Citrus Sinensis ID: 000916
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1225 | 2.2.26 [Sep-21-2011] | |||||||
| Q9H6S0 | 1430 | Probable ATP-dependent RN | yes | no | 0.84 | 0.719 | 0.342 | 0.0 | |
| B2RR83 | 1445 | Probable ATP-dependent RN | yes | no | 0.847 | 0.718 | 0.339 | 1e-180 | |
| Q8VHK9 | 1001 | Probable ATP-dependent RN | no | no | 0.373 | 0.456 | 0.434 | 1e-103 | |
| Q9H2U1 | 1008 | Probable ATP-dependent RN | no | no | 0.366 | 0.445 | 0.442 | 1e-103 | |
| Q6P158 | 1386 | Putative ATP-dependent RN | no | no | 0.399 | 0.352 | 0.344 | 3e-79 | |
| Q6P5D3 | 1388 | Putative ATP-dependent RN | no | no | 0.391 | 0.345 | 0.336 | 7e-77 | |
| Q5ZI74 | 1231 | Putative ATP-dependent RN | no | no | 0.374 | 0.372 | 0.351 | 1e-72 | |
| Q7Z478 | 1369 | ATP-dependent RNA helicas | no | no | 0.36 | 0.322 | 0.377 | 3e-72 | |
| A3KMI0 | 1362 | ATP-dependent RNA helicas | N/A | no | 0.363 | 0.326 | 0.370 | 4e-71 | |
| Q6PGC1 | 1365 | ATP-dependent RNA helicas | no | no | 0.355 | 0.318 | 0.369 | 1e-69 |
| >sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/1178 (34%), Positives = 620/1178 (52%), Gaps = 149/1178 (12%)
Query: 24 VAEATRIRISQILDGFLASKDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRV 83
+ E +I ++ L+ F F ++L++ ERA +H + + +G+ SKS G+G R +
Sbjct: 41 IDEEVKIAVNIALERFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYL 100
Query: 84 SVCKSKKRVETDKGKEILPSLTFSEGSKLVLQDLFTHYPPDDGEPGEKLDANQSRKSDKT 143
+V K+ + + + + + +K ++ L +P + E E L +
Sbjct: 101 TV----KKKDGSETAHAMMTCNLTHNTKHAVRSLIQRFPVTNKERTELLPKTE------- 149
Query: 144 RGKRVDIFCKPK-MSKAEIAMKVESLTSRIEKDANLRQIVEERSKLPISSFKDVITSTVD 202
RG + + + MSK + ++ + +I + R LP+ ++ I +
Sbjct: 150 RGNVFAVEAENREMSKT--SGRLNNGIPQIPVKRGESEFDSFRQSLPVFEKQEEIVKIIK 207
Query: 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGEN 262
N+VVLI GETG GKTTQ+PQFLL+ + G C+I CTQPRR++A +VAER++ ER E
Sbjct: 208 ENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRIFCTQPRRLAAIAVAERVAAERRER 267
Query: 263 IGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHII 322
IG IGY+IRLES+ + + FCTNGVLLR L++ +S +TH+I
Sbjct: 268 IGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMA-------------GDSTLSTVTHVI 314
Query: 323 VDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYP 382
VDE+HERDR+SDF+L +RD+L +P L+LIL SA LD + F +YFG CPVI + G +
Sbjct: 315 VDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPFE 374
Query: 383 VKSFYLEDVL--------SILK-------------------SAESNHLDSAS------LI 409
VK +LED+L +LK SA+ N S L
Sbjct: 375 VKEMFLEDILRTTGYTNKEMLKYKKEKQQEEKQQTTLTEWYSAQENSFKPESQRQRTVLN 434
Query: 410 VPNED-----------PELTEENKSTL--------DEAISLAWSNDEFDMLLELVSLEGS 450
V +E +LTE++ + L D +S W + + D ++ L +
Sbjct: 435 VTDEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDIDAFAQVFHLILT 494
Query: 451 PNV-YNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPE 509
NV +Y+H+ T T LMV AG+G V L+S+GA+ KA +G AL + Q E
Sbjct: 495 ENVSVDYRHSETSATALMVAAGRGFASQVEQLISMGANVHSKASNGWMALDWAKHFGQTE 554
Query: 510 VAQIIKKH-----MENALSDSMKQ-----------QLLDKYLATVNPELIDLVLIEQLLR 553
+ +++ + N S+ Q +LL Y + + E +DL LI LL
Sbjct: 555 IVDLLESYSATLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLY 614
Query: 554 KICMDSEDGAILVFLPGWEDINKTRDRLLANP--FFRDTSKFVIIPLHSMVPSVQQKKVF 611
IC + GA+L+FLPG+++I RDR+L + F T ++ + LHS + + QKKV
Sbjct: 615 NICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADSTHRYQVFMLHSNMQTSDQKKVL 674
Query: 612 KRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAK 671
K PP G RKIILSTNIAET+IT++DVV+VIDSG++KEKS+D N V+ L+ W+SKASA
Sbjct: 675 KNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAI 734
Query: 672 QRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP-NCNIEDFL 730
QR GRAGRC+ GIC+ L+S+LR ++ +FQ PE+ R+P++ELCL KLL P NC I DFL
Sbjct: 735 QRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPVNCPIADFL 794
Query: 731 QKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCL 790
K +PP ++ +RNA+ +L+ I A+ E +TELG L L V P + KM+ A+++ CL
Sbjct: 795 MKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCL 854
Query: 791 DPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQ 850
DP LT+AC YRDPF LP ++K+ A + + G SD +A++ AF+ W+ A+
Sbjct: 855 DPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTA--GAFSDHMALLRAFQAWQKARS 912
Query: 851 RGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPE----DVSSCSHNARVPGIIH 906
G E FC + F+S M +++GMR QL +L +GF+ D+ + N+ ++
Sbjct: 913 DGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVK 972
Query: 907 AVLMAGLYPMVARLRPPHKNGRRFVETA-GGAKVRLHPHSLNFKLSFKK----------- 954
A L+AG+YP + H + V T KVR HP S+ + +KK
Sbjct: 973 AALVAGMYPNLV-----HVDRENLVLTGPKEKKVRFHPASVLSQPQYKKIPPANGQAAAI 1027
Query: 955 ----TDDCPLMVYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPAPDNEDDD-EDDD 1009
TD ++YDE+TR ++R C+ V P+ +L+ +A E D
Sbjct: 1028 KALPTD---WLIYDEMTRAHRIANIRCCSAVTPVTILVFCGPARLASNALQEPSSFRVDG 1084
Query: 1010 MSDDDADENESDEDCMEIDDKTSGQHGENVMSSPDKSVTVVVDRWLYFGSTALDIAQIYC 1069
+ +D +D E++DKT+ + +D WL+F + +
Sbjct: 1085 IPNDSSDS--------EMEDKTTANLA-----------ALKLDEWLHFTLEPEAASLLLQ 1125
Query: 1070 LRERLSVAILFKVTHPQKALPPVLEASMYAMASILSYD 1107
LR++ L ++ P K V EA++ A+ ++LS +
Sbjct: 1126 LRQKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTE 1163
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Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8VHK9|DHX36_MOUSE Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5ZI74|DHX30_CHICK Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2 | Back alignment and function description |
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| >sp|A3KMI0|DHX29_XENLA ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1225 | ||||||
| 224085415 | 1195 | predicted protein [Populus trichocarpa] | 0.969 | 0.994 | 0.720 | 0.0 | |
| 255558742 | 1229 | ATP-dependent RNA helicase, putative [Ri | 0.991 | 0.988 | 0.704 | 0.0 | |
| 359485181 | 1231 | PREDICTED: probable ATP-dependent RNA he | 0.987 | 0.982 | 0.720 | 0.0 | |
| 302143511 | 1190 | unnamed protein product [Vitis vinifera] | 0.956 | 0.984 | 0.707 | 0.0 | |
| 356499332 | 1162 | PREDICTED: probable ATP-dependent RNA he | 0.941 | 0.992 | 0.675 | 0.0 | |
| 449460086 | 1230 | PREDICTED: probable ATP-dependent RNA he | 0.957 | 0.953 | 0.648 | 0.0 | |
| 449502177 | 1286 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.901 | 0.858 | 0.685 | 0.0 | |
| 356553621 | 1164 | PREDICTED: probable ATP-dependent RNA he | 0.925 | 0.974 | 0.679 | 0.0 | |
| 115440165 | 1223 | Os01g0767700 [Oryza sativa Japonica Grou | 0.908 | 0.910 | 0.645 | 0.0 | |
| 357131041 | 1272 | PREDICTED: probable ATP-dependent RNA he | 0.924 | 0.890 | 0.622 | 0.0 |
| >gi|224085415|ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|222857018|gb|EEE94565.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1776 bits (4600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1226 (72%), Positives = 1015/1226 (82%), Gaps = 38/1226 (3%)
Query: 1 MGKKKQKKAEQQQQKQQQQQSPTVAEATRIRISQILDGFLASKDEVYTFDANLSNRERAV 60
MGKK Q+KA QQQ+P VAEAT IRIS+IL+ F A+ D+VYTF+ANLSN +RAV
Sbjct: 1 MGKKNQRKA-------AQQQNPRVAEATLIRISKILERFRAAPDQVYTFEANLSNYDRAV 53
Query: 61 VHEVCKKMGMTSKSSGRGKQRRVSVCKSKKRVETDKGKEILPSLTFSEGSKLVLQDLFTH 120
VHEVCKKMGM SKSSGRG QRRVSV K+ K+++ KGKE L LTFS SK+VL +LF++
Sbjct: 54 VHEVCKKMGMKSKSSGRGGQRRVSVYKNTKKLDDVKGKENLTHLTFSGESKMVLGELFSN 113
Query: 121 YPPDDGEPGEKLDANQSRKSDKTRGKRVDIFCKPKMSKAEIAMKVESLTSRIEKDANLRQ 180
YPP++G G +L+ S + KTR K+ DIF KP KAEIA KVES SRIEKD L+Q
Sbjct: 114 YPPEEGGFGAELEGKHSGTAGKTREKKDDIFSKPSRKKAEIAKKVESFASRIEKDVKLKQ 173
Query: 181 IVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVC 240
IVE RSKLPI+SF DVITST++S+QVVLISGETGCGKTTQVPQFLL+H+W KGE CKIVC
Sbjct: 174 IVEGRSKLPIASFMDVITSTIESHQVVLISGETGCGKTTQVPQFLLDHMWGKGEACKIVC 233
Query: 241 TQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGV 300
TQPRRISA SV+ERIS ERGEN+GD++GYKIRLESKGGKHSSIVFCTNGVLLR+LVS+G+
Sbjct: 234 TQPRRISAISVSERISYERGENVGDSVGYKIRLESKGGKHSSIVFCTNGVLLRILVSKGI 293
Query: 301 SRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLD 360
+ + +N AK++ DEIHERDR+SDFMLAIIRD+LPS+ HLRLILMSATLD
Sbjct: 294 TGSQNEANTAAKEN---------DEIHERDRFSDFMLAIIRDILPSHSHLRLILMSATLD 344
Query: 361 ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEE 420
A+RFSQYFGGCP+I+VPGFTYPVK+F+LEDVLSIL S + NHLDSA V +E ELTEE
Sbjct: 345 AERFSQYFGGCPIIRVPGFTYPVKAFHLEDVLSILNSRDDNHLDSAMPNVLDEGHELTEE 404
Query: 421 NKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCM 480
+K+ LDEAI+LAWSNDEFD LL+LVS EG+P VY+YQH+++GLTPLMV AGKGRVGDVCM
Sbjct: 405 DKAALDEAINLAWSNDEFDSLLDLVSSEGTPKVYDYQHSVSGLTPLMVFAGKGRVGDVCM 464
Query: 481 LLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSM-KQQLLDKYLATVN 539
LLSLGA+C L++K G TAL+ E+ENQ E A++I+KH +NAL+DS +QQLLDKY+AT+N
Sbjct: 465 LLSLGANCNLQSKCGLTALKWAERENQEEAAEVIRKHAQNALADSSEQQQLLDKYMATIN 524
Query: 540 PELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLH 599
PELID+VLIEQL++KIC+DS+DGAILVFLPGW+DIN+TR+RLLANPFF+D SKF+II LH
Sbjct: 525 PELIDVVLIEQLIKKICVDSKDGAILVFLPGWDDINRTRERLLANPFFKDGSKFIIISLH 584
Query: 600 SMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVST 659
SMVPSV+QKKVFKRPP GCRKIILSTNI+E+AITIDDVVYVIDSGRMKEKSYDPYNNVST
Sbjct: 585 SMVPSVEQKKVFKRPPQGCRKIILSTNISESAITIDDVVYVIDSGRMKEKSYDPYNNVST 644
Query: 660 LQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKL 719
LQSSWVSKASAKQR GRAGRCQ GICYHLYS+LR +SLPDFQVPEIKR+PIEELCLQVKL
Sbjct: 645 LQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRESSLPDFQVPEIKRMPIEELCLQVKL 704
Query: 720 LDPNCNIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSK 779
LDP+C IE FLQKTLDPPV TIRNA+ VL DIGALS+DE +TELGEK+GCL VHPL SK
Sbjct: 705 LDPHCKIEAFLQKTLDPPVPETIRNAVAVLLDIGALSVDETLTELGEKIGCLPVHPLTSK 764
Query: 780 MLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVI 839
M+FFAILM+CLDPALTLACASDYRDPFTLP+ PNEKKRA AAKFELASLYGG SDQLAV+
Sbjct: 765 MIFFAILMNCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKFELASLYGGHSDQLAVL 824
Query: 840 AAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSCSHNA 899
AAFECW NAK RGQEA FCSQYF+SS MNML MRKQLQ ELI+ GFIPE+VSSC+ NA
Sbjct: 825 AAFECWNNAKNRGQEASFCSQYFISSSTMNMLQAMRKQLQRELIRKGFIPENVSSCNTNA 884
Query: 900 RVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCP 959
VPGI+HAVL+AGLYPMV R PP KNG+R VET GAKVRLHP SLNFKLSF K++D P
Sbjct: 885 HVPGIVHAVLVAGLYPMVGRFLPP-KNGKRVVETTSGAKVRLHPQSLNFKLSFWKSNDYP 943
Query: 960 LMVYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPAPDNEDDDEDDDMSDDDADENE 1019
L++YDEITRGDGGMH+RNCTV+GPLPLLLLATEI VAPA ++++DDE+DD D AD E
Sbjct: 944 LVIYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPAENDDEDDEEDDDDYDSADGAE 1003
Query: 1020 SDEDCMEIDDKTSGQHGENVMSSPDKSVTVVVDRWLYFGSTALDIAQIYCLRERLSVAIL 1079
SDED MEI K Q GE +MSSPD SV VVVDRWLYFG+TALD+AQIYCLRE+LS AIL
Sbjct: 1004 SDEDGMEIHGKLGTQQGERIMSSPDNSVMVVVDRWLYFGATALDVAQIYCLREQLSAAIL 1063
Query: 1080 FKVTHPQKALPPVLEASMYAMASILSYDGFSGISLPAESVESLTSMIQATEIDKCPAARN 1139
FKVTHP K LPP L A Y A ILS DG SGISLP ESVESLTSM+ ATEID+ + R
Sbjct: 1064 FKVTHPHKELPPALAAYTYTTACILSNDGLSGISLPGESVESLTSMVHATEIDESCSGR- 1122
Query: 1140 RGTGQNPSNFLMSLMSPNTRQYFPLRDHKSRIPAHKGSTKGNQLSTQVAQPPLFHGSPVV 1199
RG QNP++FL SL + NT+Q P R H +R P Q P GS
Sbjct: 1123 RGISQNPNSFLSSLKN-NTQQTAP-RYHNARSP---------------NQRPTLQGS--T 1163
Query: 1200 GSGSGTHIPPGPRGDSFKRPRGNWSK 1225
+G P GPRGDS+KR RGN ++
Sbjct: 1164 SAGHSMQGPSGPRGDSYKRQRGNATR 1189
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558742|ref|XP_002520395.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223540442|gb|EEF42011.1| ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359485181|ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|302143511|emb|CBI22072.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356499332|ref|XP_003518495.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449460086|ref|XP_004147777.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449502177|ref|XP_004161565.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX36-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356553621|ref|XP_003545153.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|115440165|ref|NP_001044362.1| Os01g0767700 [Oryza sativa Japonica Group] gi|53792445|dbj|BAD53353.1| putative DEIH-box RNA/DNA helicase [Oryza sativa Japonica Group] gi|53793557|dbj|BAD53327.1| putative DEIH-box RNA/DNA helicase [Oryza sativa Japonica Group] gi|113533893|dbj|BAF06276.1| Os01g0767700 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
| >gi|357131041|ref|XP_003567152.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1225 | ||||||
| TAIR|locus:2052841 | 1299 | HVT1 "helicase in vascular tis | 0.885 | 0.835 | 0.646 | 0.0 | |
| TAIR|locus:2009200 | 1576 | NIH "nuclear DEIH-boxhelicase" | 0.820 | 0.637 | 0.594 | 0.0 | |
| UNIPROTKB|Q9H6S0 | 1430 | YTHDC2 "Probable ATP-dependent | 0.460 | 0.394 | 0.365 | 9.8e-173 | |
| UNIPROTKB|F1MNU7 | 1429 | YTHDC2 "Uncharacterized protei | 0.459 | 0.393 | 0.368 | 1.3e-172 | |
| MGI|MGI:2448561 | 1445 | Ythdc2 "YTH domain containing | 0.542 | 0.459 | 0.348 | 5.8e-172 | |
| UNIPROTKB|F1NS70 | 1339 | YTHDC2 "Uncharacterized protei | 0.372 | 0.340 | 0.421 | 1e-171 | |
| UNIPROTKB|Q05B79 | 1010 | DHX36 "Uncharacterized protein | 0.364 | 0.441 | 0.443 | 3.3e-153 | |
| MGI|MGI:1919412 | 1001 | Dhx36 "DEAH (Asp-Glu-Ala-His) | 0.366 | 0.448 | 0.438 | 1.1e-151 | |
| UNIPROTKB|F6V8H1 | 1122 | DHX36 "Uncharacterized protein | 0.364 | 0.397 | 0.434 | 1.3e-151 | |
| RGD|1308767 | 1000 | Dhx36 "DEAH (Asp-Glu-Ala-His) | 0.366 | 0.449 | 0.436 | 2.9e-151 |
| TAIR|locus:2052841 HVT1 "helicase in vascular tissue and tapetum" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3632 (1283.6 bits), Expect = 0., P = 0.
Identities = 721/1115 (64%), Positives = 868/1115 (77%)
Query: 22 PTVAEATRIRISQILDGFLASKDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQR 81
PT EATRI +++++ F AS +EVYTF+ NLSN ER V+H++C+KMG+ SKSSGRG+QR
Sbjct: 15 PTSVEATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRKMGIQSKSSGRGEQR 74
Query: 82 RVSVCKSK-----KRVETDKG-KEILPSLTFSEGSKLVLQDLFTHYPPDDGEPGEKLDAN 135
R+S+ KS+ K +K KE L ++F G+ ++LQ+LFTHYPP DG+
Sbjct: 75 RLSIFKSRHKNGNKNEANEKSNKEKLKCVSFPPGADVILQELFTHYPPCDGDTAATSFTK 134
Query: 136 QSRKSDKTRGKRVDIFCKPKMSKAEIAMKVESLTSRIEKDANLRQIVEERSKLPISSFKD 195
S K + D F KP++S EI KV SL+SR++KD L++I + RSKLPI+SFKD
Sbjct: 135 YSGNKGKQGQWKDDFFRKPQISSEEILEKVASLSSRLKKDKALKEITKLRSKLPITSFKD 194
Query: 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS-KGETCKIVCTQPRRISATSVAER 254
ITS V+SNQV+LISGETGCGKTTQVPQ+LL+H+WS K ETCKIVCTQPRRISA SV+ER
Sbjct: 195 AITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCKIVCTQPRRISAMSVSER 254
Query: 255 ISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDD 314
IS ERGE+IG+NIGYK+RL+SKGG+HSS+VFCTNG+LLR+LV +G +
Sbjct: 255 ISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKG-----------SVSS 303
Query: 315 VSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVI 374
VS +THIIVDEIHERD YSDFMLAIIRD+LPS PHLRLILMSATLDA+RFS YFGGCPV+
Sbjct: 304 VSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGCPVV 363
Query: 375 QVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWS 434
+VPGFTYPV++ YLEDVLSILKS NHL S +L + + +LT+E+K LDEAI LAW+
Sbjct: 364 RVPGFTYPVRTLYLEDVLSILKSGGDNHLSSTNLSISDHKLDLTDEDKLALDEAIILAWT 423
Query: 435 NDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKD 494
NDEFD LL+LVS GS +YNYQH T LTPLMV AGKGR+ DVCMLLS GAD LK+KD
Sbjct: 424 NDEFDALLDLVSSRGSHEIYNYQHQSTWLTPLMVFAGKGRISDVCMLLSFGADWSLKSKD 483
Query: 495 GRTALQLGEQENQPEVAQIIKKHMENALSDSMK-QQLLDKYLATVNPELIDLVLIEQLLR 553
G TAL+L E ENQ E AQII++H +N+ S+S + QQLLDKY+AT+NPE +D+ LI+QL+R
Sbjct: 484 GMTALELAEAENQLEAAQIIREHADNSQSNSQQGQQLLDKYMATINPEQVDVSLIQQLMR 543
Query: 554 KICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKR 613
KIC DSEDGAILVFLPGW+DINKTR RLL NPFF D++KF II LHSMVP+ +QKKVF R
Sbjct: 544 KICGDSEDGAILVFLPGWDDINKTRQRLLENPFFADSAKFDIICLHSMVPAGEQKKVFNR 603
Query: 614 PPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQR 673
PPPGCRKI+L+TNIAE+A+TIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKA+AKQR
Sbjct: 604 PPPGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQR 663
Query: 674 AGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKT 733
GRAGRCQ GICYHLYS+LRAAS+PDF+VPEIKR+P+EELCLQVK+LDPNC DFLQK
Sbjct: 664 QGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTNDFLQKL 723
Query: 734 LDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPA 793
LDPPV +I NA+ +LQDIGAL+ E++TELGEK G L VHPL+SKMLFFA+L++CLDPA
Sbjct: 724 LDPPVDQSIANALSILQDIGALTPQEELTELGEKFGHLPVHPLISKMLFFAVLVNCLDPA 783
Query: 794 LTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRGQ 853
LTLACA+DY++PFT+P+SP E+++A AAK ELASL GG SD LAV+AAFECWKNAK RG
Sbjct: 784 LTLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKNAKGRGL 843
Query: 854 EAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSCSHNARVPGIIHAVLMAGL 913
A FCSQYFVS M ML MR QL++EL ++G IP D+SSCS N+R PGI+ AVL GL
Sbjct: 844 SAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAVLAVGL 903
Query: 914 YPMVARLRPPHKNGRR-FVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGG 972
YPMV RL P N RR VETA GAKVR+H S NF LS KK D+ L+V+DEITRGDGG
Sbjct: 904 YPMVGRLCPAFGNNRRTIVETASGAKVRVHSLSNNFNLSSKKYDES-LLVFDEITRGDGG 962
Query: 973 MHVRNCTVVGPLPLLLLATEIAVAPAPXXXXXXXXX--------XXXXXXXXXXXXXXXC 1024
MH+RNCTV LPLLL++TEIAVAP
Sbjct: 963 MHIRNCTVARDLPLLLISTEIAVAPTGSSDSDDSNEEEEDDEEVAANTNEEVAANTNEEG 1022
Query: 1025 MEIDDKTSGQHGENVMSSPDKSVTVVVDRWLYFGSTALDIAQIYCLRERLSVAILFKVTH 1084
M+I K + G +MSSP+ SV +VVDRWL F +TAL++AQ+Y LRERL +ILFKVTH
Sbjct: 1023 MDIH-KEESRRGAKMMSSPENSVKLVVDRWLPFRTTALEVAQMYILRERLMASILFKVTH 1081
Query: 1085 PQKALPPVLEASMYAMASILSYDGFSGISLPAESV 1119
P++ LPP L ASM+A+A ILSYDG +G+S P ES+
Sbjct: 1082 PREHLPPHLGASMHAIAGILSYDGHAGLSCPPESM 1116
|
|
| TAIR|locus:2009200 NIH "nuclear DEIH-boxhelicase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9H6S0 YTHDC2 "Probable ATP-dependent RNA helicase YTHDC2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MNU7 YTHDC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2448561 Ythdc2 "YTH domain containing 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NS70 YTHDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q05B79 DHX36 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1919412 Dhx36 "DEAH (Asp-Glu-Ala-His) box polypeptide 36" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6V8H1 DHX36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| RGD|1308767 Dhx36 "DEAH (Asp-Glu-Ala-His) box polypeptide 36" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | estExt_fgenesh4_pm.C_LG_V0477 | hypothetical protein (1196 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1225 | |||
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 3e-75 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 6e-67 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 3e-43 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 3e-39 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 2e-38 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 3e-35 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 1e-33 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 5e-30 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 9e-30 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 1e-24 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 4e-23 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 5e-22 | |
| cd06007 | 59 | cd06007, R3H_DEXH_helicase, R3H domain of a group | 3e-21 | |
| pfam07717 | 109 | pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch | 1e-16 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 1e-16 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 8e-13 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 9e-13 | |
| PHA02653 | 675 | PHA02653, PHA02653, RNA helicase NPH-II; Provision | 1e-12 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 7e-11 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-09 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 2e-09 | |
| PHA02653 | 675 | PHA02653, PHA02653, RNA helicase NPH-II; Provision | 1e-08 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 1e-08 | |
| smart00393 | 79 | smart00393, R3H, Putative single-stranded nucleic | 3e-08 | |
| pfam01424 | 55 | pfam01424, R3H, R3H domain | 3e-08 | |
| cd02325 | 59 | cd02325, R3H, R3H domain | 4e-08 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 2e-06 | |
| PTZ00322 | 664 | PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct | 7e-06 | |
| pfam13857 | 56 | pfam13857, Ank_5, Ankyrin repeats (many copies) | 2e-05 | |
| cd02640 | 60 | cd02640, R3H_NRF, R3H domain of the NF-kappaB-repr | 3e-05 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 7e-05 | |
| cd02646 | 58 | cd02646, R3H_G-patch, R3H domain of a group of fun | 2e-04 | |
| cd02641 | 60 | cd02641, R3H_Smubp-2_like, R3H domain of Smubp-2_l | 5e-04 | |
| cd02639 | 60 | cd02639, R3H_RRM, R3H domain of mainly fungal prot | 0.001 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 0.004 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 3e-75
Identities = 131/443 (29%), Positives = 202/443 (45%), Gaps = 37/443 (8%)
Query: 548 IEQLLRKIC---MDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPS 604
+ + + G+ILVFLPG +I +T + L D I+PL+ + +
Sbjct: 243 LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDL---EILPLYGALSA 299
Query: 605 VQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSW 664
+Q +VF+ P G RK++L+TNIAET++TI + YVIDSG KEK YDP ++ L++
Sbjct: 300 EEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEP 359
Query: 665 VSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNC 724
+SKASA QRAGRAGR GICY LYS+ + P+F +PEI R + L LQ+K L
Sbjct: 360 ISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQ 419
Query: 725 NIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFA 784
+I F LDPP I+ A+ +LQ++GAL K+T LG+++ L + P +++ML A
Sbjct: 420 DIAPF--PFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTA 477
Query: 785 ILMDCLDPALTLACA---SDYRDPFTLPISPNEKKRATAAK--FELASLYGGQSDQLAVI 839
CL A T+A D F+ + +++ A + + + D L ++
Sbjct: 478 PEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLL 537
Query: 840 AAFECW---KNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIP---EDVS 893
AF K AK A C + ++ + L + ++
Sbjct: 538 EAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEID 597
Query: 894 SCSHNARVPGIIHA----------VLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHP 943
A+ L AG +A+L +GR +V + V HP
Sbjct: 598 EDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQL---QLDGRPYVTLSDNTPVFAHP 654
Query: 944 HSLNFKLSFKKTDDCPLMVYDEI 966
S+ L + Y E
Sbjct: 655 SSVRLGL-----VLLEWIKYAEF 672
|
Length = 845 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|100077 cd06007, R3H_DEXH_helicase, R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases | Back alignment and domain information |
|---|
| >gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold | Back alignment and domain information |
|---|
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
| >gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >gnl|CDD|214647 smart00393, R3H, Putative single-stranded nucleic acids-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|216493 pfam01424, R3H, R3H domain | Back alignment and domain information |
|---|
| >gnl|CDD|100064 cd02325, R3H, R3H domain | Back alignment and domain information |
|---|
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
| >gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
| >gnl|CDD|100069 cd02640, R3H_NRF, R3H domain of the NF-kappaB-repression factor (NRF) | Back alignment and domain information |
|---|
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
| >gnl|CDD|100075 cd02646, R3H_G-patch, R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain | Back alignment and domain information |
|---|
| >gnl|CDD|100070 cd02641, R3H_Smubp-2_like, R3H domain of Smubp-2_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|100068 cd02639, R3H_RRM, R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain | Back alignment and domain information |
|---|
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1225 | |||
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 100.0 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.98 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.98 | |
| PTZ00110 | 545 | helicase; Provisional | 99.98 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.98 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.97 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.97 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.97 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.97 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.97 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.97 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.96 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.96 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.95 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.95 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.95 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.94 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.94 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.93 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.93 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.92 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.92 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.92 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.92 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.92 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.92 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.92 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.92 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.91 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.91 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.9 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.9 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.9 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.9 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.89 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.89 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.89 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.89 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.88 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.87 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.87 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.86 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.84 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.83 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.83 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.83 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.82 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.81 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.79 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.78 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.78 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.78 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.77 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.76 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.76 | |
| PF07717 | 114 | OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi | 99.76 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 99.75 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.74 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.74 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.72 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.71 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.7 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.69 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.69 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.68 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.67 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.67 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.66 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.65 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.64 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.62 | |
| smart00847 | 92 | HA2 Helicase associated domain (HA2) Add an annota | 99.61 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.6 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.6 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.56 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.53 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.53 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.51 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.48 | |
| cd06007 | 59 | R3H_DEXH_helicase R3H domain of a group of protein | 99.47 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.47 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.46 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.46 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.41 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.4 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.4 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.38 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.34 | |
| cd02640 | 60 | R3H_NRF R3H domain of the NF-kappaB-repression fac | 99.34 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.33 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.32 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.23 | |
| cd02641 | 60 | R3H_Smubp-2_like R3H domain of Smubp-2_like protei | 99.21 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.2 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.17 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.16 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.13 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.13 | |
| cd02646 | 58 | R3H_G-patch R3H domain of a group of fungal and pl | 99.06 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.0 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.98 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 98.97 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.96 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.93 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.92 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.9 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 98.89 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.89 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.85 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.83 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.81 | |
| cd02639 | 60 | R3H_RRM R3H domain of mainly fungal proteins which | 98.76 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 98.75 | |
| PF01424 | 63 | R3H: R3H domain; InterPro: IPR001374 The R3H motif | 98.64 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 98.62 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 98.53 | |
| smart00393 | 79 | R3H Putative single-stranded nucleic acids-binding | 98.52 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.51 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.42 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.41 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.35 | |
| cd06006 | 59 | R3H_unknown_2 R3H domain of a group of fungal prot | 98.34 | |
| cd02325 | 59 | R3H R3H domain. The name of the R3H domain comes f | 98.33 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.33 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.26 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.19 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.15 | |
| cd02642 | 63 | R3H_encore_like R3H domain of encore-like and DIP1 | 98.14 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.11 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.07 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.81 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.81 | |
| cd02636 | 61 | R3H_sperm-antigen R3H domain of a group of metazoa | 97.81 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 97.8 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.76 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.72 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.71 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.7 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 97.67 | |
| cd02643 | 74 | R3H_NF-X1 R3H domain of the X1 box binding protein | 97.65 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 97.63 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 97.63 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.62 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 97.62 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 97.6 | |
| cd02644 | 67 | R3H_jag R3H domain found in proteins homologous to | 97.55 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.48 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.41 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.38 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.36 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.34 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.33 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.28 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 97.27 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.26 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 97.25 | |
| cd02645 | 60 | R3H_AAA R3H domain of a group of proteins with unk | 97.24 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.18 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.03 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 97.03 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.96 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.96 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.95 | |
| PRK06526 | 254 | transposase; Provisional | 96.92 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 96.85 | |
| PF13173 | 128 | AAA_14: AAA domain | 96.84 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 96.67 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.64 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.61 | |
| cd02638 | 62 | R3H_unknown_1 R3H domain of a group of eukaryotic | 96.6 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.55 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 96.55 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.48 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 96.44 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.38 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 96.38 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.32 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 96.31 | |
| PRK08181 | 269 | transposase; Validated | 96.3 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.25 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 96.17 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.08 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.08 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.05 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 96.04 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 95.99 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 95.92 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 95.92 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 95.88 | |
| PRK08116 | 268 | hypothetical protein; Validated | 95.87 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 95.82 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 95.82 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 95.78 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 95.74 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 95.74 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 95.69 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 95.69 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 95.68 | |
| PHA02244 | 383 | ATPase-like protein | 95.68 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.67 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 95.55 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 95.43 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 95.42 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 95.37 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 95.36 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 95.28 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 95.25 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 95.18 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 95.13 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 95.09 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 95.08 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 95.07 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 94.95 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 94.95 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 94.92 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 94.92 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 94.91 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 94.9 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 94.78 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 94.78 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 94.73 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 94.73 | |
| PRK09087 | 226 | hypothetical protein; Validated | 94.62 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 94.6 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 94.4 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 94.38 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 94.34 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 94.29 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 94.27 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 94.19 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 94.15 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 94.11 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 94.08 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 94.04 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 94.03 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 94.01 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 94.0 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 94.0 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 93.96 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 93.94 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 93.9 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 93.86 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 93.79 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 93.78 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 93.75 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 93.69 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 93.66 | |
| PRK08727 | 233 | hypothetical protein; Validated | 93.64 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 93.58 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 93.56 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 93.51 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 93.45 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 93.4 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 93.29 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 93.28 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 93.25 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 93.22 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 93.21 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 93.19 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 93.15 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 93.09 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 92.95 | |
| PRK12377 | 248 | putative replication protein; Provisional | 92.94 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 92.92 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 92.92 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 92.82 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 92.82 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 92.73 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 92.71 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 92.65 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 92.59 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.58 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 92.52 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 92.47 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 92.45 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 92.39 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 92.39 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 92.37 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 92.2 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 92.17 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 92.16 | |
| PRK13695 | 174 | putative NTPase; Provisional | 92.13 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 92.05 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 92.03 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 91.95 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 91.9 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 91.9 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 91.85 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 91.85 | |
| COG1847 | 208 | Jag Predicted RNA-binding protein [General functio | 91.85 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 91.83 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 91.82 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 91.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 91.76 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 91.71 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 91.62 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 91.51 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 91.47 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 91.34 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 91.33 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 91.31 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 91.15 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 91.09 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 90.84 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 90.84 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 90.84 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 90.81 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 90.68 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 90.63 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 90.63 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 90.59 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 90.55 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 90.47 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 90.46 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 90.39 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 90.39 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 90.37 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 90.3 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 90.29 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 90.25 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 90.17 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 90.16 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 90.15 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 90.14 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 90.04 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 89.89 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 89.87 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 89.86 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 89.84 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 89.79 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 89.65 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 89.53 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 89.51 | |
| PHA00149 | 331 | DNA encapsidation protein | 89.49 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 89.47 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 89.41 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 89.38 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 89.34 | |
| PRK13764 | 602 | ATPase; Provisional | 89.29 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 89.24 | |
| PF05894 | 333 | Podovirus_Gp16: Podovirus DNA encapsidation protei | 89.17 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 89.15 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 89.13 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 89.1 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 89.0 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 88.96 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 88.94 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 88.91 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 88.86 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 88.82 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 88.77 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 88.76 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 88.74 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 88.68 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 88.66 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 88.38 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 88.35 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 88.29 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 88.28 | |
| cd02034 | 116 | CooC The accessory protein CooC, which contains a | 88.27 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 88.26 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 88.21 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 88.17 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 88.07 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 88.07 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 88.01 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 88.0 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 87.93 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 87.92 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 87.79 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 87.73 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 87.71 | |
| PRK07667 | 193 | uridine kinase; Provisional | 87.68 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 87.67 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 87.62 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 87.55 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 87.39 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 87.39 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 87.31 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 87.29 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 87.28 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 87.22 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 87.19 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 87.17 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 87.11 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 87.08 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 87.01 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 86.95 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 86.86 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 86.85 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 86.7 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 86.69 | |
| PF02367 | 123 | UPF0079: Uncharacterised P-loop hydrolase UPF0079; | 86.49 | |
| PRK10263 | 1355 | DNA translocase FtsK; Provisional | 86.46 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 86.42 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 86.26 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 86.24 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 86.15 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 86.14 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 86.09 | |
| KOG2373 | 514 | consensus Predicted mitochondrial DNA helicase twi | 86.06 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 86.04 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 86.04 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 85.97 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 85.96 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 85.63 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 85.54 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 85.51 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 85.38 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 85.33 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 85.31 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 85.24 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 85.23 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 85.18 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 85.17 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 85.14 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 85.03 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 84.97 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 84.96 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 84.88 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 84.86 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 84.85 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 84.67 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 84.59 | |
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 84.51 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 84.48 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 84.35 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 84.28 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 84.27 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 84.24 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 84.16 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 84.02 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 84.0 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 83.93 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 83.88 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 83.82 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 83.81 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 83.71 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 83.69 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_ | 83.68 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 83.52 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 83.45 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 83.42 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 83.35 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 83.23 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 83.19 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 83.18 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 83.1 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 82.94 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 82.83 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 82.75 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 82.74 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 82.73 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 82.54 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 82.43 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 82.21 | |
| cd01127 | 410 | TrwB Bacterial conjugation protein TrwB, ATP bindi | 82.21 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 82.16 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 82.14 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 82.08 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 81.93 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 81.84 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 81.78 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 81.54 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 81.51 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 81.5 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 81.49 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 81.33 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 81.21 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 81.2 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 81.16 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 81.03 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 81.01 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 80.97 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 80.97 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 80.91 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 80.9 |
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-168 Score=1540.78 Aligned_cols=849 Identities=41% Similarity=0.648 Sum_probs=707.8
Q ss_pred CCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEeccccccccccccccCCceecChhHHHHHHHHHhcCCCCCCCccccc
Q 000916 53 LSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCKSKKRVETDKGKEILPSLTFSEGSKLVLQDLFTHYPPDDGEPGEKL 132 (1225)
Q Consensus 53 ~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~p~~~~e~~~~~ 132 (1225)
+....+++ |.....+.+..++.+.-.++++.++.+....-.+. ................+..... +.....+.. .
T Consensus 60 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~ 134 (924)
T KOG0920|consen 60 LIQIARSS-STAKNLMKFHTVSKITEPSRLLDLSPKPMTLQAKL-KLKAEAENKAAALVCKLLESLK-LVDRNNENL--L 134 (924)
T ss_pred HHHHHHhh-hhhhhcccceeeeccCCCCceeeecccccchhhhh-eecccccchhHHHHHHHHHHhc-cCCCccccc--c
Confidence 44445555 66666667777888888888888876643211110 1111222222223333333332 222221111 0
Q ss_pred ccccccccccccCcccccccCCCCCHHHHHHHHHHHHhhhhhchhhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEcc
Q 000916 133 DANQSRKSDKTRGKRVDIFCKPKMSKAEIAMKVESLTSRIEKDANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGE 212 (1225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~Ge 212 (1225)
.... . +.+..+..+ .+. .......+..+++++..|.+||+|++|++||++|++||||+|+|+
T Consensus 135 ~~~~----~----~~d~~~~~~-----s~~-----~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGe 196 (924)
T KOG0920|consen 135 LPTT----G----QKDEPLLKK-----SIS-----RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGE 196 (924)
T ss_pred cccc----c----ccccccCcc-----hhh-----hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCC
Confidence 0000 0 111112111 111 233344678899999999999999999999999999999999999
Q ss_pred CCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEEEEccHHHH
Q 000916 213 TGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLL 292 (1225)
Q Consensus 213 TGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~f~T~GvLL 292 (1225)
|||||||||||||||+.+..+..|+|+|||||||+||+||+|||.|||+.+|.+||||||++++.+..|+|+|||+|+||
T Consensus 197 TGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLL 276 (924)
T KOG0920|consen 197 TGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLL 276 (924)
T ss_pred CCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHH
Confidence 99999999999999999887799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccccHHHHHhhhCCCC
Q 000916 293 RLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCP 372 (1225)
Q Consensus 293 r~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~p 372 (1225)
|.|+++ +.|.++|||||||||||++++||||.++|++|.++|+|||||||||+|++.|++||++||
T Consensus 277 r~L~~~--------------~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~p 342 (924)
T KOG0920|consen 277 RRLQSD--------------PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCP 342 (924)
T ss_pred HHhccC--------------cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCc
Confidence 999987 489999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCC
Q 000916 373 VIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPN 452 (1225)
Q Consensus 373 vi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (1225)
||+||||+|||++|||||+++.++|.....-.
T Consensus 343 vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~------------------------------------------------ 374 (924)
T KOG0920|consen 343 VITIPGRTFPVKEYFLEDILSKTGYVSEDDSA------------------------------------------------ 374 (924)
T ss_pred eEeecCCCcchHHHHHHHHHHHhccccccccc------------------------------------------------
Confidence 99999999999999999999998764321000
Q ss_pred cccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHH
Q 000916 453 VYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLD 532 (1225)
Q Consensus 453 ~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~ 532 (1225)
|.....+ ++..
T Consensus 375 ---~~~~~~~--~~~~---------------------------------------------------------------- 385 (924)
T KOG0920|consen 375 ---RSGPERS--QLRL---------------------------------------------------------------- 385 (924)
T ss_pred ---ccccccC--cccc----------------------------------------------------------------
Confidence 0000000 0000
Q ss_pred hhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhc
Q 000916 533 KYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFK 612 (1225)
Q Consensus 533 ~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~ 612 (1225)
.++..+.++ ||++||++++.+|+....+|+||||||||+||..+.+.|..+..+.+..++.|+||||.|+.++|+.||.
T Consensus 386 ~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~ 464 (924)
T KOG0920|consen 386 ARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFK 464 (924)
T ss_pred ccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcC
Confidence 001122233 9999999999999999899999999999999999999999887787778899999999999999999999
Q ss_pred CCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHH
Q 000916 613 RPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQL 692 (1225)
Q Consensus 613 ~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~ 692 (1225)
++|+|+||||+||||||||||||||+||||||++||++||+.+++++|..+|||||+|+||+|||||+++|+|||||++.
T Consensus 465 ~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 465 RPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRS 544 (924)
T ss_pred CCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC-CCCCcccccChhhHHHHHhhcCCCCChhhhhhhcCCCCcHHHHHHHHHHHHHcCCCCCCCcccccccccccc
Q 000916 693 RAASLPD-FQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCL 771 (1225)
Q Consensus 693 ~~~~m~~-~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ldPP~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~L 771 (1225)
+|+.|.+ |++|||+|+||+++||++|.|.. +++.+||+++++||+..+|.+|+..|+.+|||+.+++||+||++|+.|
T Consensus 545 ~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~-~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~l 623 (924)
T KOG0920|consen 545 RYEKLMLAYQLPEILRTPLEELCLHIKVLEQ-GSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASL 623 (924)
T ss_pred hhhhcccccCChHHHhChHHHhhheeeeccC-CCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhC
Confidence 9998888 99999999999999999999987 578899999999999999999999999999999999999999999999
Q ss_pred cCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhhc
Q 000916 772 SVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQR 851 (1225)
Q Consensus 772 Pvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~~~~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~~ 851 (1225)
|+||++|||+++|++|+|+||+++|||+|++++||+.|.++ ++.+.+++..|+. +..||||++++||+.|+++...
T Consensus 624 Pvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~--~~~~~~~~~~~~~--~~~SD~la~~~ay~~w~~~~~~ 699 (924)
T KOG0920|consen 624 PVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGK--REEADKAKKLLAL--DSISDHLAVVRAYAGWREILRS 699 (924)
T ss_pred CCccccchhheehhhccccchhhhHHHHhccCCCcccCCCc--hhHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999874 5566777777764 4579999999999999998877
Q ss_pred --CchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCC------CCCCCCCCCChHHHHHHHHhccCccceeecCC
Q 000916 852 --GQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPED------VSSCSHNARVPGIIHAVLMAGLYPMVARLRPP 923 (1225)
Q Consensus 852 --~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~------~~~~n~ns~~~~lika~L~aGlyPnVAr~~~~ 923 (1225)
....+||++||||..+|+++.++|.||.+.|.++||++.+ ...+|.|+.++++++++||||||||++++...
T Consensus 700 ~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~ 779 (924)
T KOG0920|consen 700 GPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRM 779 (924)
T ss_pred cchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecc
Confidence 4567999999999999999999999999999999999863 34578899999999999999999999998741
Q ss_pred C-CCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccccCceEEeeccccChhhHHhhcccccccCCCCCC
Q 000916 924 H-KNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPAPDNE 1002 (1225)
Q Consensus 924 ~-~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~~k~~ir~~T~V~p~~LlLfgg~~~~~~~~~~~ 1002 (1225)
. +.....+.+.....|++||+|||+... .+..+|++|+|+++|++.+|+|++|+|++++++||||.+.....
T Consensus 780 ~~~~~~~~~~~~~~~~v~i~~~sv~~~~~---~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~~~~---- 852 (924)
T KOG0920|consen 780 EPKSKSVTFVTKADGRVIIHPSSVNEQST---GFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGISTVRM---- 852 (924)
T ss_pred cCCcCcceeecCCceeEEEecchhhcccc---ccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCceeecC----
Confidence 1 111122445555699999999998743 34567999999999965599999999999999999998753110
Q ss_pred CCCCCCCCCCCccccCCCccccccccccccCCCCCccccCCCCceEEEecCeEEeccChhhHHHHHHHHHHHHHHHHHHH
Q 000916 1003 DDDEDDDMSDDDADENESDEDCMEIDDKTSGQHGENVMSSPDKSVTVVVDRWLYFGSTALDIAQIYCLRERLSVAILFKV 1082 (1225)
Q Consensus 1003 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~vD~Wi~f~~~~~~~~~i~~lR~~l~~ll~~ki 1082 (1225)
.+ ++...+..|+|+.|.+++.++.++..||..++.+|.+++
T Consensus 853 ------------~~---------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~ 893 (924)
T KOG0920|consen 853 ------------KS---------------------------GSLALLLPDGWLRFKALPKTARLLKELRRELDSLLSKKI 893 (924)
T ss_pred ------------CC---------------------------CccceecCCceEEeecchhHHHHHHHHHHHHHHHHHHhc
Confidence 00 112345679999999999999999999999999999999
Q ss_pred hCCCCCCC---cchHHHHHHHHHHHccC
Q 000916 1083 THPQKALP---PVLEASMYAMASILSYD 1107 (1225)
Q Consensus 1083 ~~P~~~~~---~~~~~~~~ai~~lls~d 1107 (1225)
.+|...++ ..+......++.++...
T Consensus 894 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (924)
T KOG0920|consen 894 RSPCASLPDSSGKGSESPSLIANLLVGE 921 (924)
T ss_pred cCccccccccccccccchhhhhhhhhhh
Confidence 99997762 23455777777777654
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO) | Back alignment and domain information |
|---|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00847 HA2 Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF) | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00393 R3H Putative single-stranded nucleic acids-binding domain | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function | Back alignment and domain information |
|---|
| >cd02325 R3H R3H domain | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins | Back alignment and domain information |
|---|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >cd02636 R3H_sperm-antigen R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7 | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >cd02643 R3H_NF-X1 R3H domain of the X1 box binding protein (NF-X1) and related proteins | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
| >cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain | Back alignment and domain information |
|---|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
| >cd02638 R3H_unknown_1 R3H domain of a group of eukaryotic proteins with unknown function | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >COG1847 Jag Predicted RNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PHA00149 DNA encapsidation protein | Back alignment and domain information |
|---|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
| >PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses | Back alignment and domain information |
|---|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH) | Back alignment and domain information |
|---|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
| >PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
| >KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
| >cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain | Back alignment and domain information |
|---|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1225 | ||||
| 3llm_A | 235 | Crystal Structure Analysis Of A Rna Helicase Length | 3e-49 | ||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 2e-39 | ||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 2e-35 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 2e-39 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 2e-35 | ||
| 3i4u_A | 270 | Crystal Structure Analysis Of A Helicase Associated | 4e-07 | ||
| 1mj0_A | 166 | Sank E3_5: An Artificial Ankyrin Repeat Protein Len | 2e-04 | ||
| 4gmr_A | 169 | Crystal Structure Of Engineered Protein. Northeast | 4e-04 | ||
| 1n11_A | 437 | D34 Region Of Human Ankyrin-R And Linker Length = 4 | 5e-04 |
| >pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 | Back alignment and structure |
|
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
| >pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270 | Back alignment and structure |
| >pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166 | Back alignment and structure |
| >pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169 | Back alignment and structure |
| >pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 308 bits (790), Expect = 6e-97
Identities = 98/214 (45%), Positives = 138/214 (64%), Gaps = 19/214 (8%)
Query: 166 ESLTSRIEKDANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFL 225
L ++E+D +L+ I++ER LP+ F+ I + N VV+I G TGCGKTTQVPQF+
Sbjct: 38 NELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFI 97
Query: 226 LEHIWS--KGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGK-HSS 282
L+ + C IV TQPRRISA SVAER++ ERGE G + GY +R ES + H+S
Sbjct: 98 LDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHAS 157
Query: 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRD 342
I+FCT GVLLR L + + ++H+IVDEIHERD +DF+L ++RD
Sbjct: 158 IMFCTVGVLLRKLEA----------------GIRGISHVIVDEIHERDINTDFLLVVLRD 201
Query: 343 MLPSYPHLRLILMSATLDADRFSQYFGGCPVIQV 376
++ +YP +R++LMSAT+D F +YF CP+I+V
Sbjct: 202 VVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93 | Back alignment and structure |
|---|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136 | Back alignment and structure |
|---|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110 | Back alignment and structure |
|---|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110 | Back alignment and structure |
|---|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126 | Back alignment and structure |
|---|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123 | Back alignment and structure |
|---|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156 | Back alignment and structure |
|---|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136 | Back alignment and structure |
|---|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 | Back alignment and structure |
|---|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165 | Back alignment and structure |
|---|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192 | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1225 | ||||
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 2e-31 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 2e-22 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-19 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-15 | |
| d1msza_ | 62 | d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId | 4e-12 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 6e-12 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 8e-09 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 3e-07 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 4e-06 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 2e-04 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 6e-04 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 9e-08 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 8e-04 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 3e-07 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 1e-06 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 2e-06 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 3e-06 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 0.002 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 0.003 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 7e-06 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 3e-05 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 0.003 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 3e-05 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 9e-04 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 5e-05 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 1e-04 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 4e-04 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 9e-04 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 3e-04 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 5e-04 | |
| d1ixva_ | 229 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 0.001 | |
| d1ot8a_ | 209 | d.211.1.1 (A:) Neurogenic locus notch receptor dom | 0.001 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 0.001 |
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 123 bits (309), Expect = 2e-31
Identities = 33/228 (14%), Positives = 61/228 (26%), Gaps = 19/228 (8%)
Query: 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCR 619
+ FLP N L ++ L+ + + ++
Sbjct: 35 DKRPTAWFLPSIRAANVMAASLRKA-------GKSVVVLNRKTFEREYPTIKQK----KP 83
Query: 620 KIILSTNIAETAITIDDVVYVIDSGR-MKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAG 678
IL+T+IAE + V V+D K D V+ +S +SA QR GR G
Sbjct: 84 DFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIG 142
Query: 679 RCQAG-ICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFL-QKTLDP 736
R + YS + + + L +++ +
Sbjct: 143 RNPNRDGDSYYYS----EPTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPV 198
Query: 737 PVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFA 784
+ + L ++ + K F
Sbjct: 199 SPGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCFEG 246
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
| >d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 | Back information, alignment and structure |
|---|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209 | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1225 | |||
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 100.0 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 100.0 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.81 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.79 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.78 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.78 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.77 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.77 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.76 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.75 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.75 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.74 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.69 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.69 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.69 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.68 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.67 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.67 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.67 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.67 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.66 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.65 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.64 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.64 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.64 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.63 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.53 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.52 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.51 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.45 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.38 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.34 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.32 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.17 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.12 | |
| d1msza_ | 62 | SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.06 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.96 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.9 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.41 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.33 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.03 | |
| d1whra_ | 124 | R3H domain protein KIAA1002 {Human (Homo sapiens) | 98.03 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.99 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.96 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.94 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.86 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.81 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.77 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.76 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.55 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.49 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.48 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.92 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.75 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.74 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.54 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.39 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.36 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 95.87 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.86 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 95.52 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.49 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.24 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.52 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.49 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.22 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 94.1 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 94.01 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 93.94 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.93 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.88 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.69 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 93.62 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.54 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 93.53 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.3 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.23 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 92.95 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 92.78 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.75 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 92.61 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 92.6 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 92.5 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 92.36 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 92.01 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 92.01 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.86 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.84 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 91.83 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 91.47 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.32 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.06 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.95 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.73 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 90.62 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.44 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.43 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 90.35 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.33 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.1 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 90.04 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.0 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 89.86 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 89.84 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 89.72 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 89.57 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 89.54 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.53 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.42 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 89.4 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.37 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 89.37 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.34 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 89.3 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.28 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.1 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 89.03 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.94 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 88.92 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 88.92 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.87 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 88.84 | |
| d1ug8a_ | 87 | Poly(A)-specific ribonuclease PARN {Mouse (Mus mus | 88.78 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 88.76 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 88.74 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 88.56 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.48 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 88.44 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.08 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 88.01 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 87.9 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 87.72 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.67 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 87.52 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 87.48 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 87.46 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 87.15 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.01 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 87.0 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 86.93 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 86.88 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 86.82 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 86.73 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 86.57 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 86.54 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 86.2 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 86.1 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 86.04 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.97 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 85.9 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.79 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.74 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.72 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.47 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 85.39 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.11 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 85.08 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 85.01 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 84.87 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 84.85 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 84.69 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 84.52 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.51 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 84.5 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.35 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 84.26 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 84.19 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.06 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.05 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.44 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 83.29 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.13 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 82.81 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 82.76 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 82.75 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 82.7 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.58 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 82.49 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 82.47 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 82.45 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 82.41 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 82.29 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 82.27 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 82.17 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 81.91 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 81.89 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 81.4 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 81.27 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 80.33 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 80.2 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 80.04 |
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=100.00 E-value=1e-38 Score=265.95 Aligned_cols=293 Identities=19% Similarity=0.180 Sum_probs=213.9
Q ss_pred HHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99719949998369983550599999998760499509999554389999999999999477558837799841546899
Q 000916 200 TVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGK 279 (1225)
Q Consensus 200 ~i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IRles~~s~ 279 (1225)
++++++.++|.++||||||+++.+.+++....++ .+++++.|+|.+|.++++++.... +...++ ..+...+.
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~--~~~lvi~Ptr~La~q~~~~l~~~~----~~~~~~--~~~~~~~~ 76 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRG--LRTLILAPTRVVAAEMEEALRGLP----IRYQTP--AIRAEHTG 76 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHHHTTTSC----CBCCC----------C
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHHHCCC----CCEEEE--EEEECCCC
T ss_conf 8646994999979999787999999999987269--989998238999999999985487----521113--78501257
Q ss_pred CCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 73199983089999998228441000279953223477408996163102443028999999867579983699971456
Q 000916 280 HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 280 ~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHER~~~tD~LL~lLr~ll~~~~~LklILMSATl 359 (1225)
.+.++++|++.|.+.+..+ ..+.++.+||+||+|..+...+.+..+++.+.. ++++++++||||+
T Consensus 77 ~~~i~~~t~~~l~~~~~~~--------------~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~-~~~~~~v~~SAT~ 141 (305)
T d2bmfa2 77 REIVDLMCHATFTMRLLSP--------------IRVPNYNLIIMDEAHFTDPASIAARGYISTRVE-MGEAAGIFMTATP 141 (305)
T ss_dssp CCSEEEEEHHHHHHHHTSS--------------SCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSSC
T ss_pred CCCCCCCCCHHHHHHHHCC--------------CCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHC-CCCCEEEEEECCC
T ss_conf 6530137748999998458--------------531540089853011125205788899998416-6531389941578
Q ss_pred CHHHHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 68889734189995823893013269984236876310234445543456899996103443221699987311524687
Q 000916 360 DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFD 439 (1225)
Q Consensus 360 d~~~fs~YF~~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~i~~~~~~~~~~ 439 (1225)
.... .......+|+.....+. +..
T Consensus 142 ~~~~----------~~~~~~~~~~~~~~~~~--------------------~~~-------------------------- 165 (305)
T d2bmfa2 142 PGSR----------DPFPQSNAPIMDEEREI--------------------PER-------------------------- 165 (305)
T ss_dssp TTCC----------CSSCCCSSCEEEEECCC--------------------CCS--------------------------
T ss_pred CCCE----------EEECCCCCCCEEEEEEC--------------------CHH--------------------------
T ss_conf 7643----------34023478612799861--------------------588--------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89997620499773233344568852010036875301456420153200000133012100223680469999999766
Q 000916 440 MLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHME 519 (1225)
Q Consensus 440 ~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~a~~~~~~~~~~~l~~~~~ 519 (1225)
.. . .+
T Consensus 166 -----------------~~--------------~-----------------------~~--------------------- 170 (305)
T d2bmfa2 166 -----------------SW--------------N-----------------------SG--------------------- 170 (305)
T ss_dssp -----------------CC--------------S-----------------------SC---------------------
T ss_pred -----------------HH--------------H-----------------------HH---------------------
T ss_conf -----------------89--------------9-----------------------99---------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 43224678999886531059100018999999999870399982999959999999999999709999999963999735
Q 000916 520 NALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLH 599 (1225)
Q Consensus 520 ~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILVFLPG~~eI~~l~~~L~~~~~~~~~~~~~il~LH 599 (1225)
...+ ...++.+|||+++..+++.+.+.|.... +.+.++|
T Consensus 171 --------------------------------~~~~--~~~~~~~lvf~~~~~~~~~l~~~L~~~~-------~~~~~l~ 209 (305)
T d2bmfa2 171 --------------------------------HEWV--TDFKGKTVWFVPSIKAGNDIAACLRKNG-------KKVIQLS 209 (305)
T ss_dssp --------------------------------CHHH--HSSCSCEEEECSCHHHHHHHHHHHHHHT-------CCCEECC
T ss_pred --------------------------------HHHH--HHHCCCEEEEECCHHHHHHHHHHHHHCC-------CCEEEEC
T ss_conf --------------------------------9999--9607998999630999999999998679-------9899957
Q ss_pred CCCCHHHHHHHHCCCCCCCCEEEEECCHHCCCCCCCCEEEEEECCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 99998989987259999982599823200004677974899938986431--1258998311344324783498630746
Q 000916 600 SMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEK--SYDPYNNVSTLQSSWVSKASAKQRAGRA 677 (1225)
Q Consensus 600 S~l~~~eQ~~vf~~~p~G~rKIILATNIAEtSITI~dV~yVIDsG~~Ke~--~yd~~~~~s~L~~~wiSkasa~QR~GRA 677 (1225)
+++...+ +..+..|.+++++||+++|.|+|+ ++.+|||+|..... .||+.+++..+...++|++++.||+|||
T Consensus 210 ~~~~~~~----~~~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~ 284 (305)
T d2bmfa2 210 RKTFDSE----YIKTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRV 284 (305)
T ss_dssp TTCHHHH----GGGGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTS
T ss_pred CCCHHHH----HHHHHCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCC
T ss_conf 8384777----754310001135556788725788-84089975874146573389876388044569988983241186
Q ss_pred CCCCCEEEE-EECCHH
Q ss_conf 987540799-726887
Q 000916 678 GRCQAGICY-HLYSQL 692 (1225)
Q Consensus 678 GR~~pG~Cy-rLys~~ 692 (1225)
||.+.|..+ -||...
T Consensus 285 GR~~~~~~~~~~~~~~ 300 (305)
T d2bmfa2 285 GRNPKNENDQYIYMGE 300 (305)
T ss_dssp SCSSSCCCEEEEECSC
T ss_pred CCCCCCCEEEEEECCC
T ss_conf 8289992699998998
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|