Citrus Sinensis ID: 000459

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480----
MTVDKRLPLTTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRAGLKKAPAEKLDDDEEDEVPDLKQRLAKLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDSEDEIIIDDDEAFEIAAPEEGKKGGRKAAGNSKAAKPAAETKKRGPAKKQQPEASLGQRLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLGRAGTIEEPSGSSPSTSEEVAEVLPPKARPQRANRRQARYVLSDSESEKATDDSEFDEDEDED
ccccccccccccccccccccccccccccccHHHccccHHHHccccccEEccccccEEEEEEEcccccEEEEEcccccccEEEEEEEEEcHHHHHcccccccEEEEEEEccccEEEEEEccccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEccccEEEEEEEcccccEEEEEEEcccccccccEEEccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccccEEEEccEEEccccHHHHHHccccccEEEEEEcccEEEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcccccccccccEEEEEEEccccHHHHHHcccccccccEEEccccccccccccccHHHHHHcHHHHHHHHHHccccccccccccccccccEEEEEcccccccccHHHHHHHHHcHHHHccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEcccEEEEEcccEEEEEEcHHHHHHHHHHHcccccccccEEEcccccccHHHHHHHHHcccccEEEEEEccccHHHHHHHHHccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccEEEEEccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHccccHHHHcccccccccccccccccccEEcccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHccccccccccccccccEEEEEcccccccEEEEEEEEEEEEEccEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEEEcHHHHHHHHHHcHHHHHccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEccEEEEccccHHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccc
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEcccccEEEEEEEEcccHHHHHHHHHHHccccccccccccEEEEEEcccccEEEEEEccccccccEccccccEHHHHHHHcccEEcccccccccccccccccHHHHHHHcEEEEEEEEcccccccEEEEEEccccccccccEEccccccccEEEEEEcccHHHcccccHcHHHHHHHHHHHHHHHcccccccEEEEcccEEEcccHHHHHHHHcccccEEEEcccccEEEEEEEEccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHccEEEEEHHHHccccccccccccccccHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccEEEEEEccccHHHHHHHcHHcccccccccccccccEccHHHccHHHHHHHHHHHHHHHHHHcHcccccccccHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHccccHHHHHcccEEEEEccccEEEEEEccHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHccccccccccccEEcHHHHHHHHHHHHHccccccccccccccccccccEEEEHEHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccEEccccccccccccccccccHHHHHHccHHHHHHHccccccHHHHHccccccEEccEEEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccEEEEEEEEEEEcccEEEEEEccccHccHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEEEcHHHHHHHHHccccEEEEEEEEEEcccEEEEcccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHccccccccccHHHHHHHccccHHccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHccccccccHccccccHcccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHHHcccccEEEccccccccccccccccccccc
mtvdkrlplttsnnanvvgptapnktIEEMYQKKSQLEhillrpdtyigSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAadnkqrdpkmDAVKVVIDQEHdlisvhnsgdgvpveihqeegvyvpeLIFGHlltssnyddnvkkttggrngygakltnifSTEFIIETADGKRLKKYKQVFTnnmgkksepniskckegdnwtkvsfkpdlakfnmTHLEDDVVALMKKRVVDLAGCLGKsvkvelnghrvpvksFAEYVDMYPKSVTRFHERVNERWEICVTLsegqfqqvSFVNGiatikggtHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNAlidnpafdsqtkETLTLRqssfgskceLSEEFLKKVTAKSGIVETLLSWAnfkqskdlkkndgtktedvrgiskledanlaggrnseqCTLILTEGDSAKALAMAGLSVvgrdrfgvfplrgkllnvreassnqvlnnseigNIKKILGlkqgveynnvkslryghlmiMTDQVLLAPLSFLLWFILIFAWITTFCFMLaqdhdgshikGLLINFIHSFwpsllkipsFLVEFITPIVKatnkngkvlsfysmpdyeawkeslggnasswSIKYykglgtstskeGKEYFQNITlhkkdfvweddqdGEAIELAFSKKKIEARKKWLLqfepgnhldqkekyikYSDFVNKELILFSMADLqrsipsmvdglkpgqrkILFCSFKRNFIKEAKVAQFSGyvsehsayhhgeqSLASTILGMAQdfvgsnninllqpngqfgtrnqggkdaasARYIFTRlspitrflfpkddDKLLDYLNedgqqieptwympiiptvlvngsegigtgwssyipnynprdIVANVRRLLngemmepmhpwyrgfggtiektaskeagVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIrgfrqysddttvDFEVFLSEESMMRTKQEGLLKKFKLTTtistsnmhlfdskgvikkydtpeQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQkgftpfpknskSIEAVVAgatdeteeseenpevvngvqsidYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRkatpeslwvkdlDALDMQLDELDKSDARAEEERMKikgngngdagpkivakrapknarkndkksnNARATEAmgemdnvtkvvkpkgraglkkapaekldddeedeVPDLKQRLAKLNEQLAstklepspdqsgvmetekvqvpakkkepskrtaaQKKVVTvetsdsedeiiidddeafeiaapeegkkggrkaagnskaakpaaetkkrgpakkqqpeasLGQRLLTEmlkpaesspekkVRKMraspfnkksgsmlgragtieepsgsspstseevaevlppkarpqranrRQARyvlsdsesekatddsefdededed
mtvdkrlplttsnnanvvgptapnKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKttggrngygakltnifSTEFIietadgkrlKKYKQVFtnnmgkksepniskckegdnwTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGksvkvelnghrvpvksfaeyvDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLlswanfkqskdlkkndgtktedvrgiskledanlaggrnsEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLlnvreassnqvlnnseigniKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKatnkngkvlSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLqfepgnhldqkeKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWssyipnynpRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVtgiieevnettlrikelpirrWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTttistsnmhlfdskgviKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFilgvvngeivvnnrkrTDLLLELRQKgftpfpknsksiEAVVAGatdeteeseenpevvngVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDlrkatpeslwvkdldaLDMQLDELDKSDARAEEErmkikgngngdagpkivakrapknarkndkksnnarateamgemdnvtkvvkpkgraglkkapaekldddeedeVPDLKQRLAKLNEQLAstklepspdqsgvmetekvqvpakkkepskrtaaqkkvvtvetsdsedeiiidddeafeiaapeegkkggrkaagnskaakpaaetkkrgpakkqqpeaslgqrlltemlkpaesspekkvrkmraspfnkksgsmlgragtieepsgsspstseevaevlppkarpqranrrqaryvlsdsesekatddsefdededed
MTVDKRLPLTTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQvanhvmavvnkknknanvkahnvknhLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPkdddklldYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQlenlelellklenkVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDeteeseenpeVVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRAGLkkapaekldddeedevpdlkQRLAKLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDSedeiiidddeafeiaapeegkkggrkaagnskaakpaaETKKRGPAKKQQPEASLGQRLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLGRAgtieepsgsspstseeVAEVLppkarpqranrrqarYVLSDSESEKATddsefdededed
***********************************QLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAAD*******MDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFT****************GDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFD***************SKCELSEEFLKKVTAKSGIVETLLSWANF***********************************QCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQF*********AASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMM*TKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFT****************************VVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRD***************SLWVKDLD*********************************************************************************************************************************************************************************************************************************************************************************************************************
*********************************KSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWA**************************DANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESM**TKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPK********************************DYDYLLSMAIGTLTLEKVQG***********VDDLRKATPESLWVKDLDALDMQLDELD***********************************************************************************************************************************************************************************************************************************************************************************************************
MTVDKRLPLTTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVV****************VNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEERMKIKGNGNGDAGPKIVAK*****************ATEAMGEMDNVTKVVKPK**********************DLKQRLAKLNEQLASTK*******************************************EDEIIIDDDEAFEIAAPEE**********************************SLGQRLLTEMLK*************************LGRAGT**********************************************************
*************************TIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDS*TKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKN**TKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNS*****************************IDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEEE**************************************************************************************************************************************************************************************************************************************************************************************************
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MTVDKRLPLTTSNNANVVGPTAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKSVTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVNGVQSIDYDYLLSMAIGTLTLEKxxxxxxxxxxxxxxxxxxxxxTPESLWVKDxxxxxxxxxxxxxxxxxxxxxRMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATEAMGEMDNVTKVVKPKGRAGLKKAPAEKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxPSPDQSGVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDSEDEIIIDDDEAFEIAAPEEGKKGGRKAAGNSKAAKPAAETKKRGPAKKQQPEASLGQRLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLGRAGTIEEPSGSSPSTSEEVAEVLPPKARPQRANRRQARYVLSDSESEKATDDSEFDEDEDED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1484 2.2.26 [Sep-21-2011]
P301821473 DNA topoisomerase 2 OS=Ar yes no 0.950 0.957 0.640 0.0
O243081462 DNA topoisomerase 2 OS=Pi N/A no 0.942 0.956 0.611 0.0
P080961485 DNA topoisomerase 2 OS=Sc yes no 0.783 0.783 0.502 0.0
O42131 1627 DNA topoisomerase 2-beta yes no 0.762 0.695 0.519 0.0
Q64399 1612 DNA topoisomerase 2-beta N/A no 0.759 0.699 0.521 0.0
Q02880 1626 DNA topoisomerase 2-beta yes no 0.758 0.692 0.521 0.0
Q64511 1612 DNA topoisomerase 2-beta yes no 0.759 0.699 0.519 0.0
P415151526 DNA topoisomerase 2-alpha no no 0.906 0.881 0.463 0.0
Q013201528 DNA topoisomerase 2-alpha no no 0.939 0.912 0.443 0.0
P113881531 DNA topoisomerase 2-alpha no no 0.758 0.734 0.514 0.0
>sp|P30182|TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2 Back     alignment and function desciption
 Score = 1819 bits (4712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 967/1510 (64%), Positives = 1137/1510 (75%), Gaps = 99/1510 (6%)

Query: 6    RLPLTTSNNANVVGPTAPN------KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALW 59
            +LPL  SN ANV    A +      KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQ LW
Sbjct: 4    KLPLQNSNAANVAKAPAKSRAAAGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLW 63

Query: 60   IYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNS 119
            +YE++   M+ R ++YVPGLYKIFDEILVNAADNKQRD KMD+V+VVID E +LISV NS
Sbjct: 64   VYEKDE--MVQRPVTYVPGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNS 121

Query: 120  GDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET 179
            G GVPVEIHQEEG+YVPE+IFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET
Sbjct: 122  GAGVPVEIHQEEGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET 181

Query: 180  ADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMK 239
            ADGKRLKKYKQVF NNMGKKSEP I+KC + +NWTKV+FKPDL KFNMT LEDDVVALM 
Sbjct: 182  ADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPDLKKFNMTELEDDVVALMS 241

Query: 240  KRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKS---------VTRFHERVNERWE 290
            KRV D+AGCLGKSVKVELNG ++PVKSF +YVD+Y  +         + R  E+VN+RWE
Sbjct: 242  KRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRLTEKVNDRWE 301

Query: 291  ICVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNH 350
            +CV+LSEGQFQQVSFVN IATIKGGTHVDYV +Q+ NH++A VNKKNKNANVKAHNVKNH
Sbjct: 302  VCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVNKKNKNANVKAHNVKNH 361

Query: 351  LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFK 410
            LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSE+FLKKV  KSG+VE LLSWA+FK
Sbjct: 362  LWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKV-GKSGVVENLLSWADFK 420

Query: 411  QSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRD 470
            Q+KDLKK+DG KT  V  + KL+DA  AGG+NS  CTLILTEGDSAK+LA+AG SV+G +
Sbjct: 421  QNKDLKKSDGAKTGRVL-VEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNN 479

Query: 471  RFGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQ 530
              GVFPLRGKLLNVREAS+ Q+ NN EI N+KKILGLKQ ++Y NV SLRYG +MIMTDQ
Sbjct: 480  YCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQ 539

Query: 531  VLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEF 590
                                        DHDGSHIKGLLINFIHSFWPSLL++PSFLVEF
Sbjct: 540  ----------------------------DHDGSHIKGLLINFIHSFWPSLLQVPSFLVEF 571

Query: 591  ITPIVKATNKNGK-VLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQN 649
            ITPIVKAT K  K VLSFYSMP+YE WKESL GNA+ W IKYYKGLGTST++EGKEYF N
Sbjct: 572  ITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSN 631

Query: 650  ITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKE 709
            + LHKKDFVWED+QDGEAIELAFSKKKIEARK WL  + PGNHLDQ++  + YSDFVNKE
Sbjct: 632  LGLHKKDFVWEDEQDGEAIELAFSKKKIEARKNWLSSYVPGNHLDQRQPKVTYSDFVNKE 691

Query: 710  LILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQ 769
            LILFSMADLQRSIPSMVDGLKPGQRKILF +FK+   KE KVAQ  GYVS  SAYHHGEQ
Sbjct: 692  LILFSMADLQRSIPSMVDGLKPGQRKILFVAFKKIARKEMKVAQLVGYVSLLSAYHHGEQ 751

Query: 770  SLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDD 829
            SLAS I+GMAQD+VGSNNINLL PNGQFGTR  GGKD+ASARYIFT+LSP+TR LFPKDD
Sbjct: 752  SLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDD 811

Query: 830  DKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNG 889
            D LLDYLNEDGQ+IEPTWYMPIIPTVLVNG+EGIGTGWS++IPNYNPR+IVANVRRLLNG
Sbjct: 812  DLLLDYLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNG 871

Query: 890  EMMEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREF 949
            E M PM PWYRGF GTIEKTASKE G TYT+TG+ EEV+ETT+RI ELPIRRW  DY+ F
Sbjct: 872  ESMVPMDPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNF 931

Query: 950  LESI-IDQNDSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMH 1008
            L+S+  D    F +  + Y+D+ +VDF++ LSEE+M+  +QEG LKKFKLTTTI+TSNMH
Sbjct: 932  LQSLKTDNGAPFFQDVKAYNDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMH 991

Query: 1009 LFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNG 1068
            LFD KGVIKKY TPEQILEEFF +R E+YEKRK+  ++N+E+ELLKLENK RFIL V++G
Sbjct: 992  LFDKKGVIKKYVTPEQILEEFFDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSG 1051

Query: 1069 EIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDE--TEESEE---NPEVVNG- 1122
            EI+VN RK+ D++ +LRQKGFTPFP+ ++S+EA +AGA D+   EE EE   +PE  +  
Sbjct: 1052 EIIVNKRKKADIVEDLRQKGFTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSY 1111

Query: 1123 VQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLD 1182
            +   +YDYLL+MAI +LT+EKV+ LLADRDK+   V D++K TP+SLW+ DL++LD +L+
Sbjct: 1112 IPGSEYDYLLAMAIASLTIEKVEELLADRDKMIIAVADMKKTTPKSLWLSDLESLDKELE 1171

Query: 1183 ELDKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNARATE-------AM 1235
            +LD  DA+ ++     +      +G  +  KR         K +  A  +E       AM
Sbjct: 1172 KLDLKDAQVQQAIEAAQKKIRAKSGAAVKVKRQAPKKPAPKKTTKKASESETTEASYSAM 1231

Query: 1236 GEMDNVTKVVKPKGRAGLKKAPAEKLDDDEEDEVPDLKQRLAKLNEQLASTKLEPSPDQS 1295
               +NV +VVKPK R G KK  +E    +      D    +A++        ++P   Q 
Sbjct: 1232 DTDNNVAEVVKPKARQGAKKKASESETTEASHSAMDTDNNVAEV--------VKPKGRQG 1283

Query: 1296 G----------VMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDSEDEIIIDDDEAFEIA 1345
                       V E E + +  +  + +  +A      T ETS +      DDD   E+A
Sbjct: 1284 AKKKAPAAAKEVEEDEMLDLAQRLAQYNFGSAPADSSKTAETSKAIAVDDDDDDVVVEVA 1343

Query: 1346 APEEGKKGGRKAAGNSKAAKPAAETKKRGPAKKQQPEASLGQRLLTEMLKPAESSPEKKV 1405
              ++G        G   AA  AA+       + +Q  AS      TE+L     SPEKKV
Sbjct: 1344 PVKKG--------GRKPAATKAAKPPAAPRKRGKQTVAS------TEVLAIG-VSPEKKV 1388

Query: 1406 RKMRASPFNKKSGSMLGR-AGTIEEPSG---SSPSTSEEVAEVLPPKARPQRANRRQARY 1461
            RKMR+SPFNKKS S++ R A   EE S    +  S+SE+    +   +RPQRANRR+  Y
Sbjct: 1389 RKMRSSPFNKKSSSVMSRLADNKEEESSENVAGNSSSEKSGGDVSAISRPQRANRRKMTY 1448

Query: 1462 VLSDSESEKA 1471
            VLSDSESE A
Sbjct: 1449 VLSDSESESA 1458
Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3
>sp|O24308|TOP2_PEA DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 SV=1 Back     alignment and function description
>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=top2 PE=1 SV=2 Back     alignment and function description
>sp|O42131|TOP2B_CHICK DNA topoisomerase 2-beta OS=Gallus gallus GN=TOP2B PE=2 SV=1 Back     alignment and function description
>sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta OS=Cricetulus longicaudatus GN=TOP2B PE=2 SV=1 Back     alignment and function description
>sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 Back     alignment and function description
>sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta OS=Mus musculus GN=Top2b PE=1 SV=2 Back     alignment and function description
>sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1 Back     alignment and function description
>sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2 Back     alignment and function description
>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1484
2254500691489 PREDICTED: DNA topoisomerase 2-like [Vit 0.961 0.958 0.724 0.0
2240551291468 predicted protein [Populus trichocarpa] 0.954 0.965 0.718 0.0
2977362841452 unnamed protein product [Vitis vinifera] 0.938 0.958 0.708 0.0
2241061091482 predicted protein [Populus trichocarpa] 0.960 0.962 0.705 0.0
269841331482 DNA topoisomerase II [Nicotiana tabacum] 0.964 0.966 0.682 0.0
864388441467 putative DNA topoisomerase II [Malus x d 0.931 0.942 0.660 0.0
4494639981459 PREDICTED: DNA topoisomerase 2-like [Cuc 0.940 0.956 0.649 0.0
4495166991460 PREDICTED: LOW QUALITY PROTEIN: DNA topo 0.940 0.955 0.649 0.0
410529701525 putative DNA topoisomerase II [Oryza sat 0.966 0.940 0.627 0.0
3565553291484 PREDICTED: DNA topoisomerase 2-like [Gly 0.951 0.951 0.649 0.0
>gi|225450069|ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2114 bits (5478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1104/1524 (72%), Positives = 1263/1524 (82%), Gaps = 97/1524 (6%)

Query: 1    MTVDKRLPLTTSNNANVVGPTAP-NKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALW 59
            M VD +LPL +SNNAN+  P  P  KTIEE YQKKSQLEHILLRPDTYIGSIEKHTQALW
Sbjct: 1    MAVDNKLPLQSSNNANM--PAKPAGKTIEETYQKKSQLEHILLRPDTYIGSIEKHTQALW 58

Query: 60   IYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNS 119
            ++E  +  M+HR++SYVPGLYKIFDEILVNAADNKQRDP MD+VKVVID E + ISV+N+
Sbjct: 59   VFE--NNEMVHRSVSYVPGLYKIFDEILVNAADNKQRDPSMDSVKVVIDVEKNCISVYNN 116

Query: 120  GDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET 179
            GDGVPVEIHQEEGVYVPE+IFGHLLTSSNYDD+VKKTTGGRNGYGAKLTNIFSTEF+IET
Sbjct: 117  GDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDDVKKTTGGRNGYGAKLTNIFSTEFVIET 176

Query: 180  ADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMK 239
            ADG+R KKYKQVF+NNMGKKSEP I+KCKE +NWTKVSFKPDLAKFNMTHLEDDVVALMK
Sbjct: 177  ADGRRQKKYKQVFSNNMGKKSEPVITKCKERENWTKVSFKPDLAKFNMTHLEDDVVALMK 236

Query: 240  KRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMY--------PKSVTRFHERVNERWEI 291
            KRVVD+AGCLGK+VKVELNG R+PVKSF +YV++Y        P+S+ R  E+VNERWEI
Sbjct: 237  KRVVDIAGCLGKTVKVELNGQRIPVKSFNDYVNLYLQSAAKSRPESLPRIAEKVNERWEI 296

Query: 292  CVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHL 351
            CV+LSEGQFQQVSFVN IATIKGGTHVDYV NQ+AN VM++VNKKNKNAN+KAH VKNHL
Sbjct: 297  CVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANFVMSIVNKKNKNANIKAHTVKNHL 356

Query: 352  WVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQ 411
            WVFVNALIDNPAFDSQTKETLT+RQSSFGSKCELS+EFLKKV+ KSG+VE+LLSWA++KQ
Sbjct: 357  WVFVNALIDNPAFDSQTKETLTIRQSSFGSKCELSQEFLKKVS-KSGVVESLLSWADYKQ 415

Query: 412  SKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR 471
            +KDLKK DGTK + + GI+KLEDAN AGGRNSE+CTLILTEGDSAKALAMAG+SVVGR+ 
Sbjct: 416  NKDLKKTDGTKRQRLTGITKLEDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRNH 475

Query: 472  FGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQV 531
            +GVFPLRGKLLNVR+A   Q+L N+EI NIK+ILGL+QG EY+++KSLRYGHLMIMTDQ 
Sbjct: 476  YGVFPLRGKLLNVRDAQKKQILENAEIQNIKQILGLQQGKEYDSIKSLRYGHLMIMTDQ- 534

Query: 532  LLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFI 591
                                       DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFI
Sbjct: 535  ---------------------------DHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFI 567

Query: 592  TPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNIT 651
            TPIVKAT++NG+VLSFYSMP+YE+WKESLGGNAS WSIKYYKGLGTSTSKEGKEYF+++ 
Sbjct: 568  TPIVKATHRNGRVLSFYSMPEYESWKESLGGNASGWSIKYYKGLGTSTSKEGKEYFKDLG 627

Query: 652  LHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELI 711
             HKKDF+W D++DG+AIELAFSKKKIE RK WL QF+PG +LDQKEK IKYSDFVNKELI
Sbjct: 628  KHKKDFMWVDEKDGDAIELAFSKKKIEERKNWLRQFQPGTYLDQKEKLIKYSDFVNKELI 687

Query: 712  LFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSL 771
            LFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAK+AQFSGYVSEHSAYHHGEQSL
Sbjct: 688  LFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKIAQFSGYVSEHSAYHHGEQSL 747

Query: 772  ASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDK 831
            ASTI+GMAQDFVGSNNINLL PNGQFGTR+QGGKD ASARYI+TRLSPITRFLFPKDDD 
Sbjct: 748  ASTIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSPITRFLFPKDDDI 807

Query: 832  LLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEM 891
            LLDYLNEDGQ IEPTWY+P IP VLVNGSEGIGTGWSS IPNYNPRDI+ANVRRLLNGEM
Sbjct: 808  LLDYLNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGEM 867

Query: 892  MEPMHPWYRGFGGTIEKT-ASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFL 950
            MEPM PWYRGF GTIEKT  +K+  V YTV GIIEEVNETTLRI ELP+R+WTQDY+EFL
Sbjct: 868  MEPMDPWYRGFRGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDYKEFL 927

Query: 951  ESIIDQNDS----FIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSN 1006
            ESI+  ND     FI+ +++++DDTTV FEV +SEE+++  KQEGLL+KFKLTT ISTSN
Sbjct: 928  ESIMTGNDKIKDPFIKDYKEHNDDTTVHFEVIMSEENLLMAKQEGLLQKFKLTTKISTSN 987

Query: 1007 MHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVV 1066
            MHLFDS G IKKY+TPEQILEEFFH+RLEFYEKRK+V L+NLELELLKLENKVRFILGVV
Sbjct: 988  MHLFDSNGTIKKYETPEQILEEFFHLRLEFYEKRKRVLLDNLELELLKLENKVRFILGVV 1047

Query: 1067 NGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVN--GVQ 1124
             GEI+V+NRKR DL  EL QKGFTPFPK SKS+E  VAGATD+TEE+EEN + V+  GV+
Sbjct: 1048 RGEIIVSNRKRADLFHELHQKGFTPFPKKSKSVEIAVAGATDDTEEAEENTDAVSKGGVR 1107

Query: 1125 SIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDEL 1184
            + DY+YLLSMAIGTLTLEKVQ L ADRDKLN+ VDDL+KATP++LW+ DLDAL+ +LDE 
Sbjct: 1108 ATDYEYLLSMAIGTLTLEKVQELCADRDKLNKGVDDLKKATPKALWITDLDALERELDEQ 1167

Query: 1185 DKSDARAEEERMKIKGNGNGDAGPKIVAKRAPKNARKNDKKSNNAR---------ATEAM 1235
            DK+DARAEE R ++K     +AG K V+++APKN RKN+KK+NNA          A+ AM
Sbjct: 1168 DKNDARAEETRKQLKSRVMSEAGMK-VSRQAPKNPRKNNKKANNAEPAAETMDVSASSAM 1226

Query: 1236 GEMDNVTKVVKPKGRAGLKKAPAEK-------LDDDEEDEVPDLKQRLAKLNEQLASTKL 1288
             EM++V +VVKPKGRA  +KAPA+K       L D+++DEV +LK+RLA  N       L
Sbjct: 1227 -EMESVPEVVKPKGRAAPRKAPAKKKEMPTSVLKDEDDDEVHELKERLAAYN-------L 1278

Query: 1289 EPSPDQSGVMETEKVQVP-AKKKEPSKRTAAQKKVVTVETSDSEDEIIIDDDEAFEIAAP 1347
            E SPD S  ME E  QVP A+KKEPS+R AAQKK +   T  S+D+   +D E  E++A 
Sbjct: 1279 ESSPDGSAAMEAEVPQVPAARKKEPSRRAAAQKKPLASFTEISDDDEDDEDFEVEEVSAS 1338

Query: 1348 EEGKKGG----RKAAGNSKAAKPAAETKKRGPAKKQQPEASLGQRLLTEMLKPAES---S 1400
            +  KKGG      A   +     AA   KRG A KQQP+  LGQ LLTE+ KPAE+   S
Sbjct: 1339 DVKKKGGRKPAANAKAAAAKPAAAAAKNKRGAANKQQPQL-LGQTLLTEIFKPAETLGIS 1397

Query: 1401 PEKKVRKMRASPFNKKSGSMLGRAGTIEEPSGSSPST------------SEEVAEVLPPK 1448
            PEKKVRKMRASPFNKKSGS+LG  G  +E + +  ++            S EV  V+P +
Sbjct: 1398 PEKKVRKMRASPFNKKSGSVLGSTGEEDETAETEENSGSASTSNSSGGESNEV--VMPAR 1455

Query: 1449 ARPQRANRRQARYVLSDSESEKAT 1472
             RPQR NR Q RYV+SDSES++ T
Sbjct: 1456 TRPQRENRVQTRYVVSDSESDQPT 1479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica] Back     alignment and taxonomy information
>gi|449463998|ref|XP_004149716.1| PREDICTED: DNA topoisomerase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516699|ref|XP_004165384.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|356555329|ref|XP_003545986.1| PREDICTED: DNA topoisomerase 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1484
TAIR|locus:20762011473 TOPII "AT3G23890" [Arabidopsis 0.606 0.610 0.551 0.0
UNIPROTKB|Q0DYE1956 Os02g0699700 "DNA topoisomeras 0.351 0.546 0.697 0.0
POMBASE|SPBC1A4.03c1485 top2 "DNA topoisomerase II" [S 0.452 0.451 0.454 0.0
UNIPROTKB|Q7RJ691489 PY03394 "DNA topoisomerase 2" 0.458 0.456 0.459 2e-307
UNIPROTKB|A8JD081167 TOP2 "DNA topoisomerase 2" [Ch 0.419 0.532 0.543 7.4e-306
UNIPROTKB|P113881531 TOP2A "DNA topoisomerase 2-alp 0.787 0.762 0.481 1.6e-303
UNIPROTKB|Q64399 1612 TOP2B "DNA topoisomerase 2-bet 0.783 0.721 0.489 1.3e-301
UNIPROTKB|Q02880 1626 TOP2B "DNA topoisomerase 2-bet 0.780 0.712 0.490 8.8e-301
MGI|MGI:98791 1612 Top2b "topoisomerase (DNA) II 0.772 0.710 0.493 6.1e-300
UNIPROTKB|F1PRA7 1602 TOP2B "DNA topoisomerase 2" [C 0.780 0.723 0.489 7.8e-300
TAIR|locus:2076201 TOPII "AT3G23890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2449 (867.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 518/940 (55%), Positives = 627/940 (66%)

Query:   555 MLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKNGK-VLSFYSMPDY 613
             M  QDHDGSHIKGLLINFIHSFWPSLL++PSFLVEFITPIVKAT K  K VLSFYSMP+Y
Sbjct:   536 MTDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEY 595

Query:   614 EAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFS 673
             E WKESL GNA+ W IKYYKGLGTST++EGKEYF N+ LHKKDFVWED+QDGEAIELAFS
Sbjct:   596 EEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAIELAFS 655

Query:   674 KKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQ 733
             KKKIEARK WL  + PGNHLDQ++  + YSDFVNKELILFSMADLQRSIPSMVDGLKPGQ
Sbjct:   656 KKKIEARKNWLSSYVPGNHLDQRQPKVTYSDFVNKELILFSMADLQRSIPSMVDGLKPGQ 715

Query:   734 RKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQP 793
             RKILF +FK+   KE KVAQ  GYVS  SAYHHGEQSLAS I+GMAQD+VGSNNINLL P
Sbjct:   716 RKILFVAFKKIARKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMAQDYVGSNNINLLLP 775

Query:   794 NGQFGTRNQGGKDAASARYIFTRLSPITRFLFPXXXXXXXXYLNEDGQQIEPTWYMPIIP 853
             NGQFGTR  GGKD+ASARYIFT+LSP+TR LFP        YLNEDGQ+IEPTWYMPIIP
Sbjct:   776 NGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLLDYLNEDGQRIEPTWYMPIIP 835

Query:   854 TVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASKE 913
             TVLVNG+EGIGTGWS++IPNYNPR+IVANVRRLLNGE M PM PWYRGF GTIEKTASKE
Sbjct:   836 TVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWYRGFKGTIEKTASKE 895

Query:   914 AGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDS-FIRGFRQYSDDTT 972
              G TYT+TG+ EEV+ETT+RI ELPIRRW  DY+ FL+S+   N + F +  + Y+D+ +
Sbjct:   896 GGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKS 955

Query:   973 VDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHI 1032
             VDF++ LSEE+M+  +QEG LKKFKLTTTI+TSNMHLFD KGVIKKY TPEQILEEFF +
Sbjct:   956 VDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDL 1015

Query:  1033 RLEFYEKRKKVQXXXXXXXXXXXXXXVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPF 1092
             R E+YEKRK+                 RFIL V++GEI+VN RK+ D++ +LRQKGFTPF
Sbjct:  1016 RFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTPF 1075

Query:  1093 PKNSKSIEAVVAGATDXXXXXXXXXXVVNGVQSI------DYDYLLSMAIGTLTLEKVQG 1146
             P+ ++S+EA +AGA D          +V+   S       +YDYLL+MAI +LT+EKV+ 
Sbjct:  1076 PRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVEE 1135

Query:  1147 LLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARAEE--ERMKIKGNGNG 1204
             LLADRDK+   V D++K TP+SLW+ DL++LD +L++LD  DA+ ++  E  + K     
Sbjct:  1136 LLADRDKMIIAVADMKKTTPKSLWLSDLESLDKELEKLDLKDAQVQQAIEAAQKKIRAKS 1195

Query:  1205 DAGPKIVAKRAPKNA--RKNDKKSNNARATEAM-GEMD---NVTKVVKPKGRAGLXXXXX 1258
              A  K V ++APK    +K  KK++ +  TEA    MD   NV +VVKPK R G      
Sbjct:  1196 GAAVK-VKRQAPKKPAPKKTTKKASESETTEASYSAMDTDNNVAEVVKPKARQGAKKKAS 1254

Query:  1259 XXXXXXXXXXXXXXXQRLAKLNE---QLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKR 1315
                              +A++ +   +  + K  P+  +  V E E + +  +  + +  
Sbjct:  1255 ESETTEASHSAMDTDNNVAEVVKPKGRQGAKKKAPAAAKE-VEEDEMLDLAQRLAQYNFG 1313

Query:  1316 TAAQKKVVTVETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETKKRGP 1375
             +A      T ETS +                                        +KRG 
Sbjct:  1314 SAPADSSKTAETSKAIAVDDDDDDVVVEVAPVKKGGRKPAATKAAKPPAA----PRKRG- 1368

Query:  1376 AKKQQPEASLGQRLLTEMLKPAESSPEKKVRKMRASPFNKKSGSMLGRAXXXXXXXXXXX 1435
                +Q  AS      TE+L    S PEKKVRKMR+SPFNKKS S++ R            
Sbjct:  1369 ---KQTVAS------TEVLAIGVS-PEKKVRKMRSSPFNKKSSSVMSRLADNKEEESSEN 1418

Query:  1436 XXXXXVAEV----LXXXXXXXXXXXXXXXYVLSDSESEKA 1471
                   +E     +               YVLSDSESE A
Sbjct:  1419 VAGNSSSEKSGGDVSAISRPQRANRRKMTYVLSDSESESA 1458
GO:0000712 "resolution of meiotic recombination intermediates" evidence=IBA
GO:0000795 "synaptonemal complex" evidence=IBA
GO:0000819 "sister chromatid segregation" evidence=IBA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;ISS;IBA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005694 "chromosome" evidence=IEA
GO:0006200 "ATP catabolic process" evidence=IBA
GO:0006259 "DNA metabolic process" evidence=IEA;ISS
GO:0006261 "DNA-dependent DNA replication" evidence=IBA
GO:0006265 "DNA topological change" evidence=IEA;ISS;IBA
GO:0006312 "mitotic recombination" evidence=IBA
GO:0007059 "chromosome segregation" evidence=ISS
GO:0008094 "DNA-dependent ATPase activity" evidence=ISS;IBA
GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS;IBA
GO:0009507 "chloroplast" evidence=ISM
GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA
GO:0003916 "DNA topoisomerase activity" evidence=ISS
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006260 "DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009957 "epidermal cell fate specification" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
UNIPROTKB|Q0DYE1 Os02g0699700 "DNA topoisomerase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
POMBASE|SPBC1A4.03c top2 "DNA topoisomerase II" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q7RJ69 PY03394 "DNA topoisomerase 2" [Plasmodium yoelii yoelii (taxid:73239)] Back     alignment and assigned GO terms
UNIPROTKB|A8JD08 TOP2 "DNA topoisomerase 2" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|P11388 TOP2A "DNA topoisomerase 2-alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q64399 TOP2B "DNA topoisomerase 2-beta" [Cricetulus longicaudatus (taxid:10030)] Back     alignment and assigned GO terms
UNIPROTKB|Q02880 TOP2B "DNA topoisomerase 2-beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:98791 Top2b "topoisomerase (DNA) II beta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRA7 TOP2B "DNA topoisomerase 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q64511TOP2B_MOUSE5, ., 9, 9, ., 1, ., 30.51950.75940.6991yesno
O46374TOP2A_PIG5, ., 9, 9, ., 1, ., 30.51200.75940.7351yesno
Q02880TOP2B_HUMAN5, ., 9, 9, ., 1, ., 30.52160.75870.6924yesno
P30182TOP2_ARATH5, ., 9, 9, ., 1, ., 30.64030.95080.9579yesno
O42131TOP2B_CHICK5, ., 9, 9, ., 1, ., 30.51990.76280.6957yesno
O24308TOP2_PEA5, ., 9, 9, ., 1, ., 30.61110.94270.9569N/Ano
P41516TOP2A_RAT5, ., 9, 9, ., 1, ., 30.51200.75800.7372yesno
P08096TOP2_SCHPO5, ., 9, 9, ., 1, ., 30.50280.78360.7831yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.99.1.30.991
3rd Layer5.99.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1484
PLN032371465 PLN03237, PLN03237, DNA topoisomerase 2; Provision 0.0
PLN031281135 PLN03128, PLN03128, DNA topoisomerase 2; Provision 0.0
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 0.0
smart00433594 smart00433, TOP2c, TopoisomeraseII 0.0
smart00434444 smart00434, TOP4c, DNA Topoisomerase IV 1e-171
cd00187445 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; do 1e-149
COG0187635 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ 1e-144
pfam00521427 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase 1e-139
PHA02592439 PHA02592, 52, DNA topisomerase II medium subunit; 1e-76
cd03481153 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_Sc 2e-75
PHA02569602 PHA02569, 39, DNA topoisomerase II large subunit; 5e-75
COG0188804 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/ 5e-74
cd03365120 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisome 2e-72
cd01030115 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: 8e-54
PRK05559631 PRK05559, PRK05559, DNA topoisomerase IV subunit B 3e-52
TIGR01059654 TIGR01059, gyrB, DNA gyrase, B subunit 5e-46
TIGR01058637 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu 3e-37
pfam00204173 pfam00204, DNA_gyraseB, DNA gyrase B 2e-36
TIGR01055625 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu 2e-34
PRK05644638 PRK05644, gyrB, DNA gyrase subunit B; Validated 8e-27
PRK09631635 PRK09631, PRK09631, DNA topoisomerase IV subunit A 2e-21
PRK14939756 PRK14939, gyrB, DNA gyrase subunit B; Provisional 4e-21
TIGR01063800 TIGR01063, gyrA, DNA gyrase, A subunit 2e-18
cd03366114 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: 7e-17
TIGR01061738 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subu 2e-16
PRK09630479 PRK09630, PRK09630, DNA topoisomerase IV subunit A 4e-16
TIGR01062735 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subu 2e-14
PRK05561742 PRK05561, PRK05561, DNA topoisomerase IV subunit A 4e-13
PRK12758869 PRK12758, PRK12758, DNA topoisomerase IV subunit A 2e-10
PTZ00109903 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio 3e-10
PRK13979 957 PRK13979, PRK13979, DNA topoisomerase IV subunit A 4e-10
cd00329107 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer 5e-10
PRK05560805 PRK05560, PRK05560, DNA gyrase subunit A; Validate 1e-09
cd00822172 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DN 8e-06
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 3e-05
PRK05035695 PRK05035, PRK05035, electron transport complex pro 8e-05
pfam05466233 pfam05466, BASP1, Brain acid soluble protein 1 (BA 4e-04
pfam04615728 pfam04615, Utp14, Utp14 protein 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PRK07735 430 PRK07735, PRK07735, NADH dehydrogenase subunit C; 0.003
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional Back     alignment and domain information 
 Score = 2421 bits (6276), Expect = 0.0
 Identities = 1108/1516 (73%), Positives = 1247/1516 (82%), Gaps = 87/1516 (5%)

Query: 3    VDKRLPLTTSNNANVVGP---TAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALW 59
            + ++LPL  SN+ANV      ++  KTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQ LW
Sbjct: 1    MAEKLPLQESNSANVAAAPAASSGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLW 60

Query: 60   IYEEESKTMIHRTISYVPGLYKIFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNS 119
            +YE +   M+ R+++YVPGLYKIFDEILVNAADNKQRDPKMD+++VVID E +LISV+N+
Sbjct: 61   VYETDK--MVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNN 118

Query: 120  GDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIET 179
            GDGVPVEIHQEEGVYVPE+IFGHLLTSSNYDDN KKTTGGRNGYGAKLTNIFSTEF+IET
Sbjct: 119  GDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIET 178

Query: 180  ADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMK 239
            ADGKR KKYKQVF+NNMGKKSEP I+KCK+ +NWTKV+FKPDLAKFNMTHLEDDVVALMK
Sbjct: 179  ADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFKPDLAKFNMTHLEDDVVALMK 238

Query: 240  KRVVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMY--------PKSVTRFHERVNERWEI 291
            KRVVD+AGCLGK+VKVELNG R+PVKSF++YVD+Y        P+++ R +E+VN+RWE+
Sbjct: 239  KRVVDIAGCLGKTVKVELNGKRIPVKSFSDYVDLYLESANKSRPENLPRIYEKVNDRWEV 298

Query: 292  CVTLSEGQFQQVSFVNGIATIKGGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHL 351
            CV+LSEGQFQQVSFVN IATIKGGTHVDYV NQ+ANHVM  VNKKNKNAN+KAHNVKNHL
Sbjct: 299  CVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANHVMEAVNKKNKNANIKAHNVKNHL 358

Query: 352  WVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKVTAKSGIVETLLSWANFKQ 411
            WVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSE+FLKKV  KSGIVE LLSWA+FKQ
Sbjct: 359  WVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKV-MKSGIVENLLSWADFKQ 417

Query: 412  SKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDR 471
            SK+LKK DG KT  V GI KLEDAN AGG+NSE+CTLILTEGDSAKALA+AGLSVVGR+ 
Sbjct: 418  SKELKKTDGAKTTRVTGIPKLEDANEAGGKNSEKCTLILTEGDSAKALAVAGLSVVGRNY 477

Query: 472  FGVFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQV 531
            +GVFPLRGKLLNVREAS  Q++NN+EI NIK+ILGL+ G +Y +VKSLRYGHLMIMTDQ 
Sbjct: 478  YGVFPLRGKLLNVREASHKQIMNNAEIENIKQILGLQHGKQYESVKSLRYGHLMIMTDQ- 536

Query: 532  LLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFI 591
                                       DHDGSHIKGLLINFIHSFWPSLLK+PSFLVEFI
Sbjct: 537  ---------------------------DHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFI 569

Query: 592  TPIVKATNKNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNIT 651
            TPIVKAT +  KVLSFYSMP+YE WKESLGGNA+ WSIKYYKGLGTST+KEGKEYF+N+ 
Sbjct: 570  TPIVKATRRGKKVLSFYSMPEYEEWKESLGGNATGWSIKYYKGLGTSTAKEGKEYFKNLG 629

Query: 652  LHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELI 711
             HKKDFVWED+QDG+AIELAFSKKKIEARK WL Q+EPG HLDQ +K +KYSDFVNKELI
Sbjct: 630  KHKKDFVWEDEQDGDAIELAFSKKKIEARKNWLRQYEPGTHLDQTQKDVKYSDFVNKELI 689

Query: 712  LFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSL 771
            LFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNF+KEAKVAQ SGYVSEHSAYHHGEQSL
Sbjct: 690  LFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVAQLSGYVSEHSAYHHGEQSL 749

Query: 772  ASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDK 831
            ASTI+GMAQDFVGSNNINLL PNGQFGTR QGGKD ASARYIFTRLSPITRFLFPKDDD 
Sbjct: 750  ASTIIGMAQDFVGSNNINLLLPNGQFGTRLQGGKDHASARYIFTRLSPITRFLFPKDDDI 809

Query: 832  LLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEM 891
            LLDYLNEDGQ IEPTWYMPIIPTVLVNG+EGIGTGWS++IPNYNPRDIVAN+RRLLNGE 
Sbjct: 810  LLDYLNEDGQSIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPRDIVANIRRLLNGES 869

Query: 892  MEPMHPWYRGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLE 951
            MEPMHPWYRGF GTIEKTASKE G TYT+TG+ EEV+ETTLRI ELPIRRWT DY+EFLE
Sbjct: 870  MEPMHPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTLRITELPIRRWTDDYKEFLE 929

Query: 952  SIIDQN----DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNM 1007
            S+   N    D FI+  + Y+DDTTV FEV LSEE+M+  KQEGLLKKFKLTTTISTSNM
Sbjct: 930  SLKTDNNKNKDPFIKDVKAYNDDTTVHFEVILSEENMLAAKQEGLLKKFKLTTTISTSNM 989

Query: 1008 HLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVN 1067
            HLFDSKGVIKKYDTPEQILEEFFH+RLE+YEKRK+V L+NLE ELLKLENKVRFIL VV+
Sbjct: 990  HLFDSKGVIKKYDTPEQILEEFFHLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAVVD 1049

Query: 1068 GEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGATDETEESEENPEVVN--GVQS 1125
            GEI+VNNRK+ DL+ ELRQKGFTPFPK +KS+EA VAGATD+  E EE  +V +  GV+ 
Sbjct: 1050 GEIIVNNRKKADLVEELRQKGFTPFPKKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVRG 1109

Query: 1126 IDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELD 1185
             DYDYLLSMAIGTLTLEKVQ L ADRDKLN EV+DL+K TP+SLW+KDLDAL+ +LD+LD
Sbjct: 1110 SDYDYLLSMAIGTLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLD 1169

Query: 1186 KSDARAEEERMKIKGNG--NGDAGPKIVAKRAPKNA--RKNDKKSNNARATEA-----MG 1236
            K DA+AEE R K++           K V+++APK    +K  KK++ +  TE        
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAM 1229

Query: 1237 EMDNVTKVVKPKGRAG-LKKAPAEKLDDDEEDEVPDLKQRLAKLNEQLASTKLEPSPDQS 1295
            E +NV +VVKPKGRAG  KKAPA   + +EEDE+ DLK RLA  N       L+ +P QS
Sbjct: 1230 ETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYN-------LDSAPAQS 1282

Query: 1296 GVMETEKVQVPAKKKEPSKRTAAQKKVVTVETSDSEDEIIIDDDEAFEIA-APEEGKKGG 1354
              ME     VPA++    K+  A   V+    SDS+D+   DDD A E++ A    KKGG
Sbjct: 1283 AKMEETVKAVPARRAAARKKPLASVSVI----SDSDDD---DDDFAVEVSLAERLKKKGG 1335

Query: 1355 RK-AAGNSKAAKPAAETKKRGPAKKQQPEASLGQRLLTEMLKPAE---SSPEKKVRKMRA 1410
            RK AA N KAAKP A  KKRGPA  Q       Q+LLTEMLKPAE    SPEKKVRKMRA
Sbjct: 1336 RKPAAANKKAAKPPAAAKKRGPATVQSG-----QKLLTEMLKPAEAIGISPEKKVRKMRA 1390

Query: 1411 SPFNKKSGSMLGRAGTIEEPSGSS----PSTSEEVAEVLPPKARPQRANRRQARYVLSDS 1466
            SPFNKKSGS+LGRA T +E   S      S+SE+    +  K RPQRANR+Q  YVLSDS
Sbjct: 1391 SPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDS 1450

Query: 1467 ESEKATDDSEFDEDED 1482
            ESE A DDS+FD+DED
Sbjct: 1451 ESESA-DDSDFDDDED 1465

Length = 1465
>gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII Back     alignment and domain information
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV Back     alignment and domain information
>gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II Back     alignment and domain information
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A Back     alignment and domain information
>gnl|CDD|222896 PHA02592, 52, DNA topisomerase II medium subunit; Provisional Back     alignment and domain information
>gnl|CDD|239563 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA Back     alignment and domain information
>gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173785 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>gnl|CDD|173780 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit Back     alignment and domain information
>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>gnl|CDD|215785 pfam00204, DNA_gyraseB, DNA gyrase B Back     alignment and domain information
>gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated Back     alignment and domain information
>gnl|CDD|236598 PRK09631, PRK09631, DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|233256 TIGR01063, gyrA, DNA gyrase, A subunit Back     alignment and domain information
>gnl|CDD|173786 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit Back     alignment and domain information
>gnl|CDD|233255 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit, Gram-positive Back     alignment and domain information
>gnl|CDD|170022 PRK09630, PRK09630, DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>gnl|CDD|130134 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subunit, proteobacterial Back     alignment and domain information
>gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated Back     alignment and domain information
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional Back     alignment and domain information
>gnl|CDD|237576 PRK13979, PRK13979, DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>gnl|CDD|235502 PRK05560, PRK05560, DNA gyrase subunit A; Validated Back     alignment and domain information
>gnl|CDD|238419 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein) Back     alignment and domain information
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1484
PLN032371465 DNA topoisomerase 2; Provisional 100.0
PTZ001081388 DNA topoisomerase 2-like protein; Provisional 100.0
PLN031281135 DNA topoisomerase 2; Provisional 100.0
KOG0355842 consensus DNA topoisomerase type II [Chromatin str 100.0
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 100.0
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 100.0
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 100.0
PTZ00109903 DNA gyrase subunit b; Provisional 100.0
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 100.0
PRK05644638 gyrB DNA gyrase subunit B; Validated 100.0
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 100.0
PRK14939756 gyrB DNA gyrase subunit B; Provisional 100.0
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 100.0
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 100.0
PHA02592439 52 DNA topisomerase II medium subunit; Provisional 100.0
smart00434445 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisom 100.0
cd00187445 TOP4c DNA Topoisomerase, subtype IIA; domain A'; b 100.0
PF00521426 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subuni 100.0
PRK05561742 DNA topoisomerase IV subunit A; Validated 100.0
TIGR01061738 parC_Gpos DNA topoisomerase IV, A subunit, Gram-po 100.0
PRK05560805 DNA gyrase subunit A; Validated 100.0
TIGR01063800 gyrA DNA gyrase, A subunit. This model describes t 100.0
TIGR01062735 parC_Gneg DNA topoisomerase IV, A subunit, proteob 100.0
PRK13979 957 DNA topoisomerase IV subunit A; Provisional 100.0
COG0188804 GyrA Type IIA topoisomerase (DNA gyrase/topo II, t 100.0
PRK09631635 DNA topoisomerase IV subunit A; Provisional 100.0
PRK12758869 DNA topoisomerase IV subunit A; Provisional 100.0
PRK09630479 DNA topoisomerase IV subunit A; Provisional 100.0
cd03366114 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisome 100.0
cd01030115 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisome 100.0
cd03365120 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-prima 100.0
cd03481153 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: T 99.97
PF00204173 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA 99.95
cd00822172 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: 99.94
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.61
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 99.4
PF0098665 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl term 99.35
PRK04184535 DNA topoisomerase VI subunit B; Validated 99.35
PLN032371465 DNA topoisomerase 2; Provisional 99.33
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.27
PRK14867659 DNA topoisomerase VI subunit B; Provisional 99.05
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 98.95
PF01751100 Toprim: Toprim domain; InterPro: IPR006171 This is 98.71
PRK14868795 DNA topoisomerase VI subunit B; Provisional 98.48
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.39
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 98.21
cd00329107 TopoII_MutL_Trans MutL_Trans: transducer domain, h 97.85
KOG0355842 consensus DNA topoisomerase type II [Chromatin str 97.74
PRK05218613 heat shock protein 90; Provisional 97.71
PRK14083601 HSP90 family protein; Provisional 97.66
PRK14939756 gyrB DNA gyrase subunit B; Provisional 97.34
PTZ00272701 heat shock protein 83 kDa (Hsp83); Provisional 96.86
PTZ001081388 DNA topoisomerase 2-like protein; Provisional 96.86
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 96.85
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 96.8
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 96.48
PTZ00130814 heat shock protein 90; Provisional 96.34
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 96.25
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 96.2
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 96.03
PRK04069161 serine-protein kinase RsbW; Provisional 95.83
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 95.74
PRK10604433 sensor protein RstB; Provisional 95.61
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 95.46
COG3920221 Signal transduction histidine kinase [Signal trans 95.45
PRK03660146 anti-sigma F factor; Provisional 95.27
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 95.15
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 95.04
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 94.69
PRK11006430 phoR phosphate regulon sensor protein; Provisional 94.39
COG3850574 NarQ Signal transduction histidine kinase, nitrate 94.36
PRK11086542 sensory histidine kinase DcuS; Provisional 94.33
PRK10549466 signal transduction histidine-protein kinase BaeS; 93.74
PRK10364457 sensor protein ZraS; Provisional 93.7
KOG1978672 consensus DNA mismatch repair protein - MLH2/PMS1/ 93.63
PRK10337449 sensor protein QseC; Provisional 93.58
COG3290537 CitA Signal transduction histidine kinase regulati 93.46
PRK11100475 sensory histidine kinase CreC; Provisional 93.4
PRK09303380 adaptive-response sensory kinase; Validated 93.36
PRK09835482 sensor kinase CusS; Provisional 93.36
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 93.3
KOG1979694 consensus DNA mismatch repair protein - MLH1 famil 93.14
PRK10755356 sensor protein BasS/PmrB; Provisional 93.09
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 92.9
PRK09470461 cpxA two-component sensor protein; Provisional 92.55
COG4585365 Signal transduction histidine kinase [Signal trans 92.35
PRK09467435 envZ osmolarity sensor protein; Provisional 92.15
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 92.15
PRK11644495 sensory histidine kinase UhpB; Provisional 92.14
PRK10815485 sensor protein PhoQ; Provisional 91.8
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 91.76
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 91.69
PRK11360607 sensory histidine kinase AtoS; Provisional 91.27
PRK13837828 two-component VirA-like sensor kinase; Provisional 91.15
PRK15347921 two component system sensor kinase SsrA; Provision 90.98
PRK149001052 valS valyl-tRNA synthetase; Provisional 90.48
PRK10490895 sensor protein KdpD; Provisional 89.76
COG4191603 Signal transduction histidine kinase regulating C4 89.71
PRK13560807 hypothetical protein; Provisional 89.37
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 89.01
COG0642336 BaeS Signal transduction histidine kinase [Signal 88.53
PRK10547670 chemotaxis protein CheA; Provisional 88.24
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 87.77
PRK10618894 phosphotransfer intermediate protein in two-compon 87.23
COG3851497 UhpB Signal transduction histidine kinase, glucose 86.11
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 85.98
PRK10841924 hybrid sensory kinase in two-component regulatory 85.12
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 84.59
PRK11091779 aerobic respiration control sensor protein ArcB; P 83.77
PRK149001052 valS valyl-tRNA synthetase; Provisional 82.65
PRK13557540 histidine kinase; Provisional 82.44
PRK13559361 hypothetical protein; Provisional 81.23
KOG19771142 consensus DNA mismatch repair protein - MLH3 famil 81.23
PRK099591197 hybrid sensory histidine kinase in two-component r 80.83
cd0018883 TOPRIM Topoisomerase-primase domain. This is a nuc 80.15
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information 
Probab=100.00  E-value=0  Score=3448.55  Aligned_cols=1419  Identities=78%  Similarity=1.180  Sum_probs=1281.3

Q ss_pred             CCCCCCCCCCCCCCCC---CCCCCCcchhhcccCCchhhhcCCCceeecccccceeEEEEeccccceeeeecccccchHh
Q 000459            5 KRLPLTTSNNANVVGP---TAPNKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQALWIYEEESKTMIHRTISYVPGLYK   81 (1484)
Q Consensus         5 ~~~~~~~~~~~~~~~~---~~~~~~~~~~yq~L~~lEhVrkRP~mYIGS~~~~~~~~~V~e~~~~~m~~~~v~~vpGL~k   81 (1484)
                      .+.||++|+++|+++.   ..++++++++||+|+||||||+|||||||||+..++.||||+  .++|++++|+|+|||||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~--~~~m~~~~v~~vpGL~k   80 (1465)
T PLN03237          3 EKLPLQESNSANVAAAPAASSGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYE--TDKMVQRSVTYVPGLYK   80 (1465)
T ss_pred             cccccccCcccccccCcccccCCCcHHHhhhccccchHHhcCCCCEeCCCCcccceeeeec--cccceeeeccccchhhh
Confidence            5889999999998854   346799999999999999999999999999999999999995  47999999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCeEEEEEEccCCEEEEEECCcccccccccCCCcccceEEeeeccccccCCCCccccccCcc
Q 000459           82 IFDEILVNAADNKQRDPKMDAVKVVIDQEHDLISVHNSGDGVPVEIHQEEGVYVPELIFGHLLTSSNYDDNVKKTTGGRN  161 (1484)
Q Consensus        82 i~dEIL~Na~De~~~~~~~~~I~V~i~~d~gsIsV~DnGrGIPvd~h~~~~~~~~Elift~L~aGgkfdd~~yk~sGGlh  161 (1484)
                      ||||||+||+||++|+|+|+.|+|+||.++|+|||+||||||||++|+++|+|+||||||+||||||||+++|++|||||
T Consensus        81 ifdEIldNAvDe~~r~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlh  160 (1465)
T PLN03237         81 IFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRN  160 (1465)
T ss_pred             hHHHHhhhhHhHHhhcCCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeecccc
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             CcccceeeecccEEEEEEEecCCCeEEEEEEecCCCCCCCCccccCCCCCcceEEEEecCccccccCccCHHHHHHHHHH
Q 000459          162 GYGAKLTNIFSTEFIIETADGKRLKKYKQVFTNNMGKKSEPNISKCKEGDNWTKVSFKPDLAKFNMTHLEDDVVALMKKR  241 (1484)
Q Consensus       162 GvGasvvNAlS~~f~Vev~d~rdGk~y~q~f~~g~~~~~~~~i~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~ll~~R  241 (1484)
                      |||+|||||||+||+|+|+|+++|++|+|+|++||+++..|+++.+...++||+|+||||++||+++.|++|+++++.+|
T Consensus       161 GVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~PD~eiF~~~~fd~D~l~~~~rR  240 (1465)
T PLN03237        161 GYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFKPDLAKFNMTHLEDDVVALMKKR  240 (1465)
T ss_pred             ccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEEEECHHHhCCceEcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887765457999999999999999999999999999999


Q ss_pred             HHHhhcccCCceEEEeCCcccCcccHHHHHhhcCCC--------CcceeeeecceEEEEEEecCCceeEEEEecccccCC
Q 000459          242 VVDLAGCLGKSVKVELNGHRVPVKSFAEYVDMYPKS--------VTRFHERVNERWEICVTLSEGQFQQVSFVNGIATIK  313 (1484)
Q Consensus       242 l~dlA~~Ln~glkI~lnder~~~kgf~dYv~~~~~~--------~~~i~~~~~~~~EVAl~~s~~~~~~~SFVN~I~T~~  313 (1484)
                      ++|||++||+||+|+|||+|...+||++||++|++.        .+++|+..+.+|||||+|++++++++||||||+|++
T Consensus       241 lrdLAa~LnkGlkI~LndeR~~~~G~kdYV~~yl~~~~k~k~~~~~~i~e~~~~~~EVAl~~sd~~~~~~SFVNnI~T~~  320 (1465)
T PLN03237        241 VVDIAGCLGKTVKVELNGKRIPVKSFSDYVDLYLESANKSRPENLPRIYEKVNDRWEVCVSLSEGQFQQVSFVNSIATIK  320 (1465)
T ss_pred             HHHHHhccCCCcEEEEEecCCCCCCHHHHHHHHhhcccccCCCCCCccEecCCCeEEEEEEEeCCCceEEEEECcccCCC
Confidence            999996699999999999998888999999987642        234666668899999999998899999999999999


Q ss_pred             CcchhHhHHHHHHHHHHHHHHhccCCCCCChhhHhcceEEEEEEeecCCccCCcccccccccccccccccccCHHHHHhH
Q 000459          314 GGTHVDYVANQVANHVMAVVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEEFLKKV  393 (1484)
Q Consensus       314 GGTHv~gf~~aLt~~i~~~~~kk~K~~~i~~~dIregL~~vVsvki~nP~FegQTKekL~n~~~~~~~~~~l~~~f~~~~  393 (1484)
                      |||||+||+++|+++|++++++|+|+.+++++|||+||++||||+|+||+|+||||++|+|+++.|+++|.+++.|++..
T Consensus       321 GGTHv~g~~~aIt~~l~~~~~kK~k~~~l~~~DIregL~a~IsvkI~nP~FesQTKekLtn~~~~f~s~l~l~~~flk~~  400 (1465)
T PLN03237        321 GGTHVDYVTNQIANHVMEAVNKKNKNANIKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKV  400 (1465)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhCcEEEEEEeCCCCccCCcccCcccChHHHHHHHhccCHHHHhHH
Confidence            99999999999999999999887776789999999999999999999999999999999999999999999999999987


Q ss_pred             HhhHHHHHHHHHHhhhchHHHhhcccCCCCCcCCCCCccccccccCCCCCCCcEEEEecccchhHHHHhccccccCceee
Q 000459          394 TAKSGIVETLLSWANFKQSKDLKKNDGTKTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFG  473 (1484)
Q Consensus       394 ~~~~~Ive~il~~a~~r~~~~~kk~~~~kk~~l~gipKL~Dc~~ag~k~~~~~eLflvEGDSA~g~ak~Gr~~~~R~~qa  473 (1484)
                       .++.|+++++.+|++|++++++|++++++.++.++|||+||+.||++++++|||||||||||||||+|||+|+||+|||
T Consensus       401 -~~~~Ivekil~~A~ak~arel~k~k~~k~~~~~~ipKL~Dc~~aG~kd~~~ceLfLvEGDSAgGsAk~GR~vvdR~~qa  479 (1465)
T PLN03237        401 -MKSGIVENLLSWADFKQSKELKKTDGAKTTRVTGIPKLEDANEAGGKNSEKCTLILTEGDSAKALAVAGLSVVGRNYYG  479 (1465)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCcccccccccccCCccccEEEEEecCcCCchhhhhhcccCcccee
Confidence             7889999999999998888887777777677888999999999999999999999999999999999999999999999


Q ss_pred             ecccCccchhhhccchhhhhhcHhHHHHHHHhCCCCCCccCcccccccccEEEeecccccchhhhHHHHHHHHHHhhhhh
Q 000459          474 VFPLRGKLLNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFC  553 (1484)
Q Consensus       474 v~PLrGKiLNv~~a~~~~i~~N~Ei~~i~~~lG~~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~  553 (1484)
                      |||||||||||++|+.+||++|+||++|++||||++|.+|+|+++|||||||||||                        
T Consensus       480 IlPLRGKILNV~kAs~~kil~N~EI~~ii~aLGlgig~~y~d~~~LRYgkIiIMTD------------------------  535 (1465)
T PLN03237        480 VFPLRGKLLNVREASHKQIMNNAEIENIKQILGLQHGKQYESVKSLRYGHLMIMTD------------------------  535 (1465)
T ss_pred             eeccCCceehhccCcHHhhhcchHHHHHHHHhCCCcCcccCcccccccCcEEEEeC------------------------
Confidence            99999999999999999999999999999999999999999999999999999999                        


Q ss_pred             hcccCCCCCCchhhHHHHHHHhhhhhhhccCCEEEEeecceeEEEcc-CCeEEEEcChhhHHHHHHHhCCCCCccceEEe
Q 000459          554 FMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNK-NGKVLSFYSMPDYEAWKESLGGNASSWSIKYY  632 (1484)
Q Consensus       554 ~~~~aD~DGsHI~~Lll~ff~~~~p~Li~~~g~~~~~~tPl~kv~~k-g~~~~~~ys~~e~e~~~~~~~~~~~~~~ik~~  632 (1484)
                          ||||||||+||||||||+|||+||+.+||||+|+||||||+ + |++++||||++||++|+++++++..+|+||||
T Consensus       536 ----ADvDGsHIrgLLLtFF~r~~P~Li~~~Gfl~~~~tPL~Kv~-~~gk~~~~fys~~E~e~w~~~~~~~~~~~~IkyY  610 (1465)
T PLN03237        536 ----QDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKAT-RRGKKVLSFYSMPEYEEWKESLGGNATGWSIKYY  610 (1465)
T ss_pred             ----CCCCccHHHHHHHHHHHHhhHHhcccCCEEEEecCCeEEEE-ECCCeeEeecCHHHHHHHHHHhcccCCceeeEee
Confidence                99999999999999999999999997799999999999999 6 99999999999999999987643357999999


Q ss_pred             cCCCCCChhhHHHHhhccCccccceEEcCchhHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccccchHHHHHHHHHH
Q 000459          633 KGLGTSTSKEGKEYFQNITLHKKDFVWEDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELIL  712 (1484)
Q Consensus       633 KGLG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~RK~wi~~~~~~~~ld~~~~~~~~~dfi~~eli~  712 (1484)
                      ||||||+++|+||||+|++.|.+.|+|++++|.++|+|+|+++++++||+||.+|.|++|||++.+.++|+||||+|||+
T Consensus       611 KGLGe~~~~e~keyf~~~~~h~~~f~~~~~~~~~~i~laF~k~~~d~RK~Wl~~~~~~~~ld~~~~~i~~~dfinkeli~  690 (1465)
T PLN03237        611 KGLGTSTAKEGKEYFKNLGKHKKDFVWEDEQDGDAIELAFSKKKIEARKNWLRQYEPGTHLDQTQKDVKYSDFVNKELIL  690 (1465)
T ss_pred             ccCCCCCHHHHHHHHHhHHhceEEEEECCCCcHHHHHHHhCCccHHHHHHHHHhCCCCccccCCCCcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccCccccCCCCccceehhhhhcCCCCCCceeEEeeccccccccCCCCcccHHHHHHHhhcccccCCcccccc
Q 000459          713 FSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQ  792 (1484)
Q Consensus       713 ys~~~~~RaIP~~~DGLKP~QRkIL~~~~~~~l~~~~Kva~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~  792 (1484)
                      |||+||.|||||++||||||||||||+||++|+++++|||||+|+||+|++|||||+|||+|||+|||+||||||||||+
T Consensus       691 ySm~~i~RAIP~v~DGLKPvQRkILya~~k~~~~~~~KvAqlvG~V~e~~~YHHGd~Sly~tiV~MAQdfvGsnnipLl~  770 (1465)
T PLN03237        691 FSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVAQLSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLL  770 (1465)
T ss_pred             HHHHHHhccCCchhcCCCchHhHHHHHHHhcCCccccchhhhHHHHhhhccCCCcHHHHHHHHHHHhhccccccccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcCCCCCCCCccccccccccccHHHhhhCCCCCcCcccccCCCCCccCccccCCCCceeeecCCcceeeeeecCCC
Q 000459          793 PNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIP  872 (1484)
Q Consensus       793 ~~GnFGsr~~gG~d~Aa~RYi~~rls~~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGa~GIatG~sT~IP  872 (1484)
                      |+||||||++||+|||||||||||||++++.||+++|+++|+|+||||+++||+||||+|||||||||+||||||||+||
T Consensus       771 p~GnFGSR~~gG~daAA~RYietrLs~ia~~lf~~~Dd~~l~~~n~Dg~~iEP~~y~piiP~lLVNGa~GIatG~sT~IP  850 (1465)
T PLN03237        771 PNGQFGTRLQGGKDHASARYIFTRLSPITRFLFPKDDDILLDYLNEDGQSIEPTWYMPIIPTVLVNGAEGIGTGWSTFIP  850 (1465)
T ss_pred             cCCCCCCCCCCCCcccccccceechhHHHHHHhccCCccccCccCCCCcccCCceecCCCcceeecCCcceecccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCccccCCCcEEEEcccC-CCceEEEEEEEEEEEeCceEEEEecCCCCCHHHHHHHHH
Q 000459          873 NYNPRDIVANVRRLLNGEMMEPMHPWYRGFGGTIEKTASK-EAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLE  951 (1484)
Q Consensus       873 ~hNp~eVi~~i~~~L~~~~~~p~~P~~~Gf~G~I~~~~~~-g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~i~  951 (1484)
                      ||||+|||+||+++|+|+++.||+|||+||+|+|+..+.+ |+| +|+++|+|+++++++|+||||||++||++|+++|+
T Consensus       851 phNp~eVi~~i~~~i~~e~~~~~~P~~~gf~G~I~~~~~t~g~g-~~~~rG~~~~~~~~~i~ITElP~~~~t~~y~~~le  929 (1465)
T PLN03237        851 NYNPRDIVANIRRLLNGESMEPMHPWYRGFKGTIEKTASKEGGC-TYTITGLYEEVDETTLRITELPIRRWTDDYKEFLE  929 (1465)
T ss_pred             CCCHHHHHHHHHHHhcCCCcCCCCCeecCCCceEeEhhhcCCCc-eEEEEEEEEEecCCeEEEEeCCCeecchHHHHHHH
Confidence            9999999999999999999999999999999999988766 777 99999999999999999999999999999999999


Q ss_pred             HHHhcC----CccccccccccCCCceEEEEEeCchhhHHHHHHHHHhHccceeecccceEEEEcCCCccccccCHHHHHH
Q 000459          952 SIIDQN----DSFIRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILE 1027 (1484)
Q Consensus       952 ~l~~~~----~~~I~d~~d~s~~~~v~f~I~lk~~~~~~~~~e~L~K~fkL~ss~s~~Nmvlfd~~Gki~ky~s~~eIL~ 1027 (1484)
                      ++++..    .++|+||+|+|++++|||+|+|+++.+++.++++|+|+|+|+++|+++||+|||++|++|+|+++++||+
T Consensus       930 ~i~~~~~~~k~~~I~d~~d~s~~~~vr~vI~lk~~~~~~~~~~~L~k~~kL~~s~~~~nm~l~d~~G~i~k~~~~~~Il~ 1009 (1465)
T PLN03237        930 SLKTDNNKNKDPFIKDVKAYNDDTTVHFEVILSEENMLAAKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILE 1009 (1465)
T ss_pred             HHHHHHhccCcCceeechhccCCceEEEEEEeccchhHHHHHHHHHHhhcCcceeceeEEEEEcCCCCcceeCCHHHHHH
Confidence            887532    6789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhheecceeEecccchHHHHHHHHHcCCCCCCCCCccHHHHhhcCC
Q 000459         1028 EFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSIEAVVAGAT 1107 (1484)
Q Consensus      1028 eF~~~Rle~y~kRk~~lL~kl~~~l~~LenkvrFI~~Vi~geI~v~nkkk~elv~eL~~~gF~~~~~~sk~~~~a~~~~~ 1107 (1484)
                      +||++|+++|++|+++++.+++.++.++++++|||++||+|+|+|+|++|++|+++|+++||+++++..+....+..+..
T Consensus      1010 ~F~~~Rl~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~ 1089 (1465)
T PLN03237       1010 EFFHLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKADLVEELRQKGFTPFPKKAKSVEAAVAGAT 1089 (1465)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHHHHHHHHHcCCCccchhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999887665443332222


Q ss_pred             ccccccccCcc--cccCCChhcHHHHHcCcccccCHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHh
Q 000459         1108 DETEESEENPE--VVNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELD 1185 (1484)
Q Consensus      1108 e~~e~~ee~~e--~~~~lt~~~ydyLL~M~L~~LT~eevekL~~E~~el~~ei~~L~~ts~~dLW~~DLd~f~~~l~~~~ 1185 (1484)
                      ++.++++++.+  ...+....+|||||+||||+||.|++++|++|++++++|++.|+++||++||++||++|+++|++++
T Consensus      1090 ~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~E~~~kL~~~~~~k~~el~~l~~~t~~~lW~~DLd~f~~~~~~~~ 1169 (1465)
T PLN03237       1090 DDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLD 1169 (1465)
T ss_pred             ccccccccccccccccccccccchHHhcCcHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            22111111100  0011223479999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhh--cCCCCCCCCccccccCCcc--ccccccCCCchhhccc-----cCCCcccccccCCCCcCC-CcC
Q 000459         1186 KSDARAEEERMKIK--GNGNGDAGPKIVAKRAPKN--ARKNDKKSNNARATEA-----MGEMDNVTKVVKPKGRAG-LKK 1255 (1484)
Q Consensus      1186 ~~~~~~~~~~~~~~--~~~~k~~~~k~~~~~~pkk--~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~pk~~~~-~~~ 1255 (1484)
                      .++++.++.+.+..  +.++..++.|+..+++||+  |+++++++...+.+++     ..++++++++++|+++.+ +++
T Consensus      1170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~v~p~~~~~~~~~ 1249 (1465)
T PLN03237       1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKK 1249 (1465)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccccccCCCcccCccccccccchhhcccccccccCCCceeecCccccccccc
Confidence            88877776554332  2222223344466666676  6677777666555432     234468888999999866 567


Q ss_pred             CCCCcCCCCCCCcccChHHHHhhhhhhhccccCCCCCCCCCcccccccCCccccCCCchhhhh-hccccc-ccCCCCccc
Q 000459         1256 APAEKLDDDEEDEVPDLKQRLAKLNEQLASTKLEPSPDQSGVMETEKVQVPAKKKEPSKRTAA-QKKVVT-VETSDSEDE 1333 (1484)
Q Consensus      1256 ~~~~~~~~~~~~~~~~~~~r~aa~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~r~aa-kk~~~~-~~~~~~~~~ 1333 (1484)
                      +|+++.+..++++++++++|+|+|+       ++|+|++++.|++.+++.|++      |+++ +++.++ ++.+++   
T Consensus      1250 ~pa~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--- 1313 (1465)
T PLN03237       1250 APAAAKEKEEEDEILDLKDRLAAYN-------LDSAPAQSAKMEETVKAVPAR------RAAARKKPLASVSVISDS--- 1313 (1465)
T ss_pred             CccccccCcccccHHHHHHHHHhcc-------ccCCCCcccccccccccchhh------hhccccccCCCccccCcc---
Confidence            7777655679999999999999999       999999999888888777763      3443 222232 444432   


Q ss_pred             ccCCCchhhhhcCcc-----ccccCCCCcccC-cccCCChhhhhcCCCCCCCCcchhhhhhhhhhccCCCCC---CcHHH
Q 000459         1334 IIIDDDEAFEIAAPE-----EGKKGGRKAAGN-SKAAKPAAETKKRGPAKKQQPEASLGQRLLTEMLKPAES---SPEKK 1404 (1484)
Q Consensus      1334 ~~~~~~~~~~~~~~~-----~~~~~~~k~a~~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---sp~~k 1404 (1484)
                          |||||+++++.     .+++|||||||+ .++|+|||++|||+|++.+     .+|.++||||||+|.   |||||
T Consensus      1314 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~kk 1384 (1465)
T PLN03237       1314 ----DDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQ-----SGQKLLTEMLKPAEAIGISPEKK 1384 (1465)
T ss_pred             ----cccccccchhhcchHHHHHhcCCCcccccCcCCCCCccccCCCcccCC-----CcchhHHHHhchhhcCCCCCccc
Confidence                33355556554     278889999998 6777888888999998543     245599999999988   89999


Q ss_pred             hhhhccCCCCcccCCccccCCCCCC----CCCCCCCCccccccCCCCCCCccccccccceeeecCCcccccCCCCCCCCC
Q 000459         1405 VRKMRASPFNKKSGSMLGRAGTIEE----PSGSSPSTSEEVAEVLPPKARPQRANRRQARYVLSDSESEKATDDSEFDED 1480 (1484)
Q Consensus      1405 ~~km~~sp~~kk~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~r~~r~~r~~~~y~~s~s~~~~~~~~~~f~~~ 1480 (1484)
                      |||||+|||||||||||+|+++.++    .+.+.||++++.+-+.++++|||||||+++.||+||||||++ ||||||+|
T Consensus      1385 ~~~~~~~p~~kk~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~r~~~~~r~~~~~~~~~~e~~~~-d~~df~~~ 1463 (1465)
T PLN03237       1385 VRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESA-DDSDFDDD 1463 (1465)
T ss_pred             chhhccCCccccCcchhhcccccccccCccccCCCCcccccccccccCCcchhhhcCCceEEecCcccccc-cccccccc
Confidence            9999999999999999999998764    233444444443445567999999999999999999999955 99999987


Q ss_pred             CC
Q 000459         1481 ED 1482 (1484)
Q Consensus      1481 ~~ 1482 (1484)
                      +|
T Consensus      1464 ~d 1465 (1465)
T PLN03237       1464 ED 1465 (1465)
T ss_pred             CC
Confidence            65

>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PHA02592 52 DNA topisomerase II medium subunit; Provisional Back     alignment and domain information
>smart00434 TOP4c DNA Topoisomerase IV Back     alignment and domain information
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II Back     alignment and domain information
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>PRK05561 DNA topoisomerase IV subunit A; Validated Back     alignment and domain information
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive Back     alignment and domain information
>PRK05560 DNA gyrase subunit A; Validated Back     alignment and domain information
>TIGR01063 gyrA DNA gyrase, A subunit Back     alignment and domain information
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial Back     alignment and domain information
>PRK13979 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09631 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>PRK12758 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>PRK09630 DNA topoisomerase IV subunit A; Provisional Back     alignment and domain information
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit Back     alignment and domain information
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA Back     alignment and domain information
>PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd00188 TOPRIM Topoisomerase-primase domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1484
4gfh_A1103 Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 0.0
4gfh_F1099 Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 0.0
3qx3_A803 Human Topoisomerase Iibeta In Complex With Dna And 0.0
1bgw_A793 Topoisomerase Residues 410-1202 Length = 793 0.0
4fm9_A763 Human Topoisomerase Ii Alpha Bound To Dna Length = 0.0
2rgr_A759 Topoisomerase Iia Bound To G-segment Dna Length = 7 0.0
3l4k_A722 Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 0.0
1zxm_A400 Human Topo Iia Atpase/amp-pnp Length = 400 1e-121
1qzr_A418 Crystal Structure Of The Atpase Region Of Saccharom 1e-106
1pvg_A418 Crystal Structure Of The Atpase Region Of Saccharom 1e-100
2xco_A726 The 3.1a Crystal Structure Of The Catalytic Core (B 6e-31
2xcr_B726 The 3.5a Crystal Structure Of The Catalytic Core (B 2e-30
2xkj_E767 Crystal Structure Of Catalytic Core Of A. Baumannii 2e-25
2xcs_B692 The 2.1a Crystal Structure Of S. Aureus Gyrase Comp 9e-25
2xkk_A767 Crystal Structure Of Moxifloxacin, Dna, And A. Baum 2e-24
3ifz_A508 Crystal Structure Of The First Part Of The Mycobact 1e-15
3ilw_A470 Structure Of Dna Gyrase Subunit A N-Terminal Domain 2e-14
4ddq_A502 Structural Plasticity Of The Bacillus Subtilis Gyra 3e-14
2nov_A496 Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Cr 2e-13
2y3p_A522 Crystal Structure Of N-Terminal Domain Of Gyra With 5e-13
1ab4_A493 59kda Fragment Of Gyrase A From E. Coli Length = 49 6e-13
3lpx_A500 Crystal Structure Of Gyra Length = 500 6e-13
3nuh_A525 A Domain Insertion In E. Coli Gyrb Adopts A Novel F 6e-12
1zvu_A716 Structure Of The Full-Length E. Coli Parc Subunit L 3e-11
2inr_A514 Crystal Structure Of A 59 Kda Fragment Of Topoisome 4e-11
1ei1_A391 Dimerization Of E. Coli Dna Gyrase B Provides A Str 7e-11
3foe_C268 Structural Insight Into The Quinolone-Dna Cleavage 3e-10
1kij_A390 Crystal Structure Of The 43k Atpase Domain Of Therm 3e-10
4hyp_A215 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 1e-08
3g7e_A203 Crystal Structure Of E. Coli Gyrase B Co-Complexed 1e-08
1kzn_A205 Crystal Structure Of E. Coli 24kda Domain In Comple 1e-08
4duh_A220 Crystal Structure Of 24 Kda Domain Of E. Coli Dna G 1e-08
1aj6_A219 Novobiocin-resistant Mutant (r136h) Of The N-termin 3e-08
3nuh_B420 A Domain Insertion In E. Coli Gyrb Adopts A Novel F 5e-08
1s16_A390 Crystal Structure Of E. Coli Topoisomerase Iv Pare 2e-07
4em7_A226 Crystal Structure Of A Topoisomerase Atp Inhibitor 2e-06
4hz5_A216 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 6e-06
3lnu_A408 Crystal Structure Of Pare Subunit Length = 408 8e-06
2zjt_A247 Crystal Structure Of Dna Gyrase B' Domain Sheds Lig 1e-05
3ig0_A242 Crystal Structure Of The Second Part Of The Mycobac 2e-05
4hz0_A213 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 3e-05
3fv5_A201 Crystal Structure Of E. Coli Topoisomerase Iv Co-Co 4e-05
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 Back     alignment and structure
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 Back     alignment and structure
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 Back     alignment and structure
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 Back     alignment and structure
>pdb|1ZXM|A Chain A, Human Topo Iia Atpase/amp-pnp Length = 400 Back     alignment and structure
>pdb|1QZR|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Bound To Icrf-187 (Dexrazoxane) Length = 418 Back     alignment and structure
>pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418 Back     alignment and structure
>pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 Back     alignment and structure
>pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 Back     alignment and structure
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 Back     alignment and structure
>pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 Back     alignment and structure
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 Back     alignment and structure
>pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Breakage And Reunion Domain At 2.7 A Resolution Length = 508 Back     alignment and structure
>pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain Length = 470 Back     alignment and structure
>pdb|4DDQ|A Chain A, Structural Plasticity Of The Bacillus Subtilis Gyra Homodimer Length = 502 Back     alignment and structure
>pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal Structure Of A Gram-Positive Quinolone Target Length = 496 Back     alignment and structure
>pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 Length = 522 Back     alignment and structure
>pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli Length = 493 Back     alignment and structure
>pdb|3LPX|A Chain A, Crystal Structure Of Gyra Length = 500 Back     alignment and structure
>pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 525 Back     alignment and structure
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit Length = 716 Back     alignment and structure
>pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv Subunit A (Grla) From Staphylococcus Aureus Length = 514 Back     alignment and structure
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural Mechanism For Activating The Atpase Catalytic Center Length = 391 Back     alignment and structure
>pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 Back     alignment and structure
>pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390 Back     alignment and structure
>pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 Back     alignment and structure
>pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With Inhibitor Length = 203 Back     alignment and structure
>pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With Clorobiocin Length = 205 Back     alignment and structure
>pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B In Complex With Small Molecule Inhibitor Length = 220 Back     alignment and structure
>pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24 Kda Fragment Of Dna Gyrase B Complexed With Novobiocin At 2.3 Angstroms Resolution Length = 219 Back     alignment and structure
>pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 Back     alignment and structure
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda Subunit Complexed With Adpnp Length = 390 Back     alignment and structure
>pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor Length = 226 Back     alignment and structure
>pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity Length = 216 Back     alignment and structure
>pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit Length = 408 Back     alignment and structure
>pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 Back     alignment and structure
>pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 Back     alignment and structure
>pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 213 Back     alignment and structure
>pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed With Inhibitor Length = 201 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1484
3l4j_A757 DNA topoisomerase 2; topoisomerase, protein-DNA co 0.0
3qx3_A803 DNA topoisomerase 2-beta; toprim domain, winged-he 0.0
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 0.0
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 0.0
2xkj_E767 Topoisomerase IV; type IIA topoisomerase; 2.20A {A 1e-31
2xcs_B692 DNA gyrase subunit B, DNA gyrase subunit A; isomer 1e-24
3k9f_C268 DNA topoisomerase 4 subunit B; quinolone, topoisom 1e-19
3m4i_A242 DNA gyrase subunit B; GYRB, toprim, type II topois 9e-18
3nuh_B420 DNA gyrase subunit B; topoisomerase, supercoiling, 1e-16
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 2e-15
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 2e-15
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 7e-15
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
3ilw_A470 DNA gyrase subunit A; DNA topology, topoisomerase, 3e-13
3lpx_A500 GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-b 3e-13
2nov_A496 DNA topoisomerase 4 subunit A; protein, PARC, TOPO 2e-12
2inr_A514 DNA topoisomerase 4 subunit A; topoisomerase II fo 2e-12
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 3e-12
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 1e-11
1zvu_A716 Topoisomerase IV subunit A; beta-pinwheel, ATPase, 7e-11
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 5e-10
4duh_A220 DNA gyrase subunit B; structure-based drug design, 6e-09
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 4e-07
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 Back     alignment and structure
 Score =  878 bits (2269), Expect = 0.0
 Identities = 367/792 (46%), Positives = 491/792 (61%), Gaps = 59/792 (7%)

Query: 426  VRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVR 485
            +    KLEDAN AG +   +CTL+LTEGDSA +LA+AGL+VVGRD +G +PLRGK+LNVR
Sbjct: 3    ITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVR 62

Query: 486  EASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILI 545
            EAS++Q+L N+EI  IKKI+GL+   +Y + KSLRYGHLMIMTD                
Sbjct: 63   EASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTD---------------- 106

Query: 546  FAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKAT--NKNGK 603
                        QDHDGSHIKGL+INF+ S +P LL I  FL+EFITPI+K +       
Sbjct: 107  ------------QDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKN 154

Query: 604  VLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVWEDDQ 663
             ++FY+MPDYE W+E    +  +W  KYYKGLGTS ++E +EYF N+  H K F      
Sbjct: 155  TIAFYNMPDYEKWREEE-SHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGN 213

Query: 664  DGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIP 723
            D + I+LAFSKKK + RK+WL Q+EPG  LD   K I  SDF+NKELILFS+AD  RSIP
Sbjct: 214  DKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNIRSIP 273

Query: 724  SMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFV 783
            +++DG KPGQRK+L+  FK+N   E KVAQ + YVSE +AYHHGEQSLA TI+G+AQ+FV
Sbjct: 274  NVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFV 333

Query: 784  GSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNEDGQQI 843
            GSNNI LL PNG FGTR  GGKDAA+ARYI+T L+ +TR +F   DD L  Y+ ED + +
Sbjct: 334  GSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTV 393

Query: 844  EPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWYRGFG 903
            EP WY+PI+P +LVNG+EGIGTGWS+YIP +NP +I+ N+R L+N E +E MHPW+RG+ 
Sbjct: 394  EPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWT 453

Query: 904  GTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQND---SF 960
            GTIE+         Y + G IE++ +  L I ELP R WT   +E+L   +  ND    +
Sbjct: 454  GTIEEIEPL----RYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPW 509

Query: 961  IRGFRQYSDDTTVDFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYD 1020
            I+   +  DD  + F + LS E M +T++ G  ++FKL + IS  NM  FD  G IKKY+
Sbjct: 510  IKDMEEQHDD-NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYN 568

Query: 1021 TPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKRTDL 1080
            +  +IL EF+++RLE+Y+KRK    E L+ E+ K   +V+FI  ++  E+ V N+ R  +
Sbjct: 569  SVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAI 628

Query: 1081 LLELRQKGFTPFPKNSKSIEAVVAGA-----------------TDETEESEENPEVVNGV 1123
            + EL   GF  F K  K                           + + E  EN       
Sbjct: 629  IQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEE 688

Query: 1124 QSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDE 1183
                Y+YLL M I +LT E+ Q LL  + +   E+++L K + + +W  DL A       
Sbjct: 689  LYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF---EVG 745

Query: 1184 LDKSDARAEEER 1195
              +   R  E R
Sbjct: 746  YQEFLQRDAEAR 757
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418 Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Length = 400 Back     alignment and structure
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 Back     alignment and structure
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 Back     alignment and structure
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 Back     alignment and structure
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 Back     alignment and structure
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Length = 408 Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A* Length = 470 Back     alignment and structure
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A Length = 500 Back     alignment and structure
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A* Length = 496 Back     alignment and structure
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Length = 514 Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Length = 201 Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 391 Back     alignment and structure
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli} Length = 716 Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Length = 226 Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Length = 220 Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Length = 369 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1484
d1bjta_760 e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra 0.0
d1ab4a_493 e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxI 2e-88
d1pvga2239 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's 4e-61
d1ei1a2219 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli 3e-39
d1kija2212 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermoph 3e-38
d1pvga1161 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's 5e-35
d1kija1172 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermop 3e-07
d1s16a1167 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B 8e-07
d1s14a_168 d.122.1.2 (A:) Topoisomerase IV subunit B {Escheri 7e-05
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  575 bits (1482), Expect = 0.0
 Identities = 368/795 (46%), Positives = 497/795 (62%), Gaps = 57/795 (7%)

Query: 422  KTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKL 481
            +   +    KLEDAN AG +   +CTL+LTEGDSA +LA+AGL+VVGRD +G +PLRGK+
Sbjct: 1    RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKM 60

Query: 482  LNVREASSNQVLNNSEIGNIKKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLW 541
            LNVREAS++Q+L N+EI  IKKI+GL+   +Y + KSLRYGHLMIMTDQ           
Sbjct: 61   LNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQ----------- 109

Query: 542  FILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKN 601
                             DHDGSHIKGL+INF+ S +  LL I  FL+EFITPI+K +   
Sbjct: 110  -----------------DHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITK 152

Query: 602  GK--VLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVW 659
                 ++FY+MPDYE W+E    +  +W  KYYKGLGTS ++E +EYF N+  H K F  
Sbjct: 153  PTKNTIAFYNMPDYEKWRE-EESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHS 211

Query: 660  EDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQ 719
                D + I+LAFSKKK + RK+WL Q+EPG  LD   K I  SDF+NKELILFS+AD  
Sbjct: 212  LQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNI 271

Query: 720  RSIPSMVDGLKPGQRKILFCSFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMA 779
            RSIP+++DG KPGQRK+L+  FK+N   E KVAQ + YVSE +AYHHGEQSLA TI+G+A
Sbjct: 272  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLA 331

Query: 780  QDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSPITRFLFPKDDDKLLDYLNED 839
            Q+FVGSNNI LL PNG FGTR  GGKDAA+ARYI+T L+ +TR +F   DD L  Y+ ED
Sbjct: 332  QNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQED 391

Query: 840  GQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWY 899
             + +EP WY+PI+P +LVNG+EGIGTGWS+YIP +NP +I+ N+R L+N E +E MHPW+
Sbjct: 392  EKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWF 451

Query: 900  RGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQNDS 959
            RG+ GTIE+         Y + G IE++ +  L I ELP R WT   +E+L   +  ND 
Sbjct: 452  RGWTGTIEEIEPL----RYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 507

Query: 960  FIRGFRQYSDDTTV--DFEVFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIK 1017
                 +   +       F + LS E M +T++ G  ++FKL + IS  NM  FD  G IK
Sbjct: 508  IKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIK 567

Query: 1018 KYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLENKVRFILGVVNGEIVVNNRKR 1077
            KY++  +IL EF+++RLE+Y+KRK    E L+ E+ K   +V+FI  ++  E+ V N+ R
Sbjct: 568  KYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPR 627

Query: 1078 TDLLLELRQKGFTPFPKNSK---------------SIEAVVAGATDETEESEENPEVVNG 1122
              ++ EL   GF  F K  K                ++   +   DE    E+   V+NG
Sbjct: 628  NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 687

Query: 1123 VQ--SIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQ 1180
             +     Y+YLL M I +LT E+ Q LL  + +   E+++L K + + +W  DL A ++ 
Sbjct: 688  PEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 747

Query: 1181 LDELDKSDARAEEER 1195
              E  + DA   E R
Sbjct: 748  YQEFLQRDA---EAR 759
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 493 Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 219 Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 212 Back     information, alignment and structure
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 Back     information, alignment and structure
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 172 Back     information, alignment and structure
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 168 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1484
d1bjta_760 DNA topoisomerase II, C-terminal fragment (residue 100.0
d1ab4a_493 DNA Gyrase A {Escherichia coli [TaxId: 562]} 100.0
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 100.0
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 100.0
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 100.0
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 100.0
d1pvga1161 DNA topoisomerase II {Baker's yeast (Saccharomyces 100.0
d1kija1172 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 99.98
d1ei1a1172 DNA gyrase B {Escherichia coli [TaxId: 562]} 99.97
d1s16a1167 Topoisomerase IV subunit B {Escherichia coli [TaxI 99.97
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.31
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.3
d1x75a1132 DNA Gyrase A {Escherichia coli [TaxId: 562]} 99.18
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 98.57
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 98.2
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 98.19
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 97.74
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 97.49
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.26
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 97.17
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 96.97
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 96.94
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 96.76
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 96.49
d1ab4a_493 DNA Gyrase A {Escherichia coli [TaxId: 562]} 95.16
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 94.98
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 94.72
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 87.52
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=1740.77  Aligned_cols=736  Identities=50%  Similarity=0.844  Sum_probs=682.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHCCCHHHHHHCHHHHHH
Q ss_conf             77768999865245436998999937998316635678770244346740363126764400211345666220748899
Q 000459          422 KTEDVRGISKLEDANLAGGRNSEQCTLILTEGDSAKALAMAGLSVVGRDRFGVFPLRGKLLNVREASSNQVLNNSEIGNI  501 (1484)
Q Consensus       422 kk~~l~gipKL~Da~~ag~k~~~~~eLfL~EGDSA~g~ak~g~~~~~r~~q~v~PLrGK~LNv~~a~~~~i~~N~Ei~~i  501 (1484)
                      |++++.|||||+||+.||++++.+|||||||||||+|+|++|++++|||||||||||||+|||++++.+++++|+||++|
T Consensus         1 ~k~~~~~~pkl~d~~~~g~~~~~~~~l~~~EGdSA~~~~~~g~~~~~rd~~~v~plrGK~lN~~~~~~~~~~~n~ei~~l   80 (760)
T d1bjta_           1 RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAI   80 (760)
T ss_dssp             CCCCCCSCTTCBCCTTTTSGGGGGCEEEEEESHHHHHHHHHHHHHHCSSSEEEEEEECCCCSCCC------CCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHCHHHHHH
T ss_conf             97646899876110003799831108999656375232337663216655788533872030236988888618999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99868888876576223565229995142111002457999998877654320124799998314679999996314111
Q 000459          502 KKILGLKQGVEYNNVKSLRYGHLMIMTDQVLLAPLSFLLWFILIFAWITTFCFMLAQDHDGSHIKGLLINFIHSFWPSLL  581 (1484)
Q Consensus       502 ~~~lGl~~~~~~~~~~~LRYgkiiImtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~DGsHI~~Lll~ff~~~~p~Li  581 (1484)
                      ++||||++|.+|+|+++|||||||||||                            |||||+||+||||||||+|||+||
T Consensus        81 ~~~lG~~~~~~~~~~~~lrY~~i~imtD----------------------------aD~DG~hI~~Lll~ff~~~~p~l~  132 (760)
T d1bjta_          81 KKIMGLQHRKKYEDTKSLRYGHLMIMTD----------------------------QDHDGSHIKGLIINFLESSFLGLL  132 (760)
T ss_dssp             HHHHTCCSSBCCSCSSSSSCSEEEEEEC---------------------------------CCHHHHHHHHHHHHBTTTT
T ss_pred             HHHHCCCCCCCCCCHHHCCCCCEEEEEC----------------------------CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9997899898878600177786799988----------------------------988704799999999998658972


Q ss_pred             CCCCEEEEEECCEEEEEC--CCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             259789994044137872--587079970803599999980899986324884479878716689985204752101388
Q 000459          582 KIPSFLVEFITPIVKATN--KNGKVLSFYSMPDYEAWKESLGGNASSWSIKYYKGLGTSTSKEGKEYFQNITLHKKDFVW  659 (1484)
Q Consensus       582 ~~~g~i~~~~tPl~k~~~--kg~~~~~fys~~e~e~~~~~~~~~~~~~~ik~~KGLG~~~~~~~~e~~~~~~~~~~~~~~  659 (1484)
                      +.+||||+|+||||||+.  +++.+.+||+++||++|+..... ..+|+||||||||||+++|+||||+|+++|.+.|++
T Consensus       133 ~~~g~i~~~~~Pl~~~~~~~~~~~~~~~y~~~e~~~~~~~~~~-~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~~~~~~  211 (760)
T d1bjta_         133 DIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESH-KFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHS  211 (760)
T ss_dssp             TSTTSEEECCCCSEEEEECSSCCEEEEESSHHHHHHHHHHTTT-TSCEEECCCCCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCEEEEECCCCCCEEEECCHHHHHHHHHHHCC-CCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEE
T ss_conf             4289899996893899846887503542022368899987067-655421004664445601347775360001311576


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHH
Q ss_conf             37001999999850123689998651038997665565313538999999999999742066673223887763000244
Q 000459          660 EDDQDGEAIELAFSKKKIEARKKWLLQFEPGNHLDQKEKYIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFC  739 (1484)
Q Consensus       660 ~~~~~~~~~~~~f~~~~~~~rk~~~~~~~~~~~ld~~~~~~~~~~fi~~e~i~ys~~~~~RaIP~~~DGLKP~QRkIL~~  739 (1484)
                      +++++.+.++++|+++.+++||+||++|.|+++++++...++|+||+++||++|||+||.|||||++||||||||||||+
T Consensus       212 ~~~~~~~~~~~~F~k~~~d~RKewl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~RaiP~~~DGlKp~qRkil~~  291 (760)
T d1bjta_         212 LQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYG  291 (760)
T ss_dssp             CC---------------------CCCCSCC---------------CCTHHHHHHHHHHHHHHSCBTTTCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHH
T ss_conf             46125789999985224622789876224221124454650099999888999778877613870442236888999999


Q ss_pred             HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             31089999961677501002223577796519999998411554577522102577876788899876653511121457
Q 000459          740 SFKRNFIKEAKVAQFSGYVSEHSAYHHGEQSLASTILGMAQDFVGSNNINLLQPNGQFGTRNQGGKDAASARYIFTRLSP  819 (1484)
Q Consensus       740 ~~k~~~~~~~KvA~l~G~V~~~~~YHHGe~Sl~~tiv~mAQ~f~Gsnn~~Ll~~~GnFGsr~~gG~~aAa~RYi~~rLs~  819 (1484)
                      |++++++++.||+|++|+|+++|+|||||+|||+|||+|||+|+||||+|||+|+||||||.+||++||||||||||||+
T Consensus       292 ~~~~~~~~~~k~~k~a~~v~~~~~yhHGe~sl~~aiv~maQ~f~gsnn~~ll~~~G~fGsr~~~g~~~AA~RYietrLs~  371 (760)
T d1bjta_         292 CFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNK  371 (760)
T ss_dssp             HHHHTCCSCEEHHHHHHHHHHHHTCCSSSCCHHHHHHHHHCCSTTSCSSCSEEEESCCCCTTTTSTTCCCGGGCEEEECT
T ss_pred             HHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98736898776032105244530577897513678999974543045365340468866667899852678899864778


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             78630898995766554789973576434897756630288640211205899999798999999987399988997622
Q 000459          820 ITRFLFPKDDDKLLDYLNEDGQQIEPTWYMPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLNGEMMEPMHPWY  899 (1484)
Q Consensus       820 ~~~~lf~~~dd~~l~~~~~Dg~~~EP~~y~piiP~vLvNGs~GIatG~sT~IP~hNp~eVi~a~~~~L~~~~~~p~~P~~  899 (1484)
                      +++.||+++|+++|+|+++||+.+||.||||+||||||||++||||||||+||||||.|||+|++++|+|+++.++.|||
T Consensus       372 ~~~~lf~~~D~~~l~~~~~dg~~iEP~~y~piiP~lLvNGs~GIatG~aT~IPphNp~eVi~~i~~~i~~~~~~~~~P~~  451 (760)
T d1bjta_         372 LTRKIFHPADDPLYKYIQEDEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWF  451 (760)
T ss_dssp             THHHHSCGGGGGGSCEEEETTEEEEESCCCCSSCHHHHTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCCCCCCBCC
T ss_pred             HHHHHHCCCCCCEEECCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCCC
T ss_conf             88877302566610035688860475410467899997551012365520567645788999999983870332148874


Q ss_pred             CCCCCEEEECCCCCCCEEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCEEEE
Q ss_conf             5887089981357886199999999998070699982388788789999999998128---8543301212588713999
Q 000459          900 RGFGGTIEKTASKEAGVTYTVTGIIEEVNETTLRIKELPIRRWTQDYREFLESIIDQN---DSFIRGFRQYSDDTTVDFE  976 (1484)
Q Consensus       900 ~Gf~G~I~~~~~~g~G~~~~~~G~~e~~~~~~i~ITELP~~~~t~~y~e~i~~l~~~~---~~~I~d~~d~s~~~~v~i~  976 (1484)
                      +||+|.|+...+   | +|.++|+|+..++++|+|||||||+||++|+++|++++..+   .++|.+++|+| +++|+|+
T Consensus       452 ~Gf~G~i~~~~~---g-~~~~~g~~e~~~~~~I~ITELP~gvwt~~~~E~i~~ll~~~~K~~~~i~d~~d~s-~~~Vr~v  526 (760)
T d1bjta_         452 RGWTGTIEEIEP---L-RYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQH-DDNIKFI  526 (760)
T ss_dssp             TTCCSEEEEEET---T-EEEEECEEEEEETTEEEEEECCTTCCHHHHHHHHHHHHSCCTTSCCCCCEEEECC-SSSCCEE
T ss_pred             CCCCCCCCCCCC---C-CEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC-CCCCEEE
T ss_conf             555421002343---3-2699999864278749998144110024699999998740234676310000256-6653169


Q ss_pred             EEECCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99274024788999998670561200255078974899620006989999999999999999999999999999999998
Q 000459          977 VFLSEESMMRTKQEGLLKKFKLTTTISTSNMHLFDSKGVIKKYDTPEQILEEFFHIRLEFYEKRKKVQLENLELELLKLE 1056 (1484)
Q Consensus       977 I~lk~~~~~~~~~~~L~k~tkL~ssis~~Nmvl~d~~Gki~ky~s~~eIL~~F~~~Rle~y~kRk~~ll~kl~~~l~~Le 1056 (1484)
                      |+++++.+++.+.++|+++|+|+++++++||++||.+|++|+|.++++||++|+++|+++|++|++|++.+++.++++++
T Consensus       527 I~lk~~~~~~~~~~~l~k~~kL~~s~s~~Nm~l~d~~g~i~k~~sl~eIL~~f~~~Rle~y~kRk~~~l~~l~~el~~l~  606 (760)
T d1bjta_         527 ITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYS  606 (760)
T ss_dssp             EECCHHHHHHHHHHCHHHHTTCEEEEECTTEEEECTTSCEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98434200000111355531001022120156876888631112399999999999999986689999999999999988


Q ss_pred             HHHHHHHHEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCH-----HHHHH-----CC---C-CC---CCCCCCCCCC
Q ss_conf             6787753103143676165437999999973999898898537-----88740-----67---8-63---3112369532
Q 000459         1057 NKVRFILGVVNGEIVVNNRKRTDLLLELRQKGFTPFPKNSKSI-----EAVVA-----GA---T-DE---TEESEENPEV 1119 (1484)
Q Consensus      1057 nkirFI~~Vi~~~I~i~~k~k~elv~eL~~~gF~~~~~~sk~~-----~~a~~-----~~---~-e~---~~~~ee~~~~ 1119 (1484)
                      +++|||..++++.|.|.++++++++.+|++.+|+++.+.....     .....     ..   . ++   ..++.+....
T Consensus       607 ~k~rFI~~vi~~~I~I~~~~kdeIi~~L~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~  686 (760)
T d1bjta_         607 FQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVIN  686 (760)
T ss_dssp             HHHHHHHHHHTTSSCCTTCCHHHHHHHHHHTTCCEECTTCCEECSCC---------------------------------
T ss_pred             HHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             59999987541024300587899999999679942445554320230356676654310011111000001234555420


Q ss_pred             CCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             369894509998707332367999999999999999999999815905689999999999998985899999
Q 000459         1120 VNGVQSIDYDYLLSMAIGTLTLEKVQGLLADRDKLNEEVDDLRKATPESLWVKDLDALDMQLDELDKSDARA 1191 (1484)
Q Consensus      1120 ~~~lt~~qydyLL~M~L~~LT~eei~kL~~E~~el~~ei~~L~~~t~~dLW~~DLd~l~~el~~~~~~~~~~ 1191 (1484)
                      .+..+..||+|||+||||+||.+++++|++|++++++|++.|+++++++||++||++|+++|+++.+++.+.
T Consensus       687 ~~~~~~~~ydYLL~MrL~~LT~eei~kL~~E~~~l~~Ei~~L~~~t~~~lW~~DL~~l~~~y~k~~~~~~e~  758 (760)
T d1bjta_         687 GPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA  758 (760)
T ss_dssp             --CTTTCBSHHHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             100135678899858688877999999999999999999999778999999999999999999999976543
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure