467888888 8999875 46899988 5999977 567777788877
Q ss_pred --eeEEEccCCCEEEEEE
Q 000177 1719 --TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs 1734 (1922)
+++.|+|++. |++++
T Consensus 260 ~V~~v~~~~~~~-l~s~g 276 (287)
T d1pgua2 260 GVNNLLWETPST-LVSSG 276 (287)
T ss_dssp CEEEEEEEETTE-EEEEE
T ss_pred CeEEEEECCCCE-EEEEE
Confidence 8999999875 66664
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=2.3e-16 Score=184.79 Aligned_cols=140 Identities=18% Similarity=0.248 Sum_probs=118.7
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee------eccCCCCeeEEEeeecCCCcEEEEe-cCC---c
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES------CTSHQAPVTLVQSHLSGETQLLLSS-SSQ---D 1575 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t------L~gHss~VtsLq~afSpDG~lLaSS-sDg---t 1575 (1922)
.|. ..++|++|+|++ +|++|+.||+|+|||+.+++++.. +.+|..+|++| +|+|++++|+++ .|+ .
T Consensus 182 ~~~-~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l--~~spdg~~l~sgs~D~t~~~ 257 (393)
T d1sq9a_ 182 TPS-QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV--KFSPQGSLLAIAHDSNSFGC 257 (393)
T ss_dssp SSC-CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE--EECSSTTEEEEEEEETTEEE
T ss_pred CCC-CcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc--ccccccceeeeecCCCCcce
Confidence 455 779999999998 899999999999999999887654 45799999999 899999999995 466 4
Q ss_pred EEEeccCCCCCCcceEec-------------cc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1576 VHLWNASSIAGGPMHSFE-------------GC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~-------------gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
|+|||+++ ++++.++. +| ++++|+|++++|+++ +.|++|+|||+.+++++.++.
T Consensus 258 i~lwd~~~--g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~---s~D~~v~vWd~~~g~~~~~l~---- 328 (393)
T d1sq9a_ 258 ITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA---GWDGKLRFWDVKTKERITTLN---- 328 (393)
T ss_dssp EEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTTEEEEEEE----
T ss_pred eeeccccc--ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE---CCCCEEEEEECCCCCEEEEEC----
Confidence 99999987 66666653 33 789999999999999 899999999999999999996
Q ss_pred cccCCCCcceE------EEEcCCCCeEeecc
Q 000177 1639 NLTGRGHAYSQ------IHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1639 ~~~~~gh~~~v------VaFSPdG~lLaSgg 1663 (1922)
+|...+ ++|+|++..+++++
T Consensus 329 -----gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 329 -----MHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp -----CCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred -----CcCCcccCCccEEEECCCCCEEEEcc
Confidence 565443 78999999988776
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=6.5e-15 Score=163.66 Aligned_cols=255 Identities=13% Similarity=0.070 Sum_probs=179.0
Q ss_pred eeeecCceeeEEecCCC-CCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCC-----CeeEEEeeecCC
Q 000177 1492 QFVYSRFRPWRTCRDDA-GALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQA-----PVTLVQSHLSGE 1564 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~-d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss-----~VtsLq~afSpD 1564 (1922)
.|...+.+.++++..+. ...+.+++|+|||++| ++++.++.|.+||+.+++.+.++..+.. .+..+ .|+|+
T Consensus 15 v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v--~~s~d 92 (337)
T d1pbyb_ 15 VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA--ALSPD 92 (337)
T ss_dssp EEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE--EECTT
T ss_pred EEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeE--EEcCC
Confidence 34456777788886532 1568899999999987 5678899999999999999988866543 34466 78999
Q ss_pred CcEEEEe-------------cCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1565 TQLLLSS-------------SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1565 G~lLaSS-------------sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
+++++++ .+..+.+||..+ +..+..+.. ...+.|+|+|++++++ + +.+.+||..+++
T Consensus 93 g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~--~~~~~~d~~~~~ 165 (337)
T d1pbyb_ 93 GKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEAPRQITMLAWARDGSKLYGL---G--RDLHVMDPEAGT 165 (337)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEECCSSCCCEEECTTSSCEEEE---S--SSEEEEETTTTE
T ss_pred CcEEEEeecCCcceeeeccccccceeeccccC--CeEEEeccccCCceEEEEcCCCCEEEEE---c--CCcceeeeecCc
Confidence 9988764 256788999987 666666543 3789999999999987 4 347889999998
Q ss_pred eeeeeccccccccC------------CCCcc--eE--EEEcCCCCeEeecc-----EEEEcCCCcceee-eccCCCce-E
Q 000177 1629 LEAKLSDTSVNLTG------------RGHAY--SQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHR-FDQFTDHG-G 1685 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~------------~gh~~--~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~k-f~gh~~~V-s 1685 (1922)
...++......... ..+.. .. .....+...+.... .+||..++..... +..+.... .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (337)
T d1pbyb_ 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS 245 (337)
T ss_dssp EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEE
Confidence 88776521100000 00000 00 11112222222111 7899998875443 44444444 8
Q ss_pred EEEecCCCEEEEEe---EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEE
Q 000177 1686 GGFHPAGNEVIINS---EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV 1761 (1922)
Q Consensus 1686 VaFSPdG~~LASGS---eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~ 1761 (1922)
..++|++.+++++. .+||+.+++.+.++..... .+++|+|+|++||++. .+..+++|
T Consensus 246 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~-------------------~~~~i~v~ 306 (337)
T d1pbyb_ 246 TAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG-------------------ALGDLAAY 306 (337)
T ss_dssp EEECTTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES-------------------BSSEEEEE
T ss_pred EEecccceEEEEccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEe-------------------CCCcEEEE
Confidence 89999999988877 5999999999998874333 8999999999999883 23457888
Q ss_pred ecCCCceeeeecc
Q 000177 1762 DAINYSDIATIPV 1774 (1922)
Q Consensus 1762 Da~dys~IaTidv 1774 (1922)
|..+.+.+.++..
T Consensus 307 D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 307 DAETLEKKGQVDL 319 (337)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEEC
Confidence 9888888777654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=4.7e-14 Score=169.60 Aligned_cols=303 Identities=12% Similarity=0.026 Sum_probs=184.8
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee--e---eccCCCCeeEEEeeecCCC
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE--S---CTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~--t---L~gHss~VtsLq~afSpDG 1565 (1922)
.-+...+++.++++..|. .+..++|||||++|++++.|++|++||+.+++... . ..+|.+.+.+. .|+|||
T Consensus 45 ~v~D~~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~--~~SpDG 120 (432)
T d1qksa2 45 ALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK--MEGWED 120 (432)
T ss_dssp EEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC--STTCTT
T ss_pred EEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec--ccCCCC
Confidence 334467888899998765 49999999999999999999999999998877432 2 24566667777 889999
Q ss_pred cEEE-Ee-cCCcEEEeccCCCCCCcceEeccc---------------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1566 QLLL-SS-SSQDVHLWNASSIAGGPMHSFEGC---------------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1566 ~lLa-SS-sDgtVkLWDl~t~~gk~l~tf~gh---------------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
++|+ ++ .+++|+|||..+ ++++..+..+ ..+.++|+|..++... ..++.|.+||..+++
T Consensus 121 ~~l~vs~~~~~~v~i~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~--~~~~~i~~~d~~~~~ 196 (432)
T d1qksa2 121 KYAIAGAYWPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV--KETGKILLVDYTDLN 196 (432)
T ss_dssp TEEEEEEEETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEETTCSS
T ss_pred CEEEEEcCCCCeEEEEeCcc--ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE--ccCCeEEEEEccCCC
Confidence 9864 44 599999999998 7777666532 4578899988765542 668999999998877
Q ss_pred eeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCC-----Cce-EEEEecCCCEEE
Q 000177 1629 LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFT-----DHG-GGGFHPAGNEVI 1696 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~-----~~V-sVaFSPdG~~LA 1696 (1922)
...... ...+.....++|+|+|+++++++ .+||..+++.+..+.... ... ...+...+...+
T Consensus 197 ~~~~~~------i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 270 (432)
T d1qksa2 197 NLKTTE------ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270 (432)
T ss_dssp EEEEEE------EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred cceEEE------EcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceec
Confidence 544322 00233344599999999887665 788998888776664322 222 333333344443
Q ss_pred EEe------EEEecCCC-------eEEEEEcCCCc--eeEEEccCCCEEEEEEccC-chhhhhhh----cccccccCCcc
Q 000177 1697 INS------EVWDLRKF-------RLLRSVPSLDQ--TTITFNARGDVIYAILRRN-LEDVMSAV----HTRRVKHPLFA 1756 (1922)
Q Consensus 1697 SGS------eIWDLrTg-------klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d-~~dv~s~l----h~rr~ksp~~s 1756 (1922)
+.. .+|+..+. +....+..+.. ..++.+|+..++....... .......+ .........+.
T Consensus 271 ~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~ 350 (432)
T d1qksa2 271 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP 350 (432)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred ccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCC
Confidence 332 24554332 23333333322 3444444444444321110 00000000 00001111233
Q ss_pred eEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1757 AFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
.+++|+..+...+. +....+..++|+|+|+++.+..... ...++.++||+-
T Consensus 351 ~~k~w~~~~~~~l~--~~~~~v~~~~fS~DG~~v~~S~~~~-~~~~g~i~i~D~ 401 (432)
T d1qksa2 351 EFKTLPIAEWAGIT--EGQPRVVQGEFNKDGTEVWFSVWNG-KDQESALVVVDD 401 (432)
T ss_dssp CEEEECHHHHHTCC--SSCCEEEEEEECTTSSEEEEEEECC-TTSCCEEEEEET
T ss_pred ceEecccccccccC--CCCCcEEEeEECCCCCEEEEEEecC-CCCCCcEEEEEC
Confidence 45555433322221 2345688999999999887654332 122356777764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.57 E-value=6.6e-14 Score=156.03 Aligned_cols=246 Identities=13% Similarity=0.149 Sum_probs=173.0
Q ss_pred eeeecCceeeEEecC-CCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCC------CCeeEEEeeecC
Q 000177 1492 QFVYSRFRPWRTCRD-DAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQ------APVTLVQSHLSG 1563 (1922)
Q Consensus 1492 ~fi~srfrpirtLrg-H~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHs------s~VtsLq~afSp 1563 (1922)
.|...+.+.+++++- |. ..+.+++|+|||++| ++++.++.|++||+.+++.+.++.... ..+..+ .|+|
T Consensus 22 v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v--~~s~ 98 (346)
T d1jmxb_ 22 VVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF--AISP 98 (346)
T ss_dssp EEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE--EECT
T ss_pred EEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEE--EEec
Confidence 445567888888874 55 678999999999987 566688999999999998887764332 234567 8899
Q ss_pred CCcEEEEe-------------cCCcEEEeccCCCCCCcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEEC
Q 000177 1564 ETQLLLSS-------------SSQDVHLWNASSIAGGPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDI 1624 (1922)
Q Consensus 1564 DG~lLaSS-------------sDgtVkLWDl~t~~gk~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDl 1624 (1922)
||++++.+ .+..+.+|+..+ ++....+. .+..+.++++++.++++ ..+.+||+
T Consensus 99 DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 170 (346)
T d1jmxb_ 99 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPMPRQVYLMRAADDGSLYVAG------PDIYKMDV 170 (346)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEECCSSCCCEEECTTSCEEEES------SSEEEECT
T ss_pred CCCEEEEEecCCcceeeeeccCcceEEEEeccc--ceeeeEEEeeeccCceEEEEecCCCEEEEeC------CcceEEEc
Confidence 99988663 266788998876 44333222 23567777787766653 44899999
Q ss_pred CCCceeeeeccccccccCCCCcceEEEEcCCC--------------------------CeEeecc-----EEEEcCCCcc
Q 000177 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD--------------------------TMLLWNG-----ILWDRRNSVP 1673 (1922)
Q Consensus 1625 rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG--------------------------~lLaSgg-----rLWDlrtgk~ 1673 (1922)
.+++.+.++..... ...+.++|++ ..+.+.. .+||+.++..
T Consensus 171 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
T d1jmxb_ 171 KTGKYTVALPLRNW--------NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 242 (346)
T ss_dssp TTCCEEEEECSTTC--------CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE
T ss_pred cCCCEEEEEecCCC--------ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce
Confidence 99998887752110 0001222222 2222222 7889888875
Q ss_pred eee-eccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEEccCchhhhhhhc
Q 000177 1674 VHR-FDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAILRRNLEDVMSAVH 1746 (1922)
Q Consensus 1674 I~k-f~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh 1746 (1922)
... +..+...+ .+.++|++.+++... .+||+.+++.+..+. ++..++++|||||++|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~------------ 310 (346)
T d1jmxb_ 243 HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG------------ 310 (346)
T ss_dssp EEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES------------
T ss_pred EEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEe------------
Confidence 544 34555555 889999988887766 499999999998887 34448999999999999983
Q ss_pred ccccccCCcceEEEEecCCCceeeeeccC
Q 000177 1747 TRRVKHPLFAAFRTVDAINYSDIATIPVD 1775 (1922)
Q Consensus 1747 ~rr~ksp~~ssFrt~Da~dys~IaTidvk 1775 (1922)
.+..+++||..+.+.+.+++..
T Consensus 311 -------~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 311 -------TFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp -------BSSEEEEEETTTTEEEEEEECS
T ss_pred -------CCCcEEEEECccCCEEEEEECC
Confidence 2345788999999888887764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.57 E-value=3.7e-13 Score=159.70 Aligned_cols=272 Identities=11% Similarity=0.034 Sum_probs=172.4
Q ss_pred EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcce--Ee---ccc-
Q 000177 1523 HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMH--SF---EGC- 1595 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~--tf---~gh- 1595 (1922)
++++.+.||+|+|||+.+++.+.++..|. .+..+ +|||||++|+++ .|++|++||+.+ +++.. .+ .+|
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~v--afSPDGk~l~~~~~d~~v~vwd~~t--~~~~~~~~i~~~~~~~ 108 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHIS--RMSASGRYLLVIGRDARIDMIDLWA--KEPTKVAEIKIGIEAR 108 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEE--EECTTSCEEEEEETTSEEEEEETTS--SSCEEEEEEECCSEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEE--EECCCCCEEEEEeCCCCEEEEEccC--CceeEEEEEeCCCCCc
Confidence 56888999999999999999999998774 58999 899999999885 599999999988 54432 22 233
Q ss_pred ---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc----cCCCCcceEEEEcCCCCeEeecc----E
Q 000177 1596 ---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL----TGRGHAYSQIHFSPSDTMLLWNG----I 1664 (1922)
Q Consensus 1596 ---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~----~~~gh~~~vVaFSPdG~lLaSgg----r 1664 (1922)
.++.|+|||+++++++ ..++++++||..++.++..+....... .........+.+++++..++... .
T Consensus 109 ~~~~s~~~spDG~~l~v~~--~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~ 186 (426)
T d1hzua2 109 SVESSKFKGYEDRYTIAGA--YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186 (426)
T ss_dssp EEEECCSTTCTTTEEEEEE--EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred ceEEeeeecCCCCEEEEee--cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCe
Confidence 4567788999876652 568999999999998887765211100 00111223377888888777433 3
Q ss_pred --EEEcCCCcc-eeeeccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCCc----eeEEEccCCCEE
Q 000177 1665 --LWDRRNSVP-VHRFDQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLDQ----TTITFNARGDVI 1730 (1922)
Q Consensus 1665 --LWDlrtgk~-I~kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~~----~sVaFSPdG~~L 1730 (1922)
+++...+.. ......+.... .+.|+|+|++++++. .+|+..+++.+..+..... ....|.+.+...
T Consensus 187 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (426)
T d1hzua2 187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP 266 (426)
T ss_dssp EEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEE
T ss_pred EEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCc
Confidence 344444432 22233444444 899999999998887 4899999999887763221 344444433322
Q ss_pred EE-EEccCchhh-hhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecC-CCCCccceEE
Q 000177 1731 YA-ILRRNLEDV-MSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMD-DQEDMFSSAR 1806 (1922)
Q Consensus 1731 aS-gs~~d~~dv-~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~d-ds~d~dSsVR 1806 (1922)
+. ........+ .+.. .. ..+...+++.+.+++. ...+..++++|++.++++.... .+...+..++
T Consensus 267 ~~~~~~~~d~~v~~~~~--~~---------~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~ 335 (426)
T d1hzua2 267 VWSTSHLGDGSISLIGT--DP---------KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 335 (426)
T ss_dssp EEEEECTTTCEEEEEEC--CT---------TTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred eEEeccCCCceEEEeec--cc---------cccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence 22 111110000 0000 00 0011122344555555 3458899999999999864211 1223457899
Q ss_pred EEEecC
Q 000177 1807 IYEIGR 1812 (1922)
Q Consensus 1807 LyEVGr 1812 (1922)
+|++..
T Consensus 336 vwd~~t 341 (426)
T d1hzua2 336 VFDLKN 341 (426)
T ss_dssp EEETTC
T ss_pred EEECCC
Confidence 999743
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.53 E-value=2.4e-12 Score=147.04 Aligned_cols=276 Identities=11% Similarity=-0.013 Sum_probs=191.0
Q ss_pred CCCCCCEEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--------
Q 000177 1506 DDAGALLTCITFLGDSSHIAVG-----SHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-------- 1572 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASG-----S~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-------- 1572 (1922)
.|. +++.+++|+|||+.++.. +.++.|.+||..+++.+.++..+..+ .+ .|+|||++|++..
T Consensus 18 ~~~-~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~--a~SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 18 AAD-GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NP--VAAHSGSEFALASTSFSRIAK 92 (373)
T ss_pred cCC-CCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cE--EEcCCCCEEEEEeecCCcccc
Confidence 466 889999999999988764 34567999999999999998776654 67 8999999998742
Q ss_pred ---CCcEEEeccCCCCCCcceEeccc-----------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1573 ---SQDVHLWNASSIAGGPMHSFEGC-----------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1573 ---DgtVkLWDl~t~~gk~l~tf~gh-----------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
++.|.+||..+ ++++..+..+ ..+.|+++++.++.... ..++.+.+|+..+.+......
T Consensus 93 ~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~---- 165 (373)
T d2madh_ 93 GKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF-AAGPAVGLVVQGGSSDDQLLS---- 165 (373)
T ss_pred cccceEEEEEECCC--CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE-cCCCceEEeeccCCeEEEEec----
Confidence 57799999998 7766655431 45789999987766522 446788999998877655443
Q ss_pred cccCCCCcceEEEEcCCCCeEe-ecc-----EEEEcCCCcceeeeccCCC-----c-e-EEEEecCCCEEEEEe----EE
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSVPVHRFDQFTD-----H-G-GGGFHPAGNEVIINS----EV 1701 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk~I~kf~gh~~-----~-V-sVaFSPdG~~LASGS----eI 1701 (1922)
....+.|+|+|+.++ +.+ .+||...++.......+.. . . ...+++++.++..+. .+
T Consensus 166 -------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 238 (373)
T d2madh_ 166 -------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQ 238 (373)
T ss_pred -------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEE
Confidence 123478999997654 332 7899988877665543221 1 1 456677776666554 36
Q ss_pred EecCCCeEEEE--EcCC------------CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1702 WDLRKFRLLRS--VPSL------------DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1702 WDLrTgklL~t--l~gH------------~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
|+..+...... ...+ ....++++|++..++......... ........+.++|..+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~v~~~d~~t~~ 309 (373)
T d2madh_ 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW---------KLHAAAKEVTSVTGLVGQ 309 (373)
T ss_pred EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE---------EeecCCCeEEEEECCCCc
Confidence 77766543322 1111 114577888888877664322111 112245678899999999
Q ss_pred eeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1768 DIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1768 ~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.+..+.....+..++|+|+|+.+.++. ...+..+++|++...
T Consensus 310 ~~~~~~~~~~~~~~a~spDG~~~l~vt----~~~d~~v~v~D~~tg 351 (373)
T d2madh_ 310 TSSQISLGHDVDAISVAQDGGPDLYAL----SAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEEecCCCCeeEEEECCCCCEEEEEE----eCCCCeEEEEECCCC
Confidence 999999989999999999999765442 233478999987543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=7.5e-13 Score=158.99 Aligned_cols=189 Identities=11% Similarity=0.034 Sum_probs=137.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEe---ccc
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSF---EGC 1595 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf---~gh 1595 (1922)
+.-++++.+.||+|.|||..+++++.++..| ..+..+ .|||||+++++ +.|++|++||+.+.....+..+ .++
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v--~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHIS--RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEE--EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEE--EECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence 3335689999999999999999999999877 468999 89999999998 4599999999987322222332 234
Q ss_pred ----eeEEEcCCCCEEE-EeecCCCCCeEEEEECCCCceeeeeccccccc----cCCCCcceEEEEcCCCCeEeecc---
Q 000177 1596 ----KAARFSNSGNLFA-ALPTETSDRGILLYDIQTYQLEAKLSDTSVNL----TGRGHAYSQIHFSPSDTMLLWNG--- 1663 (1922)
Q Consensus 1596 ----~sVaFSPDG~~La-SgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~----~~~gh~~~vVaFSPdG~lLaSgg--- 1663 (1922)
.+..|+|||++++ ++ ..+++|++||..+++.+..+....... .........+.++|+|..++...
T Consensus 108 ~~~~~s~~~SpDG~~l~vs~---~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~ 184 (432)
T d1qksa2 108 RSIETSKMEGWEDKYAIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 184 (432)
T ss_dssp EEEEECCSTTCTTTEEEEEE---EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCeEEecccCCCCCEEEEEc---CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence 3456678999874 55 678999999999999988775211110 01122223388999998766432
Q ss_pred ---EEEEcCCCcceeeeccC-CCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEc
Q 000177 1664 ---ILWDRRNSVPVHRFDQF-TDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh-~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~ 1714 (1922)
.+||..+++........ .... .+.|+|+|+++++++ .+||..+++.+..+.
T Consensus 185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence 78888887754433322 2233 899999999998888 389999998888775
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.5e-12 Score=143.32 Aligned_cols=254 Identities=11% Similarity=0.152 Sum_probs=162.2
Q ss_pred EEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEeccCCCCCCcceEecc----
Q 000177 1523 HIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWNASSIAGGPMHSFEG---- 1594 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWDl~t~~gk~l~tf~g---- 1594 (1922)
.+++++.|++|+||++++...+..+ ..|.+.|..| +|+|||++|++ +. |+.|++|++.. .....++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~l--a~spDG~~L~v~~~~d~~i~~~~i~~--~~~~~~~~~~~~~ 81 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAP--DDGALTFAAESAL 81 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCE--EECTTSSEEEEEETTTTEEEEEEECT--TTCCEEEEEEEEC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEE--EEeCCCCEEEEEECCCCeEEEEEEeC--CCCcEEEeeeccc
Confidence 4578889999999999866544433 4688999999 89999998865 43 89999999986 332222221
Q ss_pred ---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EE
Q 000177 1595 ---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------IL 1665 (1922)
Q Consensus 1595 ---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rL 1665 (1922)
..+++|+|||+++++++ ..++.|.+|+............ .........+.|+|++++++..+ .+
T Consensus 82 ~~~p~~l~~spDg~~l~v~~--~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~ 154 (333)
T d1ri6a_ 82 PGSLTHISTDHQGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDV-----VEGLDGCHSANISPDNRTLWVPALKQDRICL 154 (333)
T ss_dssp SSCCSEEEECTTSSEEEEEE--TTTTEEEEEEEETTEEEEEEEE-----ECCCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred CCCceEEEEcCCCCEEeecc--cCCCceeeeccccccceecccc-----cCCCccceEEEeeecceeeeccccccceeeE
Confidence 36799999999998873 3578899999887655444320 00112223388999999888665 67
Q ss_pred EEcCCCcceeee-----c-cCCCc-eEEEEecCCCEEEEEe------EEEecCC----CeEEEEEcCC----Cc----ee
Q 000177 1666 WDRRNSVPVHRF-----D-QFTDH-GGGGFHPAGNEVIINS------EVWDLRK----FRLLRSVPSL----DQ----TT 1720 (1922)
Q Consensus 1666 WDlrtgk~I~kf-----~-gh~~~-VsVaFSPdG~~LASGS------eIWDLrT----gklL~tl~gH----~~----~s 1720 (1922)
|+.......... . ..... ..+.|++++.+++... .+|++.. .....++... .. ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (333)
T d1ri6a_ 155 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 234 (333)
T ss_dssp EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred EEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccccee
Confidence 887765432211 1 11122 3799999999887765 3666543 2233333211 11 57
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC---C-ceeeeeccCCceEEEEEcCCCceEEEEecC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN---Y-SDIATIPVDRCVLDFATERTDSFVGLITMD 1796 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d---y-s~IaTidvkr~I~dLa~SPdds~LAVVe~d 1796 (1922)
++++++|++++...... ....+|+... . ...........+.+++|+|+|+++.+...+
T Consensus 235 ~~~s~d~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~ 296 (333)
T d1ri6a_ 235 IHITPDGRHLYACDRTA------------------SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK 296 (333)
T ss_dssp EEECTTSSEEEEEETTT------------------TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT
T ss_pred EEEecccCceeeecccC------------------CeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC
Confidence 88999999998874322 1122222111 1 112223334557789999999998876322
Q ss_pred CCCCccceEEEEEe
Q 000177 1797 DQEDMFSSARIYEI 1810 (1922)
Q Consensus 1797 ds~d~dSsVRLyEV 1810 (1922)
+..+++|++
T Consensus 297 -----~~~v~v~~i 305 (333)
T d1ri6a_ 297 -----SHHISVYEI 305 (333)
T ss_dssp -----TCEEEEEEE
T ss_pred -----CCeEEEEEE
Confidence 256889876
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.48 E-value=2e-12 Score=146.09 Aligned_cols=277 Identities=9% Similarity=0.001 Sum_probs=184.6
Q ss_pred CEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e----------cCC
Q 000177 1511 LLTCITFLGDSSHIAVGS-----HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S----------SSQ 1574 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS-----~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S----------sDg 1574 (1922)
++.-.+.+|||+.+++.. .+.+|.+||..+++.+.++..+..+ .+ +|||||++|+. + .|+
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~--a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NP--VVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EE--EECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ce--EEcCCCCEEEEEeCCCccccccCCCC
Confidence 344456789999987753 4667999999999999988766544 67 88999997765 2 267
Q ss_pred cEEEeccCCCCCCcceEecc-----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1575 DVHLWNASSIAGGPMHSFEG-----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g-----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
.|++||+.+ ++++..+.. ...+.|+|++++++.+.. +.+..+.+||..+++.+.++..+.......
T Consensus 79 ~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d2bbkh_ 79 YVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 155 (355)
T ss_dssp EEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred EEEEEECCC--CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC-CCCceeeeeecCCCcEeeEEecCCcceEee
Confidence 899999998 676665532 256899999998887633 467889999999999888775211100000
Q ss_pred CCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE-
Q 000177 1644 GHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL- 1710 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL- 1710 (1922)
......+.++++++.++... .+++....... +...+ ...+.+++..++..+ .+|++.+++..
T Consensus 156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 230 (355)
T d2bbkh_ 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF 230 (355)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-----TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE
T ss_pred cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce-----ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE
Confidence 11122377888887776432 44444433221 11222 456677777776665 48888876532
Q ss_pred -EEEcCCC------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCc
Q 000177 1711 -RSVPSLD------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRC 1777 (1922)
Q Consensus 1711 -~tl~gH~------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~ 1777 (1922)
.....+. ...+++++++..++.......... .......+.+||..+.+.+.++.....
T Consensus 231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~v~v~d~~t~~~~~~~~~~~~ 301 (355)
T d2bbkh_ 231 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR---------HKTASRFVVVLDAKTGERLAKFEMGHE 301 (355)
T ss_dssp CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC---------TTSCEEEEEEEETTTCCEEEEEEEEEE
T ss_pred EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee---------ecCCCCeEEEEeCCCCcEEEEecCCCC
Confidence 2222221 146899999999988754332111 112345788999999999999988888
Q ss_pred eEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+..++|+|+|+.+.++. ...+..+++|++..
T Consensus 302 ~~~~a~spDG~~~l~v~----~~~d~~i~v~D~~t 332 (355)
T d2bbkh_ 302 IDSINVSQDEKPLLYAL----STGDKTLYIHDAES 332 (355)
T ss_dssp ECEEEECCSSSCEEEEE----ETTTTEEEEEETTT
T ss_pred EEEEEEcCCCCeEEEEE----ECCCCEEEEEECCC
Confidence 99999999998654443 22346789998643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.45 E-value=3.3e-11 Score=137.50 Aligned_cols=266 Identities=11% Similarity=-0.027 Sum_probs=176.8
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccCCCCeeEEE-
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSHQAPVTLVQ- 1558 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gHss~VtsLq- 1558 (1922)
.+.+.....+.+.++..|. . ..++|+|||++|++++ .++.|.|||..+++.+..+..|......+.
T Consensus 49 v~v~D~~tg~~~~~~~~~~-~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~ 125 (373)
T d2madh_ 49 QWVLDAGSGSILGHVNGGF-L--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEECCCCCEEEEEeCCC-C--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEecc
Confidence 3444456778888887766 3 3799999999998875 467899999999999888877665543320
Q ss_pred ----eeecCCCcEEEE-e--cCCcEEEeccCCCCCCcceEeccceeEEEcCCCCEE-EEeecCCCCCeEEEEECCCCcee
Q 000177 1559 ----SHLSGETQLLLS-S--SSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLF-AALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1559 ----~afSpDG~lLaS-S--sDgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~L-aSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
..|+++++.+.. . .++.+.+|+... .+.........++.|+|+++.+ ++. +.|+++.+||..++...
T Consensus 126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~~~v~~---~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGG--SSDDQLLSSPTCYHIHPGAPSTFYLL---CAQGGLAKTDHAGGAAG 200 (373)
T ss_pred CCCcEEEEeCCCcEEEEEEcCCCceEEeeccC--CeEEEEeccceeEEEecCCCcEEEEE---cCCCeEEEEEcCCceee
Confidence 167788876654 2 367888999876 5556666667889999998765 455 78899999999988877
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcce--eeeccCCC-----------ceEEEEecCCC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPV--HRFDQFTD-----------HGGGGFHPAGN 1693 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I--~kf~gh~~-----------~VsVaFSPdG~ 1693 (1922)
....... ...........+.+++++.+++... .+|+..++... ..+..+.. ...+.++|++.
T Consensus 201 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 279 (373)
T d2madh_ 201 AGLVGAM-LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred EEEeeec-cccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCC
Confidence 6654111 1101111122266777776665433 67777665422 22222111 11457777777
Q ss_pred EEEEEe---------------EEEecCCCeEEEEEcCCC-ceeEEEccCCCEE-EEEEccCchhhhhhhcccccccCCcc
Q 000177 1694 EVIINS---------------EVWDLRKFRLLRSVPSLD-QTTITFNARGDVI-YAILRRNLEDVMSAVHTRRVKHPLFA 1756 (1922)
Q Consensus 1694 ~LASGS---------------eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~L-aSgs~~d~~dv~s~lh~rr~ksp~~s 1756 (1922)
.++... .+||+.+++.+..+.... ...++|+|||+.+ ++... .+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~------------------~d~ 341 (373)
T d2madh_ 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA------------------GTE 341 (373)
T ss_pred eEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeC------------------CCC
Confidence 655432 389999999999887433 3899999999864 43321 234
Q ss_pred eEEEEecCCCceeeeecc-CCceEEEE
Q 000177 1757 AFRTVDAINYSDIATIPV-DRCVLDFA 1782 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTidv-kr~I~dLa 1782 (1922)
.+++||..+.+.+.+++. .+....++
T Consensus 342 ~v~v~D~~tg~~~~~~~~~g~~P~~l~ 368 (373)
T d2madh_ 342 VLHIYDAGAGDQDQSTVELGSGPQVLS 368 (373)
T ss_pred eEEEEECCCCCEEEEECCCCCCCcEEE
Confidence 578999999998888863 34444443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=9.2e-12 Score=138.64 Aligned_cols=221 Identities=14% Similarity=0.189 Sum_probs=145.3
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceeee---ccCCCCeeEEEeeecCCCcEEEEe--cCCcEEEe
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLESC---TSHQAPVTLVQSHLSGETQLLLSS--SSQDVHLW 1579 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~tL---~gHss~VtsLq~afSpDG~lLaSS--sDgtVkLW 1579 (1922)
.|. +.|..++|||||++|++++ .|+.|++|++.......++ ..+...+..+ +|+|||++|+++ .+++|.+|
T Consensus 34 ~~~-~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l--~~spDg~~l~v~~~~~~~v~~~ 110 (333)
T d1ri6a_ 34 DVP-GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHI--STDHQGQFVFVGSYNAGNVSVT 110 (333)
T ss_dssp ECS-SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEE--EECTTSSEEEEEETTTTEEEEE
T ss_pred cCC-CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEE--EEcCCCCEEeecccCCCceeee
Confidence 577 7899999999999986555 5899999999876654443 2344557778 899999998885 37789999
Q ss_pred ccCCCCCCcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEc
Q 000177 1580 NASSIAGGPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
+... ........ ..+++.|+|++++++.+. ..+..|.+|+..+........... .....+.....++|+
T Consensus 111 ~~~~--~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~g~~p~~i~~~ 185 (333)
T d1ri6a_ 111 RLED--GLPVGVVDVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTVSDDGHLVAQDPAE-VTTVEGAGPRHMVFH 185 (333)
T ss_dssp EEET--TEEEEEEEEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEEE-EECSTTCCEEEEEEC
T ss_pred cccc--ccceecccccCCCccceEEEeeecceeeeccc--cccceeeEEEeccCCcceeeecee-eeeecCCCccEEEEe
Confidence 8875 32222211 237799999999888873 345789999987755433222111 111123334459999
Q ss_pred CCCCeEeecc------EEEEcCCCcc----eeeecc----C--CCc-eEEEEecCCCEEEEEe------EEEecCCCeEE
Q 000177 1654 PSDTMLLWNG------ILWDRRNSVP----VHRFDQ----F--TDH-GGGGFHPAGNEVIINS------EVWDLRKFRLL 1710 (1922)
Q Consensus 1654 PdG~lLaSgg------rLWDlrtgk~----I~kf~g----h--~~~-VsVaFSPdG~~LASGS------eIWDLrTgklL 1710 (1922)
+++.+++... .+|++..... ...... . ... ..+.+++++++++... .+|++......
T Consensus 186 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (333)
T d1ri6a_ 186 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV 265 (333)
T ss_dssp TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE
Confidence 9998877443 6777654321 111111 1 112 2688999999887765 48887654322
Q ss_pred EEEc---CC--CceeEEEccCCCEEEEEE
Q 000177 1711 RSVP---SL--DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1711 ~tl~---gH--~~~sVaFSPdG~~LaSgs 1734 (1922)
..+. .. ....++|+|+|++|+++.
T Consensus 266 ~~~~~~~~~~~~p~~~a~spDGk~l~va~ 294 (333)
T d1ri6a_ 266 LSKEGFQPTETQPRGFNVDHSGKYLIAAG 294 (333)
T ss_dssp EEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred EEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence 2222 12 126899999999999873
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=5.9e-10 Score=125.47 Aligned_cols=244 Identities=14% Similarity=0.082 Sum_probs=158.9
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCCceeeeccCCC-------Ce
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVG----------SHTKELKIFDSNSSSPLESCTSHQA-------PV 1554 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASG----------S~DGtIkIWDl~tgk~l~tL~gHss-------~V 1554 (1922)
.+....++++.++..+. +..++|||||++|++. +.|+.|++||+.+++.+..+..+.. ..
T Consensus 32 v~D~~tg~~~~~~~~g~---~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~ 108 (355)
T d2bbkh_ 32 VIDGEAGRVIGMIDGGF---LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP 108 (355)
T ss_dssp EEETTTTEEEEEEEECS---SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred EEECCCCcEEEEEECCC---CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCC
Confidence 34456778888887765 3379999999988764 4588999999999998887754332 23
Q ss_pred eEEEeeecCCCcEEEEe---cCCcEEEeccCCCCCCcceEeccc-----------eeEEEcCCCCEEEEeecCCCCCeEE
Q 000177 1555 TLVQSHLSGETQLLLSS---SSQDVHLWNASSIAGGPMHSFEGC-----------KAARFSNSGNLFAALPTETSDRGIL 1620 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaSS---sDgtVkLWDl~t~~gk~l~tf~gh-----------~sVaFSPDG~~LaSgS~~S~DgtIr 1620 (1922)
..+ .|++++++++.. .+..+.+|+..+ ++.+..+... ..+.|+++++.++... ..++.+.
T Consensus 109 ~~~--~~s~dg~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~--~~~~~~~ 182 (355)
T d2bbkh_ 109 WMT--SLTPDGKTLLFYQFSPAPAVGVVDLEG--KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF--GTEGTPE 182 (355)
T ss_dssp GGE--EECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEEC--CSSSCCE
T ss_pred ceE--EEecCCCeeEEecCCCCceeeeeecCC--CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEe--cCCCeEE
Confidence 456 789999987663 367899999987 6666555432 3355666666555431 2334455
Q ss_pred EEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcc--eeeeccCC-----------C
Q 000177 1621 LYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVP--VHRFDQFT-----------D 1682 (1922)
Q Consensus 1621 IWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~--I~kf~gh~-----------~ 1682 (1922)
+++..+..... ........+++++..++..+ ++|++..++. +.....+. .
T Consensus 183 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 250 (355)
T d2bbkh_ 183 ITHTEVFHPED------------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250 (355)
T ss_dssp EEECCCCSCTT------------SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS
T ss_pred EEeccccccee------------cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccc
Confidence 55544332211 11122245566666555433 8899887653 22222221 1
Q ss_pred ceEEEEecCCCEEEEEe---------------EEEecCCCeEEEEEcCCCc-eeEEEccCCCE-EEEEEccCchhhhhhh
Q 000177 1683 HGGGGFHPAGNEVIINS---------------EVWDLRKFRLLRSVPSLDQ-TTITFNARGDV-IYAILRRNLEDVMSAV 1745 (1922)
Q Consensus 1683 ~VsVaFSPdG~~LASGS---------------eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~-LaSgs~~d~~dv~s~l 1745 (1922)
...+.++|++..++..+ .+||+.+++.+.+++.... .+++|+|+|+. ++++..
T Consensus 251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~---------- 320 (355)
T d2bbkh_ 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST---------- 320 (355)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET----------
T ss_pred eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEEC----------
Confidence 11588999999887654 3899999999988874333 79999999984 444421
Q ss_pred cccccccCCcceEEEEecCCCceeeeecc
Q 000177 1746 HTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1746 h~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
....+++||..+.+.+.++..
T Consensus 321 --------~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 321 --------GDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp --------TTTEEEEEETTTCCEEEEECC
T ss_pred --------CCCEEEEEECCCCCEEEEEeC
Confidence 235678899888888877753
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.24 E-value=3.5e-10 Score=130.55 Aligned_cols=260 Identities=10% Similarity=0.004 Sum_probs=172.6
Q ss_pred ccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccCCCC-----
Q 000177 1489 RDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSHQAP----- 1553 (1922)
Q Consensus 1489 ~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gHss~----- 1553 (1922)
..+.+.....+.+.++.+|. .. .++|+|||++|++.+ .|++|++||..+++++..+..|...
T Consensus 47 ~~~~~d~~~~~~~~~~~~~~-~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g 123 (368)
T d1mdah_ 47 ENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEeCCCCcEEEEEeCCC-CC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceeccc
Confidence 34445556777788887776 43 589999999888755 4788999999999998877544332
Q ss_pred --eeEEEeeecCCCcEEEEe--cCCcEEEeccCCCCCCcceEeccceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCc
Q 000177 1554 --VTLVQSHLSGETQLLLSS--SSQDVHLWNASSIAGGPMHSFEGCKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1554 --VtsLq~afSpDG~lLaSS--sDgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
...+ .|+|||++|+.+ .++.+.+||+.+ ++.+..+....+..+.|.+ ..++.. +.|+++.+|++....
T Consensus 124 ~~p~~~--a~SpDGk~l~va~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~---~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 124 PRVHII--GNCASSACLLFFLFGSSAAAGLSVPG--ASDDQLTKSASCFHIHPGAAATHYLG---SCPASLAASDLAAAP 196 (368)
T ss_dssp CCTTSE--EECTTSSCEEEEECSSSCEEEEEETT--TEEEEEEECSSCCCCEEEETTEEECC---CCTTSCEEEECCSSC
T ss_pred CCccce--EECCCCCEEEEEeCCCCeEEEEECCC--CcEeEEeeccCcceEccCCCceEEEE---cCCCCEEEEEecCCc
Confidence 2356 789999988764 489999999998 7777776655444444443 445554 678888888887654
Q ss_pred eeeeeccccccccCCCCcceEEEEcCCCCeEeecc---EEEEcCCCcceee--eccCC-----------CceEEEEecCC
Q 000177 1629 LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---ILWDRRNSVPVHR--FDQFT-----------DHGGGGFHPAG 1692 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---rLWDlrtgk~I~k--f~gh~-----------~~VsVaFSPdG 1692 (1922)
.......... ..........+.+.+++..+.+.+ .++++..+..... ...+. ....++++|++
T Consensus 197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 275 (368)
T d1mdah_ 197 AAAGIVGAQC-TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp CCCEECCCCS-CTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred eeeeeeeccc-ccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCC
Confidence 4333221000 001112222377888888877655 6666665543221 11111 11257899999
Q ss_pred CEEEEEe--------------EEEecCCCeEEEEEcCCCc-eeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcc
Q 000177 1693 NEVIINS--------------EVWDLRKFRLLRSVPSLDQ-TTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFA 1756 (1922)
Q Consensus 1693 ~~LASGS--------------eIWDLrTgklL~tl~gH~~-~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~s 1756 (1922)
..++... .+||..+++.+.++..... ..++|+|||+ ++|+... ...
T Consensus 276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~------------------~~~ 337 (368)
T d1mdah_ 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA------------------GTE 337 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET------------------TTT
T ss_pred CEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeC------------------CCC
Confidence 8776543 2899999999888774333 7899999997 5666532 234
Q ss_pred eEEEEecCCCceeeeeccCCc
Q 000177 1757 AFRTVDAINYSDIATIPVDRC 1777 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTidvkr~ 1777 (1922)
.+++||..+.+.+.++++...
T Consensus 338 ~v~v~D~~tgk~~~~i~~g~~ 358 (368)
T d1mdah_ 338 VLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EEEEEESSSCEEEEECCCCSC
T ss_pred eEEEEECCCCCEEEEEECCCC
Confidence 688999999998888876543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.20 E-value=1.9e-10 Score=132.75 Aligned_cols=276 Identities=8% Similarity=-0.120 Sum_probs=174.2
Q ss_pred CCEEEEEEcCCCCEE---EEEeCCCc--EEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------C
Q 000177 1510 ALLTCITFLGDSSHI---AVGSHTKE--LKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------S 1573 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lL---ASGS~DGt--IkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------D 1573 (1922)
+....++..++++.. ++...+|+ |.+||..+++.+.++.++..+ .+ .|+|||+.|+.++ |
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~--a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LA--VAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EE--EECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cc--eECCCCCEEEEEcccCccccccccC
Confidence 555566678888853 22345555 666799999998888776654 46 7899999887632 5
Q ss_pred CcEEEeccCCCCCCcceEecc-----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG-----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g-----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
++|.+||..+ ++++..+.. ...++|+|||++++++. ..++.+.+||+.+++....+..+......
T Consensus 96 ~~v~v~D~~t--~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~--~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 171 (368)
T d1mdah_ 96 DYVEVFDPVT--FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL--FGSSAAAGLSVPGASDDQLTKSASCFHIH 171 (368)
T ss_dssp EEEEEECTTT--CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE--CSSSCEEEEEETTTEEEEEEECSSCCCCE
T ss_pred CeEEEEECCC--CcEeeeecCCccceecccCCccceEECCCCCEEEEEe--CCCCeEEEEECCCCcEeEEeeccCcceEc
Confidence 6799999988 777665532 25799999999998762 35789999999999988877522111100
Q ss_pred CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe---EEEecCCCeEEEE-
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---EVWDLRKFRLLRS- 1712 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~t- 1712 (1922)
.......+.++++|.+++... ..|-... ..+..+.... .+.+++++..+.+.+ .++++........
T Consensus 172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~ 247 (368)
T d1mdah_ 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA 247 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCC----CSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEEC
T ss_pred cCCCceEEEEcCCCCEEEEEecCCceeeeeeec----ccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEe
Confidence 111223366777777655332 2221111 1122222222 667777777666554 2455544433221
Q ss_pred -EcCCC------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceE
Q 000177 1713 -VPSLD------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVL 1779 (1922)
Q Consensus 1713 -l~gH~------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~ 1779 (1922)
...+. ...++++|++..++......... .......+.+||..+.+.+.++.....+.
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~----------~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 317 (368)
T d1mdah_ 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS----------CLAAAENTSSVTASVGQTSGPISNGHDSD 317 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC----------TTSCEEEEEEEESSSCCEEECCEEEEEEC
T ss_pred ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCce----------eecCCceEEEEECCCCcEeEEecCCCcee
Confidence 11111 14689999999988764322111 11133567889999999999998888899
Q ss_pred EEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1780 DFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1780 dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.++|+|+|+.+..+. ...+..+++|++.
T Consensus 318 ~~a~spDG~~~ly~s----~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 318 AIIAAQDGASDNYAN----SAGTEVLDIYDAA 345 (368)
T ss_dssp EEEECCSSSCEEEEE----ETTTTEEEEEESS
T ss_pred EEEECCCCCEEEEEE----eCCCCeEEEEECC
Confidence 999999997543332 1223679999864
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.06 E-value=6.2e-09 Score=123.87 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=82.4
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSH---------TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~---------DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
+|..|. ..|.++.|||||++|+.++. ++.+.|||+.+++ +..+..|...+..+ .|||||+.|+...+
T Consensus 56 ~~~~~~-~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~--~~SPDG~~ia~~~~ 131 (470)
T d2bgra1 56 TFDEFG-HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWV--TWSPVGHKLAYVWN 131 (470)
T ss_dssp TTTTSS-SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEE--EECSSTTCEEEEET
T ss_pred hhhhcc-CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCcccccc--ccccCcceeeEeec
Confidence 345566 78999999999999998853 5788999998876 45688899999999 89999999999999
Q ss_pred CcEEEeccCCCCCCcceEec---------c-------------ceeEEEcCCCCEEEEee
Q 000177 1574 QDVHLWNASSIAGGPMHSFE---------G-------------CKAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~---------g-------------h~sVaFSPDG~~LaSgS 1611 (1922)
+.+.+|+... +...+... + ...+.|+|||++|++..
T Consensus 132 ~~l~~~~~~~--g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 132 NDIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp TEEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred ccceEEECCC--CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 9999999987 44333221 1 14577999999999874
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.78 E-value=8.1e-09 Score=124.63 Aligned_cols=251 Identities=11% Similarity=0.008 Sum_probs=157.9
Q ss_pred EEEEeCCCcEEEEECCCCCceeeecc------------------------------CCCCeeEEEeeecCCCcEEEEe--
Q 000177 1524 IAVGSHTKELKIFDSNSSSPLESCTS------------------------------HQAPVTLVQSHLSGETQLLLSS-- 1571 (1922)
Q Consensus 1524 LASGS~DGtIkIWDl~tgk~l~tL~g------------------------------Hss~VtsLq~afSpDG~lLaSS-- 1571 (1922)
++||+.+|+|.||++.+++.++++.- |...+... .++|||++|...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t--~gtpDGr~lfV~d~ 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMT--DGRYDGKYLFINDK 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEE--TTEEEEEEEEEEET
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCccee--cccCCCCEEEEEcC
Confidence 57888999999999988877665421 23333444 567899999774
Q ss_pred cCCcEEEeccCCCCCCcceEec-----cceeEEEcCCCCEEEEeecCCCC-----------------CeEEEEECCCCce
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFE-----GCKAARFSNSGNLFAALPTETSD-----------------RGILLYDIQTYQL 1629 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~-----gh~sVaFSPDG~~LaSgS~~S~D-----------------gtIrIWDlrTgk~ 1629 (1922)
.+.+|.+||+.+ .++...+. +.+.++|+|+|++.++... +.+ ..+..+|..+.+.
T Consensus 92 ~~~rVavIDl~t--~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~-~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v 168 (441)
T d1qnia2 92 ANTRVARIRLDI--MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCN-AEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV 168 (441)
T ss_dssp TTTEEEEEETTT--TEEEEEEECTTCCCEEEEEECCSSBCCEEEEE-ECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred CCCEEEEEECCC--CcEeeEEecCCCCCccceEEeccCCEEEEEec-cCCcccccCcccccccccccceEEeecCcccee
Confidence 488999999998 65555432 3578999999984332211 211 2345678888777
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS---- 1699 (1922)
..++. .+.....+.|+|+|+++++.+ ..++..+.+.+..+...+....+.++|+|+++.+++
T Consensus 169 ~~qI~--------v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~ 240 (441)
T d1qnia2 169 AWQVI--------VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP 240 (441)
T ss_dssp EEEEE--------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred eEEEe--------cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence 66654 122233399999999988554 333444444433332222222456789999888765
Q ss_pred EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC----------Cce
Q 000177 1700 EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN----------YSD 1768 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d----------ys~ 1768 (1922)
.||+..+.+.+.+++.... ..+.++|||++++++.. +...+.++|... +..
T Consensus 241 vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~------------------~~~tvsv~d~~k~~~~~~~~~~~~~ 302 (441)
T d1qnia2 241 VVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGK------------------LSPTVSVIAIDKLDDLFEDKIELRD 302 (441)
T ss_dssp EEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECT------------------TSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred EEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCC------------------cCCcEEEEEeehhhhHhhccCCcce
Confidence 3777777788889986555 79999999999998732 122333333221 111
Q ss_pred --eeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1769 --IATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1769 --IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+..+........+|+++|..... ...++.|..|.++
T Consensus 303 ~~~~~~~~glgplh~~fd~~g~~yts------~~~ds~v~kw~~~ 341 (441)
T d1qnia2 303 TIVAEPELGLGPLHTTFDGRGNAYTT------LFIDSQVCKWNIA 341 (441)
T ss_dssp GEEECCBCCSCEEEEEECSSSEEEEE------ETTTTEEEEEEHH
T ss_pred EEEeecccccCcccceecCCceEEEc------ccccceEEEeccc
Confidence 122223334566778888754332 3345778888874
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.65 E-value=1.4e-06 Score=103.32 Aligned_cols=139 Identities=13% Similarity=0.180 Sum_probs=99.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-----ccCCCCeeEEEeeecCCCcEEEEec----------CCcEEE
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-----TSHQAPVTLVQSHLSGETQLLLSSS----------SQDVHL 1578 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-----~gHss~VtsLq~afSpDG~lLaSSs----------DgtVkL 1578 (1922)
.+.|.++++++.. .|+.|.+||+.+++....+ ..|...|.++ .|||||++|+... ++.+.|
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~--~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDY--SISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEE--EECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCcccee--EECCCCCEEEEEECCcceeeeccCceEEE
Confidence 4779999988764 5788999999999876544 4556889999 8999999988742 457889
Q ss_pred eccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc--cC---------C
Q 000177 1579 WNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL--TG---------R 1643 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~--~~---------~ 1643 (1922)
||+.+ ++ +..+.. ...+.|||||++|+.. .++.+.+|+..+++............ .+ .
T Consensus 97 ~d~~~--~~-~~~l~~~~~~~~~~~~SPDG~~ia~~----~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~ 169 (470)
T d2bgra1 97 YDLNK--RQ-LITEERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (470)
T ss_dssp EETTT--TE-ECCSSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred EECCC--Cc-ccccccCCccccccccccCcceeeEe----ecccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence 99987 43 333333 4789999999999995 46789999999887765443111000 00 0
Q ss_pred CCcceEEEEcCCCCeEeecc
Q 000177 1644 GHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLaSgg 1663 (1922)
......+.|||||+.|+...
T Consensus 170 ~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 170 FSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp SSSSBCEEECTTSSEEEEEE
T ss_pred cCCccccEECCCCCccceeE
Confidence 01122378999999998643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=9.2e-06 Score=88.00 Aligned_cols=224 Identities=13% Similarity=0.098 Sum_probs=124.8
Q ss_pred cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--C--CcEEEeccCCCCCCcceEec---c-ceeEEEcCC
Q 000177 1532 ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--S--QDVHLWNASSIAGGPMHSFE---G-CKAARFSNS 1603 (1922)
Q Consensus 1532 tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--D--gtVkLWDl~t~~gk~l~tf~---g-h~sVaFSPD 1603 (1922)
.|.|.|.+ |.....+..+...+.+- +|||||+.|+... . ..+.+.+... +.. ..+. + .....|+|+
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP--~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~spd 93 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSP--AWSPDGSKLAYVTFESGRSALVIQTLAN--GAV-RQVASFPRHNGAPAFSPD 93 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEE--EECTTSSEEEEEECTTSSCEEEEEETTT--CCE-EEEECCSSCEEEEEECTT
T ss_pred EEEEEcCC-CCCcEEEecCCCceeee--EECCCCCEEEEEEeeccCcceeeeeccc--Cce-eEEeeeecccccceecCC
Confidence 57777775 44444444456667776 8999999998742 2 2455556554 322 2222 1 367899999
Q ss_pred CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCccee
Q 000177 1604 GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVH 1675 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~ 1675 (1922)
|+.++..........+..+............ .........+++++..++..+ .++++..+.. .
T Consensus 94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~ 164 (269)
T d2hqsa1 94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTD--------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-Q 164 (269)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEECCC--------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-E
T ss_pred CCeeeEeeecCCccceeecccccccceeeee--------ccccccccccccccccceecccccCCceEeeeecccccc-e
Confidence 9998887443333334444444333322221 122223367777777665332 3444444432 2
Q ss_pred eeccCCCce-EEEEecCCCEEEEEeE------EE--ecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhc
Q 000177 1676 RFDQFTDHG-GGGFHPAGNEVIINSE------VW--DLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVH 1746 (1922)
Q Consensus 1676 kf~gh~~~V-sVaFSPdG~~LASGSe------IW--DLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh 1746 (1922)
......... ...|+|+|++++..+. +| +..++....+..........|||||+.|+-....+
T Consensus 165 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~--------- 235 (269)
T d2hqsa1 165 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG--------- 235 (269)
T ss_dssp ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEET---------
T ss_pred eeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCC---------
Confidence 233333333 7899999999988772 44 44444332222222336889999999998654322
Q ss_pred ccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1747 TRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1747 ~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
....+.+++...............+...+|+|-
T Consensus 236 -------~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 236 -------MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp -------TEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred -------CCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence 112345555444333333334556778889883
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.61 E-value=2.4e-07 Score=111.70 Aligned_cols=222 Identities=7% Similarity=0.015 Sum_probs=141.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCc--EEEEecCCcE------
Q 000177 1507 DAGALLTCITFLGDSSHIAVG-SHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQ--LLLSSSSQDV------ 1576 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASG-S~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~--lLaSSsDgtV------ 1576 (1922)
|. -.+.+..++|||++|++. ..+..|.+||+.++++...+. .+...+..+ .|+|+++ |++......+
T Consensus 70 hh-P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi--~~spdg~t~YV~~~~~~~v~~~~dg 146 (441)
T d1qnia2 70 HH-PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGL--RLQKVPKTNYVFCNAEFVIPQPNDG 146 (441)
T ss_dssp CC-CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEE--EECCSSBCCEEEEEECSCEESSCSS
T ss_pred cC-CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccce--EEeccCCEEEEEeccCCcccccCcc
Confidence 44 456677778999998665 477899999999999888764 467789999 8899988 5555433333
Q ss_pred ------------EEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCC--------------------------
Q 000177 1577 ------------HLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETS-------------------------- 1615 (1922)
Q Consensus 1577 ------------kLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~-------------------------- 1615 (1922)
..+|..+ .+...++. ....+.|+|+|+++++++.++.
T Consensus 147 ~~~~~~~~~~~~~~iD~~t--~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~ 224 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAET--MDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224 (441)
T ss_dssp SCCCGGGEEEEEEEEETTT--CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred cccccccccceEEeecCcc--ceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence 3356655 34333332 2367999999998887754331
Q ss_pred ------------CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcc----
Q 000177 1616 ------------DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVP---- 1673 (1922)
Q Consensus 1616 ------------DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~---- 1673 (1922)
++.+.|++..+.+.+.+++ .+..-.-+.++|||++++.++ .+||+.+...
T Consensus 225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IP--------vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~ 296 (441)
T d1qnia2 225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIP--------VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED 296 (441)
T ss_dssp HHHTTCCBCCTTCCCCEEECSSSCSSEEEEC--------CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred EecCCCEEEeCCCCcEEEEcccCCceEEEEe--------CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc
Confidence 3344455444444445443 111112289999999987655 8999875221
Q ss_pred ----eeeeccCCC----ceEEEEecCCCEEEEEe-----EEEecC----------CCeEEEEEc-----CCCc--eeEEE
Q 000177 1674 ----VHRFDQFTD----HGGGGFHPAGNEVIINS-----EVWDLR----------KFRLLRSVP-----SLDQ--TTITF 1723 (1922)
Q Consensus 1674 ----I~kf~gh~~----~VsVaFSPdG~~LASGS-----eIWDLr----------TgklL~tl~-----gH~~--~sVaF 1723 (1922)
...+.++.. .....|.++|+.+.+.. ..|++. ....+..+. ||.. .+.+|
T Consensus 297 ~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~ 376 (441)
T d1qnia2 297 KIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESR 376 (441)
T ss_dssp SSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTST
T ss_pred cCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccccccc
Confidence 111212211 12568999997666654 378874 223555553 4443 57889
Q ss_pred ccCCCEEEEEEccCchhh
Q 000177 1724 NARGDVIYAILRRNLEDV 1741 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d~~dv 1741 (1922)
+|+|+||+++.+-..+.+
T Consensus 377 ~pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 377 DADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp TCCCCEEEEEESCCGGGS
T ss_pred CCCCcEEEecCccccccC
Confidence 999999999965444443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.1e-05 Score=87.38 Aligned_cols=215 Identities=12% Similarity=0.051 Sum_probs=126.3
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTK---ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS- 1572 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DG---tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs- 1572 (1922)
.++..+.+..+. ..+..-+|||||+.||-..... .+.+.+...+.. ..+..+...+... .|+|+|+.++...
T Consensus 27 dG~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~spdg~~i~~~~~ 102 (269)
T d2hqsa1 27 DGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAP--AFSPDGSKLAFALS 102 (269)
T ss_dssp TSCSCEEEEEES-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEE--EECTTSSEEEEEEC
T ss_pred CCCCcEEEecCC-CceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccc--eecCCCCeeeEeee
Confidence 444455555555 6788999999999998765443 366666655543 4455567777777 8899999888732
Q ss_pred -CCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1573 -SQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1573 -DgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++...++............... .....++++++.+...+.......|.++++.++....... ..-...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~--------~~~~~~ 174 (269)
T d2hqsa1 103 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW--------EGSQNQ 174 (269)
T ss_dssp TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC--------SSSEEE
T ss_pred cCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeec--------cccccc
Confidence 4333333332211222222211 2445677877766655333334456777777654433221 112223
Q ss_pred EEEEcCCCCeEeecc------EEE--EcCCCcceeeeccCCCceEEEEecCCCEEEEEe--------EEEecCCCeEEEE
Q 000177 1649 QIHFSPSDTMLLWNG------ILW--DRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--------EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg------rLW--Dlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--------eIWDLrTgklL~t 1712 (1922)
...|+|+++.++..+ .+| |...+. ...+..........|+|||++|+-.+ .+|++..+.. ..
T Consensus 175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~ 252 (269)
T d2hqsa1 175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-AR 252 (269)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EE
T ss_pred ccccccccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EE
Confidence 378999999988544 444 443333 23332222233789999999988666 2778876554 34
Q ss_pred EcCCCc--eeEEEcc
Q 000177 1713 VPSLDQ--TTITFNA 1725 (1922)
Q Consensus 1713 l~gH~~--~sVaFSP 1725 (1922)
+..... ...+|||
T Consensus 253 lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 253 LPATDGQVKFPAWSP 267 (269)
T ss_dssp CCCSSSEEEEEEECC
T ss_pred EeCCCCcEEeEEeCC
Confidence 443333 4678988
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.37 E-value=3.2e-05 Score=86.95 Aligned_cols=226 Identities=10% Similarity=0.053 Sum_probs=136.6
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
+.+.++... ..+..++++|||+++++...+++|..|+.. ++ ...+..+...+.++ +|++||++++++ .++.+.
T Consensus 19 ~v~~~~p~~--~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gl--a~~~dG~l~v~~~~~~~~~ 92 (302)
T d2p4oa1 19 KIITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGL--AFTSNGDLVATGWNADSIP 92 (302)
T ss_dssp EEEEEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEE--EECTTSCEEEEEECTTSCE
T ss_pred cEEEECCCC--CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceE--EEcCCCCeEEEecCCceEE
Confidence 334445432 247899999999999999999999888854 33 34455566788999 899999998885 577788
Q ss_pred EeccCCCCCCcceE--ec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc-cCCCCc--ceE
Q 000177 1578 LWNASSIAGGPMHS--FE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL-TGRGHA--YSQ 1649 (1922)
Q Consensus 1578 LWDl~t~~gk~l~t--f~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~-~~~gh~--~~v 1649 (1922)
+|+.....+..... .. ..+.+.+.++++++++. ..++.+..+|..++.....+....... ...... .+-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng 169 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTAD---SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 169 (302)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEE---TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred EEEecccccceeeccccCCccccceeEEccCCCEEeec---cccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence 88776522222111 11 13788999999988886 777889999988776443332211111 011111 122
Q ss_pred EEEcCCCCeEeecc---EEEEcC--CCcc---eeeeccCCCceEEEEecCCCEEEEEe---EEEecCC-CeEEEEEc---
Q 000177 1650 IHFSPSDTMLLWNG---ILWDRR--NSVP---VHRFDQFTDHGGGGFHPAGNEVIINS---EVWDLRK-FRLLRSVP--- 1714 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg---rLWDlr--tgk~---I~kf~gh~~~VsVaFSPdG~~LASGS---eIWDLrT-gklL~tl~--- 1714 (1922)
+.++.+ .++++.. ++|.+. .... ...+......-.++|.++|++.++.. +||-+.. ++......
T Consensus 170 i~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~ 248 (302)
T d2p4oa1 170 LKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQ 248 (302)
T ss_dssp EEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGG
T ss_pred ccccCC-ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCC
Confidence 555433 2223222 555443 2221 12222222233799999999776643 5666643 33332222
Q ss_pred CCCc-eeEEE---ccCCCEEEEEE
Q 000177 1715 SLDQ-TTITF---NARGDVIYAIL 1734 (1922)
Q Consensus 1715 gH~~-~sVaF---SPdG~~LaSgs 1734 (1922)
+... ++++| ++|++.||.+.
T Consensus 249 ~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 249 GVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CCCCceEEEEcCCCCCCCEEEEEC
Confidence 2222 79999 78889998764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.35 E-value=3.6e-05 Score=89.36 Aligned_cols=267 Identities=12% Similarity=0.107 Sum_probs=138.2
Q ss_pred EEEEEeC--CCcEEEEEC--CCCCce--eee-ccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec--
Q 000177 1523 HIAVGSH--TKELKIFDS--NSSSPL--ESC-TSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE-- 1593 (1922)
Q Consensus 1523 lLASGS~--DGtIkIWDl--~tgk~l--~tL-~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~-- 1593 (1922)
.|++|++ .+.|.++.+ ++++.. ... ..+...+..| +|++++++|.+...+.+..|.+... +.......
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~l--a~s~d~~~ly~~~~~~~~~~~i~~~-~~~~~~~~~~ 80 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWM--TFDHERKNIYGAAMKKWSSFAVKSP-TEIVHEASHP 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEE--EECTTSSEEEEEEBTEEEEEEEEET-TEEEEEEEEE
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEE--EEcCCCCEEEEEeCCcEEEEEEeCC-CCeEEEeeec
Confidence 3666654 445655444 444332 121 2344556678 8899999998877777888877651 22221111
Q ss_pred ---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cceeeee--cc------ccccc-cCCCCcceEEEEcCCCCeEe
Q 000177 1594 ---GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKL--SD------TSVNL-TGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1594 ---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL--~d------~s~~~-~~~gh~~~vVaFSPdG~lLa 1660 (1922)
....+.++++++.+.........++|..+.+.. +.....+ .. +.... ...+.....+.|+|+|++++
T Consensus 81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEE
Confidence 125688899988543321223345565554432 1111111 00 00000 00111123499999999888
Q ss_pred ecc------EEEEcC-CCcc--eeeecc---CCCceEEEEecCCCEEEEEe------EEEecCCCe--EEE---EEcCCC
Q 000177 1661 WNG------ILWDRR-NSVP--VHRFDQ---FTDHGGGGFHPAGNEVIINS------EVWDLRKFR--LLR---SVPSLD 1717 (1922)
Q Consensus 1661 Sgg------rLWDlr-tgk~--I~kf~g---h~~~VsVaFSPdG~~LASGS------eIWDLrTgk--lL~---tl~gH~ 1717 (1922)
+.. .+|+.. ++.. +..+.. ...+..++|+|+|+++.+.. .+|++...+ .+. +++-..
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccc
Confidence 655 444443 2322 222222 23344899999999987776 378876543 222 222100
Q ss_pred ----------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee---eee----cc
Q 000177 1718 ----------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI---ATI----PV 1774 (1922)
Q Consensus 1718 ----------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I---aTi----dv 1774 (1922)
...+.|+|+|++||++.+.+... ....+..+....-..+ ..+ ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~-------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 307 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE-------------LQGYIAGFKLRDCGSIEKQLFLSPTPTS 307 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT-------------SCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred ccccccccccccccCCccceEECCCCCEEEEEcccCCCc-------------cceEEEEEEecCCCceeeEeEeeEEEcC
Confidence 14689999999999885422110 0011222221111111 111 11
Q ss_pred CCceEEEEEcC-CCceEEEEecCCCCCccceEEEEEe
Q 000177 1775 DRCVLDFATER-TDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1775 kr~I~dLa~SP-dds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
...-..++++| +|+++.+... ....|.+|++
T Consensus 308 G~~p~~i~~~p~~G~~l~va~~-----~s~~v~v~~~ 339 (365)
T d1jofa_ 308 GGHSNAVSPCPWSDEWMAITDD-----QEGWLEIYRW 339 (365)
T ss_dssp CTTCCCEEECTTCTTEEEEECS-----SSCEEEEEEE
T ss_pred CCCccEEEecCCCCCEEEEEeC-----CCCeEEEEEE
Confidence 23356788998 7898887732 2366788875
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3.8e-05 Score=92.51 Aligned_cols=265 Identities=10% Similarity=0.068 Sum_probs=151.6
Q ss_pred CEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEecCCcEEEe
Q 000177 1511 LLTCITFLGDSSHIAVGS---------HTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSSSSQDVHLW 1579 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS---------~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSSsDgtVkLW 1579 (1922)
.+....|||||++|+... ..+.+.|||+.++...... ......+... .|||||+.|+-..++.|.+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~--~wSPDG~~iafv~~~nl~~~ 139 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYA--GWGPKGQQLIFIFENNIYYC 139 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBC--CBCSSTTCEEEEETTEEEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcccccee--eeccCCceEEEEecceEEEE
Confidence 466778999999988764 4678899999988754332 2233444455 89999999999888899998
Q ss_pred ccCCCCCCcceEec---------c-------------ceeEEEcCCCCEEEEeecCCC----------------------
Q 000177 1580 NASSIAGGPMHSFE---------G-------------CKAARFSNSGNLFAALPTETS---------------------- 1615 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~---------g-------------h~sVaFSPDG~~LaSgS~~S~---------------------- 1615 (1922)
+... +..++... | ...+-|||||++|+....+..
T Consensus 140 ~~~~--~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~ 217 (465)
T d1xfda1 140 AHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (465)
T ss_dssp SSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred ecCC--CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence 8865 33332211 1 135679999999998632210
Q ss_pred ---------CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc---------EEEEcCCCcceeee
Q 000177 1616 ---------DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---------ILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1616 ---------DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---------rLWDlrtgk~I~kf 1677 (1922)
...+.++|+.++.......++. ......+-...+.|+|++++++... .++|..+|++...+
T Consensus 218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~-~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~ 296 (465)
T d1xfda1 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPD-DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (465)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCC-CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred ccccCCCCCceeEEEEecCCCcEEEEEeccC-cCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence 0135566665543322211110 0001122234489999998777432 78899998765544
Q ss_pred ccC-CCce-----EEEEecCCCEEEE--Ee------EEEecC--------CCeEEEEEc-CCCc--eeEEEccCCCEEEE
Q 000177 1678 DQF-TDHG-----GGGFHPAGNEVII--NS------EVWDLR--------KFRLLRSVP-SLDQ--TTITFNARGDVIYA 1732 (1922)
Q Consensus 1678 ~gh-~~~V-----sVaFSPdG~~LAS--GS------eIWDLr--------TgklL~tl~-gH~~--~sVaFSPdG~~LaS 1732 (1922)
... ..++ ...|+|+|+.++. .+ .+|.+. .++.++.+. |.-. .-+.|+.+++.|+-
T Consensus 297 ~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF 376 (465)
T d1xfda1 297 EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF 376 (465)
T ss_dssp EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred EEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEE
Confidence 322 2232 4689999985432 22 133321 122222222 1111 23578998888875
Q ss_pred EEccCchhhhhhhcccccccCCcceEEEEecCCCceee--eec--cCCceEEEEEcCCCceEEEEe
Q 000177 1733 ILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA--TIP--VDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1733 gs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia--Tid--vkr~I~dLa~SPdds~LAVVe 1794 (1922)
.... .+|....+..++........ +.+ .....+.+.+||++++++...
T Consensus 377 ~a~~--------------~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~ 428 (465)
T d1xfda1 377 LSTE--------------DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (465)
T ss_dssp EESS--------------SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEeC--------------CCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence 4321 12333444444432222111 111 234578999999999987664
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.25 E-value=0.00011 Score=85.23 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=122.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc--CCCCeeEEEeeecCCCcE--EEEe--cCCcEEEeccCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS--HQAPVTLVQSHLSGETQL--LLSS--SSQDVHLWNASS 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g--Hss~VtsLq~afSpDG~l--LaSS--sDgtVkLWDl~t 1583 (1922)
..+..++|++++++|++.+. +.+..|.+.....+..... .......+ .++++++. +++. ..++|..+.+..
T Consensus 40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v--~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRAN--DADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGG--CTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEE--EECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 45667999999999988765 5678887764332222211 12334455 67888873 4443 255666554432
Q ss_pred CC-----------CCcceEe-----c---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1584 IA-----------GGPMHSF-----E---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1584 ~~-----------gk~l~tf-----~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
.. +..-... . ..+++.|+|+|++++++. .....|.+|++.....+....... ....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d--~g~d~v~~~~~~~~g~~~~~~~~~--~~~~g 192 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD--LTANKLWTHRKLASGEVELVGSVD--APDPG 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCEEEEEEEE--CSSTT
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee--CCCCEEEEEEccCCCceeecccee--ecCCC
Confidence 10 0000000 0 126899999999888873 334578888765433222111000 01122
Q ss_pred CcceEEEEcCCCCeEeecc------EEEEcCCCcce--ee---ecc--------------CCCce-EEEEecCCCEEEEE
Q 000177 1645 HAYSQIHFSPSDTMLLWNG------ILWDRRNSVPV--HR---FDQ--------------FTDHG-GGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I--~k---f~g--------------h~~~V-sVaFSPdG~~LASG 1698 (1922)
.....++|+|+++++.... .+|++..++.. .. +.. ..... .+.++|+|++|+++
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 2333399999999876444 67888765422 11 110 00112 68999999999887
Q ss_pred eE---------E--EecCC-CeEEE--EE---c--CCCceeEEEcc-CCCEEEEEE
Q 000177 1699 SE---------V--WDLRK-FRLLR--SV---P--SLDQTTITFNA-RGDVIYAIL 1734 (1922)
Q Consensus 1699 Se---------I--WDLrT-gklL~--tl---~--gH~~~sVaFSP-dG~~LaSgs 1734 (1922)
.+ | |++.. +.+.. .+ . +...+.++|+| +|++|+++.
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~ 328 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe
Confidence 63 3 34332 22111 11 1 12226899998 899999883
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.01 E-value=0.001 Score=73.56 Aligned_cols=205 Identities=11% Similarity=0.191 Sum_probs=135.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccC------CCCeeEEEeeecC-CCcEEEEe--cCCcEEEecc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSH------QAPVTLVQSHLSG-ETQLLLSS--SSQDVHLWNA 1581 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH------ss~VtsLq~afSp-DG~lLaSS--sDgtVkLWDl 1581 (1922)
.-+.++++++|+++++-.....|++||.+ |+.+..+... ...-..+ .+.+ .+.++++. .++.|.+++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRV--AVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEE--EEETTTTEEEEEECGGGCEEEEECT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccc--cccccccccceeccCCccccccccc
Confidence 45789999999988888888999999964 7776666211 1122334 3333 34555553 3667888876
Q ss_pred CCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1582 SSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1582 ~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
. +.....+.. ...+++.++|+.+++. ...+.+.++|.. ++.+.++... ........+++.+++
T Consensus 101 ~---g~~~~~~~~~~~~~p~~~avd~~G~i~v~~---~~~~~~~~~~~~-g~~~~~~g~~-----~~~~~~~~i~~d~~g 168 (279)
T d1q7fa_ 101 Y---GQFVRKFGATILQHPRGVTVDNKGRIIVVE---CKVMRVIIFDQN-GNVLHKFGCS-----KHLEFPNGVVVNDKQ 168 (279)
T ss_dssp T---SCEEEEECTTTCSCEEEEEECTTSCEEEEE---TTTTEEEEECTT-SCEEEEEECT-----TTCSSEEEEEECSSS
T ss_pred c---ccceeecCCCcccccceeccccCCcEEEEe---eccceeeEeccC-Cceeeccccc-----ccccccceeeeccce
Confidence 4 455555532 3678899999988876 566778888864 5666655310 011222338899999
Q ss_pred CeEeecc-----EEEEcCCCcceeeecc--CCC-ceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC----c
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQ--FTD-HGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD----Q 1718 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~g--h~~-~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~----~ 1718 (1922)
+++++.. ++||. +++.+.+|.. ... +..+++.|+|+.+++.+ .+|+. +|+.+.++.... .
T Consensus 169 ~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p 246 (279)
T d1q7fa_ 169 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 246 (279)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred eEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCE
Confidence 9888766 66774 5677777742 222 34899999999877754 25664 588888775332 2
Q ss_pred eeEEEccCCCEEEE
Q 000177 1719 TTITFNARGDVIYA 1732 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaS 1732 (1922)
+.|++.|+|.++++
T Consensus 247 ~~vav~~dG~l~V~ 260 (279)
T d1q7fa_ 247 FDVALMDDGSVVLA 260 (279)
T ss_dssp EEEEEETTTEEEEE
T ss_pred eEEEEeCCCcEEEE
Confidence 79999999976554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.99 E-value=0.0014 Score=74.25 Aligned_cols=221 Identities=10% Similarity=0.095 Sum_probs=133.6
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec---CCc-
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS---SQD- 1575 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs---Dgt- 1575 (1922)
|+..+.... ..+..++|.++|++.++-...+.|..|+..+++....+.........| ++++||+++++.. ...
T Consensus 31 p~~~~~~~~-~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gl--a~~~dG~l~va~~~~~~~~~ 107 (319)
T d2dg1a1 31 PWLEISKKG-LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI--KIHKDGRLFVCYLGDFKSTG 107 (319)
T ss_dssp EEEEEESSC-CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEE--EECTTSCEEEEECTTSSSCC
T ss_pred CcEEeccCC-cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEE--EECCCCCEEEEecCCCccce
Confidence 444444433 456799999999988888899999999988777666665556677888 8899999988852 223
Q ss_pred -EEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCC---CCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1576 -VHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTET---SDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1576 -VkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S---~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+...+... ......... .+.+.+.++|+++++..... ..+.+..++...+.. ..+.. .-.
T Consensus 108 ~i~~~~~~~--~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~-------~~~ 177 (319)
T d2dg1a1 108 GIFAATENG--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQ-------NIS 177 (319)
T ss_dssp EEEEECTTS--CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEE-------EES
T ss_pred eEEEEcCCC--ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEee-------ccc
Confidence 34444433 322222221 36789999999777642111 123355555443322 22210 011
Q ss_pred cceEEEEcCCCCeE-eecc-----EEEEcCC-Ccceee--------eccCCCceEEEEecCCCEEEEEe---E--EEecC
Q 000177 1646 AYSQIHFSPSDTML-LWNG-----ILWDRRN-SVPVHR--------FDQFTDHGGGGFHPAGNEVIINS---E--VWDLR 1705 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lL-aSgg-----rLWDlrt-gk~I~k--------f~gh~~~VsVaFSPdG~~LASGS---e--IWDLr 1705 (1922)
..+-++|+|+++.| ++.. ..||+.. +..... +.+...+-.+++.++|+..++.. + +||.
T Consensus 178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p- 256 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK- 256 (319)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-
T ss_pred eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-
Confidence 12339999999855 4443 4455542 222211 11122223799999999766643 3 6674
Q ss_pred CCeEEEEEcCC------C--ceeEEEccCCCEEEEEE
Q 000177 1706 KFRLLRSVPSL------D--QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1706 TgklL~tl~gH------~--~~sVaFSPdG~~LaSgs 1734 (1922)
.++.+.++.-. . .++++|.|.+..++...
T Consensus 257 ~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 257 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 58888887521 1 26999999888877663
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.97 E-value=0.00031 Score=77.09 Aligned_cols=208 Identities=12% Similarity=0.100 Sum_probs=121.1
Q ss_pred CEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCC
Q 000177 1511 LLTCITFLGDSSHIAVG-SHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASG-S~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk 1587 (1922)
.-..++++++|++.++. +..+.|..++..+..... .+.+. .....| +++++++++++.. .+.+++++-.. ..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gv--av~~~g~i~v~d~~~~~i~~~~~~~--~~ 89 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGL--AVDGAGTVYVTDFNNRVVTLAAGSN--NQ 89 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCE--EECTTCCEEEEETTTEEEEECTTCS--CC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEE--EEcCCCCEEEeeeeeceeeeeeecc--ce
Confidence 45799999999966654 455777777664433222 22222 234677 7789999988865 55666666544 33
Q ss_pred cceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-
Q 000177 1588 PMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG- 1663 (1922)
Q Consensus 1588 ~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg- 1663 (1922)
.+..+ ...+.+++.++++++++- .....+..++........ +.. .. -.....++++|+|+++++..
T Consensus 90 ~~~~~~~~~~p~~iavd~~g~i~v~d---~~~~~~~~~~~~~~~~~~-~~~-----~~-~~~p~~i~~~~~g~~~v~~~~ 159 (260)
T d1rwia_ 90 TVLPFDGLNYPEGLAVDTQGAVYVAD---RGNNRVVKLAAGSKTQTV-LPF-----TG-LNDPDGVAVDNSGNVYVTDTD 159 (260)
T ss_dssp EECCCCSCCSEEEEEECTTCCEEEEE---GGGTEEEEECTTCSSCEE-CCC-----CS-CCSCCEEEECTTCCEEEEEGG
T ss_pred eeeeeeeeeecccccccccceeEeec---cccccccccccccceeee-eee-----cc-cCCcceeeecCCCCEeeeccc
Confidence 33222 234789999999887765 455667777765433222 110 00 11223489999999887654
Q ss_pred ----EEEEcCCCcce-eeeccCCCceEEEEecCCCEEEEEe---EEEecCC-CeEEEEEc--CCC-ceeEEEccCCCEEE
Q 000177 1664 ----ILWDRRNSVPV-HRFDQFTDHGGGGFHPAGNEVIINS---EVWDLRK-FRLLRSVP--SLD-QTTITFNARGDVIY 1731 (1922)
Q Consensus 1664 ----rLWDlrtgk~I-~kf~gh~~~VsVaFSPdG~~LASGS---eIWDLrT-gklL~tl~--gH~-~~sVaFSPdG~~La 1731 (1922)
..||....... ..+.....+..+++.++|+.+++.. +|..+.. +.....+. +.. ...|+++++|.+++
T Consensus 160 ~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~v 239 (260)
T d1rwia_ 160 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 239 (260)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEE
T ss_pred cccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEE
Confidence 55565433222 1223334445899999999877765 3443332 22222222 112 27899999998666
Q ss_pred EE
Q 000177 1732 AI 1733 (1922)
Q Consensus 1732 Sg 1733 (1922)
+-
T Consensus 240 ad 241 (260)
T d1rwia_ 240 AD 241 (260)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00028 Score=84.72 Aligned_cols=210 Identities=10% Similarity=0.028 Sum_probs=125.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccC---CCCeeEEEeeecCCCcEEEEec----------CCcEEEeccC
Q 000177 1516 TFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSH---QAPVTLVQSHLSGETQLLLSSS----------SQDVHLWNAS 1582 (1922)
Q Consensus 1516 aFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH---ss~VtsLq~afSpDG~lLaSSs----------DgtVkLWDl~ 1582 (1922)
.|.+++.++.. ..+|.|.+||+.+++....+..+ ...+... .||||+++|+... .+.+.+||+.
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRY--EISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEE--EECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCcccccccccee--EECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence 47777766543 56788999999888764444332 2345555 7899999887643 3568899998
Q ss_pred CCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-----------Ccc
Q 000177 1583 SIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-----------HAY 1647 (1922)
Q Consensus 1583 t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-----------h~~ 1647 (1922)
+.....+..... .....|||||+.|+.. .++.|.+.+..++..++...+........| ...
T Consensus 100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv----~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~ 175 (465)
T d1xfda1 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI----FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (465)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE----ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred CCceeeccCccCCccccceeeeccCCceEEEE----ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence 722222211111 2458899999999986 356788888887766554432110000000 112
Q ss_pred eEEEEcCCCCeEeecc---------------------------------------EEEEcCCCcceee-ec-----cCCC
Q 000177 1648 SQIHFSPSDTMLLWNG---------------------------------------ILWDRRNSVPVHR-FD-----QFTD 1682 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg---------------------------------------rLWDlrtgk~I~k-f~-----gh~~ 1682 (1922)
..+.|||||+.|+... .++|+.++..... .. ....
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 255 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence 3478999999998432 2444433321111 00 0111
Q ss_pred ce-EEEEecCCCEEEEEe---------EEEecCCCeEEEEEcCCC-------ceeEEEccCCCEEEE
Q 000177 1683 HG-GGGFHPAGNEVIINS---------EVWDLRKFRLLRSVPSLD-------QTTITFNARGDVIYA 1732 (1922)
Q Consensus 1683 ~V-sVaFSPdG~~LASGS---------eIWDLrTgklL~tl~gH~-------~~sVaFSPdG~~LaS 1732 (1922)
.+ .+.|+|++++++... .++|..++++...+.... .....|+|+|..++-
T Consensus 256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~f 322 (465)
T d1xfda1 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (465)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEE
Confidence 23 678999998776654 278888887655443221 135789999986543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.57 E-value=0.0018 Score=73.47 Aligned_cols=186 Identities=11% Similarity=0.150 Sum_probs=110.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCC----CCeeEEEeeecCCCcEEEEecC--------------
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQ----APVTLVQSHLSGETQLLLSSSS-------------- 1573 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHs----s~VtsLq~afSpDG~lLaSSsD-------------- 1573 (1922)
-..++|.++|+.|+++.....|..++.+.+.......... ...+.+ .+.++|.+.++...
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl--~~d~~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDC--AFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEE--EECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEE--EECCCCCEEEecCccCcccccccceecc
Confidence 5679999999988888888889999976543221111111 135778 78999999888421
Q ss_pred --CcEEEeccCCCCCCcceEe---ccceeEEEcCCCC----EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1574 --QDVHLWNASSIAGGPMHSF---EGCKAARFSNSGN----LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1574 --gtVkLWDl~t~~gk~l~tf---~gh~sVaFSPDG~----~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+.|..++.. ++..... ..-+.++|+|+++ +|+.+ ++..+.|..||+.....+..-.. ........
T Consensus 151 ~~G~v~~~~~d---g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~--d~~~~~i~~~d~~~~g~~~~~~~-~~~~~~~~ 224 (314)
T d1pjxa_ 151 KFGSIYCFTTD---GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVA--ETPTKKLWSYDIKGPAKIENKKV-WGHIPGTH 224 (314)
T ss_dssp SCEEEEEECTT---SCEEEEEEEESSEEEEEEEECTTSCEEEEEEE--ETTTTEEEEEEEEETTEEEEEEE-EEECCCCS
T ss_pred CCceEEEEeec---CceeEeeCCcceeeeeEECCCCCcceeEEEEE--eecccceEEeeccCccccceeeE-EEEccccc
Confidence 223333332 3322222 2236789999764 44443 26778899998764433221110 00000011
Q ss_pred Ccce-EEEEcCCCCeEeec---c--EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecC
Q 000177 1645 HAYS-QIHFSPSDTMLLWN---G--ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLR 1705 (1922)
Q Consensus 1645 h~~~-vVaFSPdG~lLaSg---g--rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLr 1705 (1922)
...+ -+++..+|+++++. + .+||...++.+..+....... +++|.|+++.|.+.. +||.++
T Consensus 225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~ 296 (314)
T d1pjxa_ 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 1122 28999999987764 2 677777777776666554444 899999987554432 466543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00044 Score=82.56 Aligned_cols=431 Identities=18% Similarity=0.196 Sum_probs=219.1
Q ss_pred HHHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhh-hHHHHhccccchhh
Q 000177 541 EKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRK-FAALFVDRGGMQKL 619 (1922)
Q Consensus 541 q~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkK-fA~eFV~~gGlq~L 619 (1922)
++..+..|.-|..+.+....+++.+++..++.+|.. .+..+...|.+.|+.|..|.. .-..|.+.||++.|
T Consensus 77 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~--------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 148 (529)
T d1jdha_ 77 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS--------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148 (529)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCC--------CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHH
Confidence 556777888888888888899999999998888742 233467788899999988765 44568899999999
Q ss_pred hccCCCcc--cccccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHH-hcCChHHhhhHhhHhhhhcchhHHHHHh
Q 000177 620 LAVPRNNQ--TFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLL-ECTQDQARKNAALFFAAAFVFRAIIDAF 696 (1922)
Q Consensus 620 L~vPR~s~--a~tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLL-ecshds~r~~A~mFF~~sf~Fr~il~~F 696 (1922)
+.+-..+- .-.....||+.|++.. ...|.+......+..+++ +| ...++.-++.++..+.........-..|
T Consensus 149 v~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~----ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~ 223 (529)
T d1jdha_ 149 VALLNKTNVKFLAITTDCLQILAYGN-QESKLIILASGGPQALVN----IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223 (529)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHH----HHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHccChHHHHHHHHHHHHHhhhh-hHHHHHHHhcccchHHHH----HHHhhhhHHHHHHHHHHHhhhhccccccchh
Confidence 88754431 1223444666666543 222333333333333333 44 3445567777766665555556666667
Q ss_pred hhcccHHHHHHHHhhhhccccccCCCccccCCccCcCCCCCChhhhchhhhHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 000177 697 DAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNK 776 (1922)
Q Consensus 697 D~~dGLrkL~N~i~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~e~~~~s~rQ~~~h~c~aLR~Yf~aHL~~~v~~~~~~~ 776 (1922)
=..+|+..|+.++.. . + ..+..++|.+|+.. . +..+.
T Consensus 224 ~~~g~~~~L~~ll~~------------------------~-~--------~~~~~~a~~~l~~l-----s---~~~~~-- 260 (529)
T d1jdha_ 224 VEAGGMQALGLHLTD------------------------P-S--------QRLVQNCLWTLRNL-----S---DAATK-- 260 (529)
T ss_dssp HHTTHHHHHHTTTTS------------------------S-C--------HHHHHHHHHHHHHH-----H---TTCTT--
T ss_pred hhhhhhhhHHHHhcc------------------------c-c--------hhhhhhhhhHHHhc-----c---ccccc--
Confidence 667777776654420 0 0 12445666665531 1 10000
Q ss_pred CCCCCCCCCCCcCccc-ccccCCHHHHHHH-HHHhhcccccCcccccCcchHHHHHHhcCChHHHHhhhcCCCchhhHHH
Q 000177 777 SNRSAGRNIPNVRAAY-KPLDISNEAIDAV-FLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHD 854 (1922)
Q Consensus 777 ~~~s~~~~~~~~~~~~-k~~~~s~e~~~~~-~~~l~~~r~~~~~~~~~~W~pvd~f~~l~g~~~lL~l~~~~~~~r~~~e 854 (1922)
. .......+.. +-++-++..+... ...|. .+ ......-...+...+|+..|++++...... .+
T Consensus 261 --~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~---~l----~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~---~~ 325 (529)
T d1jdha_ 261 --Q---EGMEGLLGTLVQLLGSDDINVVTCAAGILS---NL----TCNNYKNKMMVCQVGGIEALVRTVLRAGDR---ED 325 (529)
T ss_dssp --C---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHH---HH----TTTCHHHHHHHHHTTHHHHHHHHHHHHTTC---HH
T ss_pred --h---hhhhhcchhhhhhcccccHHHHHHHHHHHH---hh----ccchhHHHHHHHHhhhHHHHHHHHHhhhcc---hh
Confidence 0 0000000000 0011112222211 11111 00 112334444666778888888777532211 34
Q ss_pred HHHHHhccceEEEeecchhhhhhhccccCCccchHHHHhhhhccCCCCCccchhHHHHHhhhcccCCCcCCCCCCccccC
Q 000177 855 LLQYALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPSISNKPPLLAQG 934 (1922)
Q Consensus 855 ~v~~aL~vL~i~tvvP~~r~~l~~~~~s~~~~Gi~ilL~~a~~g~~~~D~ev~~~AL~Vl~ncVc~P~~~~~~~~~~~~~ 934 (1922)
+...|+.+|.-++..+.......... ....|+..|+..-. ...+..++++++.+|.|+...|.. +... ..
T Consensus 326 ~~~~a~~aL~~l~~~~~~~~~~~~~i--~~~~~l~~L~~ll~---~~~~~~~~~~~~~~l~~l~~~~~~---~~~l-~~- 395 (529)
T d1jdha_ 326 ITEPAICALRHLTSRHQEAEMAQNAV--RLHYGLPVVVKLLH---PPSHWPLIKATVGLIRNLALCPAN---HAPL-RE- 395 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHH--HHTTCHHHHHHTTS---TTCCHHHHHHHHHHHHHHTTSGGG---HHHH-HH-
T ss_pred HHHHHHHHhhcccchhhcchhhhhhH--HhcccchhHHHHHh---ccchHHHHHHHHHHHhhcchhhhh---hhhh-hh-
Confidence 44556666554443332211111111 12346777776654 122456888999999999876642 1100 00
Q ss_pred ccccccccCCCCCCCcccccccccccccccccCcccccccccccccccccCCCcccccccCCCCCCCCCCCCCccccccc
Q 000177 935 QQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDRGSSANTQLACSTSQTPVPTPTSGLVGDRRI 1014 (1922)
Q Consensus 935 ~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1014 (1922)
.| +..... .+... .. ...++.... ..+....... . ....+
T Consensus 396 ---------~g---------~i~~L~---~lL~~-~~-~~~~~~~~~------------~~~~~~~~~~----~-~~~~~ 435 (529)
T d1jdha_ 396 ---------QG---------AIPRLV---QLLVR-AH-QDTQRRTSM------------GGTQQQFVEG----V-RMEEI 435 (529)
T ss_dssp ---------TT---------HHHHHH---HHHHH-HH-HHHC-----------------------CBTT----B-CHHHH
T ss_pred ---------cc---------cHHHHH---HHHhc-CC-HHHHHHHHh------------hhhhHHhhcc----c-chHHH
Confidence 00 000000 00000 00 000000000 0000000000 0 00000
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHhhccccCCCCchhhHHHHHHHHHHhCccccHHHHHHHHhhcch
Q 000177 1015 SLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVG 1094 (1922)
Q Consensus 1015 ~~~~~~~~~g~~~~~e~~~~~~~~~VR~nnGIkvLL~LL~~k~~~Pit~aD~iRaLAcraL~GLaR~~~vrqIlskLpl~ 1094 (1922)
.. ..+..+..-..+ ..-+..++..+||..|++||+.. - +-+|..|+.+|+.|++++..++++..-..-
T Consensus 436 ~~---~~~~al~~la~~--~~~r~~~~~~~~i~~Lv~lL~~~----~---~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~ 503 (529)
T d1jdha_ 436 VE---GCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSP----I---ENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503 (529)
T ss_dssp HH---HHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCS----C---HHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred HH---HHHHHHHHHccC--HHHHHHHHHCCCHHHHHHHhCCC----C---HHHHHHHHHHHHHHhcChhhHHHHHHCCCH
Confidence 00 000000000000 12246788999999999999832 1 358999999999999999999999888777
Q ss_pred HHHHHHHhcc
Q 000177 1095 KKLSELIRDS 1104 (1922)
Q Consensus 1095 ~~lq~Lmr~p 1104 (1922)
..|.+||..+
T Consensus 504 ~~L~~Ll~s~ 513 (529)
T d1jdha_ 504 APLTELLHSR 513 (529)
T ss_dssp HHHHHGGGCS
T ss_pred HHHHHHhCCC
Confidence 7788888654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.47 E-value=0.049 Score=61.16 Aligned_cols=210 Identities=8% Similarity=0.121 Sum_probs=124.3
Q ss_pred CeeEEEeeecCCCcEEEEec--------CCcEEEeccCCCCCCcceEec-------c-ceeEEEcCCCCEEEEeecCCCC
Q 000177 1553 PVTLVQSHLSGETQLLLSSS--------SQDVHLWNASSIAGGPMHSFE-------G-CKAARFSNSGNLFAALPTETSD 1616 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSs--------DgtVkLWDl~t~~gk~l~tf~-------g-h~sVaFSPDG~~LaSgS~~S~D 1616 (1922)
....+ +|.++|+++++.. +++|..||..+ +....... + -..+.|.++++.++++ ...
T Consensus 19 g~EGp--a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~--~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va---d~~ 91 (314)
T d1pjxa_ 19 GAEGP--VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA---DMR 91 (314)
T ss_dssp TCEEE--EECTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEE---ETT
T ss_pred CCeEe--EEeCCCCEEEEECccccccccCCEEEEEECCC--CcEEEEECCccccCCCcceeEEEeCCCCEEEEE---ECC
Confidence 34566 7899999888743 35688888876 33222111 1 2569999999877776 344
Q ss_pred CeEEEEECCCCceeeeeccccccccCCCC---cceEEEEcCCCCeEeecc------------------EEEEcC-CCcce
Q 000177 1617 RGILLYDIQTYQLEAKLSDTSVNLTGRGH---AYSQIHFSPSDTMLLWNG------------------ILWDRR-NSVPV 1674 (1922)
Q Consensus 1617 gtIrIWDlrTgk~i~tL~d~s~~~~~~gh---~~~vVaFSPdG~lLaSgg------------------rLWDlr-tgk~I 1674 (1922)
+.|..+|...+....... ...+. ..+.++|.|+|.+.++.. .+|-+. .++..
T Consensus 92 ~~i~~~~~~g~~~~~~~~------~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~ 165 (314)
T d1pjxa_ 92 LGLLVVQTDGTFEEIAKK------DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI 165 (314)
T ss_dssp TEEEEEETTSCEEECCSB------CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE
T ss_pred CeEEEEeCCCcEEEEEec------cccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCcee
Confidence 568888887544322111 00111 234489999999988753 455554 23333
Q ss_pred eeeccCCCceEEEEecCCC----EEEEEe----EEE--ecCC-CeE-----EEEEcCCCc---eeEEEccCCCEEEEEEc
Q 000177 1675 HRFDQFTDHGGGGFHPAGN----EVIINS----EVW--DLRK-FRL-----LRSVPSLDQ---TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1675 ~kf~gh~~~VsVaFSPdG~----~LASGS----eIW--DLrT-gkl-----L~tl~gH~~---~sVaFSPdG~~LaSgs~ 1735 (1922)
...........++|+|++. +|.++. +|| ++.. +.+ ...+.+... ..+++..+|++.++.+.
T Consensus 166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~ 245 (314)
T d1pjxa_ 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC
Confidence 3233333333788998875 444443 455 3332 222 122222221 47899999987766542
Q ss_pred cCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEEe
Q 000177 1736 RNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1736 ~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVVe 1794 (1922)
. ..+..++......+..+... .....++|.|+++.+-|..
T Consensus 246 ~-------------------g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~ 286 (314)
T d1pjxa_ 246 S-------------------SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp T-------------------TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred C-------------------CEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEE
Confidence 2 34556666555566666653 5678899999888777764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=0.0029 Score=69.13 Aligned_cols=180 Identities=9% Similarity=0.044 Sum_probs=114.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
..+.++++++|+++++....+.|++++-.++..+..+.+ ....+.| ++.++++++++. ....+..++... ...
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~i--avd~~g~i~v~d~~~~~~~~~~~~~---~~~ 131 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGL--AVDTQGAVYVADRGNNRVVKLAAGS---KTQ 131 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEE--EECTTCCEEEEEGGGTEEEEECTTC---SSC
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccc--cccccceeEeecccccccccccccc---cee
Confidence 356889999999888887777777776555544433332 3456788 788999988874 466677777654 222
Q ss_pred eE-----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-
Q 000177 1590 HS-----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG- 1663 (1922)
Q Consensus 1590 ~t-----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg- 1663 (1922)
.. +.....+++.++++.+++. ..++.|..||........ +... .......++++++|+++++..
T Consensus 132 ~~~~~~~~~~p~~i~~~~~g~~~v~~---~~~~~i~~~d~~~~~~~~-~~~~------~~~~p~gi~~d~~g~l~vsd~~ 201 (260)
T d1rwia_ 132 TVLPFTGLNDPDGVAVDNSGNVYVTD---TDNNRVVKLEAESNNQVV-LPFT------DITAPWGIAVDEAGTVYVTEHN 201 (260)
T ss_dssp EECCCCSCCSCCEEEECTTCCEEEEE---GGGTEEEEECTTTCCEEE-CCCS------SCCSEEEEEECTTCCEEEEETT
T ss_pred eeeeecccCCcceeeecCCCCEeeec---cccccccccccccceeee-eecc------ccCCCccceeeeeeeeeeeecC
Confidence 22 2234789999999988876 666889999987544332 2100 111123389999999988776
Q ss_pred --EEEEcCCC-cceeee--ccCCCceEEEEecCCCEEEEEe---EEEecCC
Q 000177 1664 --ILWDRRNS-VPVHRF--DQFTDHGGGGFHPAGNEVIINS---EVWDLRK 1706 (1922)
Q Consensus 1664 --rLWDlrtg-k~I~kf--~gh~~~VsVaFSPdG~~LASGS---eIWDLrT 1706 (1922)
+++.+... .....+ .+...+..++++++|+.+++.. +||-+.+
T Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 202 TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp TTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred CCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 55544432 222222 2333445899999998777644 4665443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.41 E-value=0.0033 Score=67.10 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=67.4
Q ss_pred EcCC--CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-c-C---C--cEEEeccCCCCCC
Q 000177 1517 FLGD--SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-S-S---Q--DVHLWNASSIAGG 1587 (1922)
Q Consensus 1517 FSPD--G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-s-D---g--tVkLWDl~t~~gk 1587 (1922)
.||| |+.|+-.+ +|.|.+.|+.+++. +.+..+...+... .|||||+.|+.. . + . .|.+++... +.
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p--~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~--g~ 79 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNA--RFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GE 79 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEE--EECTTSSEEEEEEEESTTCCEEEEEEEETTT--TE
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCE--EECCCCCEEEEEEeeCCCCCceEEEEEEecC--Cc
Confidence 5788 99887654 56788889987775 4566666777777 899999988863 1 2 2 356666654 33
Q ss_pred cceEec-----------cceeEEEcCCCCEEEEeecCC---CCCeEEEEECCCCce
Q 000177 1588 PMHSFE-----------GCKAARFSNSGNLFAALPTET---SDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1588 ~l~tf~-----------gh~sVaFSPDG~~LaSgS~~S---~DgtIrIWDlrTgk~ 1629 (1922)
. ..+. ......|+|+|+.|+...... ....+..++...+..
T Consensus 80 ~-~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 80 I-KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp E-EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred e-EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 2 2221 135688999999988763222 122345556555443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.39 E-value=0.01 Score=66.86 Aligned_cols=186 Identities=10% Similarity=0.053 Sum_probs=110.5
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCCceeeeccC--CCCeeEEEeeecCCCcEEEEecC----
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHT----KELKIFDSNSSSPLESCTSH--QAPVTLVQSHLSGETQLLLSSSS---- 1573 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~D----GtIkIWDl~tgk~l~tL~gH--ss~VtsLq~afSpDG~lLaSSsD---- 1573 (1922)
+.... .....++|++||+++++...+ +.|...+..++......... ....+.+ .+.++|++.++...
T Consensus 77 ~~~~~-~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~--~~d~~G~l~vtd~~~~~~ 153 (319)
T d2dg1a1 77 FVSHK-ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDM--VFDSKGGFYFTDFRGYST 153 (319)
T ss_dssp EECSS-SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEE--EECTTSCEEEEECCCBTT
T ss_pred EeCCC-CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcce--eEEeccceeecccccccc
Confidence 33444 668899999999988776433 33444454444443333211 2346677 78999998888432
Q ss_pred ---CcEEEeccCCCCCCcceEe----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCC
Q 000177 1574 ---QDVHLWNASSIAGGPMHSF----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 ---gtVkLWDl~t~~gk~l~tf----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh 1645 (1922)
+.+..++.. +..+..+ ...+.++|+|+++.|+.+ ++..+.|..||+... ....... ........+.
T Consensus 154 ~~~g~v~~~~~d---g~~~~~~~~~~~~pnGia~s~dg~~lyva--d~~~~~I~~~d~~~~g~~~~~~~-~~~~~~~~~~ 227 (319)
T d2dg1a1 154 NPLGGVYYVSPD---FRTVTPIIQNISVANGIALSTDEKVLWVT--ETTANRLHRIALEDDGVTIQPFG-ATIPYYFTGH 227 (319)
T ss_dssp BCCEEEEEECTT---SCCEEEEEEEESSEEEEEECTTSSEEEEE--EGGGTEEEEEEECTTSSSEEEEE-EEEEEECCSS
T ss_pred cCcceeEEEecc---cceeEEEeeccceeeeeeeccccceEEEe--cccCCceEEEEEcCCCceecccc-ceeeeccCCc
Confidence 234444443 2333322 224789999999877665 366789999998642 2211111 0000001122
Q ss_pred cceE-EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC------Cce-EEEEecCCCEEEEEe
Q 000177 1646 AYSQ-IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT------DHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1646 ~~~v-VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~------~~V-sVaFSPdG~~LASGS 1699 (1922)
..+. +++.++|++.++.. .+|| ..|+.+.++.... ..+ +++|.|++..+++.+
T Consensus 228 ~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 228 EGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred cceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 2333 99999999887643 6777 3688887775332 223 899999887766554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.36 E-value=0.0031 Score=70.34 Aligned_cols=185 Identities=8% Similarity=0.034 Sum_probs=111.8
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-eee--ccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-ESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-~tL--~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
...+..+. ..+.+++|++||++++++..++.+.+|+....... ..+ .......+.+ .+.++++++++. .++.+
T Consensus 60 ~~~~~~~~-~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i--~~~~~g~~~v~~~~~~~i 136 (302)
T d2p4oa1 60 QQIHATVE-GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI--TPLSDTQYLTADSYRGAI 136 (302)
T ss_dssp EEEEEECS-SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEE--EESSSSEEEEEETTTTEE
T ss_pred EEEEEcCC-CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCcccccee--EEccCCCEEeeccccccc
Confidence 34444555 78999999999999999999999988887554322 222 2345567888 889999998884 57788
Q ss_pred EEeccCCCCCCcce-Eecc-------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1577 HLWNASSIAGGPMH-SFEG-------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~-tf~g-------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
..+|... +.... .... .+.+.+. +..++.+ ++..+.|..+++........... ..
T Consensus 137 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~--~~~~~~i~~~~~~~~~~~~~~~~--~~--- 205 (302)
T d2p4oa1 137 WLIDVVQ--PSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVS--NTEKMLLLRIPVDSTDKPGEPEI--FV--- 205 (302)
T ss_dssp EEEETTT--TEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEE--ETTTTEEEEEEBCTTSCBCCCEE--EE---
T ss_pred eeeeccC--CcceeEecCCccceeeccCccccccccccc--CCceeee--cCCCCeEEecccccccccccccc--cc---
Confidence 8887765 22111 1110 1344444 4444444 26678888888775443222110 00
Q ss_pred CCCcceEEEEcCCCCeEeecc---EEEEcCC-Ccc--eeeec-cCCCceEEEE---ecCCCEEEEEe
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG---ILWDRRN-SVP--VHRFD-QFTDHGGGGF---HPAGNEVIINS 1699 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg---rLWDlrt-gk~--I~kf~-gh~~~VsVaF---SPdG~~LASGS 1699 (1922)
.......++|+++|+++++.. +||-+.. ++. +.... +.....+++| +||++.|.+++
T Consensus 206 ~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 206 EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 112222399999999888653 5666553 332 22222 2223348999 67888776554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.22 E-value=0.011 Score=64.84 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=112.3
Q ss_pred ceeeEEecC-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1498 FRPWRTCRD-DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1498 frpirtLrg-H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
...+.++.. +. .....+++.++|.++++....+.+.+++. +++.+.++ ..+......+ ++.+++.++++. ..
T Consensus 102 g~~~~~~~~~~~-~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i--~~d~~g~i~v~d~~~ 177 (279)
T d1q7fa_ 102 GQFVRKFGATIL-QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV--VVNDKQEIFISDNRA 177 (279)
T ss_dssp SCEEEEECTTTC-SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE--EECSSSEEEEEEGGG
T ss_pred ccceeecCCCcc-cccceeccccCCcEEEEeeccceeeEecc-CCceeeccccccccccccee--eeccceeEEeeeccc
Confidence 344444433 34 56789999999999888888888989886 46666666 4456677788 788899888885 47
Q ss_pred CcEEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
+.|++||.. ++.+.++.. ...+++.++|+.+++- ...++.|.+|+. +|+.+.++... ......
T Consensus 178 ~~V~~~d~~---G~~~~~~g~~g~~~~P~giavD~~G~i~Vad--~~~~~~v~~f~~-~G~~~~~~~~~-----~~~~~p 246 (279)
T d1q7fa_ 178 HCVKVFNYE---GQYLRQIGGEGITNYPIGVGINSNGEILIAD--NHNNFNLTIFTQ-DGQLISALESK-----VKHAQC 246 (279)
T ss_dssp TEEEEEETT---CCEEEEESCTTTSCSEEEEEECTTCCEEEEE--CSSSCEEEEECT-TSCEEEEEEES-----SCCSCE
T ss_pred cceeeeecC---CceeeeecccccccCCcccccccCCeEEEEE--CCCCcEEEEECC-CCCEEEEEeCC-----CCCCCE
Confidence 899999975 566666632 2789999999987774 123467999984 57777766411 011223
Q ss_pred eEEEEcCCCCeEeecc----EEEEcCCCcc
Q 000177 1648 SQIHFSPSDTMLLWNG----ILWDRRNSVP 1673 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg----rLWDlrtgk~ 1673 (1922)
..+++.|+|.++++.. ++|...+..+
T Consensus 247 ~~vav~~dG~l~V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 247 FDVALMDDGSVVLASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred eEEEEeCCCcEEEEeCCCeEEEEEeeeecC
Confidence 3489999998887655 6776665443
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.08 E-value=0.037 Score=62.89 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=98.1
Q ss_pred HHHHHHHhhhch-hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchh
Q 000177 541 EKYCIQCLETLG-EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lG-EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~ 618 (1922)
|+..+.+|.-|. ...+.-..+++++++..++.+|.. .+..+.-.+++.|+.|..+ ..+...+.+.||++.
T Consensus 74 ~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~--------~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~ 145 (434)
T d1q1sc_ 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS--------PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDP 145 (434)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCChhhhhHhhhccchhhhhhcccc--------CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhH
Confidence 344555555542 223444467789999888888753 2223456788889888865 456677889999998
Q ss_pred hhccCCCcccc-cccceeeehhcchhhHHHHhhcCC-----hhhHHHHHHHHHHHHhcCChHHhhhHhhHhh-hhcchhH
Q 000177 619 LLAVPRNNQTF-FGLSSCLFTIGSLQGIMERVCALP-----TDVVHQLVELAIQLLECTQDQARKNAALFFA-AAFVFRA 691 (1922)
Q Consensus 619 LL~vPR~s~a~-tgvS~Clyylay~~~aMERvC~lp-----~~vl~~lV~yaLwLLecshds~r~~A~mFF~-~sf~Fr~ 691 (1922)
|+.+-.....- .... .+..+-..+-.+|... -.....++..-..+|.+.++..+.+|+..+. ++.....
T Consensus 146 l~~~l~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 221 (434)
T d1q1sc_ 146 LLALLAVPDLSTLACG----YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 221 (434)
T ss_dssp HHHHTCSSCGGGSCHH----HHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhcccccchHH----HHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhh
Confidence 88764332111 1100 1111222334444422 2345667777778889999998888877665 3455556
Q ss_pred HHHHhhhcccHHHHHHHHh
Q 000177 692 IIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 692 il~~FD~~dGLrkL~N~i~ 710 (1922)
....+...+++.+|+.++.
T Consensus 222 ~~~~~~~~~~~~~Lv~ll~ 240 (434)
T d1q1sc_ 222 RIEMVVKKGVVPQLVKLLG 240 (434)
T ss_dssp HHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHhhcccchhcccccc
Confidence 6677777888888887663
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.99 E-value=0.031 Score=62.30 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=73.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec--cC--CCCeeEEEeeecCCCcEEEEec-----CCcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT--SH--QAPVTLVQSHLSGETQLLLSSS-----SQDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~--gH--ss~VtsLq~afSpDG~lLaSSs-----DgtVkLWD 1580 (1922)
..+.++++.++|.++++ +.+ -|.++|..+++...... .. ...++.+ .+.++|++.++.. .+.-.+|.
T Consensus 59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~--~vd~~G~iw~~~~~~~~~~~~g~l~~ 134 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDG--RMHPSGALWIGTMGRKAETGAGSIYH 134 (295)
T ss_dssp SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEE--EECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceee--EECCCCCEEEEeccccccccceeEee
Confidence 56889999999877765 444 58899998887543322 11 2246777 7899999888742 23456676
Q ss_pred cCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1581 ASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
+.. ++....+.+ .+.+.|+++++.++.+ ++..+.|..|++.
T Consensus 135 ~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~--dt~~~~I~~~~~d 178 (295)
T d2ghsa1 135 VAK--GKVTKLFADISIPNSICFSPDGTTGYFV--DTKVNRLMRVPLD 178 (295)
T ss_dssp EET--TEEEEEEEEESSEEEEEECTTSCEEEEE--ETTTCEEEEEEBC
T ss_pred ecC--CcEEEEeeccCCcceeeecCCCceEEEe--ecccceeeEeeec
Confidence 655 443333332 3789999999877665 3667888888875
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.93 E-value=0.085 Score=58.63 Aligned_cols=206 Identities=14% Similarity=0.085 Sum_probs=126.6
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE
Q 000177 1513 TCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1513 t~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t 1591 (1922)
-+..|++ ++.+..+--..+.|..||..+++.. .+. ....+.++ .+.++|.+++++.+ .+.++|..+ ++....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i--~~~~dg~l~va~~~-gl~~~d~~t--g~~~~l 93 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSAL--AKISDSKQLIASDD-GLFLRDTAT--GVLTLH 93 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEE--EEEETTEEEEEETT-EEEEEETTT--CCEEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEE--EEecCCCEEEEEeC-ccEEeeccc--ceeeEE
Confidence 3556776 4555566557789999999887643 332 24567888 77889999988765 588899887 443221
Q ss_pred ec--------cceeEEEcCCCCEEEEeecC-CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-e
Q 000177 1592 FE--------GCKAARFSNSGNLFAALPTE-TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-W 1661 (1922)
Q Consensus 1592 f~--------gh~sVaFSPDG~~LaSgS~~-S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-S 1661 (1922)
.. ..+.+.+.|+|++.++.... ...+.-.+|.+..++....+.. -...+-++|+++++.+. +
T Consensus 94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~--------~~~~Ng~~~s~d~~~l~~~ 165 (295)
T d2ghsa1 94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD--------ISIPNSICFSPDGTTGYFV 165 (295)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE--------ESSEEEEEECTTSCEEEEE
T ss_pred eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec--------cCCcceeeecCCCceEEEe
Confidence 11 13678899999977765221 1223456777777765444430 12234499999998654 4
Q ss_pred cc---EEE--EcC--CCcc---eee---eccCCCce-EEEEecCCCEEEEE---eE--EEecCCCeEEEEEcCC--Ccee
Q 000177 1662 NG---ILW--DRR--NSVP---VHR---FDQFTDHG-GGGFHPAGNEVIIN---SE--VWDLRKFRLLRSVPSL--DQTT 1720 (1922)
Q Consensus 1662 gg---rLW--Dlr--tgk~---I~k---f~gh~~~V-sVaFSPdG~~LASG---Se--IWDLrTgklL~tl~gH--~~~s 1720 (1922)
.+ +|| ++. .+.. ... +.+..... .+++..+|++.++. ++ .||. .++.+..+.-. ..++
T Consensus 166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~ 244 (295)
T d2ghsa1 166 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 244 (295)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred ecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEE
Confidence 33 554 332 1111 111 22223333 88999999876653 24 5664 58888887632 2379
Q ss_pred EEEc-cCCCEEEEEE
Q 000177 1721 ITFN-ARGDVIYAIL 1734 (1922)
Q Consensus 1721 VaFS-PdG~~LaSgs 1734 (1922)
++|- |+.+.||..+
T Consensus 245 ~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 245 PAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEESTTSCEEEEEE
T ss_pred EEEeCCCCCEEEEEE
Confidence 9995 7888887653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.93 E-value=0.032 Score=59.18 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=62.5
Q ss_pred eecCC--CcEEEEecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecC-CCC--CeEEEEECCCCcee
Q 000177 1560 HLSGE--TQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTE-TSD--RGILLYDIQTYQLE 1630 (1922)
Q Consensus 1560 afSpD--G~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~-S~D--gtIrIWDlrTgk~i 1630 (1922)
..+|| |+.|+..+++.|.+.|+.. ++. ..+.. .....|||||++|+..... +.+ ..|.+++..+++..
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~--g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKS--GST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTT--CCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCC--CCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 45788 9998887778888889986 443 33322 3678999999999876332 222 34778888877765
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
....... .............|+|+|+.|+..
T Consensus 82 ~lt~~~~-~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 82 RITYFSG-KSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp ECCCCCE-EEETTEECSEEEEECTTCCEEEEE
T ss_pred EeeecCC-CccCccccccccccCCCCCEEEEE
Confidence 4322100 000011223448999999988843
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.51 E-value=1.8 Score=47.80 Aligned_cols=114 Identities=12% Similarity=0.146 Sum_probs=71.8
Q ss_pred EEEEcCCCCEEEEEeCCC-----------cEEEEECCCCCceee--e-ccCCCCeeEEEeeecCCCcEEEEec--CCcEE
Q 000177 1514 CITFLGDSSHIAVGSHTK-----------ELKIFDSNSSSPLES--C-TSHQAPVTLVQSHLSGETQLLLSSS--SQDVH 1577 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DG-----------tIkIWDl~tgk~l~t--L-~gHss~VtsLq~afSpDG~lLaSSs--DgtVk 1577 (1922)
......+|++++.|+.+. .+.+||..+++.... . ..|....... .+.+++++++.|. ..++.
T Consensus 24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~--~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI--SMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE--EECTTSCEEEECSSSTTCEE
T ss_pred EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEE--EEecCCcEEEeecCCCccee
Confidence 344556888888888531 377999988765432 2 3343333444 5788999999964 46899
Q ss_pred EeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCC---CCCeEEEEECCCCce
Q 000177 1578 LWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTET---SDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S---~DgtIrIWDlrTgk~ 1629 (1922)
+||..+........+. ....++..+||+.++.++... .-..+.+||..+.+-
T Consensus 102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence 9999862111111111 124577788999998884321 124689999988654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.69 E-value=0.54 Score=55.20 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=85.3
Q ss_pred EEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEeccCCCCCCcceEec--cceeEE
Q 000177 1524 IAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWNASSIAGGPMHSFE--GCKAAR 1599 (1922)
Q Consensus 1524 LASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWDl~t~~gk~l~tf~--gh~sVa 1599 (1922)
+.||+..|.|+|+-+.+++.+..+...+..-.. -|-++...+.+++ +. ..+-.+...+ +..+.++- -|..+.
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~-G~G~~~es~~il~~~~~~~t~~~l~~~---g~~~~~~GD~HHP~~S 91 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSAT-GWGQTNESVRIHERTMSERTKKFLAAN---GKRIHDNGDLHHVHMS 91 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTT-CTTTBHHHHHHHHTTCC-----------------CCCCCBCCEEEE
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCc-ccCcchhHHHHhhcccChhhhhhhhcc---CcccccCCCcCCCccc
Confidence 568999999999999999888766421100000 0000100001111 00 0000000000 11111111 134556
Q ss_pred EcC---CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE--cCCCCeEeecc-----------
Q 000177 1600 FSN---SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF--SPSDTMLLWNG----------- 1663 (1922)
Q Consensus 1600 FSP---DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF--SPdG~lLaSgg----------- 1663 (1922)
|.. ||++++.. +..+.+|-+.|+.+.++.+.+.-|+... .|. +.. .|.-.|++..+
T Consensus 92 ~TdGtyDGrylFVN--Dkan~RVAvIdl~~fkt~kIi~iPn~~~---~HG---~r~~~~p~T~YV~~~~e~~vP~pndg~ 163 (459)
T d1fwxa2 92 FTEGKYDGRFLFMN--DKANTRVARVRCDVMKCDAILEIPNAKG---IHG---LRPQKWPRSNYVFCNGEDETPLVNDGT 163 (459)
T ss_dssp EETTEEEEEEEEEE--ETTTTEEEEEETTTTEEEEEEECSSCCS---EEE---EEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred ccCCccceeEEEEE--cCCCceEEEEECcceeeeEEEecCCCCC---Cce---eecccCCCeEEEEccCccccccCCCCc
Confidence 654 78888876 4678999999999999877554222111 111 222 23344554432
Q ss_pred ------------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1664 ------------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1664 ------------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
..+|..+.+......-..+.-.+.++|+|+++++.+
T Consensus 164 ~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 164 NMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp STTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred cccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence 357777776655554333333789999999998876
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.66 E-value=0.43 Score=53.09 Aligned_cols=215 Identities=11% Similarity=0.046 Sum_probs=112.2
Q ss_pred EEEEEcCCCCEEEEEeCC-CcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEec-------CCcEEEeccC
Q 000177 1513 TCITFLGDSSHIAVGSHT-KELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSSS-------SQDVHLWNAS 1582 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~D-GtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSSs-------DgtVkLWDl~ 1582 (1922)
..+++.++|++++.|+.+ .++.+||..+......- ...... ... +..+||++++.+. -..+.+||..
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~-~~~--~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~ 155 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSS--ATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 155 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEE--EECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccc-cce--eeecCCceeeeccccccccccceeeeecCC
Confidence 456788999999998766 58999998776543211 111111 223 4567899888852 1358899987
Q ss_pred CCCCCcceEec---------------c-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc--ccccCCC
Q 000177 1583 SIAGGPMHSFE---------------G-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS--VNLTGRG 1644 (1922)
Q Consensus 1583 t~~gk~l~tf~---------------g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s--~~~~~~g 1644 (1922)
+.....+.... . +..+...++|+.++.+ +....+.++|..+.........+. .......
T Consensus 156 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (387)
T d1k3ia3 156 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG---PSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM 232 (387)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECC---SSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEec---CcCCcEEecCcccCcEeeccccccCcccCcccc
Confidence 62111000000 0 1122234467777766 556677778877765433211000 0000000
Q ss_pred CcceEEEEcCCCCeEeecc-------------EEEEcCCCcc---eee-ecc---CCCceEEEEecCCCEEEEEe-----
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-------------ILWDRRNSVP---VHR-FDQ---FTDHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-------------rLWDlrtgk~---I~k-f~g---h~~~VsVaFSPdG~~LASGS----- 1699 (1922)
+...++.-..++++++.+| .++++..... ... ... .....+.+..+||+.+++|+
T Consensus 233 ~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~ 312 (387)
T d1k3ia3 233 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 312 (387)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred cccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCc
Confidence 1111122334666777665 2333322111 111 111 11112667779999999887
Q ss_pred -----------EEEecCCCeEEEEEcCCCc-----eeEEEccCCCEEEEEE
Q 000177 1700 -----------EVWDLRKFRLLRSVPSLDQ-----TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -----------eIWDLrTgklL~tl~gH~~-----~sVaFSPdG~~LaSgs 1734 (1922)
++||..+.+-. .+..... ....+.+||++++.+.
T Consensus 313 ~~~~~~~~~~ve~Ydp~~~~W~-~~~~~~~~R~~Hs~a~l~~dG~v~v~GG 362 (387)
T d1k3ia3 313 PFEDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGRVFNGGG 362 (387)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred cCCCCcEeceEEEEECCCCeEE-ECCCCCCcccceEEEEECCCCEEEEEeC
Confidence 37888766432 2221111 2345689999999885
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.42 E-value=11 Score=40.40 Aligned_cols=191 Identities=6% Similarity=-0.042 Sum_probs=103.6
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVG-SHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASG-S~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..+..++|....+.|+-. ..++.|+..+++.+.....+..-...+.+| ++..-+. +..+ ...+.|.+.++.. .
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~i--AvD~~~~~lY~~d~~~~~I~~~~~dg--~ 111 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI--ALDHLGRTIFWTDSQLDRIEVAKMDG--T 111 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE--EEETTTTEEEEEETTTTEEEEEETTS--C
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEE--EEeccCCeEEEeccCCCEEEEEecCC--c
Confidence 457789999877766655 456789888887665544444434567888 5544344 4444 3477899999875 2
Q ss_pred CcceEe----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc-eEEEEcCCCCeEe-
Q 000177 1587 GPMHSF----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY-SQIHFSPSDTMLL- 1660 (1922)
Q Consensus 1587 k~l~tf----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-~vVaFSPdG~lLa- 1660 (1922)
.....+ ...+.++++|...+++-...+.....|.-.++.......... .+-.. ..+++.+.++.|.
T Consensus 112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~--------~~~~~P~glaiD~~~~~lYw 183 (263)
T d1npea_ 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ--------DNLGLPNGLTFDAFSSQLCW 183 (263)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC--------TTCSCEEEEEEETTTTEEEE
T ss_pred eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee--------ecccccceEEEeecCcEEEE
Confidence 221111 223788999976665544222223334444555433322222 12222 2388988777664
Q ss_pred ecc---EEE--EcCCCcceeeeccCCCceEEEEecCCCEEEEEe----E--EEecCCCeEEEEEc
Q 000177 1661 WNG---ILW--DRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----E--VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1661 Sgg---rLW--Dlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----e--IWDLrTgklL~tl~ 1714 (1922)
+.. +|+ |+........+.+...+.++++. +.+|.... + ..|..+++.+.++.
T Consensus 184 ~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 184 VDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp EETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 332 444 43322222234444445566665 34443332 2 33555666665554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=91.22 E-value=17 Score=42.26 Aligned_cols=202 Identities=8% Similarity=0.037 Sum_probs=111.1
Q ss_pred eeecCceeeEEecC-CCCCCEEEEEEcC--CCCEEEEEeCCC------------------cEEEEECCCCCceeeeccCC
Q 000177 1493 FVYSRFRPWRTCRD-DAGALLTCITFLG--DSSHIAVGSHTK------------------ELKIFDSNSSSPLESCTSHQ 1551 (1922)
Q Consensus 1493 fi~srfrpirtLrg-H~d~~Vt~LaFSP--DG~lLASGS~DG------------------tIkIWDl~tgk~l~tL~gHs 1551 (1922)
.....|+..+++.- .. ..+..+...+ +-.+++.++.+. .+.++|..+.+....+.. .
T Consensus 115 Idl~~fkt~kIi~iPn~-~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~ 192 (459)
T d1fwxa2 115 VRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-S 192 (459)
T ss_dssp EETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-S
T ss_pred EECcceeeeEEEecCCC-CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-C
Confidence 34556666554432 22 4566666655 445787776633 356788887776655432 1
Q ss_pred CCeeEEEeeecCCCcEEEE-ecCC---------------cEEEec-----------------------cCCCCC-CcceE
Q 000177 1552 APVTLVQSHLSGETQLLLS-SSSQ---------------DVHLWN-----------------------ASSIAG-GPMHS 1591 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaS-SsDg---------------tVkLWD-----------------------l~t~~g-k~l~t 1591 (1922)
.....+ .++++|+++++ |.+. .+.+++ .....+ ..++.
T Consensus 193 g~ld~~--~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~y 270 (459)
T d1fwxa2 193 GNLDNC--DADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY 270 (459)
T ss_dssp SCCCCE--EECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEE
T ss_pred CChhcc--ccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEE
Confidence 234456 78999998887 4221 123333 322101 11111
Q ss_pred e---ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceee--eecccc--ccccCCCCcceEEEEcCCCCeEee---
Q 000177 1592 F---EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEA--KLSDTS--VNLTGRGHAYSQIHFSPSDTMLLW--- 1661 (1922)
Q Consensus 1592 f---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~--tL~d~s--~~~~~~gh~~~vVaFSPdG~lLaS--- 1661 (1922)
+ +..+.+.++|||++++++ +..+.++.|+|++.-..+. .+.... ..+...|-.---.+|+..|.-..|
T Consensus 271 IPVpKsPHGV~vSPDGKyi~Va--GKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfi 348 (459)
T d1fwxa2 271 IPIANNPHGCNMAPDKKHLCVA--GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL 348 (459)
T ss_dssp EEEESSCCCEEECTTSSEEEEE--CTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETT
T ss_pred EecCCCCCceEECCCCCEEEEe--CCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeec
Confidence 1 223679999999999887 3678999999997422110 000000 000111222222788888854333
Q ss_pred cc--EEEEcCCC----------cceeeeccCCCceEE------EEecCCCEEEEEeE
Q 000177 1662 NG--ILWDRRNS----------VPVHRFDQFTDHGGG------GFHPAGNEVIINSE 1700 (1922)
Q Consensus 1662 gg--rLWDlrtg----------k~I~kf~gh~~~VsV------aFSPdG~~LASGSe 1700 (1922)
.+ .-|++... ..+.+++-|-+.--+ ...|+|+||++..+
T Consensus 349 ds~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 349 DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence 23 78998532 345566665544322 34689999999873
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=87.60 E-value=19 Score=40.04 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=70.2
Q ss_pred cCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------------
Q 000177 1601 SNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---------------- 1663 (1922)
Q Consensus 1601 SPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---------------- 1663 (1922)
.++|+ +|++........+|-+|++.......+.... . ....-...+.+.+..+|.+++|..
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~-v-~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~ 184 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT-I-RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 184 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE-E-CCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTT
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEee-c-CCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhc
Confidence 34555 3444322235567888887644322111100 0 001123345588888888888742
Q ss_pred ----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----E--EEecCCCe---EEEEEcCCCc--eeEEEcc-CC
Q 000177 1664 ----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----E--VWDLRKFR---LLRSVPSLDQ--TTITFNA-RG 1727 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----e--IWDLrTgk---lL~tl~gH~~--~sVaFSP-dG 1727 (1922)
.+|....++......+......++++|++++|+.+. + +|++.... ....+. ... -.+.+.+ +|
T Consensus 185 ~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g 263 (340)
T d1v04a_ 185 LAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTG 263 (340)
T ss_dssp CCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTC
T ss_pred CCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCC
Confidence 455555444332334444445899999999988887 3 45665332 222222 222 4788876 56
Q ss_pred CEEEEEE
Q 000177 1728 DVIYAIL 1734 (1922)
Q Consensus 1728 ~~LaSgs 1734 (1922)
.+.+++.
T Consensus 264 ~lwva~~ 270 (340)
T d1v04a_ 264 DLWVGCH 270 (340)
T ss_dssp CEEEEEE
T ss_pred EEEEEEC
Confidence 6666653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.89 E-value=27 Score=39.49 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=63.7
Q ss_pred EEEEEEcCCCCEEEEEe-CC----CcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEe-cC-----------
Q 000177 1512 LTCITFLGDSSHIAVGS-HT----KELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSS-SS----------- 1573 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS-~D----GtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSS-sD----------- 1573 (1922)
+..+++|||+++|+.+- .. .+|+++|+.+++.+. .+.. .....+ .|++|++.|... .+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~--~W~~D~~~~~Y~~~~~~~~~~~~~~~ 202 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCM--AWTHDGKGMFYNAYPQQDGKSDGTET 202 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCE--EECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccce--EEcCCCCEEEEEEeccccCccccccc
Confidence 44567899999887432 23 479999999998764 2221 112345 788999877642 11
Q ss_pred -----CcEEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEE--EECC
Q 000177 1574 -----QDVHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILL--YDIQ 1625 (1922)
Q Consensus 1574 -----gtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrI--WDlr 1625 (1922)
..|.+|.+.+.....+..+.. ...+..++++++++.....+.+....+ .|+.
T Consensus 203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~ 267 (430)
T d1qfma1 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (430)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCC
Confidence 247777776622222233332 134567889988765433233444444 4544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.71 E-value=50 Score=39.03 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=41.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccC----CCCeeEEEeeecCCCcEEEEe------cCCcEEEeccCCCCCCcce
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSH----QAPVTLVQSHLSGETQLLLSS------SSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gH----ss~VtsLq~afSpDG~lLaSS------sDgtVkLWDl~t~~gk~l~ 1590 (1922)
+..|+.++.||.|.-.|..+|+.+..+.-. ...++.- -.--++.+++.+ ..+.|.-+|+.+ ++.+.
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~--p~v~~~~vivg~~~~~~~~~G~v~a~D~~T--G~~~W 190 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA--PFVAKDTVLMGCSGAELGVRGAVNAFDLKT--GELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC--CEEETTEEEEECBCGGGTCCCEEEEEETTT--CCEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeec--CeEeCCeEEEeeccccccccCcEEEEECCC--CcEEE
Confidence 346778888998888899999876554211 1111111 011155666553 267799999988 77766
Q ss_pred Ee
Q 000177 1591 SF 1592 (1922)
Q Consensus 1591 tf 1592 (1922)
++
T Consensus 191 ~~ 192 (571)
T d2ad6a1 191 RA 192 (571)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.14 E-value=1.7 Score=50.46 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=100.1
Q ss_pred HHHHHHHhhhchhHHHHHh-hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhh
Q 000177 541 EKYCIQCLETLGEYVEVLG-PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKL 619 (1922)
Q Consensus 541 q~~~l~~L~~lGEYqE~L~-~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~L 619 (1922)
-...|.+|+...+..|... .+...+++..++.+|.. . ....+...++..|..|..|.+....+++.|+++.|
T Consensus 330 a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~------~-~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L 402 (529)
T d1jdha_ 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP------P-SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST------T-CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHH
T ss_pred HHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhc------c-chHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHH
Confidence 3446777775555444332 34467888887777642 1 11235667888999999999999999999999988
Q ss_pred hccCCCccc-----ccccceeeehhc--chhhHHHHhh-------cCChh--hH--HHHHHHHHHHHhcCChHHhhhHhh
Q 000177 620 LAVPRNNQT-----FFGLSSCLFTIG--SLQGIMERVC-------ALPTD--VV--HQLVELAIQLLECTQDQARKNAAL 681 (1922)
Q Consensus 620 L~vPR~s~a-----~tgvS~Clyyla--y~~~aMERvC-------~lp~~--vl--~~lV~yaLwLLecshds~r~~A~m 681 (1922)
+++=..+.. +....+....+. ..++.+|..| .-|.. .+ .+.++.-..||..+|+..+..|+.
T Consensus 403 ~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~ 482 (529)
T d1jdha_ 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482 (529)
T ss_dssp HHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 876432210 001111111110 1122222221 11111 11 124555667889999999999999
Q ss_pred HhhhhcchhHHHHHhhhcccHHHHHHHHh
Q 000177 682 FFAAAFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 682 FF~~sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
++..-...+-.=+.|-..+|+..|.+++.
T Consensus 483 aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~ 511 (529)
T d1jdha_ 483 VLCELAQDKEAAEAIEAEGATAPLTELLH 511 (529)
T ss_dssp HHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHhcChhhHHHHHHCCCHHHHHHHhC
Confidence 98776666777888999999999999875
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.47 E-value=26 Score=38.97 Aligned_cols=137 Identities=10% Similarity=0.184 Sum_probs=91.5
Q ss_pred CCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
..+|.|.|+... ..+.+.--.--+.-.||..+.|+.- + ..++.|||+++.+.++.+. ....+---.|
T Consensus 44 ~~~VvIidl~n~-~~~~Rrpi~AdsAIMhP~~~IiALr---a-g~~LQiFnletK~klks~~--------~~e~VvfWkW 110 (327)
T d1utca2 44 QAQVVIIDMNDP-SNPIRRPISADSAIMNPASKVIALK---A-GKTLQIFNIEMKSKMKAHT--------MTDDVTFWKW 110 (327)
T ss_dssp EEEEEEEETTST-TSCEEEECCCSEEEECSSSSEEEEE---E-TTEEEEEETTTTEEEEEEE--------CSSCCCEEEE
T ss_pred CceEEEEECCCC-CcceecccchhhhhcCCCCcEEEEe---c-CCeEEEEehhHhhhhceEE--------cCCCcEEEEe
Confidence 447889999763 2344433344667789998888775 2 4689999999999888775 1122222566
Q ss_pred cCCCCeEe-ecc--EEEEcCC-CcceeeeccCCC-----ceEEEEecCCCEEEEEe------------EEEecCCCeEEE
Q 000177 1653 SPSDTMLL-WNG--ILWDRRN-SVPVHRFDQFTD-----HGGGGFHPAGNEVIINS------------EVWDLRKFRLLR 1711 (1922)
Q Consensus 1653 SPdG~lLa-Sgg--rLWDlrt-gk~I~kf~gh~~-----~VsVaFSPdG~~LASGS------------eIWDLrTgklL~ 1711 (1922)
-.+..+-+ |.. +-|++.. ..|++.|+.|.. .+.-..+++++|++..+ .+|... .+.-+
T Consensus 111 is~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ 189 (327)
T d1utca2 111 ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQ 189 (327)
T ss_dssp SSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEE
T ss_pred cCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCc
Confidence 66555544 333 8899853 358888887753 23677888999988777 277776 44556
Q ss_pred EEcCCCceeEEE
Q 000177 1712 SVPSLDQTTITF 1723 (1922)
Q Consensus 1712 tl~gH~~~sVaF 1723 (1922)
.+.||..+-..|
T Consensus 190 ~ieGhaa~F~~~ 201 (327)
T d1utca2 190 PIEGHAASFAQF 201 (327)
T ss_dssp EECCSEEEEEEE
T ss_pred cccceeeeeEEE
Confidence 777887755555
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=80.77 E-value=21 Score=41.23 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee--eec------cCCCCeeEEEeeecCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE--SCT------SHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~--tL~------gHss~VtsLq~afSpD 1564 (1922)
..-++++|.|||++|++--..|.|++++..+++... .+. .-......| +++|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgi--a~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGF--AFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEE--EECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeE--EeCCC
Confidence 467899999999988877668999999987765432 111 113456778 77774
|