Citrus Sinensis ID: 001155

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------
MTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
ccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHcHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHccccEEEEcccccccHHHcHHccccccccEEEEccHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHcccHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccEEEEEcHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEcccccccHHHHHccccccccccccEEEEcccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEHHHcccccHHHHHccccccccccccccccHHHHHHHHHHHHHcccHHHHHHcccccccccEEEEEcHHHcHHHHcccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEccccccccccccccccccHHHHHcccccccccccccccccccccccccccc
ccccccccHHccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHcccccHHHHHHHHHccccEEEEEcccccccHHEEcHHHcccccEEEEcHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccEEEEEEccHHHcccHHHHHHHHHHHHccccEEEEEEcHHHHccccccccHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHcccccEEEEEccccccEEEEEEEcccccccEEEEEccHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHcccEEEEEEEEEccccccccEEEEEEEcccccHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHcccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHcccccEcEccccccccHHHHHHHHHHHHHcccEEEEcEcccccccccEEEEccHHHHHHHHccccEEEEEccccccHcHHHHccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHccccccHHccccHHHHHHHHHHHHHccccccccHHHHHcccc
mtgqiqnfprlhsAEVEKAWHTLSSLQISrrnyirpglstpvehsdndashnvsrraslqsssdgskfsepmnnrqkgsqinfnvneparctgsfhlsnnvrdagagkglrgqnEIKASVVANahfkfsdgfgnhtteagqiDESAEVLAnkidddeiletIDVDQIVMEHyhssctpkpsisrlpsitpnagndkfarqdetclppelcsicnhgcklglcpetsshIQDMKDMLIAISNELLdnatnlspaQTEKLRQERLQLSKQIQLLEGYRQAEerqkshfsasttrtyqyetpqpavlkidpirfdTQVHLYnesegygnwnsssvsfssvdrlgvssypverepfipkIIKVNYiegsndqkwsswdfpwtkkleannkkvfgnhsfrpnqREIINATMSGHDVFvlmptgggksltyqlpalicpgitlVISPLVSLIQDQIMHLLQANipatflsgnmeWTEQQEILRELNSDYCKykllyvtpekvakSDVLLRQLESLNARELLARIVIDeahcvsqwghdfrpdyqglgilkqkfpntpvlaLTATATASVKEDVVQALGLVNCIIfrqsfnrpnlwmDCEKVAERLQVGLSYGHFFLLKEFYVVSLEcghkaafyhgsidpaQRAFVQKQWSKDEINIICATVafgmginkpdvRFVIHhslpksiegyhqecgragrdgqrssCVLYYSYSDFIRVKHMISqgvaeqspftpghnrfnvansgrvleTNTENLLRMVSYCENDVDCRRLLQLVhfgekfdsahckktcdncsKIKSFIEKDVTDTAKKLVELVKLtgqqfssshILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQskahnliigrqnvvlrfpsainstklsksdvtpakgsllsgklspsrndtpsqpqnevdLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQhlskrvprteeELLEINGIGKAKVSKYGVRLLETIESTIKEFYktdkngsssndsndsgkrrrdeneapnankgddddftksTARSKkrasksqnktvevinhnepdsyecvddldfdeYEYVYemngsttkpdqnnggrvlprwsmfsenr
mtgqiqnfprlhsAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRaslqsssdgskfsepmnnrQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSsctpkpsisrlpsITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRqaeerqkshfsasttrtyqyetpqpavlKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVssypverepfipKIIKVNYIEGSNDQKWSSWDFPWTKKLEANnkkvfgnhsfrpNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGragrdgqrSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGekfdsahckktcdNCSKIKSFIEKDVTDTAKKLVELVKLtgqqfssshiLEVFRGSLNQYVKKHRHETlslhgagkhlakSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNqskahnliigrqnvvLRFPSAInstklsksdvtpaKGSLlsgklspsrndtpsqpqnevdlNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLeingigkakvskygVRLLETIESTIKefyktdkngsssndsndsgkrrrdeneapnankgddddftkstarskkrasksqnktvevinhnepdsyecVDDLDFDEYEYVYEMngsttkpdqnnggrvlprwsmfsenr
MTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDPIRFDTQVHLYNESEGYGNWNsssvsfssvDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVlaltatataSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAkgsllsgklsPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTdkngsssndsndsgkrrrdENEAPNANKGDDDDFtkstarskkrasksQNKTVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
******************AWHTLSSLQI******************************************************************F*******************EIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHS***************************ETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELL***************************************************YETPQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAI***************************************NLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFY****************************************************************SYECVDDLDFDEYEYVYEM**************************
*************AEVEKAWHTLSSLQI**RNYIRPGLSTPVE***********************************************************************************************************NKIDDDEILETIDVD*******************************************LCSICNHGCKLGLCPETSSHIQDMKDMLIA******************************************************************************************************************************************WTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKH*********************A*SGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVL*********************************************NLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTI********************************************************************SYECVDDLDFDEYEY***********************SMF****
MTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPV******************************NNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEG*******************YQYETPQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINST*******************************NEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTD**********************PNANKGD*********************TVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
MTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSD******************************************GKGLRGQNEIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEE****************ETPQPAVLKIDPIRFDTQVHLYNES*****************RLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVA*******GHNRF***NSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPS************************************NEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEF******************************KGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGGRVLPRWSMFS***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1136 2.2.26 [Sep-21-2011]
Q8L8401188 ATP-dependent DNA helicas yes no 0.945 0.904 0.602 0.0
Q9FT701150 ATP-dependent DNA helicas no no 0.892 0.881 0.576 0.0
Q098111328 ATP-dependent DNA helicas yes no 0.556 0.475 0.366 1e-125
Q9VGI81487 Bloom syndrome protein ho yes no 0.522 0.398 0.409 1e-121
O887001416 Bloom syndrome protein ho yes no 0.533 0.427 0.386 1e-120
P541321417 Bloom syndrome protein OS yes no 0.531 0.426 0.384 1e-118
Q9DEY91364 Bloom syndrome protein ho N/A no 0.536 0.446 0.366 1e-117
P351871447 ATP-dependent helicase SG yes no 0.455 0.357 0.411 1e-116
Q9I9201142 Bloom syndrome protein ho no no 0.514 0.512 0.372 1e-107
P46063649 ATP-dependent DNA helicas no no 0.429 0.751 0.389 1e-106
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=1 Back     alignment and function desciption
 Score = 1310 bits (3390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 704/1169 (60%), Positives = 834/1169 (71%), Gaps = 95/1169 (8%)

Query: 7    NFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRR-ASLQSSSDG 65
            N   L   ++ KAW  LSSL ++   Y+RPG++ P++   ND+     R  A + SS+ G
Sbjct: 69   NVHTLAHPQISKAWRALSSLSVNN-TYLRPGVTPPIDVGTNDSYSARERSTAKVISSTGG 127

Query: 66   SKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDA-GAGKGLRGQNEIKASVVANA 124
            S +S    N         NV+   R   SF  S    D   A K  RG NEI+ S  +  
Sbjct: 128  SVYSSTRPNLSA-----MNVSGTGRSFHSFPSSVPGDDKIVAEKFPRGNNEIRESEPSCT 182

Query: 125  HFK-FSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSIS 183
            H       FGN    A Q  ES +   + +DDD+ILE IDVDQIVMEHYHS+ TP+PS+S
Sbjct: 183  HLNGVEKSFGNSAFPAEQF-ESRKACLDDMDDDDILENIDVDQIVMEHYHSTSTPQPSVS 241

Query: 184  RLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNEL 243
                 TP         ++E  LPPELCS C+HG KLGLCPE S+H++ MKD+L+AISNEL
Sbjct: 242  NFSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHVEQMKDVLLAISNEL 301

Query: 244  LDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSAST-TRTYQYETPQPA 302
            LD+AT+LSP +  +LRQERL+L KQIQ LE + + +E QKS F +ST TR +QYETP+  
Sbjct: 302  LDDATDLSPDRVGQLRQERLRLKKQIQQLENHIRDKESQKSQFLSSTATRIFQYETPKST 361

Query: 303  VLKIDPIRFDTQVHLYNESE-GYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNY 361
              K+D  + D + H+ ++      +WN+   S  SVDR G+SS PVERE ++PKII V Y
Sbjct: 362  NYKMDQPQTDFRAHVSDQGRYACDSWNTPRDSSFSVDRYGLSSAPVEREQYVPKIIDVTY 421

Query: 362  IEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGK 421
             EGSND+KWSS +FPWT+KLE NNKKVFGNHSFRPNQREIINATMSG DVFVLMPTGGGK
Sbjct: 422  TEGSNDKKWSSREFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGK 481

Query: 422  SLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNS 481
            SLTYQLPALIC GITLVISPLVSLIQDQIM+LLQANIPA  LS  MEW EQ +I +ELNS
Sbjct: 482  SLTYQLPALICGGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNS 541

Query: 482  DYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541
            ++ KYKLLYVTPEKVAKSD LLR LE+LN+R LLAR VIDEAHCVSQWGHDFRPDYQ LG
Sbjct: 542  EHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLG 601

Query: 542  ILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW------------ 589
            ILKQKFPN PVLALTATATASVKEDVVQALGLVNC++FRQSFNRPNLW            
Sbjct: 602  ILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLE 661

Query: 590  ----------------------MDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAF 627
                                  MDCEKV+ERLQ                   E GHKAAF
Sbjct: 662  DIDKFIKENHFDECGIIYCLSRMDCEKVSERLQ-------------------EFGHKAAF 702

Query: 628  YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
            YHGS++P QRAF+Q QWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG
Sbjct: 703  YHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 762

Query: 688  RAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENL 747
            RAGRDGQRSSCVLYY Y D+IRVKHMISQG  +QSP   G+NR  VA+SGR+LETNTENL
Sbjct: 763  RAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNR--VASSGRLLETNTENL 820

Query: 748  LRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELV 807
            LRMV YCEN+V+CRR LQLVH GEKFDS +CKKTCDNC   +S I+KDVT   ++LVELV
Sbjct: 821  LRMVRYCENEVECRRFLQLVHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVELV 880

Query: 808  KLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLM 867
            K TG++FSS+HILEV+RGSLNQ VKKHRHETL  HGAGKHL+K E SRIL +LV ED L+
Sbjct: 881  KQTGERFSSAHILEVYRGSLNQMVKKHRHETLQFHGAGKHLSKIEVSRILHYLVTEDILV 940

Query: 868  EEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLS 927
            E+V+KSD+YGSVSS+L+VN +KA  L  G Q +V++FPS++   K SK   T AKG L S
Sbjct: 941  EDVRKSDMYGSVSSLLQVNNAKATILFSGSQTIVMKFPSSVKVLKPSKQGATAAKGPLTS 1000

Query: 928  GKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLS 987
             K S     T   P    D+NLSA +Y++LR LRT LVKEA +GVMAYHIF N+TLQ +S
Sbjct: 1001 EKQSTLPLTTEDAPPK--DVNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTLQQIS 1058

Query: 988  KRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGS-SSNDSNDSGKRR 1046
            +R+PRT+EELLEING+GKAKVSKYG +LLETIE+T+ E+Y T+K  S  SNDS DSGKRR
Sbjct: 1059 RRIPRTKEELLEINGLGKAKVSKYGDQLLETIETTVNEYYGTNKKDSIISNDSPDSGKRR 1118

Query: 1047 RDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECVD------DLD 1100
            RDEN +PN    +DDDF  S ++S K+  +  NK+ EV++       EC+D      +LD
Sbjct: 1119 RDENISPNV--AEDDDFEVSPSQSCKKTVR--NKSNEVLHG------ECIDGDRRGMELD 1168

Query: 1101 FDEYEYVYEMNGSTTKPDQNNGGRVLPRW 1129
            FD      + +GS  +P+    GRVLP W
Sbjct: 1169 FD----FKDEDGSEIRPE----GRVLP-W 1188
3'-5' DNA helicase that may play a role in the repair of DNA. Required for maintenance of genome stability by modulation of the DNA damage response and repression of crossovers. Confers resistance to genotoxic stress.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana GN=RECQL4B PE=2 SV=1 Back     alignment and function description
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1 Back     alignment and function description
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309 PE=1 SV=1 Back     alignment and function description
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1 Back     alignment and function description
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1 Back     alignment and function description
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1 Back     alignment and function description
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM PE=2 SV=1 Back     alignment and function description
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1136
2555796791233 DNA helicase hus2, putative [Ricinus com 0.974 0.897 0.698 0.0
2240704341194 predicted protein [Populus trichocarpa] 0.938 0.892 0.694 0.0
2977395741235 unnamed protein product [Vitis vinifera] 0.972 0.894 0.673 0.0
2254481931224 PREDICTED: ATP-dependent DNA helicase Q- 0.956 0.888 0.675 0.0
449457093 1269 PREDICTED: ATP-dependent DNA helicase Q- 0.970 0.869 0.628 0.0
3565288151160 PREDICTED: ATP-dependent DNA helicase Q- 0.864 0.846 0.681 0.0
356541884 1534 PREDICTED: ATP-dependent DNA helicase Q- 0.909 0.673 0.633 0.0
3574454231156 ATP-dependent DNA helicase Q1 [Medicago 0.911 0.895 0.603 0.0
2978494581189 DNA helicase [Arabidopsis lyrata subsp. 0.945 0.903 0.602 0.0
306819871188 ATP-dependent DNA helicase Q-like 4A [Ar 0.945 0.904 0.602 0.0
>gi|255579679|ref|XP_002530679.1| DNA helicase hus2, putative [Ricinus communis] gi|223529772|gb|EEF31710.1| DNA helicase hus2, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1617 bits (4188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/1167 (69%), Positives = 930/1167 (79%), Gaps = 60/1167 (5%)

Query: 1    MTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQ 60
            +T QIQ+F RL S +VEKAWH LS LQIS RNY++PG + P+++++     +V +R +  
Sbjct: 69   LTCQIQSFQRLQSPQVEKAWHALSCLQISCRNYLQPGKTGPLKNAN--LLQDVGQRPTFC 126

Query: 61   SSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASV 120
            SSSDG K+SE ++  Q  S+     N+  R  G++   +N   A  G GL+ Q++IKAS 
Sbjct: 127  SSSDGGKYSECLHVHQNFSESGAKNNKSERYMGNYVPQDNATAAETGNGLQRQSQIKASA 186

Query: 121  VANAHFK-FSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPK 179
              N   K FS  F +H+       ESAE   + IDDD++L  IDVDQIVMEH  S+CTP 
Sbjct: 187  ANNTESKTFSGSFSDHSVYTSHNKESAEASTDFIDDDDLLGNIDVDQIVMEHNQSNCTP- 245

Query: 180  PSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAI 239
            P+ S+ PSITP A    FAR DE  LP ELC  CNHG KLGLCPE  +H+Q+MKDMLIA+
Sbjct: 246  PN-SKFPSITPTADKHNFARSDEMFLPTELCQNCNHGFKLGLCPEAGNHLQEMKDMLIAV 304

Query: 240  SNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTT-RTYQYET 298
            SNELLDN+TNLS  Q EKLRQ+RLQL+KQIQ LE Y + +ERQKSHFSAST  + +QYET
Sbjct: 305  SNELLDNSTNLSSVQIEKLRQDRLQLNKQIQQLESYLRDKERQKSHFSASTANQNFQYET 364

Query: 299  PQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIK 358
            PQ A  KIDP+RFD QV+L NES GY +WN+ S+SFSSVDR G+SS P+EREP+IPK ++
Sbjct: 365  PQCAANKIDPMRFDAQVYLRNESGGYESWNTPSISFSSVDRFGISSGPIEREPYIPKFVE 424

Query: 359  VNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTG 418
            VNYIEGSND KWSS +FPWT KLEA NKKVFGNHSFRPNQRE+INATMSG DVFVLMPTG
Sbjct: 425  VNYIEGSNDPKWSSTNFPWTTKLEAYNKKVFGNHSFRPNQREVINATMSGFDVFVLMPTG 484

Query: 419  GGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRE 478
            GGKSLTYQLPAL+CPGITLVISPLVSLIQDQIMHLLQANI A +LS NMEW EQQEILRE
Sbjct: 485  GGKSLTYQLPALVCPGITLVISPLVSLIQDQIMHLLQANISAAYLSANMEWAEQQEILRE 544

Query: 479  LNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQ 538
            L+SDYCKYKLLYVTPEKVAKSDVLLR LESLNAR LLARIVIDEAHCVSQWGHDFRPDY+
Sbjct: 545  LSSDYCKYKLLYVTPEKVAKSDVLLRNLESLNARGLLARIVIDEAHCVSQWGHDFRPDYK 604

Query: 539  GLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW--------- 589
             LGILK+KF  TPVLALTATATASVKEDVVQALGLV+CIIFRQSFNRPNLW         
Sbjct: 605  ELGILKKKFEKTPVLALTATATASVKEDVVQALGLVDCIIFRQSFNRPNLWYSVVPKTKK 664

Query: 590  -------------------------MDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHK 624
                                     MDCEKVAE+LQ                   ECGHK
Sbjct: 665  CLDDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQ-------------------ECGHK 705

Query: 625  AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
            AAFYHG++D AQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ
Sbjct: 706  AAFYHGNMDAAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 765

Query: 685  ECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNT 744
            ECGRAGRDG RSSCVLYYSYSD+IRVKHMI QG  EQSP+TPG+NR N  NS R+LE NT
Sbjct: 766  ECGRAGRDGLRSSCVLYYSYSDYIRVKHMIVQGQIEQSPWTPGYNRINNTNSDRILEKNT 825

Query: 745  ENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLV 804
            ENLLRMVSYCENDVDCRR+LQL+HFGEKF+S +CKKTCDNCS+IK+ +EKDVT+TAK+LV
Sbjct: 826  ENLLRMVSYCENDVDCRRILQLLHFGEKFNSGNCKKTCDNCSQIKALVEKDVTETAKQLV 885

Query: 805  ELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIED 864
            +LVKLTGQQFSSSHILEV+RGSLNQYVKK+RHETLSLHGAGKHL+K EASRILRHLV +D
Sbjct: 886  QLVKLTGQQFSSSHILEVYRGSLNQYVKKYRHETLSLHGAGKHLSKGEASRILRHLVTDD 945

Query: 865  FLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGS 924
            FL E+VKKSDVYGSVSS+LKVN+SKA+NL  G Q ++LRFPS + ++K SK D TPAKGS
Sbjct: 946  FLQEDVKKSDVYGSVSSILKVNESKAYNLCSGGQTIILRFPSTMKASKPSKFDATPAKGS 1005

Query: 925  LLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQ 984
            L SGK SP   D+P+Q Q EVDL+LSA LYS+LRMLRTLLVKEAGEGVMAYHIFGNATLQ
Sbjct: 1006 LTSGKQSPPEVDSPAQAQPEVDLHLSAILYSALRMLRTLLVKEAGEGVMAYHIFGNATLQ 1065

Query: 985  HLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGSSSNDSNDSGK 1044
            HLSKR+PRT+EELLEINGIGKAKVSKYG RLLETIESTIKE+YKTDKN SSSN SNDS K
Sbjct: 1066 HLSKRIPRTKEELLEINGIGKAKVSKYGDRLLETIESTIKEYYKTDKNSSSSNGSNDSVK 1125

Query: 1045 RRRDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECV-DDLDFDE 1103
            RRRD + APN N  + DDFTKST RSKKR +K QNK  ++    E ++ +C+ DDLDF++
Sbjct: 1126 RRRDASRAPNGNAEEADDFTKSTGRSKKRVAKLQNKDTDIYTSRETNNSQCLDDDLDFED 1185

Query: 1104 YEYVYEMNGSTTKPDQNNGGRVLPRWS 1130
              + +E NGS  +  +N+ GRVLP WS
Sbjct: 1186 SCHDFETNGSAIEAGKNDAGRVLPSWS 1212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224070434|ref|XP_002303149.1| predicted protein [Populus trichocarpa] gi|222840581|gb|EEE78128.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297739574|emb|CBI29756.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225448193|ref|XP_002265586.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449457093|ref|XP_004146283.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial [Cucumis sativus] gi|449511185|ref|XP_004163888.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356528815|ref|XP_003532993.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max] Back     alignment and taxonomy information
>gi|356541884|ref|XP_003539402.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max] Back     alignment and taxonomy information
>gi|357445423|ref|XP_003592989.1| ATP-dependent DNA helicase Q1 [Medicago truncatula] gi|355482037|gb|AES63240.1| ATP-dependent DNA helicase Q1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297849458|ref|XP_002892610.1| DNA helicase [Arabidopsis lyrata subsp. lyrata] gi|297338452|gb|EFH68869.1| DNA helicase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30681987|ref|NP_172562.2| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana] gi|75329797|sp|Q8L840.1|RQL4A_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 4A; AltName: Full=RecQ-like protein 4A; Short=AtRecQ4A; Short=AtRecQl4A; AltName: Full=SGS1-like protein; Short=AtSGS1 gi|21539533|gb|AAM53319.1| DNA helicase isolog [Arabidopsis thaliana] gi|33589672|gb|AAQ22602.1| At1g10930 [Arabidopsis thaliana] gi|332190544|gb|AEE28665.1| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1136
TAIR|locus:21973941188 RECQ4A [Arabidopsis thaliana ( 0.965 0.923 0.580 0.0
DICTYBASE|DDB_G02921301259 blm "Bloom syndrome protein" [ 0.626 0.565 0.377 3.9e-125
POMBASE|SPAC2G11.121328 rqh1 "RecQ type DNA helicase R 0.466 0.399 0.388 6.2e-112
FB|FBgn00029061487 Blm "Bloom syndrome helicase o 0.531 0.406 0.396 3.3e-107
UNIPROTKB|P46063649 RECQL "ATP-dependent DNA helic 0.199 0.349 0.462 1e-95
ZFIN|ZDB-GENE-070702-51420 blm "Bloom syndrome" [Danio re 0.266 0.213 0.417 7.4e-95
UNIPROTKB|F1NPI7661 RECQL "Uncharacterized protein 0.192 0.331 0.475 6.3e-94
UNIPROTKB|E1BQ041417 BLM "Uncharacterized protein" 0.194 0.155 0.520 2.6e-92
MGI|MGI:13283621416 Blm "Bloom syndrome, RecQ heli 0.194 0.156 0.511 3.4e-92
UNIPROTKB|E2RS761407 BLM "Uncharacterized protein" 0.194 0.157 0.515 7.7e-92
TAIR|locus:2197394 RECQ4A [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3164 (1118.8 bits), Expect = 0., P = 0.
 Identities = 665/1146 (58%), Positives = 799/1146 (69%)

Query:     7 NFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQ--SSSD 64
             N   L   ++ KAW  LSSL ++   Y+RPG++ P++   ND S++   R++ +  SS+ 
Sbjct:    69 NVHTLAHPQISKAWRALSSLSVNN-TYLRPGVTPPIDVGTND-SYSARERSTAKVISSTG 126

Query:    65 GSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDA-GAGKGLRGQNEIKASVVAN 123
             GS +S    N         NV+   R   SF  S    D   A K  RG NEI+ S  + 
Sbjct:   127 GSVYSSTRPNLSA-----MNVSGTGRSFHSFPSSVPGDDKIVAEKFPRGNNEIRESEPSC 181

Query:   124 AHFK-FSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSI 182
              H       FGN    A Q  ES +   + +DDD+ILE IDVDQIVMEHYHS+ TP+PS+
Sbjct:   182 THLNGVEKSFGNSAFPAEQF-ESRKACLDDMDDDDILENIDVDQIVMEHYHSTSTPQPSV 240

Query:   183 SRLPSITPNAGNDKFARQDETC-LPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISN 241
             S     TP       +R +E C LPPELCS C+HG KLGLCPE S+H++ MKD+L+AISN
Sbjct:   241 SNFSLRTPPVDRSA-SRLEEECNLPPELCSNCSHGIKLGLCPEASTHVEQMKDVLLAISN 299

Query:   242 ELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSAST-TRTYQYETPQ 300
             ELLD+AT+LSP +  +LRQERL+L KQIQ LE + + +E QKS F +ST TR +QYETP+
Sbjct:   300 ELLDDATDLSPDRVGQLRQERLRLKKQIQQLENHIRDKESQKSQFLSSTATRIFQYETPK 359

Query:   301 PAVLKIDPIRFDTQVHLYNESE-GYGNWNXXXXXXXXXDRLGVSSYPVEREPFIPKIIKV 359
                 K+D  + D + H+ ++      +WN         DR G+SS PVERE ++PKII V
Sbjct:   360 STNYKMDQPQTDFRAHVSDQGRYACDSWNTPRDSSFSVDRYGLSSAPVEREQYVPKIIDV 419

Query:   360 NYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGG 419
              Y EGSND+KWSS +FPWT+KLE NNKKVFGNHSFRPNQREIINATMSG DVFVLMPTGG
Sbjct:   420 TYTEGSNDKKWSSREFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGG 479

Query:   420 GKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILREL 479
             GKSLTYQLPALIC GITLVISPLVSLIQDQIM+LLQANIPA  LS  MEW EQ +I +EL
Sbjct:   480 GKSLTYQLPALICGGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQEL 539

Query:   480 NSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG 539
             NS++ KYKLLYVTPEKVAKSD LLR LE+LN+R LLAR VIDEAHCVSQWGHDFRPDYQ 
Sbjct:   540 NSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQS 599

Query:   540 LGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDC----EKV 595
             LGILKQKFPN PV         SVKEDVVQALGLVNC++FRQSFNRPNLW       +K 
Sbjct:   600 LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKC 659

Query:   596 AERLQVGLSYGHFFLLKEFYVVS-LEC----------GHKAAFYHGSIDPAQRAFVQKQW 644
              E +   +   HF      Y +S ++C          GHKAAFYHGS++P QRAF+Q QW
Sbjct:   660 LEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQW 719

Query:   645 SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSY 704
             SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY Y
Sbjct:   720 SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGY 779

Query:   705 SDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLL 764
              D+IRVKHMISQG  +QSP   G+NR  VA+SGR+LETNTENLLRMV YCEN+V+CRR L
Sbjct:   780 GDYIRVKHMISQGGVDQSPMATGYNR--VASSGRLLETNTENLLRMVRYCENEVECRRFL 837

Query:   765 QLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFR 824
             QLVH GEKFDS +CKKTCDNC   +S I+KDVT   ++LVELVK TG++FSS+HILEV+R
Sbjct:   838 QLVHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVELVKQTGERFSSAHILEVYR 897

Query:   825 GSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLK 884
             GSLNQ VKKHRHETL  HGAGKHL+K E SRIL +LV ED L+E+V+KSD+YGSVSS+L+
Sbjct:   898 GSLNQMVKKHRHETLQFHGAGKHLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLQ 957

Query:   885 VNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNE 944
             VN +KA  L  G Q +V++FPS++   K SK   T A               T   P   
Sbjct:   958 VNNAKATILFSGSQTIVMKFPSSVKVLKPSKQGATAAKGPLTSEKQSTLPLTTEDAPPK- 1016

Query:   945 VDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIG 1004
              D+NLSA +Y++LR LRT LVKEA +GVMAYHIF N+TLQ +S+R+PRT+EELLEING+G
Sbjct:  1017 -DVNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLG 1075

Query:  1005 KAKVSKYGVRLLETIESTIKEFYKTXXXXXXXXXXX-XXXXXXXXENEAPNANKGDDDDF 1063
             KAKVSKYG +LLETIE+T+ E+Y T                    EN +PN    +DDDF
Sbjct:  1076 KAKVSKYGDQLLETIETTVNEYYGTNKKDSIISNDSPDSGKRRRDENISPNV--AEDDDF 1133

Query:  1064 XXXXXXXXXXXXXXQNKTVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGG 1123
                           +NK+ EV++    D      +LDFD ++   + +GS  +P+    G
Sbjct:  1134 EVSPSQSCKKTV--RNKSNEVLHGECIDGDRRGMELDFD-FK---DEDGSEIRPE----G 1183

Query:  1124 RVLPRW 1129
             RVLP W
Sbjct:  1184 RVLP-W 1188
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006260 "DNA replication" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA;IMP
GO:0006310 "DNA recombination" evidence=IEA;IMP
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA
GO:0070417 "cellular response to cold" evidence=IEP
GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP
GO:0000723 "telomere maintenance" evidence=IMP
GO:0000724 "double-strand break repair via homologous recombination" evidence=IGI;RCA;IMP
GO:0006974 "response to DNA damage stimulus" evidence=IGI;IMP
GO:0043138 "3'-5' DNA helicase activity" evidence=IMP;IDA
GO:0051276 "chromosome organization" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
DICTYBASE|DDB_G0292130 blm "Bloom syndrome protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC2G11.12 rqh1 "RecQ type DNA helicase Rqh1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0002906 Blm "Bloom syndrome helicase ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P46063 RECQL "ATP-dependent DNA helicase Q1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070702-5 blm "Bloom syndrome" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPI7 RECQL "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQ04 BLM "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1328362 Blm "Bloom syndrome, RecQ helicase-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RS76 BLM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L840RQL4A_ARATH3, ., 6, ., 4, ., 1, 20.60220.94540.9040yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.120.946
3rd Layer3.6.40.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1136
PLN031371195 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 0.0
COG0514590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 1e-171
TIGR00614470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 1e-161
TIGR01389591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 1e-150
PRK11057607 PRK11057, PRK11057, ATP-dependent DNA helicase Rec 1e-128
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 4e-34
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-25
smart0095692 smart00956, RQC, This DNA-binding domain is found 7e-25
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 5e-23
pfam0938292 pfam09382, RQC, RQC domain 4e-22
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-21
smart0049082 smart00490, HELICc, helicase superfamily c-termina 6e-21
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 3e-19
pfam0057068 pfam00570, HRDC, HRDC domain 1e-14
COG1205851 COG1205, COG1205, Distinct helicase family with a 2e-12
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 2e-11
smart0034181 smart00341, HRDC, Helicase and RNase D C-terminal 1e-08
PLN00206518 PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel 3e-07
COG1199654 COG1199, DinG, Rad3-related DNA helicases [Transcr 8e-07
COG1201814 COG1201, Lhr, Lhr-like helicases [General function 7e-06
COG1203733 COG1203, COG1203, CRISPR-associated helicase Cas3 1e-05
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 2e-05
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 2e-04
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 5e-04
TIGR04121803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 6e-04
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 7e-04
PTZ00424401 PTZ00424, PTZ00424, helicase 45; Provisional 9e-04
COG1204766 COG1204, COG1204, Superfamily II helicase [General 0.001
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 0.002
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 0.003
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information 
 Score = 1808 bits (4684), Expect = 0.0
 Identities = 773/1154 (66%), Positives = 883/1154 (76%), Gaps = 68/1154 (5%)

Query: 4    QIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSS 63
               N   L S ++EKAWH LSSL I+  NY+RPG + P+++   D S +V +  +  SSS
Sbjct: 71   APVNVQTLASPQIEKAWHALSSLSINN-NYLRPGKTPPIDNGSTDLSSDVGQSTTKVSSS 129

Query: 64   DGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVAN 123
             G  + E  +  Q   +++   +  A  + S    +N   A A K  RG +EI+ASV  N
Sbjct: 130  TGGSYYEHNHPHQNQREVSGTNSSFASFSSSSVGDDN---ATAEKVPRGNSEIRASVPNN 186

Query: 124  AHFK-FSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSI 182
             H       F  ++    Q  ES E   ++IDDD+ILE IDVDQIVMEHY S+CTP+PS+
Sbjct: 187  THSNGVEGSFIKNSAHTAQQKESREASLDEIDDDDILENIDVDQIVMEHYQSTCTPQPSV 246

Query: 183  SRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNE 242
            S+ P ITP        R++E  LPPELCS C+HG KLGLCPE S+H++ MKDML+AISNE
Sbjct: 247  SKFPPITPTVDTFASRREEEQFLPPELCSNCSHGIKLGLCPEASTHVEQMKDMLLAISNE 306

Query: 243  LLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSAST-TRTYQYETPQP 301
            LLDNA +LSP Q E+LRQ+RLQL KQIQ LE + + +ERQKS FSAST TR +QYETPQ 
Sbjct: 307  LLDNAADLSPDQVEQLRQDRLQLKKQIQQLEIHIRDKERQKSQFSASTATRNFQYETPQS 366

Query: 302  AVLKIDPIRFDTQVHLYNESEGY--GNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKV 359
               KIDP++ D QVHL NE   Y   NWN+   SFSSVDR G+SS PVEREP++PK I V
Sbjct: 367  TNYKIDPMQTDAQVHLRNEQGRYEKDNWNTPRDSFSSVDRYGISSGPVEREPYVPKFIDV 426

Query: 360  NYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGG 419
             Y EGSND+KWSS +FPWTKKLE NNKKVFGNHSFRPNQREIINATMSG+DVFVLMPTGG
Sbjct: 427  TYTEGSNDKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGG 486

Query: 420  GKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILREL 479
            GKSLTYQLPALICPGITLVISPLVSLIQDQIM+LLQANIPA  LS  MEW EQ EIL+EL
Sbjct: 487  GKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQEL 546

Query: 480  NSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG 539
            +S+Y KYKLLYVTPEKVAKSD LLR LE+LN+R LLAR VIDEAHCVSQWGHDFRPDYQG
Sbjct: 547  SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606

Query: 540  LGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW---------- 589
            LGILKQKFPN PVLALTATATASVKEDVVQALGLVNC++FRQSFNRPNLW          
Sbjct: 607  LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKC 666

Query: 590  ------------------------MDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKA 625
                                    MDCEKVAERLQ                   E GHKA
Sbjct: 667  LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQ-------------------EFGHKA 707

Query: 626  AFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE 685
            AFYHGS+DPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE
Sbjct: 708  AFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE 767

Query: 686  CGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTE 745
            CGRAGRDGQRSSCVLYYSYSD+IRVKHMISQG  EQSP   G+NR  +A+SGR+LETNTE
Sbjct: 768  CGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNR--MASSGRILETNTE 825

Query: 746  NLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVE 805
            NLLRMVSYCEN+VDCRR LQLVHFGEKFDS +CKKTCDNCS  KS I+KDVT+ A++LVE
Sbjct: 826  NLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNCKKTCDNCSSSKSLIDKDVTEIARQLVE 885

Query: 806  LVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDF 865
            LVKLTG++FSS+HILEV+RGSLNQYVKKHRHETLSLHGAGKHL+K EASRIL +LV ED 
Sbjct: 886  LVKLTGERFSSAHILEVYRGSLNQYVKKHRHETLSLHGAGKHLSKGEASRILHYLVTEDI 945

Query: 866  LMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSL 925
            L E+VKKSD+YGSVSS+LKVN+SKA+ L  G Q +++RFPS++ ++K SK + TPAKG L
Sbjct: 946  LAEDVKKSDLYGSVSSLLKVNESKAYKLFSGGQTIIMRFPSSVKASKPSKFEATPAKGPL 1005

Query: 926  LSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQH 985
             SGK S     TP+QP   VDLNLSA LY++LR LRT LVKEAG+GVMAYHIFGNATLQ 
Sbjct: 1006 TSGKQSTLPMATPAQP--PVDLNLSAILYTALRKLRTALVKEAGDGVMAYHIFGNATLQQ 1063

Query: 986  LSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGSSSNDSNDSGKR 1045
            +SKR+PRT+EELLEING+GKAKVSKYG RLLETIESTI E+YKTDKN SSSNDS DSGKR
Sbjct: 1064 ISKRIPRTKEELLEINGLGKAKVSKYGDRLLETIESTINEYYKTDKNSSSSNDSPDSGKR 1123

Query: 1046 RRDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECVD-DLDFDEY 1104
            RRDEN   N N  +DDDFTKST++SKK+  K++NK VE  N  E D     D DLDF + 
Sbjct: 1124 RRDEN--INPNVAEDDDFTKSTSQSKKKTVKNKNKGVEHGNSRETDRRNQCDDDLDFKDS 1181

Query: 1105 EYVYEMNGSTTKPD 1118
            ++  E NGS   P 
Sbjct: 1182 DHDEERNGSAVLPW 1195

Length = 1195
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214936 smart00956, RQC, This DNA-binding domain is found in the RecQ helicase among others and has a helix-turn-helix structure Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|220217 pfam09382, RQC, RQC domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|201312 pfam00570, HRDC, HRDC domain Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|128635 smart00341, HRDC, Helicase and RNase D C-terminal Back     alignment and domain information
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1136
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 100.0
KOG0353695 consensus ATP-dependent DNA helicase [General func 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PTZ00110545 helicase; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
PRK13767876 ATP-dependent helicase; Provisional 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
PRK14701 1638 reverse gyrase; Provisional 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
COG1201814 Lhr Lhr-like helicases [General function predictio 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
KOG0334997 consensus RNA helicase [RNA processing and modific 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
KOG4284 980 consensus DEAD box protein [Transcription] 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0327397 consensus Translation initiation factor 4F, helica 99.97
COG1202830 Superfamily II helicase, archaea-specific [General 99.97
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.97
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.97
COG1205851 Distinct helicase family with a unique C-terminal 99.97
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.96
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.96
PRK09401 1176 reverse gyrase; Reviewed 99.96
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.96
PHA02558501 uvsW UvsW helicase; Provisional 99.96
PHA02653675 RNA helicase NPH-II; Provisional 99.95
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.95
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.95
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.94
PRK05580679 primosome assembly protein PriA; Validated 99.94
PRK13766773 Hef nuclease; Provisional 99.94
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 99.94
KOG0354746 consensus DEAD-box like helicase [General function 99.94
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.94
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.94
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.94
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.94
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.93
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.93
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.92
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.91
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 99.91
PRK04914956 ATP-dependent helicase HepA; Validated 99.91
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.9
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.9
COG45811041 Superfamily II RNA helicase [DNA replication, reco 99.9
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.9
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.9
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.87
PRK09694878 helicase Cas3; Provisional 99.86
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.86
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.84
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.84
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.84
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.84
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.83
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.83
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.81
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.8
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.8
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.8
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.78
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.75
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.74
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.71
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.7
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.7
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 99.7
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 99.69
PRK05298652 excinuclease ABC subunit B; Provisional 99.66
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.64
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.62
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 99.62
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.61
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.6
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.59
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.58
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.58
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 99.58
smart00487201 DEXDc DEAD-like helicases superfamily. 99.57
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 99.57
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.54
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.54
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.54
PF09382106 RQC: RQC domain; InterPro: IPR018982 This entry re 99.53
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 99.51
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.49
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.47
KOG0387923 consensus Transcription-coupled repair protein CSB 99.45
PF0057068 HRDC: HRDC domain Bloom syndrome. Werner syndrome. 99.45
COG4096875 HsdR Type I site-specific restriction-modification 99.44
COG4889 1518 Predicted helicase [General function prediction on 99.44
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.43
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.42
KOG1123776 consensus RNA polymerase II transcription initiati 99.4
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 99.4
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.4
smart0049082 HELICc helicase superfamily c-terminal domain. 99.39
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.32
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.32
smart0034181 HRDC Helicase and RNase D C-terminal. Hypothetical 99.3
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.3
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 99.3
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 99.25
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.23
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.21
KOG1002791 consensus Nucleotide excision repair protein RAD16 99.18
PRK14873665 primosome assembly protein PriA; Provisional 99.12
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.1
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 99.08
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 99.07
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.06
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.05
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 99.01
KOG4439901 consensus RNA polymerase II transcription terminat 99.0
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.91
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 98.83
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.72
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.63
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 98.58
KOG09211282 consensus Dosage compensation complex, subunit MLE 98.57
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.46
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.43
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 98.41
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.4
PF02399824 Herpes_ori_bp: Origin of replication binding prote 98.3
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 98.05
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.01
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.01
COG0610962 Type I site-specific restriction-modification syst 97.9
PRK15483986 type III restriction-modification system StyLTI en 97.86
PRK10829373 ribonuclease D; Provisional 97.83
TIGR01388367 rnd ribonuclease D. This model describes ribonucle 97.81
KOG2340698 consensus Uncharacterized conserved protein [Funct 97.53
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 97.34
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.21
COG3587985 Restriction endonuclease [Defense mechanisms] 97.16
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 97.1
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 97.1
PF1140880 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR02 97.0
KOG1803649 consensus DNA helicase [Replication, recombination 96.94
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.84
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 96.51
KOG18051100 consensus DNA replication helicase [Replication, r 96.32
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.3
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 96.19
PF1324576 AAA_19: Part of AAA domain 96.18
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 96.06
COG0349361 Rnd Ribonuclease D [Translation, ribosomal structu 95.57
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 95.49
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 95.45
TIGR00376637 DNA helicase, putative. The gene product may repre 95.39
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 95.35
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 95.23
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 95.08
PRK10875615 recD exonuclease V subunit alpha; Provisional 95.05
PF13871278 Helicase_C_4: Helicase_C-like 95.01
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 94.93
smart00492141 HELICc3 helicase superfamily c-terminal domain. 94.71
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 94.7
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 94.52
KOG1131755 consensus RNA polymerase II transcription initiati 94.51
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 94.42
smart00382148 AAA ATPases associated with a variety of cellular 94.36
smart00491142 HELICc2 helicase superfamily c-terminal domain. 94.21
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 94.19
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 94.14
PRK06526254 transposase; Provisional 94.14
PRK08727233 hypothetical protein; Validated 93.94
PRK14974336 cell division protein FtsY; Provisional 93.81
PRK08181269 transposase; Validated 93.69
KOG0383696 consensus Predicted helicase [General function pre 93.62
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 93.61
PRK08084235 DNA replication initiation factor; Provisional 93.51
KOG1001674 consensus Helicase-like transcription factor HLTF/ 93.38
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 93.36
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 93.31
PRK06893229 DNA replication initiation factor; Validated 93.24
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 92.96
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 92.88
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 92.84
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 92.75
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 92.65
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 92.47
cd01124187 KaiC KaiC is a circadian clock protein primarily f 92.43
cd01126384 TraG_VirD4 The TraG/TraD/VirD4 family are bacteria 92.25
PRK12377248 putative replication protein; Provisional 92.23
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 91.89
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 91.78
KOG0298 1394 consensus DEAD box-containing helicase-like transc 91.6
PF02534469 T4SS-DNA_transf: Type IV secretory system Conjugat 91.59
PRK06921266 hypothetical protein; Provisional 91.57
PF13173128 AAA_14: AAA domain 91.33
PRK07952244 DNA replication protein DnaC; Validated 91.21
PF00004132 AAA: ATPase family associated with various cellula 91.18
KOG2206687 consensus Exosome 3'-5' exoribonuclease complex, s 90.87
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 90.8
PTZ001121164 origin recognition complex 1 protein; Provisional 90.78
PRK00411394 cdc6 cell division control protein 6; Reviewed 90.77
PRK10867433 signal recognition particle protein; Provisional 90.75
PRK12422445 chromosomal replication initiation protein; Provis 90.61
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 90.42
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 90.41
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 90.37
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 90.37
PRK05973237 replicative DNA helicase; Provisional 90.32
PLN03025319 replication factor C subunit; Provisional 90.28
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 90.15
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 90.14
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 90.13
PRK05707328 DNA polymerase III subunit delta'; Validated 90.1
PRK08116268 hypothetical protein; Validated 90.08
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 89.88
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 89.7
PRK10536262 hypothetical protein; Provisional 89.69
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 89.61
TIGR02928365 orc1/cdc6 family replication initiation protein. M 89.53
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 89.49
PRK05642234 DNA replication initiation factor; Validated 89.43
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 89.39
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 89.3
TIGR00064272 ftsY signal recognition particle-docking protein F 89.29
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 89.13
PRK04195482 replication factor C large subunit; Provisional 89.04
PRK13897606 type IV secretion system component VirD4; Provisio 88.85
PRK04296190 thymidine kinase; Provisional 88.69
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 88.56
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 88.38
PRK05595444 replicative DNA helicase; Provisional 88.31
PRK05748448 replicative DNA helicase; Provisional 88.18
PRK08760476 replicative DNA helicase; Provisional 88.16
COG3421812 Uncharacterized protein conserved in bacteria [Fun 88.09
TIGR00959428 ffh signal recognition particle protein. This mode 88.06
PRK00149450 dnaA chromosomal replication initiation protein; R 88.01
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 88.01
PRK08903227 DnaA regulatory inactivator Hda; Validated 87.99
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 87.97
PRK11823446 DNA repair protein RadA; Provisional 87.89
PRK13889988 conjugal transfer relaxase TraA; Provisional 87.85
PRK10416318 signal recognition particle-docking protein FtsY; 87.8
PRK13850670 type IV secretion system protein VirD4; Provisiona 87.76
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 87.68
PRK12402337 replication factor C small subunit 2; Reviewed 87.67
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 87.63
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 87.6
PRK13833323 conjugal transfer protein TrbB; Provisional 87.21
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 87.2
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 86.92
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 86.67
cd03115173 SRP The signal recognition particle (SRP) mediates 86.63
PRK09165497 replicative DNA helicase; Provisional 86.42
PRK138261102 Dtr system oriT relaxase; Provisional 86.41
TIGR00362405 DnaA chromosomal replication initiator protein Dna 86.03
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 86.01
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 85.97
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 85.84
PRK106891147 transcription-repair coupling factor; Provisional 85.77
PRK05636505 replicative DNA helicase; Provisional 85.71
PHA02533534 17 large terminase protein; Provisional 85.7
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 85.69
PRK08769319 DNA polymerase III subunit delta'; Validated 85.56
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 85.51
TIGR00665434 DnaB replicative DNA helicase. This model describe 85.41
cd01128249 rho_factor Transcription termination factor rho is 85.29
PRK08506472 replicative DNA helicase; Provisional 85.25
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 85.12
cd01394218 radB RadB. The archaeal protein radB shares simila 85.07
PRK04328249 hypothetical protein; Provisional 85.07
PRK13822641 conjugal transfer coupling protein TraG; Provision 85.01
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 84.97
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 84.9
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 84.87
PRK06964342 DNA polymerase III subunit delta'; Validated 84.83
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 84.8
cd00983325 recA RecA is a bacterial enzyme which has roles in 84.8
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 84.77
PRK00771437 signal recognition particle protein Srp54; Provisi 84.75
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 84.74
PRK11054684 helD DNA helicase IV; Provisional 84.58
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 84.53
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 84.5
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 84.42
PHA02544316 44 clamp loader, small subunit; Provisional 84.36
PRK08840464 replicative DNA helicase; Provisional 84.21
PRK14087450 dnaA chromosomal replication initiation protein; P 84.16
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 84.03
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 83.98
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 83.96
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 83.95
PRK14088440 dnaA chromosomal replication initiation protein; P 83.92
TIGR02767623 TraG-Ti Ti-type conjugative transfer system protie 83.85
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 83.85
PRK08533230 flagellar accessory protein FlaH; Reviewed 83.84
PRK09112351 DNA polymerase III subunit delta'; Validated 83.72
PRK13341725 recombination factor protein RarA/unknown domain f 83.64
PRK09354349 recA recombinase A; Provisional 83.58
PHA02542473 41 41 helicase; Provisional 83.52
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 83.47
PRK06871325 DNA polymerase III subunit delta'; Validated 83.41
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 83.33
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 83.13
PRK13894319 conjugal transfer ATPase TrbB; Provisional 83.09
COG1484254 DnaC DNA replication protein [DNA replication, rec 83.07
PRK13876663 conjugal transfer coupling protein TraG; Provision 83.05
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 82.93
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 82.84
TIGR02237209 recomb_radB DNA repair and recombination protein R 82.78
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 82.73
PRK07940394 DNA polymerase III subunit delta'; Validated 82.67
PRK06321472 replicative DNA helicase; Provisional 82.53
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 82.5
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 82.42
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 82.41
PRK09376416 rho transcription termination factor Rho; Provisio 82.14
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 81.98
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 81.96
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 81.87
TIGR00767415 rho transcription termination factor Rho. Members 81.6
PRK11773721 uvrD DNA-dependent helicase II; Provisional 81.39
PRK13851344 type IV secretion system protein VirB11; Provision 81.24
PRK08939306 primosomal protein DnaI; Reviewed 81.21
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 80.92
PRK06904472 replicative DNA helicase; Validated 80.77
PRK07004460 replicative DNA helicase; Provisional 80.75
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 80.74
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 80.66
KOG2028554 consensus ATPase related to the helicase subunit o 80.65
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 80.57
COG0593408 DnaA ATPase involved in DNA replication initiation 80.36
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 80.34
PRK06067234 flagellar accessory protein FlaH; Validated 80.27
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 80.24
PRK09401 1176 reverse gyrase; Reviewed 80.03
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-213  Score=1949.05  Aligned_cols=1091  Identities=69%  Similarity=1.042  Sum_probs=990.5

Q ss_pred             CCCcCCccccchHHHHHHHHHhhhhcccccccccCCCCCCcccCCCCCcccccccccccccCCCCcccCCCcccccCccc
Q 001155            2 TGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQI   81 (1136)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (1136)
                      +|++||+||||+|+||||||+|++|||+ +||||||+|+||++-..|++++++++|++++|+++++||++++|+++++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (1195)
T PLN03137         69 NCAPVNVQTLASPQIEKAWHALSSLSIN-NNYLRPGKTPPIDNGSTDLSSDVGQSTTKVSSSTGGSYYEHNHPHQNQREV  147 (1195)
T ss_pred             cccccchhhhcchHHHHHHHHHhhhhhh-hcccCCCCCCCccccccccccccccCcceeeccCCcccccccccchhhhhc
Confidence            6999999999999999999999999999 699999999999995569999999999999999999999999999999999


Q ss_pred             cccCCCCccccCCcccCCCccccccCcCCCCCcccccccccccccc-ccCCCCCccccccccchhhhhhhcCCChhhhhh
Q 001155           82 NFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFK-FSDGFGNHTTEAGQIDESAEVLANKIDDDEILE  160 (1136)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (1136)
                      +|+++++++|+|++++++|++   +++.+|++++|++|+++|+|++ ++++|.+|+++++|.+|+.++..|+||||||||
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (1195)
T PLN03137        148 SGTNSSFASFSSSSVGDDNAT---AEKVPRGNSEIRASVPNNTHSNGVEGSFIKNSAHTAQQKESREASLDEIDDDDILE  224 (1195)
T ss_pred             cCccccccccccccCCCCccc---hhhccCCccccccccccccccccccccccccccchhhhhhhhhcccccCChHHHHh
Confidence            999999999999999999999   9999999999999999999999 899999999999999999999999999999999


Q ss_pred             cCChhHHHHhhcccCCCCCCCcCCCCCCCCCCCCCCCCcccccCCChhhhcccccccccccCcchhHHHHHHHHHHHHHH
Q 001155          161 TIDVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAIS  240 (1136)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  240 (1136)
                      +|||||||||||||||||||++||||++|||+++++|++++|++||||||+||+||+||||||||..||++|||+|++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (1195)
T PLN03137        225 NIDVDQIVMEHYQSTCTPQPSVSKFPPITPTVDTFASRREEEQFLPPELCSNCSHGIKLGLCPEASTHVEQMKDMLLAIS  304 (1195)
T ss_pred             hccHHHHHHHhccccCCCCCccccCCCCCCCcccccccChhhccCCHHHHhhcccccceecCHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcccCccccc-ccccccCCCCccccCCCceecccccccc
Q 001155          241 NELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTT-RTYQYETPQPAVLKIDPIRFDTQVHLYN  319 (1136)
Q Consensus       241 ~~lld~~~~l~~~~~~~~r~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~l~f~~~~~l~~  319 (1136)
                      ++|||++.+|++++++++||++.+|.+||++||.+++|+++++++++++|. ..+++++|+.....++..+|+...|+.+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (1195)
T PLN03137        305 NELLDNAADLSPDQVEQLRQDRLQLKKQIQQLEIHIRDKERQKSQFSASTATRNFQYETPQSTNYKIDPMQTDAQVHLRN  384 (1195)
T ss_pred             HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhccccccccccCCCcccceeccccccccceeecC
Confidence            999999999999999999999999999999999999999999999999998 7899999999999999999999999999


Q ss_pred             cccccCC--CCCcccccccccccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCcchHHHHHHHHHhhCCCCCCHH
Q 001155          320 ESEGYGN--WNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPN  397 (1136)
Q Consensus       320 ~~~~~~p--~~s~r~~~~~~e~l~vp~~~~~~~~~~~~~i~i~~~~~~~~~~w~~~~fp~s~~l~~~lk~~fG~~~lrpi  397 (1136)
                      +.+.|..  |+.++..+.+.+.+.+...|+.+.++.+..+.+.+.+....+.|....|||+..+...++++|||..|||+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~  464 (1195)
T PLN03137        385 EQGRYEKDNWNTPRDSFSSVDRYGISSGPVEREPYVPKFIDVTYTEGSNDKKWSSRNFPWTKKLEVNNKKVFGNHSFRPN  464 (1195)
T ss_pred             CCCcccccccCCcccchhhhhhhcccCCCcccCccccccceeeeecCCCCccccccCCCchHHHHHHHHHHcCCCCCCHH
Confidence            9999966  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 001155          398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILR  477 (1136)
Q Consensus       398 Q~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~  477 (1136)
                      |.++|++++.|+|+|++||||+|||+||+||++...+.+|||+|+++||+||+..+...|+++..++++....++..++.
T Consensus       465 Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr  544 (1195)
T PLN03137        465 QREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQ  544 (1195)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEee
Q 001155          478 ELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTA  557 (1136)
Q Consensus       478 ~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSA  557 (1136)
                      .+....+.++|||+|||+|...+.+.+.+..+.....+.+|||||||||++|||+||++|+.|..++..+|.+|+++|||
T Consensus       545 ~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTA  624 (1195)
T PLN03137        545 ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTA  624 (1195)
T ss_pred             HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEe
Confidence            77655578999999999998766677777666655669999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHhcCcceEEecccCCCCchhhh--------HHHHHHHHHh------ccccc-chhhHHHHHHHHhhcC
Q 001155          558 TATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD--------CEKVAERLQV------GLSYG-HFFLLKEFYVVSLECG  622 (1136)
Q Consensus       558 T~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~--------~e~lae~L~~------~l~~~-~~~~~~~~~~~l~~~g  622 (1136)
                      |++..++.++.+.|++..+.++..+++|||++..        .+.+...+..      .+.|. .......+...+...|
T Consensus       625 TAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G  704 (1195)
T PLN03137        625 TATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG  704 (1195)
T ss_pred             cCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC
Confidence            9999999999999999999999999999998732        2333344332      12222 2233456667777899


Q ss_pred             CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEe
Q 001155          623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY  702 (1136)
Q Consensus       623 ~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~  702 (1136)
                      +.+..|||||+.++|..+++.|..|+++|||||++||||||+|+|++||||++|+|++.|+||+|||||+|.+|.|++||
T Consensus       705 ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly  784 (1195)
T PLN03137        705 HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY  784 (1195)
T ss_pred             CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHHHHhhhCCCCCCccccCCC
Q 001155          703 SYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTC  782 (1136)
Q Consensus       703 ~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ll~yFge~~~~~~C~~~C  782 (1136)
                      +..|+..+++||.++...++++..++.+  ..+..+..+...++|..|++||++...|||.+||.||||.|+...|+++|
T Consensus       785 s~~D~~~~~~lI~~~~~~~s~~~~~~~r--~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~~C~~~C  862 (1195)
T PLN03137        785 SYSDYIRVKHMISQGGVEQSPMAMGYNR--MASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNCKKTC  862 (1195)
T ss_pred             cHHHHHHHHHHHhccccccchhhhhhcc--cchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCccCCCCCC
Confidence            9999999999998776655555444432  12234456777899999999999877999999999999998777898789


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhcccccccccCCcccCCHHHHHHHHHHHHH
Q 001155          783 DNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVI  862 (1136)
Q Consensus       783 DnC~~~~~~~~~d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~~~G~gk~~s~~~~~~li~~l~~  862 (1136)
                      |||......++.|+|.+|+++++||.+++++||.++++|+|||+++++|.+++|+++++||.||++++.+|++||++|+.
T Consensus       863 DnC~~~~~~~~~D~T~~Aq~~ls~V~~~~~~fg~~~iidvlrGs~~~~i~~~~~d~l~~~G~gk~~s~~~~~~li~~Li~  942 (1195)
T PLN03137        863 DNCSSSKSLIDKDVTEIARQLVELVKLTGERFSSAHILEVYRGSLNQYVKKHRHETLSLHGAGKHLSKGEASRILHYLVT  942 (1195)
T ss_pred             CCCCCCCcccccccHHHHHHHHHHHHHhccCcchhheehhhhccccHHHHHhCcccccccCccccCCHHHHHHHHHHHHH
Confidence            99999887667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhhhhhcccCCCceeeEEeeccccccccccCceeEEEeccccccccccCCCCCCCcccccccCCCCCCCCCCCCCCC
Q 001155          863 EDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQ  942 (1136)
Q Consensus       863 ~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  942 (1136)
                      +|||.++..+++.||.++++|++++.+++.+|+|..+|.|++|...+..+..+..+++++++..+.+...+......  .
T Consensus       943 ~g~L~~~~~~~~~y~~~~~~L~l~~~ka~~vL~g~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 1020 (1195)
T PLN03137        943 EDILAEDVKKSDLYGSVSSLLKVNESKAYKLFSGGQTIIMRFPSSVKASKPSKFEATPAKGPLTSGKQSTLPMATPA--Q 1020 (1195)
T ss_pred             cCCceeeccccccCCccceEEEeChHHHHHHhCCCceEEEecccccccccccccccccccccccccccccccccccc--c
Confidence            99999987666779988889999987799999999999999875433333333333444433221111111000000  1


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Q 001155          943 NEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIEST 1022 (1136)
Q Consensus       943 ~e~d~~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~ 1022 (1136)
                      .+.+.++++.||++|+.||+++|++.++++|||+||+|+||++||..+|.|.++|++|+|||+.|+++||++||++|++|
T Consensus      1021 ~~~~~~~d~~Lfe~Lr~lR~elA~e~~~~vppyvIFsD~TL~eIA~~~P~T~~eLl~I~GVG~~KlekYG~~fL~vI~~~ 1100 (1195)
T PLN03137       1021 PPVDLNLSAILYTALRKLRTALVKEAGDGVMAYHIFGNATLQQISKRIPRTKEELLEINGLGKAKVSKYGDRLLETIEST 1100 (1195)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhhhcCCCCeEEECHHHHHHHHHHCCCCHHHHhcCCCccHHHHHHHHHHHHHHHHHH
Confidence            11133456889999999999999983358999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCCCCCCCCCccccccCccCCCCCCCCCCCcccchhhhhhhhhhhcccccceecccCCC-CCCcccccCCC
Q 001155         1023 IKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEP-DSYECVDDLDF 1101 (1136)
Q Consensus      1023 ~~e~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 1101 (1136)
                      +.||+.+..+++++|+++++.||||+++..+  |+++||||+++|+|||||++|+||+++|+++++++ ++++|=||+||
T Consensus      1101 ~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1178 (1195)
T PLN03137       1101 INEYYKTDKNSSSSNDSPDSGKRRRDENINP--NVAEDDDFTKSTSQSKKKTVKNKNKGVEHGNSRETDRRNQCDDDLDF 1178 (1195)
T ss_pred             HHHhcCCcccCCCCCCCchhhhhcccccCCC--CcccccccccccchhHHHHHhcccCcccccccccccccccccccccc
Confidence            9999999999999999999999999988666  89999999999999999999999999999999999 88888444444


Q ss_pred             C
Q 001155         1102 D 1102 (1136)
Q Consensus      1102 ~ 1102 (1136)
                      +
T Consensus      1179 ~ 1179 (1195)
T PLN03137       1179 K 1179 (1195)
T ss_pred             c
Confidence            4

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00570 HRDC: HRDC domain Bloom syndrome Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>smart00341 HRDC Helicase and RNase D C-terminal Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK13897 type IV secretion system component VirD4; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK13850 type IV secretion system protein VirD4; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK13822 conjugal transfer coupling protein TraG; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13876 conjugal transfer coupling protein TraG; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1136
2v1x_A591 Crystal Structure Of Human Recq-Like Dna Helicase L 1e-102
1oyy_A523 Structure Of The Recq Catalytic Core Bound To Atp-G 3e-79
1oyw_A523 Structure Of The Recq Catalytic Core Length = 523 3e-75
2rhf_A77 D. Radiodurans Recq Hrdc Domain 3 Length = 77 2e-08
1hv8_A367 Crystal Structure Of A Dead Box Protein From The Hy 2e-06
3sqw_A579 Structure Of Mss116p (Nte Deletion) Bound To Ssrna 1e-05
3sqx_A512 Structure Of Mss116p (Nte And C-Tail Double Deletio 1e-05
3i5x_A563 Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len 1e-05
4db4_A256 Mss116p Dead-Box Helicase Domain 2 Bound To A Chima 3e-05
4db2_C257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 3e-05
4db2_A257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 3e-05
2j0u_B374 The Crystal Structure Of Eif4aiii-Barentsz Complex 6e-05
2hyi_C413 Structure Of The Human Exon Junction Complex With A 7e-05
2j0u_A374 The Crystal Structure Of Eif4aiii-Barentsz Complex 7e-05
2xb2_A411 Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar 7e-05
2j0q_A410 The Crystal Structure Of The Exon Junction Complex 8e-05
2hxy_A391 Crystal Structure Of Human Apo-Eif4aiii Length = 39 8e-05
2p6r_A702 Crystal Structure Of Superfamily 2 Helicase Hel308 1e-04
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 2e-04
1wud_A89 E. Coli Recq Hrdc Domain Length = 89 5e-04
3i32_A300 Dimeric Structure Of A Hera Helicase Fragment Inclu 7e-04
3eaq_A212 Novel Dimerization Motif In The Dead Box Rna Helica 7e-04
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 294/534 (55%), Gaps = 46/534 (8%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
           S+   W+  DFPW+ K++   + VF    FRP Q E IN TM+G +VF++MPTGGGKSL 
Sbjct: 16  SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC 75
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
           YQLPAL   G TLVI PL+SL++DQ+M L Q  I AT L+ +      + +  E+ +   
Sbjct: 76  YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS 135
Query: 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
           + KL+YVTPEK+AKS + + +LE         RI +DE HC SQWGHDFRPDY+ LGILK
Sbjct: 136 ELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK 195
Query: 545 QKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDC-----------E 593
           ++FPN  +          V  D  + L +  C  F  SFNRPNL+ +            E
Sbjct: 196 RQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIE 255
Query: 594 KVAERL------QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSK 646
            + + +      Q G+ Y       E   VSL+  G  A  YH +++P  +  V ++WS 
Sbjct: 256 DIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA 315
Query: 647 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
           +EI ++ ATVAFGMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD  ++ C+LYY + D
Sbjct: 316 NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 375
Query: 707 FIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQL 766
             R+  M+                  + N G+      + L  MVSYC+N   CRR+L  
Sbjct: 376 IFRISSMVV-----------------MENVGQ------QKLYEMVSYCQNISKCRRVLMA 412
Query: 767 VHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGS 826
            HF E ++S  C K CDNC K  +F  K++T+  + L++++K   +       L++    
Sbjct: 413 QHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSW 472
Query: 827 LNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVS 880
           + +   K R   +        L + +  +I+ H +I+ +L E+   +  Y ++S
Sbjct: 473 MGKGAAKLRVAGV----VAPTLPREDLEKIIAHFLIQQYLKEDYSFT-AYATIS 521
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 Back     alignment and structure
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 Back     alignment and structure
>pdb|2RHF|A Chain A, D. Radiodurans Recq Hrdc Domain 3 Length = 77 Back     alignment and structure
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Back     alignment and structure
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 Back     alignment and structure
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 Back     alignment and structure
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 Back     alignment and structure
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 Back     alignment and structure
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 Back     alignment and structure
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 Back     alignment and structure
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 Back     alignment and structure
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure
>pdb|1WUD|A Chain A, E. Coli Recq Hrdc Domain Length = 89 Back     alignment and structure
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 Back     alignment and structure
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1136
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 0.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 0.0
2rrd_A101 BLM HRDC domain, HRDC domain from bloom syndrome p 4e-18
2kv2_A85 Bloom syndrome protein; HRDC domain, disease mutat 5e-18
2dgz_A113 Werner syndrome protein variant; HRDC domain, stru 2e-17
2rhf_A77 DNA helicase RECQ; HRDC, D. radiodurans, ATP-bindi 4e-17
2e1f_A103 Werner syndrome ATP-dependent helicase; HRDC domai 2e-16
3aaf_A134 Werner syndrome ATP-dependent helicase; helix-turn 3e-16
1wud_A89 ATP-dependent DNA helicase RECQ; DNA-binding domai 4e-16
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 4e-13
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 4e-10
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
3b6e_A216 Interferon-induced helicase C domain-containing P; 1e-08
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 8e-08
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-04
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 9e-07
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 1e-06
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 8e-06
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 3e-05
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 4e-05
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 9e-05
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 1e-04
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 1e-04
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 1e-04
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 2e-04
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 2e-04
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 2e-04
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 3e-04
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 3e-04
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 3e-04
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 4e-04
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 4e-04
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 Back     alignment and structure
 Score =  737 bits (1904), Expect = 0.0
 Identities = 207/606 (34%), Positives = 306/606 (50%), Gaps = 92/606 (15%)

Query: 359 VNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTG 418
            +    S+   W+  DFPW+ K++   + VF    FRP Q E IN TM+G +VF++MPTG
Sbjct: 10  ASNEYDSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTG 69

Query: 419 GGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRE 478
           GGKSL YQLPAL   G TLVI PL+SL++DQ+M L Q  I AT L+ +      + +  E
Sbjct: 70  GGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAE 129

Query: 479 LNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQ 538
           + +   + KL+YVTPEK+AKS + + +LE         RI +DE HC SQWGHDFRPDY+
Sbjct: 130 MVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYK 189

Query: 539 GLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW--------- 589
            LGILK++FPN  ++ LTATAT  V  D  + L +  C  F  SFNRPNL+         
Sbjct: 190 ALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSN 249

Query: 590 ----------------------------MDCEKVAERLQVGLSYGHFFLLKEFYVVSLEC 621
                                        D E+V   LQ                     
Sbjct: 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQ-------------------NL 290

Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
           G  A  YH +++P  +  V ++WS +EI ++ ATVAFGMGI+KPDVRFVIHHS+ KS+E 
Sbjct: 291 GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMEN 350

Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
           Y+QE GRAGRD  ++ C+LYY + D  R+  M+                           
Sbjct: 351 YYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME-----------------------N 387

Query: 742 TNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAK 801
              + L  MVSYC+N   CRR+L   HF E ++S  C K CDNC K  +F  K++T+  +
Sbjct: 388 VGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCR 447

Query: 802 KLVELVKL---TGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILR 858
            L++++K      ++ +   +++ + G     ++               L + +  +I+ 
Sbjct: 448 DLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGV-------VAPTLPREDLEKIIA 500

Query: 859 HLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDV 918
           H +I+ +L E+   +    +  S LK+   KA+ L      + ++   +  ++  ++S  
Sbjct: 501 HFLIQQYLKEDYSFTA--YATISYLKIGP-KANLLNNEAHAITMQVTKSTQNSFRAESSQ 557

Query: 919 TPAKGS 924
           T     
Sbjct: 558 TCHSEQ 563
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 Back     alignment and structure
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1 Length = 113 Back     alignment and structure
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans} Length = 77 Back     alignment and structure
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A Length = 103 Back     alignment and structure
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A Length = 134 Back     alignment and structure
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1 Length = 89 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1136
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.98
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.97
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.97
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.97
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.96
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.96
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.96
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.96
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.96
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.96
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.96
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.96
3h1t_A590 Type I site-specific restriction-modification syst 99.96
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.95
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.95
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.94
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.94
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.93
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.93
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.92
3jux_A822 Protein translocase subunit SECA; protein transloc 99.92
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.92
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.91
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.91
3bor_A237 Human initiation factor 4A-II; translation initiat 99.91
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.91
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.91
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.91
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.91
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.91
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.91
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.9
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.9
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.89
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.88
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.87
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.82
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.8
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.76
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.75
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.75
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.74
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.74
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.73
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.72
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.71
2e1f_A103 Werner syndrome ATP-dependent helicase; HRDC domai 99.71
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.71
2dgz_A113 Werner syndrome protein variant; HRDC domain, stru 99.71
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.7
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.69
2kv2_A85 Bloom syndrome protein; HRDC domain, disease mutat 99.69
2rrd_A101 BLM HRDC domain, HRDC domain from bloom syndrome p 99.69
2rhf_A77 DNA helicase RECQ; HRDC, D. radiodurans, ATP-bindi 99.68
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.68
1wud_A89 ATP-dependent DNA helicase RECQ; DNA-binding domai 99.66
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.65
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.45
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.6
3aaf_A134 Werner syndrome ATP-dependent helicase; helix-turn 99.44
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.4
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.26
3saf_A428 Exosome component 10; exoribonuclease, RNA exosome 98.94
2hbj_A410 Exosome complex exonuclease RRP6; RNA metabolism, 98.91
1yt3_A375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 98.85
3cym_A440 Uncharacterized protein BAD_0989; structural genom 98.5
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 97.66
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.56
1d8b_A81 SGS1 RECQ helicase; five helices, three-helical bu 97.52
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.38
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.14
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.13
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 95.98
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 94.54
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 93.55
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 93.52
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 93.18
2chg_A226 Replication factor C small subunit; DNA-binding pr 92.24
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 92.05
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 91.75
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 91.67
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 91.62
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 91.56
2r6a_A454 DNAB helicase, replicative helicase; replication, 91.55
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 90.52
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 90.38
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 89.74
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 89.56
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 89.52
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 89.47
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 89.24
2v1u_A387 Cell division control protein 6 homolog; DNA repli 89.1
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 88.97
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 88.93
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 88.89
2kjq_A149 DNAA-related protein; solution structure, NESG, st 88.35
2cvh_A220 DNA repair and recombination protein RADB; filamen 88.32
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 87.95
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 87.84
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 87.84
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 87.79
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 87.62
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 87.47
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 87.09
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 87.01
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 86.94
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 86.68
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 86.55
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 86.5
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 86.34
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 86.29
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 86.23
3bos_A242 Putative DNA replication factor; P-loop containing 86.2
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 86.16
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 86.14
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 86.04
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 85.9
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 85.79
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 85.62
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 85.58
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 85.06
2z43_A324 DNA repair and recombination protein RADA; archaea 85.02
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 84.56
3co5_A143 Putative two-component system transcriptional RES 84.09
1u94_A356 RECA protein, recombinase A; homologous recombinat 83.94
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 83.91
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 83.51
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 83.32
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 83.18
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 83.14
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 82.97
1xp8_A366 RECA protein, recombinase A; recombination, radior 81.99
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 81.92
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 81.86
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 81.58
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 81.37
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 81.3
3pvs_A447 Replication-associated recombination protein A; ma 81.23
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 80.66
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 80.03
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
Probab=100.00  E-value=9.7e-79  Score=744.10  Aligned_cols=511  Identities=40%  Similarity=0.710  Sum_probs=444.8

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhH
Q 001155          367 DQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLI  446 (1136)
Q Consensus       367 ~~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~  446 (1136)
                      ...|....++|++.+.+.|+++|||..|||+|.++|+.++.|+|+|++||||+|||+||++|++...+++|||+|+++||
T Consensus        18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~   97 (591)
T 2v1x_A           18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLM   97 (591)
T ss_dssp             GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHH
T ss_pred             hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHH
Confidence            47899889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155          447 QDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV  526 (1136)
Q Consensus       447 ~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l  526 (1136)
                      .||+..|.+.|+++..++|+....+....+..+....+.++|+|+|||+|..+..+...+........+++||||||||+
T Consensus        98 ~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~i  177 (591)
T 2v1x_A           98 EDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCC  177 (591)
T ss_dssp             HHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGG
T ss_pred             HHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccc
Confidence            99999999999999999999998887777766643346899999999999754456665655555667999999999999


Q ss_pred             cccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhh-----------hHHHH
Q 001155          527 SQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWM-----------DCEKV  595 (1136)
Q Consensus       527 s~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~-----------~~e~l  595 (1136)
                      ++|||+||+.|..|..+...+|++|+++||||+++.+..++...|++..+..+..++.++|+..           ....+
T Consensus       178 s~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l  257 (591)
T 2v1x_A          178 SQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDI  257 (591)
T ss_dssp             STTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998862           12334


Q ss_pred             HHHHHh------cc-cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCcc
Q 001155          596 AERLQV------GL-SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVR  668 (1136)
Q Consensus       596 ae~L~~------~l-~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~  668 (1136)
                      .+.+..      .+ ..........+...+...|+.+..|||+|+..+|..+++.|.+|+++|||||++|+||||+|+|+
T Consensus       258 ~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~  337 (591)
T 2v1x_A          258 VKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVR  337 (591)
T ss_dssp             HHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEE
T ss_pred             HHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCccccc
Confidence            444432      12 22233456677777888899999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHH
Q 001155          669 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL  748 (1136)
Q Consensus       669 ~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~  748 (1136)
                      +||||++|+|++.|+||+|||||+|.+|.|++||++.|...+..++....                       ...+++.
T Consensus       338 ~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~~-----------------------~~~~~l~  394 (591)
T 2v1x_A          338 FVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN-----------------------VGQQKLY  394 (591)
T ss_dssp             EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTST-----------------------THHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhhh-----------------------hhHHHHH
Confidence            99999999999999999999999999999999999999999998875310                       1245688


Q ss_pred             HHHHHHHhcHHHHHHHHHhhhCCCCCCccccCCCCCCCCCCcccccchhHHHHHHHHHHHH---hCCCCChhhhhHhhhc
Q 001155          749 RMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKL---TGQQFSSSHILEVFRG  825 (1136)
Q Consensus       749 ~mv~yc~~~~~CRR~~ll~yFge~~~~~~C~~~CDnC~~~~~~~~~d~t~~a~~~l~~v~~---~~~~~~~~~~~~~lrG  825 (1136)
                      .|+.||++...|||..+++||||.++...|+++||||.........|+|.+|++++++|.+   .+++||..+++|+|+|
T Consensus       395 ~~~~~~~~~~~Crr~~ll~~f~e~~~~~~c~~~Cd~C~~~~~~~~~d~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~g  474 (591)
T 2v1x_A          395 EMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMG  474 (591)
T ss_dssp             HHHHHHTCSSSCHHHHHHHHHTCCC---CCCSCBHHHHCCCCEEEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTT
T ss_pred             HHHHHHhcccccHHHHHHHHcCCCCCccccCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHhcCCcccHHHHHHHHhC
Confidence            9999999778999999999999998777898899999988766678999999999999987   7999999999999999


Q ss_pred             cchhHHhhcccccccccCCcccCCHHHHHHHHHHHHHhcchhhhhhcccCCCceeeEEeeccccccccccCceeEEEecc
Q 001155          826 SLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFP  905 (1136)
Q Consensus       826 s~~~~v~~~~~~~~~~~G~gk~~s~~~~~~li~~l~~~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p  905 (1136)
                      ++++++..++++       |+++++.+|++|+++|+.+|||.++... +.|+. ..+|++++ +++.++.|..+|.|++|
T Consensus       475 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~  544 (591)
T 2v1x_A          475 KGAAKLRVAGVV-------APTLPREDLEKIIAHFLIQQYLKEDYSF-TAYAT-ISYLKIGP-KANLLNNEAHAITMQVT  544 (591)
T ss_dssp             CSCGGGCCTTCC-------CCSCCHHHHHHHHHHHHHTTSEEEEEEE-CSSCE-EEEEEECG-GGGGGGSTTCCCEEEEE
T ss_pred             CCchHHHhcCCC-------cCcCCHHHHHHHHHHHHHcCCcEEeccc-CCCce-eEEeeECH-HHHHHhcCCceEEEEec
Confidence            999888766665       7999999999999999999999987543 24663 34688885 68899999999999997


Q ss_pred             ccccc
Q 001155          906 SAINS  910 (1136)
Q Consensus       906 ~~~k~  910 (1136)
                      ...+.
T Consensus       545 ~~~~~  549 (591)
T 2v1x_A          545 KSTQN  549 (591)
T ss_dssp             C----
T ss_pred             CCCCc
Confidence            65443
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens} Back     alignment and structure
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1 Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1 Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1136
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 2e-36
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 1e-23
d1oywa1110 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding 2e-20
d1oywa3200 c.37.1.19 (A:207-406) RecQ helicase domain {Escher 3e-20
d2axla1144 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent h 3e-18
d1wuda177 a.60.8.1 (A:530-606) HRDC domain from RecQ helicas 4e-16
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 2e-15
d2e1fa194 a.60.8.1 (A:1142-1235) Werner syndrome ATP-depende 3e-14
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 4e-14
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 1e-12
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 4e-12
d2hbka196 a.60.8.4 (A:421-516) Exosome complex exonuclease R 5e-12
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 5e-12
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 4e-11
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 2e-09
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 4e-09
d1yt3a1101 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia c 5e-09
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 9e-09
d2j0sa2168 c.37.1.19 (A:244-411) Probable ATP-dependent RNA h 3e-08
d1t5la2181 c.37.1.19 (A:415-595) Nucleotide excision repair e 9e-08
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 2e-07
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 8e-07
d2cpra1113 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 2e-06
d1gm5a4206 c.37.1.19 (A:550-755) RecG helicase domain {Thermo 2e-06
d2rb4a1168 c.37.1.19 (A:307-474) ATP-dependent RNA helicase D 5e-06
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 2e-05
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 2e-05
d1s2ma2171 c.37.1.19 (A:252-422) Putative ATP-dependent RNA h 5e-04
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 0.001
d2eyqa3233 c.37.1.19 (A:546-778) Transcription-repair couplin 0.002
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 0.002
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

 Score =  134 bits (338), Expect = 2e-36
 Identities = 83/194 (42%), Positives = 121/194 (62%), Gaps = 7/194 (3%)

Query: 386 KKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSL 445
           ++ FG   FRP Q EII+  +SG D  V+MPTGGGKSL YQ+PAL+  G+T+V+SPL+SL
Sbjct: 18  QETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISL 77

Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
           ++DQ+  L    + A  L+      +Q E++        + +LLY+ PE      ++L  
Sbjct: 78  MKDQVDQLQANGVAAACLNSTQTREQQLEVMT--GCRTGQIRLLYIAPE-----RLMLDN 130

Query: 506 LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKE 565
                A      + +DEAHC+SQWGHDFRP+Y  LG L+Q+FP  P +ALTATA  + ++
Sbjct: 131 FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQ 190

Query: 566 DVVQALGLVNCIIF 579
           D+V+ LGL + +I 
Sbjct: 191 DIVRLLGLNDPLIQ 204
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase WRN {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} Length = 77 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Length = 101 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Length = 206 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 233 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1136
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.97
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.96
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.95
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.93
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.93
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.93
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.92
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.91
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.91
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.91
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.9
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.89
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.84
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.84
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.8
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.8
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.78
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.77
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.77
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.76
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.75
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.74
d2e1fa194 Werner syndrome ATP-dependent helicase, WRN {Human 99.74
d1wuda177 HRDC domain from RecQ helicase {Escherichia coli [ 99.72
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.72
d1oywa1110 DNA helicase RecQ DNA-binding domain {Escherichia 99.66
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.62
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.61
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.6
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.55
d2axla1144 Werner syndrome ATP-dependent helicase WRN {Human 99.53
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.51
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.51
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.51
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.49
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.48
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.43
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.31
d2hbka196 Exosome complex exonuclease RRP6 domain {Baker's y 99.3
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.28
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.27
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.25
d1yt3a1101 Ribonuclease D {Escherichia coli [TaxId: 562]} 99.12
d2cpra1113 Exosome component 10, EXOSC10 {Human (Homo sapiens 99.02
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.88
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.88
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.74
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.59
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.53
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.29
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.18
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.12
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 96.57
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.19
d2qy9a2211 GTPase domain of the signal recognition particle r 95.71
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 95.69
d1vmaa2213 GTPase domain of the signal recognition particle r 95.54
d1okkd2207 GTPase domain of the signal recognition particle r 95.43
d1ls1a2207 GTPase domain of the signal sequence recognition p 95.28
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 94.01
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 93.91
d1j8yf2211 GTPase domain of the signal sequence recognition p 93.88
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 93.15
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 92.13
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 91.89
d1d8ba_81 HRDC domain from RecQ helicase {Baker's yeast (Sac 91.27
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 89.82
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 89.48
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 89.44
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 89.29
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 88.78
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 88.44
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 88.12
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 88.0
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 87.75
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 86.83
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 86.31
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 85.81
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 85.05
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 84.84
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 84.69
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 84.44
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 84.33
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 82.15
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 81.9
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 81.15
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 81.1
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 80.53
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 80.42
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.9e-31  Score=278.36  Aligned_cols=160  Identities=37%  Similarity=0.652  Sum_probs=138.8

Q ss_pred             hhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcc
Q 001155          609 FLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR  688 (1136)
Q Consensus       609 ~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGR  688 (1136)
                      ..+..+...+...|+.+..|||+|+..+|..+++.|.+|+++|||||++++||||+|+|++||||++|.++++|+||+||
T Consensus        41 ~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR  120 (200)
T d1oywa3          41 AKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR  120 (200)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTT
T ss_pred             hhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhh
Confidence            34455566666889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHHHHhh
Q 001155          689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVH  768 (1136)
Q Consensus       689 AGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ll~y  768 (1136)
                      |||+|.+|.|++|+++.|...+++++++....                 +..+...+.+..|..|++. ..|||.+|++|
T Consensus       121 ~gR~g~~g~ai~~~~~~d~~~l~~~i~~~~~~-----------------~~~~~~~~~~~~m~~~~~~-~~Crr~~ll~~  182 (200)
T d1oywa3         121 AGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG-----------------QLQDIERHKLNAMGAFAEA-QTCRRLVLLNY  182 (200)
T ss_dssp             SCTTSSCEEEEEEECHHHHHHHHHHHHTSCCS-----------------HHHHHHHHHHHHHHHHHTC-SSCHHHHHHHH
T ss_pred             hhcCCCCceEEEecCHHHHHHHHhhhhccccc-----------------cchhhhHHHHHHHHHHHhc-hhhHHHHHHHH
Confidence            99999999999999999999999998764321                 2233344567899999986 57999999999


Q ss_pred             hCCCCCCccccCCCCCCCCC
Q 001155          769 FGEKFDSAHCKKTCDNCSKI  788 (1136)
Q Consensus       769 Fge~~~~~~C~~~CDnC~~~  788 (1136)
                      |||... ..|+ +||+|.++
T Consensus       183 fge~~~-~~C~-~CD~C~~p  200 (200)
T d1oywa3         183 FGEGRQ-EPCG-NCDICLDP  200 (200)
T ss_dssp             TTCCCC-SCCS-CBHHHHSC
T ss_pred             cCCCCC-CCCC-CCCCCCCC
Confidence            999754 4575 89999653
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase WRN {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1d8ba_ a.60.8.1 (A:) HRDC domain from RecQ helicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure