Citrus Sinensis ID: 001387

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------109
MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
ccEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEccccEEEEEccccEEEEEEEEccccEEEEEEEccccccccEEEEEEcccEEEEEEEEcccccEEEEEEcccccccccccccccEEEEcccccEEEEEEcccEEEEEEccccccccccEEEccccEEEEEEEEEccccccEEEEEEEcccccEEEEEEEEEcccccEEEccccccccccccccccccccccccEEEEEEcEEEEEccccccccccccccEEEEEEEEccccEEEEEcccccEEEEEEEEcccEEEEEEEEEEccccccEEEEEEcccEEEEEEcccccccEEEccccccccccEEEEEEEccccccccccccccccccccEEEEEEcccccccEEEEEEccEEEEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEEcccccEEEEEcccEEEEEEcccccEEEccccccccEEEEEEEcccEEEEEEcccEEEEEEEcccEEEEEEEcccccEEEEEEEcccccccccccEEEEEEEcccEEEEEEccccccEEEEccccccccEEEEEEEEEccEEEEEEEcccEEEEEEEccccccccccEEEEcccccEEEEEEccccccEEEEcccccEEEEEcccEEEEEEccccccccccccccccccccEEEEEccEEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEEccccccccccccEEEEEcccccEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEEEcccEEEEEEEEEcccEEEEcccccEEEEEEEcEEEEEEEEEcccccccEEcEEEEEccEEEEEEEEEccEEEEEEccccEEEEEEEccccEEEEEEcccccccccEEEEEccccEEEEcccccEEEEEEcccccccccccccEEEEEEEcccccEEEEcccccccccccccccccEEEEEEEccEEEEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHccc
cccEEEEEEccccccHHEEEEEccccccccEEEEEcccEEEEEEccccccEEEEEEcEEEEEEEHEHcccccccccEEEEEEcccEEEEEEEcccccEEEEEEcccccccccEEcccccEEEEcccccEEEEEEEccEEEEEEcccccccccccccEcccccEEEEEEEEcccccEEEEEEEcccccccccccEEEcccccEEEcccccccccccccEEEEccccccEEEEEEccEEEEEccccccccccccccccccccccccccEEEEEcccccEEEEEEEEccccEEEEEEEEccccccHHHEEEEcccEEEEEEEccccEEEEEccccccccccEEEEEccccccccEEEEEEEcccccccEEEEEEcccccccHHEEEccccEEEEEEcccccccEEEEEEcccccccccEEEEEEcccEEEEEEccccEEEEEccccccccccEEEEEEcccccEEEEccccEEEEEcccccEEEccccccccEEEEEEEcccEEEEEEcccEEEEEEEccccEEEEEEEEcccEEEEEEcccccccccccEEEEEEEccccEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEcccEEEEEEEEccccccccccEEEcccccEEEEEEEEcccEEEEEEccccEEEEEcccEEEEEcccHHHHHcccccccHHccccEEEEEccEEEEEEEHHHHHcEEEEccccccccEEEEcccccEEEEEEEcccccccccEEEEEEEEccccccEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEEccccccccccEEEEEEEcccEEEEEEEEcccccHHHHHHHccEEEEEEccEEEEEEEEcccccHHHHHHHHHccccEEEEEEEEcccEEEEEccHHEEEEEEEccccccEEEEEccccccEEEEEEEEccccEEEEcccccEEEEEccccccccccccHHHHEEEEEHHcHHHHEEEcEEEEEccccccccccEEEEEEEccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHcc
MSIWNYVVtahkptnvthscvgnftspqeLNLIIAKCTRIeihlltpqglqpmldvpiygriatlelfrphgeaqdFLFIATERYKFCVLQWDAESSELITRAMGdvsdrigrptdngqigiidpdcrliglhlydglfkvipfdnkgqLKEAFNIRLEELQVLDIKflygcakpTIVVLYQDNKDARHVKTYEVALkdkdfvegpwsqnnldngadllipvppplcgvliigeeTIVYCSanafkaipirpsitkaygrvdadgsryllgDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGssygdsqliklnlqpdakgSYVEVLERYVNLGPIVDFCVVDlerqgqgqvvtcsgaykdgslriVRNGIGINEQASVELQGIKGMwslrsstddpfdtFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELrnewksppgysvnvATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIScldinpigenpsysqIAAVGMWTDISVRIfslpdlnlitkehlggeiiprSVLLCAFEGISYLLCALGDGHLLNFLLnmktgeltdrkkvslgtqpitlrtfsskntthvfaasdrptviyssnkkllysnvnlkevshmcpfnsaafpdslaiakegeltigtiddIQKLHirsiplgehprrichqeqSRTFAICSLknqscaeeSEMHFVRLLDDQTFEfistypldtfeygCSILscsfsddsnvyycvgtayvlpeeneptkgRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIldddiylgaennfnlftvrknsegatdeergrlevvgeyhlgefvnrfrhgslvmrlpdsdvgqiptvIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKgvgglnheQWRSFnnekktvdaknfldgDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
MSIWNYVVTahkptnvthscVGNFTSPQELNLIIAKCTRIEIHLLtpqglqpmlDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMgdvsdrigrptdngqigiiDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVlyqdnkdaRHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVtcsgaykdgsLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKtgeltdrkkvslgtqpitlrtfsskntthvfaasdrptviyssnKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYvlpeeneptKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLftvrknsegatdeergrleVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGglnheqwrsfnnekktvdaknfldgDLIESFLDLSRTRMDEISKTMNVSVEELCKRveeltrlh
MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSRYllgdhagllhllVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLedeleeteieGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
**IWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILA*************GFCSQTQTLFCHDAIYNQLVQVTSGSVRLV***************GYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRK**********GRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRT***************************
*SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRH*************QIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
*SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRL*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFxxxxxxxxxxxxxxxxxxxxxGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1088 2.2.26 [Sep-21-2011]
Q9M0V31088 DNA damage-binding protei yes no 1.0 1.0 0.920 0.0
Q6QNU41090 DNA damage-binding protei N/A no 1.0 0.998 0.925 0.0
Q6E7D11095 DNA damage-binding protei N/A no 1.0 0.993 0.921 0.0
O495521088 DNA damage-binding protei no no 1.0 1.0 0.890 0.0
Q3U1J41140 DNA damage-binding protei yes no 0.990 0.945 0.530 0.0
A1A4K31140 DNA damage-binding protei yes no 0.990 0.945 0.530 0.0
Q165311140 DNA damage-binding protei yes no 0.990 0.945 0.529 0.0
P331941140 DNA damage-binding protei N/A no 0.990 0.945 0.528 0.0
Q5R6491140 DNA damage-binding protei yes no 0.990 0.945 0.528 0.0
Q805F91140 DNA damage-binding protei yes no 0.990 0.945 0.527 0.0
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1 Back     alignment and function desciption
 Score = 2081 bits (5393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1001/1088 (92%), Positives = 1056/1088 (97%)

Query: 1    MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
            MS WNYVVTAHKPT+VTHSCVGNFTSPQELNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1    MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 61   RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI 120
            RIATLELFRPHGEAQDFLFIATERYKFCVLQWD ESSELITRAMGDVSDRIGRPTDNGQI
Sbjct: 61   RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120

Query: 121  GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL 180
            GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL+GCAKPTI VL
Sbjct: 121  GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL 180

Query: 181  YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
            YQDNKDARHVKTYEV+LKDKDFVEGPWSQN+LDNGADLLIPVPPPLCGVLIIGEETIVYC
Sbjct: 181  YQDNKDARHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYC 240

Query: 241  SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET 300
            SA+AFKAIPIRPSITKAYGRVD DGSRYLLGDHAG++HLLVITHEKEKVTGLKIELLGET
Sbjct: 241  SASAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTGLKIELLGET 300

Query: 301  SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360
            SIASTISYLDNAVV++GSSYGDSQL+KLNL PDAKGSYVEVLERY+NLGPIVDFCVVDLE
Sbjct: 301  SIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLE 360

Query: 361  RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS 420
            RQGQGQVVTCSGA+KDGSLR+VRNGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVS
Sbjct: 361  RQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS 420

Query: 421  FISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
            FISETRILAMNLEDELEETEIEGF SQ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR
Sbjct: 421  FISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR 480

Query: 481  NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 540
            +EW +P G++VNVATANASQVLLATGGGHLVYLEIGDG LTEV+HA LEYE+SCLDINPI
Sbjct: 481  DEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPI 540

Query: 541  GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600
            G+NP+YSQ+AAVGMWTDISVRIFSLP+L LITKE LGGEIIPRSVLLCAFEGISYLLCAL
Sbjct: 541  GDNPNYSQLAAVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCAL 600

Query: 601  GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
            GDGHLLNF ++  TG+L DRKKVSLGTQPITLRTFSSK+ THVFAASDRPTVIYSSNKKL
Sbjct: 601  GDGHLLNFQMDTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKL 660

Query: 661  LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720
            LYSNVNLKEVSHMCPFNSAAFPDSLAIA+EGELTIGTIDDIQKLHIR+IPLGEH RRICH
Sbjct: 661  LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICH 720

Query: 721  QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS 780
            QEQ+RTF ICSL NQS +EESEMHFVRLLDDQTFEF+STYPLD+FEYGCSILSCSF++D 
Sbjct: 721  QEQTRTFGICSLGNQSNSEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDK 780

Query: 781  NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN 840
            NVYYCVGTAYVLPEENEPTKGRILVFIVEDG+LQLIAEKETKGAVYSLNAFNGKLLAAIN
Sbjct: 781  NVYYCVGTAYVLPEENEPTKGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAIN 840

Query: 841  QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA 900
            QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGA
Sbjct: 841  QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGA 900

Query: 901  IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG 960
            IEERARDYNANWMSAVEILDDDIYLGAENNFNL TV+KNSEGATDEERGRLEVVGEYHLG
Sbjct: 901  IEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLG 960

Query: 961  EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVI 1020
            EFVNRFRHGSLVMRLPDS++GQIPTVIFGTVNGVIGVIASLP EQY FLEKLQ++LRKVI
Sbjct: 961  EFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVI 1020

Query: 1021 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
            KGVGGL+HEQWRSFNNEK+T +A+NFLDGDLIESFLDLSR +M++ISK+MNV VEELCKR
Sbjct: 1021 KGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKR 1080

Query: 1081 VEELTRLH 1088
            VEELTRLH
Sbjct: 1081 VEELTRLH 1088
Component of light signal transduction machinery. Involved in repression of photomorphogenesis in darkness by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes (E2s). Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5, HYH and LAF1. Plays a role in DNA repair by forming with DDB2 the UV-damaged DNA-binding protein complex (UV-DDB). Component of the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1 Back     alignment and function description
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1 Back     alignment and function description
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2 SV=2 Back     alignment and function description
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2 Back     alignment and function description
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1 Back     alignment and function description
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1 Back     alignment and function description
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1 Back     alignment and function description
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1088
2254439901089 PREDICTED: DNA damage-binding protein 1 1.0 0.999 0.957 0.0
2240610511088 predicted protein [Populus trichocarpa] 1.0 1.0 0.949 0.0
3565126361089 PREDICTED: DNA damage-binding protein 1a 1.0 0.999 0.939 0.0
3565254011089 PREDICTED: DNA damage-binding protein 1- 1.0 0.999 0.936 0.0
2978097431088 UV-damaged DNA-binding protein 1A [Arabi 1.0 1.0 0.925 0.0
3122834571088 unnamed protein product [Thellungiella h 1.0 1.0 0.925 0.0
2254439921068 PREDICTED: DNA damage-binding protein 1 0.980 0.999 0.938 0.0
152355771088 DNA damage-binding protein 1a [Arabidops 1.0 1.0 0.920 0.0
3505370011090 DNA damage-binding protein 1 [Solanum ly 1.0 0.998 0.925 0.0
559763921095 RecName: Full=DNA damage-binding protein 1.0 0.993 0.921 0.0
>gi|225443990|ref|XP_002280735.1| PREDICTED: DNA damage-binding protein 1 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2144 bits (5554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1043/1089 (95%), Positives = 1071/1089 (98%), Gaps = 1/1089 (0%)

Query: 1    MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
            MS+WNYVVTAHKPTNVTHSCVGNFT PQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1    MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 61   RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI 120
            RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAE+SE+ITRAMGDVSDRIGRPTDNGQI
Sbjct: 61   RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAENSEVITRAMGDVSDRIGRPTDNGQI 120

Query: 121  GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL 180
            GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGC+KPTIVVL
Sbjct: 121  GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL 180

Query: 181  YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
            YQDNKDARHVKTYEVALKDKDFVEGPW+QNNLDNGADLLIPVPPPLCGVLIIGEETIVYC
Sbjct: 181  YQDNKDARHVKTYEVALKDKDFVEGPWAQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240

Query: 241  SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET 300
            SA+AFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
Sbjct: 241  SASAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET 300

Query: 301  SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360
            SIASTISYLDNA VY+GSSYGDSQLIK++LQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
Sbjct: 301  SIASTISYLDNAFVYVGSSYGDSQLIKIHLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360

Query: 361  RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS 420
            RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDP DTFLVVS
Sbjct: 361  RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPHDTFLVVS 420

Query: 421  FISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
            FISETRILAMNLEDELEETEIEGFCSQ QTLFCHDA+Y+QLVQVTS SVRLV STSRELR
Sbjct: 421  FISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVYDQLVQVTSSSVRLVGSTSRELR 480

Query: 481  NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 540
            NEWK+P GYSVNVATANA+QVLLATGGGHLVYLEIGDG LTEVKHAQLEY+ISCLDINPI
Sbjct: 481  NEWKAPSGYSVNVATANATQVLLATGGGHLVYLEIGDGTLTEVKHAQLEYDISCLDINPI 540

Query: 541  GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600
            GENP++SQ+AAVGMWTDISVRIFSLPDLNLITKE+LGGEIIPRSVLLC+FEGI YLLCAL
Sbjct: 541  GENPNFSQLAAVGMWTDISVRIFSLPDLNLITKEYLGGEIIPRSVLLCSFEGIPYLLCAL 600

Query: 601  GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
            GDGHLLNFLLNM TGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
Sbjct: 601  GDGHLLNFLLNMSTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660

Query: 661  LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720
            LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEG+LTIGTIDDIQKLHIRSIPLGEH RRICH
Sbjct: 661  LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGDLTIGTIDDIQKLHIRSIPLGEHARRICH 720

Query: 721  QEQSRTFAICSLK-NQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDD 779
            QEQSRTFAICSLK NQS  E+SEMHF+RLLDDQTFEFISTYPLDTFEYGCSILSCSFSDD
Sbjct: 721  QEQSRTFAICSLKYNQSSTEDSEMHFIRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDD 780

Query: 780  SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI 839
            SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI
Sbjct: 781  SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI 840

Query: 840  NQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG 899
            NQKIQLYKWMLRDDGTRELQSE GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
Sbjct: 841  NQKIQLYKWMLRDDGTRELQSESGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG 900

Query: 900  AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHL 959
            AIEERARDYNANWMSAVEILDDDIYLGAENNFN+FTVRKNSEGATDEERGRLEVVGEYHL
Sbjct: 901  AIEERARDYNANWMSAVEILDDDIYLGAENNFNIFTVRKNSEGATDEERGRLEVVGEYHL 960

Query: 960  GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKV 1019
            GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPH+QY+FLEKLQ NLRKV
Sbjct: 961  GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYVFLEKLQANLRKV 1020

Query: 1020 IKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCK 1079
            IKGVGGL+HEQWRSFNNEKKTVDAKNFLDGDLIE+FLDL+RTRMDEISK M VSVEELCK
Sbjct: 1021 IKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIETFLDLNRTRMDEISKAMAVSVEELCK 1080

Query: 1080 RVEELTRLH 1088
            RVEELTRLH
Sbjct: 1081 RVEELTRLH 1089

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061051|ref|XP_002300334.1| predicted protein [Populus trichocarpa] gi|222847592|gb|EEE85139.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512636|ref|XP_003525024.1| PREDICTED: DNA damage-binding protein 1a-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356525401|ref|XP_003531313.1| PREDICTED: DNA damage-binding protein 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297809743|ref|XP_002872755.1| UV-damaged DNA-binding protein 1A [Arabidopsis lyrata subsp. lyrata] gi|297318592|gb|EFH49014.1| UV-damaged DNA-binding protein 1A [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|312283457|dbj|BAJ34594.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|225443992|ref|XP_002280744.1| PREDICTED: DNA damage-binding protein 1 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15235577|ref|NP_192451.1| DNA damage-binding protein 1a [Arabidopsis thaliana] gi|55976605|sp|Q9M0V3.1|DDB1A_ARATH RecName: Full=DNA damage-binding protein 1a; AltName: Full=UV-damaged DNA-binding protein 1a; Short=DDB1a gi|7267302|emb|CAB81084.1| UV-damaged DNA binding factor-like protein [Arabidopsis thaliana] gi|25054828|gb|AAN71904.1| putative UV-damaged DNA binding factor [Arabidopsis thaliana] gi|332657117|gb|AEE82517.1| DNA damage-binding protein 1a [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|350537001|ref|NP_001234275.1| DNA damage-binding protein 1 [Solanum lycopersicum] gi|350539125|ref|NP_001233864.1| UV damaged DNA binding protein 1 [Solanum lycopersicum] gi|55976440|sp|Q6QNU4.1|DDB1_SOLLC RecName: Full=DNA damage-binding protein 1; AltName: Full=High pigmentation protein 1; AltName: Full=UV-damaged DNA-binding protein 1 gi|38455768|gb|AAR20885.1| UV damaged DNA binding protein 1 [Solanum lycopersicum] gi|42602165|gb|AAS21683.1| UV-damaged DNA binding protein 1 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|55976392|sp|Q6E7D1.1|DDB1_SOLCE RecName: Full=DNA damage-binding protein 1; AltName: Full=UV-damaged DNA-binding protein 1 gi|49484911|gb|AAT66742.1| UV-damaged DNA binding protein 1 [Solanum cheesmaniae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1088
TAIR|locus:21159091088 DDB1A "damaged DNA binding pro 1.0 1.0 0.901 0.0
TAIR|locus:21273681088 DDB1B "damaged DNA binding pro 1.0 1.0 0.871 0.0
UNIPROTKB|E2R9E31140 DDB1 "Uncharacterized protein" 0.666 0.635 0.550 1.2e-312
UNIPROTKB|A1A4K31140 DDB1 "DNA damage-binding prote 0.666 0.635 0.550 2e-312
MGI|MGI:12023841140 Ddb1 "damage specific DNA bind 0.666 0.635 0.550 2e-312
UNIPROTKB|F1RIE21140 DDB1 "Uncharacterized protein" 0.666 0.635 0.548 4.2e-312
UNIPROTKB|Q165311140 DDB1 "DNA damage-binding prote 0.666 0.635 0.548 5.4e-312
UNIPROTKB|Q6P6Z01140 ddb1 "DNA damage-binding prote 0.663 0.633 0.558 1.1e-311
UNIPROTKB|Q5R6491140 DDB1 "DNA damage-binding prote 0.666 0.635 0.548 1.4e-311
UNIPROTKB|P331941140 DDB1 "DNA damage-binding prote 0.666 0.635 0.547 2.3e-311
TAIR|locus:2115909 DDB1A "damaged DNA binding protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 5144 (1815.8 bits), Expect = 0., P = 0.
 Identities = 981/1088 (90%), Positives = 1034/1088 (95%)

Query:     1 MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60
             MS WNYVVTAHKPT+VTHSCVGNFTSPQELNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct:     1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query:    61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI 120
             RIATLELFRPHGEAQDFLFIATERYKFCVLQWD ESSELITRAMGDVSDRIGRPTDNGQI
Sbjct:    61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120

Query:   121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL 180
             GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL+GCAKPTI VL
Sbjct:   121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL 180

Query:   181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC 240
             YQDNKDARHVKTYEV+LKDKDFVEGPWSQN+LDNGADLLIPVPPPLCGVLIIGEETIVYC
Sbjct:   181 YQDNKDARHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYC 240

Query:   241 SANAFKAIPIRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKEKVTGLKIELLGET 300
             SA+AFKAIPIRPSITKAYGRVD DGSRY            VITHEKEKVTGLKIELLGET
Sbjct:   241 SASAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTGLKIELLGET 300

Query:   301 SIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE 360
             SIASTISYLDNAVV++GSSYGDSQL+KLNL PDAKGSYVEVLERY+NLGPIVDFCVVDLE
Sbjct:   301 SIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLE 360

Query:   361 RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS 420
             RQGQGQVVTCSGA+KDGSLR+VRNGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVS
Sbjct:   361 RQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS 420

Query:   421 FISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELR 480
             FISETRILAMNL          GF SQ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR
Sbjct:   421 FISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR 480

Query:   481 NEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI 540
             +EW +P G++VNVATANASQVLLATGGGHLVYLEIGDG LTEV+HA LEYE+SCLDINPI
Sbjct:   481 DEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPI 540

Query:   541 GENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL 600
             G+NP+YSQ+AAVGMWTDISVRIFSLP+L LITKE LGGEIIPRSVLLCAFEGISYLLCAL
Sbjct:   541 GDNPNYSQLAAVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCAL 600

Query:   601 GDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL 660
             GDGHLLNF ++  TG+L DRKKVSLGTQPITLRTFSSK+ THVFAASDRPTVIYSSNKKL
Sbjct:   601 GDGHLLNFQMDTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKL 660

Query:   661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICH 720
             LYSNVNLKEVSHMCPFNSAAFPDSLAIA+EGELTIGTIDDIQKLHIR+IPLGEH RRICH
Sbjct:   661 LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICH 720

Query:   721 QEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDS 780
             QEQ+RTF ICSL NQS +EESEMHFVRLLDDQTFEF+STYPLD+FEYGCSILSCSF++D 
Sbjct:   721 QEQTRTFGICSLGNQSNSEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDK 780

Query:   781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAIN 840
             NVYYCVGTAYVLPEENEPTKGRILVFIVEDG+LQLIAEKETKGAVYSLNAFNGKLLAAIN
Sbjct:   781 NVYYCVGTAYVLPEENEPTKGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAIN 840

Query:   841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA 900
             QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGA
Sbjct:   841 QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGA 900

Query:   901 IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG 960
             IEERARDYNANWMSAVEILDDDIYLGAENNFNL TV+KNSEGATDEERGRLEVVGEYHLG
Sbjct:   901 IEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLG 960

Query:   961 EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVI 1020
             EFVNRFRHGSLVMRLPDS++GQIPTVIFGTVNGVIGVIASLP EQY FLEKLQ++LRKVI
Sbjct:   961 EFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVI 1020

Query:  1021 KGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKR 1080
             KGVGGL+HEQWRSFNNEK+T +A+NFLDGDLIESFLDLSR +M++ISK+MNV VEELCKR
Sbjct:  1021 KGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKR 1080

Query:  1081 VEELTRLH 1088
             VEELTRLH
Sbjct:  1081 VEELTRLH 1088
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI
GO:0010100 "negative regulation of photomorphogenesis" evidence=IGI;RCA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0003002 "regionalization" evidence=RCA
GO:0006281 "DNA repair" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0009639 "response to red or far red light" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0033043 "regulation of organelle organization" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0048608 "reproductive structure development" evidence=RCA
TAIR|locus:2127368 DDB1B "damaged DNA binding protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9E3 DDB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A1A4K3 DDB1 "DNA damage-binding protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1202384 Ddb1 "damage specific DNA binding protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RIE2 DDB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q16531 DDB1 "DNA damage-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P6Z0 ddb1 "DNA damage-binding protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R649 DDB1 "DNA damage-binding protein 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|P33194 DDB1 "DNA damage-binding protein 1" [Chlorocebus aethiops (taxid:9534)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ESW0DDB1_RATNo assigned EC number0.52220.99080.9456yesno
Q6E7D1DDB1_SOLCENo assigned EC number0.92141.00.9936N/Ano
Q3U1J4DDB1_MOUSENo assigned EC number0.53010.99080.9456yesno
Q21554DDB1_CAEELNo assigned EC number0.34050.98060.9409yesno
Q6P6Z0DDB1_XENLANo assigned EC number0.53100.99080.9456N/Ano
Q5R649DDB1_PONABNo assigned EC number0.52830.99080.9456yesno
Q9XYZ5DDB1_DROMENo assigned EC number0.46820.98520.9403yesno
Q805F9DDB1_CHICKNo assigned EC number0.52750.99080.9456yesno
B0M0P5DDB1_DICDINo assigned EC number0.44440.98710.9093yesno
Q6QNU4DDB1_SOLLCNo assigned EC number0.92561.00.9981N/Ano
Q9M0V3DDB1A_ARATHNo assigned EC number0.92001.01.0yesno
P33194DDB1_CHLAENo assigned EC number0.52830.99080.9456N/Ano
O49552DDB1B_ARATHNo assigned EC number0.89061.01.0nono
Q16531DDB1_HUMANNo assigned EC number0.52920.99080.9456yesno
A1A4K3DDB1_BOVINNo assigned EC number0.53010.99080.9456yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1088
pfam10433513 pfam10433, MMS1_N, Mono-functional DNA-alkylating 1e-105
pfam03178318 pfam03178, CPSF_A, CPSF A subunit region 8e-89
COG51611319 COG5161, SFT1, Pre-mRNA cleavage and polyadenylati 4e-12
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term Back     alignment and domain information 
 Score =  340 bits (874), Expect = e-105
 Identities = 142/528 (26%), Positives = 235/528 (44%), Gaps = 78/528 (14%)

Query: 76  DFLFIATERYKFCVLQWDAESSELITRAM---GDVSDRIGRPTDNGQIGIIDPDCRLIGL 132
           D L ++ +  +   L +D E  +L         D+   + R   +G+   +DP  R + +
Sbjct: 1   DILVLSLDSGELLFLYYDEEPRQLFPEFYHSRRDLPSDVSRLEQSGRHIAVDPSGRAMAV 60

Query: 133 HLYDGLFKVIPFDNKGQLKEA--------------FNIRLEELQVLDIKFLYGCA----K 174
             Y G F V P     + +E                  RL +  +LD+ FLY  +     
Sbjct: 61  SAYSGFFGVYPLQRDNKTQELQSQMAEGPLSPIEEERFRLVDGDILDMCFLYPKSEDDDH 120

Query: 175 PTIVVLYQDNKDARHVKTYEVALKD-------KDFVEGPWSQNNLDNGADLLIPVPPPLC 227
             +++L  D +   H+K YE +  +       K+      ++  L +   LLIP+P P  
Sbjct: 121 VILLLLVFDEQRRLHLKLYEWSAGEGLNQVISKETRLPLPNEFELPS---LLIPLPKP-G 176

Query: 228 GVLIIGEETIVYCSAN-------AFKAIPI--RPSITKAYGRVDADGS------RYLLGD 272
             L++G  ++VY + +        F  + I    SI  A+ R D + S        LL  
Sbjct: 177 SFLVVGPTSLVYYTVHLIESAEYPFLRLEIGSDKSIWTAWARPDRNWSYNEKHDDILLAR 236

Query: 273 HAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDN----AVVYIGSSYGDSQLIKL 328
             G ++ L I+++ E V  + I  +G+ S+A   + LD      V+++ S  GD  L K+
Sbjct: 237 EDGRIYYLEISNDGE-VESITILGIGKCSVAIAFAILDKGNEGDVLFVASDTGDGGLFKI 295

Query: 329 NLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQG-------QVVTCSGAYKDGSLRI 381
           + + +        ++ + N  PI+DF VVD              ++ TCSG  K GSLR 
Sbjct: 296 SARDN-----PRCVQDFPNWAPILDFVVVDSGNSKNESQDPSQDRIFTCSGVGKRGSLRE 350

Query: 382 VRNGIGINEQASVE--LQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLE--DELE 437
           +R+GI       +E  L+GI+G+W L S ++     +L+VSF  ETR+L + ++  +E+E
Sbjct: 351 LRHGIEAEIGLVIEEELRGIRGLWLLPSGSNG--GYYLLVSFPFETRVLQLPVDPGEEVE 408

Query: 438 ETEIE-GFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATA 496
           E + + G     QTL   +     ++QVT  S+RL      ++ +EW       +  A+ 
Sbjct: 409 EVDEDSGLDLSVQTLAAGNTSDGVIIQVTENSIRLSDLELGKITDEW---SDEIITAASV 465

Query: 497 NASQVLLATGGGHLVYLEIGDGILTEVKHAQLEY----EISCLDINPI 540
           N S VL+A  G +LV L I  G+L       L      EI CLD  PI
Sbjct: 466 NGSLVLVAVAGRNLVSLRIYLGLLVIEDDGSLTLLDLGEILCLDYEPI 513

MMS1 is a protein that protects against replication-dependent DNA damage in Saccharomyces cerevisiae. MMS1 belongs to the DDB1 family of cullin 4 adaptors and the two proteins are homologous. MMS1 bridges the interaction of MMS22 and Crt10 with Cul8/Rtt101. Cul8/Rtt101 is a cullin protein involved in the regulation of DNA replication subsequent to DNA damage. The N-terminal region of MMS1 and the C-terminal of MMS22 are required for the the MMS1-MMS22 interaction. The human HIV-1 virion-associated protein Vpr assembles with DDB1 through interaction with DCAF1 (chromatin assembly factor) to form an E3 ubiquitin ligase that targets cellular substrates for proteasome-mediated degradation and subsequent G2 arrest. Length = 513
>gnl|CDD|217409 pfam03178, CPSF_A, CPSF A subunit region Back     alignment and domain information
>gnl|CDD|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1088
KOG18971096 consensus Damage-specific DNA binding complex, sub 100.0
KOG18961366 consensus mRNA cleavage and polyadenylation factor 100.0
KOG18981205 consensus Splicing factor 3b, subunit 3 [RNA proce 100.0
COG51611319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 100.0
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 100.0
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 100.0
KOG0318603 consensus WD40 repeat stress protein/actin interac 98.96
KOG2048691 consensus WD40 repeat protein [General function pr 98.9
KOG0318603 consensus WD40 repeat stress protein/actin interac 98.08
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 98.05
PRK11028330 6-phosphogluconolactonase; Provisional 97.98
KOG0291893 consensus WD40-repeat-containing subunit of the 18 97.94
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 97.94
KOG0319 775 consensus WD40-repeat-containing subunit of the 18 97.9
KOG2106626 consensus Uncharacterized conserved protein, conta 97.89
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 97.82
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.78
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.73
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 97.68
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 97.6
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.53
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.53
PRK11028330 6-phosphogluconolactonase; Provisional 97.37
KOG0647347 consensus mRNA export protein (contains WD40 repea 97.3
KOG1539 910 consensus WD repeat protein [General function pred 97.25
KOG2106626 consensus Uncharacterized conserved protein, conta 97.19
KOG1539 910 consensus WD repeat protein [General function pred 97.15
KOG2055514 consensus WD40 repeat protein [General function pr 97.14
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 97.09
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 97.07
KOG1274 933 consensus WD40 repeat protein [General function pr 97.02
KOG0310487 consensus Conserved WD40 repeat-containing protein 96.84
KOG2055514 consensus WD40 repeat protein [General function pr 96.76
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 96.7
PLN00181793 protein SPA1-RELATED; Provisional 96.64
KOG1273405 consensus WD40 repeat protein [General function pr 96.56
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 96.47
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 96.29
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 96.29
KOG0319775 consensus WD40-repeat-containing subunit of the 18 96.14
KOG0315311 consensus G-protein beta subunit-like protein (con 96.12
KOG0296399 consensus Angio-associated migratory cell protein 95.94
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 95.93
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 95.91
KOG0283712 consensus WD40 repeat-containing protein [Function 95.8
KOG2048691 consensus WD40 repeat protein [General function pr 95.75
KOG0282503 consensus mRNA splicing factor [Function unknown] 95.67
KOG2110391 consensus Uncharacterized conserved protein, conta 95.54
KOG2110391 consensus Uncharacterized conserved protein, conta 95.53
KOG0647347 consensus mRNA export protein (contains WD40 repea 95.5
KOG0278334 consensus Serine/threonine kinase receptor-associa 95.43
KOG0263707 consensus Transcription initiation factor TFIID, s 95.28
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 95.1
KOG0310487 consensus Conserved WD40 repeat-containing protein 95.09
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 95.09
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 94.95
KOG0294362 consensus WD40 repeat-containing protein [Function 94.92
KOG0283712 consensus WD40 repeat-containing protein [Function 94.91
KOG0282503 consensus mRNA splicing factor [Function unknown] 94.82
KOG2111346 consensus Uncharacterized conserved protein, conta 94.8
KOG1273405 consensus WD40 repeat protein [General function pr 94.78
PLN00181793 protein SPA1-RELATED; Provisional 94.74
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 94.73
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 94.49
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 94.37
KOG1407313 consensus WD40 repeat protein [Function unknown] 94.31
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 94.14
KOG2321703 consensus WD40 repeat protein [General function pr 94.06
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 93.84
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 93.73
PTZ00420 568 coronin; Provisional 93.58
KOG0645312 consensus WD40 repeat protein [General function pr 93.49
KOG0275508 consensus Conserved WD40 repeat-containing protein 93.32
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 93.2
KOG0289506 consensus mRNA splicing factor [General function p 93.12
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 92.98
KOG1274 933 consensus WD40 repeat protein [General function pr 92.73
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 92.73
KOG0640430 consensus mRNA cleavage stimulating factor complex 92.11
PF14727418 PHTB1_N: PTHB1 N-terminus 92.05
KOG0649325 consensus WD40 repeat protein [General function pr 91.84
KOG0315311 consensus G-protein beta subunit-like protein (con 91.75
KOG0289506 consensus mRNA splicing factor [General function p 91.75
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 91.72
KOG0299479 consensus U3 snoRNP-associated protein (contains W 91.67
KOG0646476 consensus WD40 repeat protein [General function pr 91.65
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 91.49
KOG0278334 consensus Serine/threonine kinase receptor-associa 91.32
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 91.18
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 90.95
KOG0772641 consensus Uncharacterized conserved protein, conta 90.73
KOG0299479 consensus U3 snoRNP-associated protein (contains W 90.7
KOG0266456 consensus WD40 repeat-containing protein [General 90.67
PF14727418 PHTB1_N: PTHB1 N-terminus 90.19
KOG0316307 consensus Conserved WD40 repeat-containing protein 90.03
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 89.78
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 89.56
KOG0646476 consensus WD40 repeat protein [General function pr 89.27
KOG3881412 consensus Uncharacterized conserved protein [Funct 89.13
KOG2321 703 consensus WD40 repeat protein [General function pr 88.95
KOG0316307 consensus Conserved WD40 repeat-containing protein 88.95
KOG0294362 consensus WD40 repeat-containing protein [Function 88.89
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 88.8
PTZ00421493 coronin; Provisional 88.77
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 88.65
KOG2111346 consensus Uncharacterized conserved protein, conta 88.63
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 87.99
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 87.97
KOG0288459 consensus WD40 repeat protein TipD [General functi 87.72
KOG0266456 consensus WD40 repeat-containing protein [General 87.71
KOG0313423 consensus Microtubule binding protein YTM1 (contai 87.28
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 87.07
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 87.04
KOG0284464 consensus Polyadenylation factor I complex, subuni 86.82
KOG2096420 consensus WD40 repeat protein [General function pr 86.31
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 85.36
KOG0279315 consensus G protein beta subunit-like protein [Sig 85.25
KOG18971096 consensus Damage-specific DNA binding complex, sub 84.97
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 84.41
KOG0640430 consensus mRNA cleavage stimulating factor complex 84.02
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 83.79
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 82.4
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 82.35
KOG15171387 consensus Guanine nucleotide binding protein MIP1 82.16
KOG0268433 consensus Sof1-like rRNA processing protein (conta 82.07
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 82.06
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 81.85
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 81.55
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 81.4
KOG0302440 consensus Ribosome Assembly protein [General funct 81.35
KOG0290364 consensus Conserved WD40 repeat-containing protein 80.53
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 80.2
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 80.06
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-185  Score=1558.91  Aligned_cols=1075  Identities=63%  Similarity=1.033  Sum_probs=1022.4

Q ss_pred             eEEEEEEeecCCceeEEEEEEecCCCcccEEEEcCCEEEEEEeCCCCeEEEEEEEeeeeEeEEeeeccCCCCccEEEEEe
Q 001387            3 IWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIAT   82 (1088)
Q Consensus         3 ~~~y~~t~~~~tav~~av~~~f~~~~~~~Lvv~k~~~le~y~~~~~~L~~~~~~~l~~~i~~i~~~r~~~~~~d~L~v~~   82 (1088)
                      +|.|++|+++||||.+|+.|||++++..+|+|||+|+||+|.++++||+.+.+.|+||+|..|+.+||++..+|+|+|.|
T Consensus         1 ~~~Y~vtaqkpT~V~~av~gnFts~e~~nlivAk~~~lei~~~~~~GLq~i~sv~ifg~I~~i~~fRp~g~~kD~LfV~t   80 (1096)
T KOG1897|consen    1 SMNYVVTAQKPTAVVTAVVGNFTSPENLNLIVAKGNRLEILLVEPNGLQPITSVPIFGTIATIALFRPPGSDKDYLFVAT   80 (1096)
T ss_pred             CeeEEEEecCCceEeEEEeecccCccceeeeeeccceEEEEeeccccceeeEeeccceeEEEEEeecCCCCCcceEEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCeEEEEEEeCCCCcEEEEEeeeccCCCCccCCCCCeEEECCCCCEEEEEecCCeEEEEeCCCC-----Cccccceecc
Q 001387           83 ERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNK-----GQLKEAFNIR  157 (1088)
Q Consensus        83 ~~~~~~il~~~~~~~~~~t~s~~~~~~~~~r~~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~~-----~~~~~~~~i~  157 (1088)
                      +++++++|+||....+.+|..+++..++.+|+.++|++++|||.+|.|+++.|+|+++++|+++.     +.....|++|
T Consensus        81 ~~~~~~iL~~d~~~~~vv~~a~~~v~dr~gr~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~r  160 (1096)
T KOG1897|consen   81 DSYRYFILEWDEESIQVVTRAHGDVSDRSGRPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVR  160 (1096)
T ss_pred             CcceEEEEEEccccceEEEEecccccccccccCCCceEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccc
Confidence            99999999999877789999999999888999999999999999999999999999999999886     5566789999


Q ss_pred             cCCceeEEEEeecCCCCcEEEEEEEecCCcceEEEEEEeccCCCeeeecccccccCCCCCEEEecCCCCCceEEEeCCeE
Q 001387          158 LEELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETI  237 (1088)
Q Consensus       158 l~~~~i~d~~fl~~~~~p~laiL~~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~liplp~~~~G~lv~~~~~i  237 (1088)
                      +++.+|.||+||++...|++|+||+|. ..+|+++|+++++++++.++.|+ .++..++..+||+|.|.||+||+|++.|
T Consensus       161 fdel~v~Di~fly~~s~pt~~vly~Ds-~~~Hv~~yelnl~~ke~~~~~w~-~~v~~~a~~li~VP~~~gGvlV~ge~~I  238 (1096)
T KOG1897|consen  161 FDELNVYDIKFLYGCSDPTLAVLYKDS-DGRHVKTYELNLRDKEFVKGPWS-NNVDNGASMLIPVPSPIGGVLVIGEEFI  238 (1096)
T ss_pred             cCcceEEEEEEEcCCCCCceEEEEEcC-CCcEEEEEEeccchhhccccccc-cccccCCceeeecCCCCceEEEEeeeEE
Confidence            999999999999999999999999999 88999999999999999999999 8999999999999999999999999999


Q ss_pred             EEEcCCceeeee---cCCceeeeeeEEecCCCEEEEEcCCcCeEEEEEEecCcEEee--EEEEEcCccccceEEEEecCC
Q 001387          238 VYCSANAFKAIP---IRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTG--LKIELLGETSIASTISYLDNA  312 (1088)
Q Consensus       238 ~y~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~~~~v~~--~~i~~~~~~~~~s~l~~l~~~  312 (1088)
                      +|+++..+.+++   .+++.+.||+.++.++.+||++|++|+||++.+...++++++  |+++++|++++++||++|++|
T Consensus       239 ~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng  318 (1096)
T KOG1897|consen  239 VYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG  318 (1096)
T ss_pred             EEeeCCceeEecccccCCceEEEcccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc
Confidence            999998877765   677889999999999999999999999999999988888887  899999999999999999999


Q ss_pred             eEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEEE
Q 001387          313 VVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQA  392 (1088)
Q Consensus       313 ~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~  392 (1088)
                      +||+||++|||+|+++..++|. ++|..++++++|+|||.||++.+.+++++++|++|||++|+|+||++|+||++++++
T Consensus       319 ~lFvGS~~gdSqLi~L~~e~d~-gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A  397 (1096)
T KOG1897|consen  319 VLFVGSRFGDSQLIKLNTEPDV-GSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELA  397 (1096)
T ss_pred             eEEEeccCCceeeEEccccCCC-CchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceee
Confidence            9999999999999999998876 888999999999999999999999989999999999999999999999999999999


Q ss_pred             eeeCCCcceEEEeecCCCCCCccEEEEEecCceEEEEecCCCceeeeeecceeccccceeeeecCCCeEEEEecCcEEEE
Q 001387          393 SVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLV  472 (1088)
Q Consensus       393 ~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt~~~i~l~  472 (1088)
                      +.++||++++|+++..-.++++.||++||+++|++|.++++  +|+.++++|.++++||+|+.+.++.++|||+++||++
T Consensus       398 ~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e--~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~  475 (1096)
T KOG1897|consen  398 SIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEE--VEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLV  475 (1096)
T ss_pred             EeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccc--eEEeccccccccCceEEEEccCCceEEEEecccEEEE
Confidence            99999999999999766778999999999999999999864  9999999999999999999998889999999999999


Q ss_pred             ecCCcceeeeeeCCCCCcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEEE
Q 001387          473 SSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAV  552 (1088)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~v  552 (1088)
                      +.+  .+.++|.+|.+..|..|+++..+++||.+++.+.|++++.+.+.+..+.+++.||+|+|++|+++++..+.+++|
T Consensus       476 ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aV  553 (1096)
T KOG1897|consen  476 SSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAV  553 (1096)
T ss_pred             cch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEE
Confidence            876  388999999998888999999999999988899999998877999999999999999999999887777889999


Q ss_pred             EEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecC-ceEEEEEeCCCcEEEEEEecCCCccccceeeecCcccee
Q 001387          553 GMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG-ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPIT  631 (1088)
Q Consensus       553 g~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~-~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~  631 (1088)
                      |+|.+-.+.+..+||+.++..+.++.+.+|||+++..+++ ..||+++++||.++.|.++..+|.+.+.|+..+|++|+.
T Consensus       554 G~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~  633 (1096)
T KOG1897|consen  554 GLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPIS  633 (1096)
T ss_pred             EeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcE
Confidence            9997777788888999998888888888999999999986 899999999999999999999999999999999999999


Q ss_pred             EEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeC
Q 001387          632 LRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPL  711 (1088)
Q Consensus       632 l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l  711 (1088)
                      |+.|.+.+.+++||++||||++|+.++++.|+|++.+.+..+|||++.++++++++++++.|.|+.+++.+++++|++|+
T Consensus       634 Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl  713 (1096)
T KOG1897|consen  634 LRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL  713 (1096)
T ss_pred             EEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC
Confidence            99998889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCeEEEecCCCEEEEEEeecCCC----cCcceeEEEEEEeCCCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEE
Q 001387          712 GEHPRRICHQEQSRTFAICSLKNQSC----AEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVG  787 (1088)
Q Consensus       712 ~~tp~~i~y~~~~~~~~v~~~~~~~~----~~~~~~s~l~lid~~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VG  787 (1088)
                      +++||||+|++.+.+|+|+|.+.+..    +++.+.++++++|++|+++++.++|+++|.++|+++++|.++...|++||
T Consensus       714 ~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG  793 (1096)
T KOG1897|consen  714 GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG  793 (1096)
T ss_pred             CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEE
Confidence            99999999999999999999987543    45778999999999999999999999999999999999999889999999


Q ss_pred             eeeeCCCCCCCcceEEEEEEEeC-CeEEEEEEEEecCceeEeccccCeEEEEECCEEEEEEeeeccCccccccccccccc
Q 001387          788 TAYVLPEENEPTKGRILVFIVED-GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHG  866 (1088)
Q Consensus       788 T~~~~~~e~~~~~Gri~v~~i~~-~kl~~~~~~~~~g~v~ai~~~~g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~  866 (1088)
                      |++..|+|.+|..|||++|+..+ ++|+++++++++|+|++++.|||+|++|+|+++++|+|.    .+++|...|....
T Consensus       794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t----~~~eLr~e~~~~~  869 (1096)
T KOG1897|consen  794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWT----TERELRIECNISN  869 (1096)
T ss_pred             EEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEcc----ccceehhhhcccC
Confidence            99999999999999999999997 899999999999999999999999999999999999994    2367877888888


Q ss_pred             ceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCceeEEEEEeeCceEEEEccCCcEEEEeeCCCCCCcc
Q 001387          867 HILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDE  946 (1088)
Q Consensus       867 ~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~  946 (1088)
                      +..+.++++.+|+|+|||+|+|+++++|+.+++.|+++|||..|+|+++++++++++++++|++||++++++|.++++++
T Consensus       870 ~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~  949 (1096)
T KOG1897|consen  870 PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDE  949 (1096)
T ss_pred             CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeEEEEEEcCCccceEEeeeeeecCCCCCCCCccEEEEEcccccEEEEEecChhHHHHHHHHHHHHHhccCCCCCC
Q 001387          947 ERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGL 1026 (1088)
Q Consensus       947 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~~l~~t~~G~i~~l~~l~~~~~~~L~~lq~~l~~~~~~~~gl 1026 (1088)
                      +++.|+..+.||+|+.|++|+.+++.++.+++.....++++|||.+|+||++..++++.+.+|..||++|++.++++||+
T Consensus       950 eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~sl~~d~~~fL~~Lq~~irk~i~s~ggl 1029 (1096)
T KOG1897|consen  950 ERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIVSLPQDWYDFLEELQRRIRKVIKSVGGL 1029 (1096)
T ss_pred             hhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEEecCcchhHHHHHHHHHHHHhhcccCCc
Confidence            99999999999999999999999999885555556678899999999999999999999999999999999999999999


Q ss_pred             CcccccccccccccCCCCceEehHHHHHHhcCCHHHHHHHHHhcCCC-----HHHHHHHHHHHhccC
Q 001387         1027 NHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS-----VEELCKRVEELTRLH 1088 (1088)
Q Consensus      1027 ~~~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~~~-----~~~i~~~l~~l~~~~ 1088 (1088)
                      +|..||+++.+.+..|++|||||||+|+|++|+++.+++|++++..+     ++||.+.+|||+|||
T Consensus      1030 sH~~yrsf~~e~~~~P~~gfIDGDLiEsfl~l~~~~~~~i~~~~~~~~~~~s~~el~k~vEel~rlh 1096 (1096)
T KOG1897|consen 1030 SHMDYRSFEFEKRTSPVKGFIDGDLIESFLDLSRSKMREIVRGLEHTESLASVQELLKIVEELTRLH 1096 (1096)
T ss_pred             chhhHhhhhcccccCCCcCcccchHHHhhhccCHHHHHHHHhhcccccccCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999765     999999999999999

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1088
4a0b_A1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 0.0
4a11_A1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 0.0
4a0a_A1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 0.0
3e0c_A1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 0.0
4e54_A1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 0.0
4a0l_A1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 0.0
3ei1_A1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 0.0
4a08_A1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 0.0
2b5l_A1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 0.0
3ei4_A1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 0.0
3i7h_A1143 Crystal Structure Of Ddb1 In Complex With The H-Box 0.0
2b5n_A323 Crystal Structure Of The Ddb1 Bpb Domain Length = 3 1e-97
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure 
Iteration: 1

 Score = 1176 bits (3043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1145 (51%), Positives = 783/1145 (68%), Gaps = 67/1145 (5%)
Query: 4    WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
            +NYVVTA KPT V     G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 22   YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 81
Query: 64   TLELFRPHGEAQDFLFIATERYKFCVLQW--DAESSELITRAMGDVSDRIGRPTDNGQIG 121
             +ELFRP GE++D LFI T +Y  C+L++    ES ++ITRA G+V DRIGRP++ G IG
Sbjct: 82   VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 141
Query: 122  IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
            IIDP+CR+IGL LYDGLFKVIP D   +  +AFNIRLEEL V+D+KFLYGC  PTI  +Y
Sbjct: 142  IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 201
Query: 182  QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
            QD +  RHVKTYEV+L++K+F +GPW Q N++  A ++I VP P  G +IIG+E+I Y +
Sbjct: 202  QDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPSPFGGAIIIGQESITYHN 260
Query: 242  ANAFKAIP---IRPSITKAYGRVDADGSRYXXXXXXXXXXXXVITHEKE-----KVTGLK 293
             + + AI    I+ S    + RVD +GSRY            ++  E++      +  L+
Sbjct: 261  GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 320
Query: 294  IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
            +ELLGETSIA  ++YLDN VV++GS  GDSQL+KLN+  + +GSYV  +E + NLGPIVD
Sbjct: 321  VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 380
Query: 354  FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
             CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS  +   
Sbjct: 381  MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 440
Query: 414  DTFLVVSFISETRILAMNLXXXXXXXXXXGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
            D  LV+SF+ +TR+L +N           GF    QT FC +  + QL+Q+TS SVRLVS
Sbjct: 441  DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 499
Query: 474  STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
               + L +EWK P   +++VA+ N+SQV++A G   L YL+I    L ++ H ++E+E++
Sbjct: 500  QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRA-LYYLQIHPQELRQISHTEMEHEVA 558
Query: 534  CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
            CLDI P+G++   S + A+G+WTDIS RI  LP   L+ KE LGGEIIPRS+L+  FE  
Sbjct: 559  CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 618
Query: 594  SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
             YLLCALGDG L  F LN++TG L+DRKKV+LGTQP  LRTF S +TT+VFA SDRPTVI
Sbjct: 619  HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 678
Query: 654  YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
            YSSN KL++SNVNLKEV++MCP NS  +PDSLA+A    LTIGTID+IQKLHIR++PL E
Sbjct: 679  YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 738
Query: 714  HPRRICHQEQSRTFAICSLK---------------------------------------N 734
             PR+IC+QE S+ F + S +                                        
Sbjct: 739  SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 798
Query: 735  QSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
             S  EE E+H + ++D  TFE +  +     EY  S++SC    D N Y+ VGTA V PE
Sbjct: 799  TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 858
Query: 795  ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
            E EP +GRI+VF   DGKLQ +AEKE KGAVYS+  FNGKLLA+IN  ++LY+W      
Sbjct: 859  EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE--- 915
Query: 855  TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
             +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK  EG  EE ARD+N NWMS
Sbjct: 916  -KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 974
Query: 915  AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
            AVEILDDD +LGAEN FNLF  +K+S   TDEER  L+ VG +HLGEFVN F HGSLVM+
Sbjct: 975  AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1034
Query: 975  -LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
             L ++      +V+FGTVNG+IG++ SL    Y  L  +Q  L KVIK VG + H  WRS
Sbjct: 1035 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1094
Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
            F+ E+KT  A  F+DGDLIESFLD+SR +M E+   +            + ++L K VEE
Sbjct: 1095 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1154
Query: 1084 LTRLH 1088
            LTR+H
Sbjct: 1155 LTRIH 1159
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1088
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
 Score =  969 bits (2505), Expect = 0.0
 Identities = 600/1145 (52%), Positives = 794/1145 (69%), Gaps = 67/1145 (5%)

Query: 4    WNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIA 63
            +NYVVTA KPT V     G+FTS ++LNL+IAK TR+EI+++T +GL+P+ +V +YG+IA
Sbjct: 21   YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIA 80

Query: 64   TLELFRPHGEAQDFLFIATERYKFCVLQWDAESS--ELITRAMGDVSDRIGRPTDNGQIG 121
             +ELFRP GE++D LFI T +Y  C+L++       ++ITRA G+V DRIGRP++ G IG
Sbjct: 81   VMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIG 140

Query: 122  IIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVLY 181
            IIDP+CR+IGL LYDGLFKVIP D   +  +AFNIRLEEL V+D+KFLYGC  PTI  +Y
Sbjct: 141  IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVY 200

Query: 182  QDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCS 241
            QD +  RHVKTYEV+L++K+F +GPW Q N++  A ++I VP P  G +IIG+E+I Y +
Sbjct: 201  QDPQG-RHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHN 259

Query: 242  ANAF---KAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLK 293
             + +       I+ S    + RVD +GSRYLLGD  G L +L++  E++      +  L+
Sbjct: 260  GDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLR 319

Query: 294  IELLGETSIASTISYLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVD 353
            +ELLGETSIA  ++YLDN VV++GS  GDSQL+KLN+  + +GSYV  +E + NLGPIVD
Sbjct: 320  VELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD 379

Query: 354  FCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPF 413
             CVVDLERQGQGQ+VTCSGA+K+GSLRI+RNGIGI+E AS++L GIKG+W LRS  +   
Sbjct: 380  MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET 439

Query: 414  DTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVS 473
            D  LV+SF+ +TR+L +N  +E+EETE+ GF    QT FC +  + QL+Q+TS SVRLVS
Sbjct: 440  DDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 498

Query: 474  STSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIS 533
               + L +EWK P   +++VA+ N+SQV++A G   L YL+I    L ++ H ++E+E++
Sbjct: 499  QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGR-ALYYLQIHPQELRQISHTEMEHEVA 557

Query: 534  CLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGI 593
            CLDI P+G++   S + A+G+WTDIS RI  LP   L+ KE LGGEIIPRS+L+  FE  
Sbjct: 558  CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESS 617

Query: 594  SYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVI 653
             YLLCALGDG L  F LN++TG L+DRKKV+LGTQP  LRTF S +TT+VFA SDRPTVI
Sbjct: 618  HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI 677

Query: 654  YSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE 713
            YSSN KL++SNVNLKEV++MCP NS  +PDSLA+A    LTIGTID+IQKLHIR++PL E
Sbjct: 678  YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYE 737

Query: 714  HPRRICHQEQSRTFAICSLKNQ-------------------------------------- 735
             PR+IC+QE S+ F + S + +                                      
Sbjct: 738  SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHE 797

Query: 736  -SCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPE 794
             S  EE E+H + ++D  TFE +  +     EY  S++SC    D N Y+ VGTA V PE
Sbjct: 798  TSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPE 857

Query: 795  ENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDG 854
            E EP +GRI+VF   DGKLQ +AEKE KGAVYS+  FNGKLLA+IN  ++LY+W      
Sbjct: 858  EAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEK-- 915

Query: 855  TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMS 914
              EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK  EG  EE ARD+N NWMS
Sbjct: 916  --ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 973

Query: 915  AVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 974
            AVEILDDD +LGAEN FNLF  +K+S   TDEER  L+ VG +HLGEFVN F HGSLVM+
Sbjct: 974  AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1033

Query: 975  LP-DSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 1033
               ++      +V+FGTVNG+IG++ SL    Y  L  +Q  L KVIK VG + H  WRS
Sbjct: 1034 NLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1093

Query: 1034 FNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN----------VSVEELCKRVEE 1083
            F+ E+KT  A  F+DGDLIESFLD+SR +M E+   +            + ++L K VEE
Sbjct: 1094 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1153

Query: 1084 LTRLH 1088
            LTR+H
Sbjct: 1154 LTRIH 1158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1088
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 100.0
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 99.07
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 98.76
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 98.75
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 98.71
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 98.61
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.56
2ymu_A577 WD-40 repeat protein; unknown function, two domain 98.31
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 98.24
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 98.2
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 98.16
2ymu_A577 WD-40 repeat protein; unknown function, two domain 98.16
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 98.08
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.08
4g56_B357 MGC81050 protein; protein arginine methyltransfera 98.02
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 98.01
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 97.99
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 97.98
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.95
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.94
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.94
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.93
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 97.92
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 97.91
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 97.91
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.88
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.88
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 97.85
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 97.83
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 97.83
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 97.83
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 97.82
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 97.8
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.79
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 97.77
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.74
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 97.74
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.73
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.73
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 97.68
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 97.65
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 97.65
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.62
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.61
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.61
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.56
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 97.56
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.54
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 97.53
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 97.52
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.52
3jrp_A379 Fusion protein of protein transport protein SEC13 97.52
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 97.49
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 97.49
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 97.48
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 97.47
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 97.46
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.45
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 97.43
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 97.43
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.4
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 97.35
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 97.33
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 97.33
4e54_B435 DNA damage-binding protein 2; beta barrel, double 97.33
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 97.32
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 97.31
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 97.3
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.3
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.28
3jrp_A379 Fusion protein of protein transport protein SEC13 97.26
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 97.25
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 97.23
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.22
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.18
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 97.17
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 97.15
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 97.14
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 97.13
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 97.09
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 97.04
4e54_B435 DNA damage-binding protein 2; beta barrel, double 97.04
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 96.99
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 96.98
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 96.98
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 96.97
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 96.9
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.9
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 96.89
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 96.89
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.86
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.85
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 96.85
4g56_B357 MGC81050 protein; protein arginine methyltransfera 96.84
3jro_A 753 Fusion protein of protein transport protein SEC13 96.79
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 96.73
3ow8_A321 WD repeat-containing protein 61; structural genomi 96.72
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 96.66
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 96.65
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 96.64
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.63
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 96.63
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 96.61
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.52
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 96.51
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 96.48
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 96.46
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 96.35
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 96.34
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.33
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 96.31
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 96.3
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 96.28
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 96.23
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 96.22
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 96.21
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 96.18
3jro_A 753 Fusion protein of protein transport protein SEC13 96.15
2pm7_B297 Protein transport protein SEC13, protein transport 96.12
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 95.92
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 95.9
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 95.85
2xyi_A430 Probable histone-binding protein CAF1; transcripti 95.82
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 95.81
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 95.8
2xyi_A430 Probable histone-binding protein CAF1; transcripti 95.75
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 95.66
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 95.58
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 95.46
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 95.44
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.38
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 95.26
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 95.18
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 95.02
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.02
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 94.98
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 94.83
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 94.83
2pm7_B297 Protein transport protein SEC13, protein transport 94.35
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 94.31
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 93.91
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 93.63
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 93.18
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 93.14
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 93.0
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 92.53
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 92.45
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 92.36
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 91.15
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 91.01
2j04_A 588 TAU60, YPL007P, hypothetical protein YPL007C; beta 90.18
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 90.02
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 89.63
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 89.62
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 89.16
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 88.34
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 88.17
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 87.7
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 86.88
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 86.84
3p5b_L400 Low density lipoprotein receptor variant; B-propel 86.43
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 85.61
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 85.59
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 85.36
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 84.48
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 83.64
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 82.58
2ece_A462 462AA long hypothetical selenium-binding protein; 81.91
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 80.52
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 80.42
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
Probab=100.00  E-value=6.6e-176  Score=1676.82  Aligned_cols=1080  Identities=56%  Similarity=0.954  Sum_probs=990.5

Q ss_pred             ceEEEEEEeecCCceeEEEEEEecCCCcccEEEEcCCEEEEEEeCCCCeEEEEEEEeeeeEeEEeeeccCCCCccEEEEE
Q 001387            2 SIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIA   81 (1088)
Q Consensus         2 ~~~~y~~t~~~~tav~~av~~~f~~~~~~~Lvv~k~~~le~y~~~~~~L~~~~~~~l~~~i~~i~~~r~~~~~~d~L~v~   81 (1088)
                      |+|+|++|+|+||+|+||+.|||++++.++|||||+|+||||++++++|+++.++++||+|++++++|++++.+|+|+|+
T Consensus        19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~~~Lvvak~~~Lel~~~~~~~L~~v~~~~l~G~I~~l~~~r~~g~~~D~L~v~   98 (1158)
T 3ei3_A           19 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFIL   98 (1158)
T ss_dssp             CCCEEEEEEECCCSCCEEEEECSSCSSCCEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEEEECCTTCSSCEEEEE
T ss_pred             ccEEEEEEeeCCChhhEEEEEEcCCCCccEEEEecCCEEEEEEEcccceEEEEEEEcccEEEEEEEEcCCCCCceEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCcCeEEEEEEeCCCC--cEEEEEeeeccCCCCccCCCCCeEEECCCCCEEEEEecCCeEEEEeCCCCCccccceecccC
Q 001387           82 TERYKFCVLQWDAESS--ELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLE  159 (1088)
Q Consensus        82 ~~~~~~~il~~~~~~~--~~~t~s~~~~~~~~~r~~~~~~~l~vdp~~r~~~~~~~~~~l~i~p~~~~~~~~~~~~i~l~  159 (1088)
                      |+++++++++||++.+  +++|.++++++++.+|+..+|++++|||+|||+++++|++.+.|+|+++.+....+++++++
T Consensus        99 td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~l~~~~~~l~  178 (1158)
T 3ei3_A           99 TAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE  178 (1158)
T ss_dssp             ETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTTCCCEEEECS
T ss_pred             eCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCcccccccccccc
Confidence            9999999999998744  56677788889888899999999999999999999999999999999875443467889999


Q ss_pred             CceeEEEEeecCCCCcEEEEEEEecCCcceEEEEEEeccCCCeeeecccccccCCCCCEEEecCCCCCceEEEeCCeEEE
Q 001387          160 ELQVLDIKFLYGCAKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVY  239 (1088)
Q Consensus       160 ~~~i~d~~fl~~~~~p~laiL~~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~lp~~~~~liplp~~~~G~lv~~~~~i~y  239 (1088)
                      +.+|+||+||+||++|+||+||+|.. .+++.+|+++++++...+..|+..++|+++++|||+|.|.||+||+|+|.|+|
T Consensus       179 ~~~v~d~~fL~g~~~P~~A~Ly~d~~-~~~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~~gGvlv~g~n~i~y  257 (1158)
T 3ei3_A          179 ELHVIDVKFLYGCQAPTICFVYQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITY  257 (1158)
T ss_dssp             CCCEEEEEECSSCSSCEEEEEEEETT-EEEEEEEEEETTTTEEEECSSCCEEECTTCCEEEECCTTTCCEEEECSSCEEE
T ss_pred             cceEEEEEEecCCCCcEEEEEEECCC-CCEEEEEEEEcCCCeeeecccccccCCCCCCEEEECCCCCceEEEEECCEEEE
Confidence            99999999999999999999999875 47999999999986566667988899999999999999999999999999999


Q ss_pred             EcCCceeeeec---CCceeeeeeEEecCCCEEEEEcCCcCeEEEEEEecCc-----EEeeEEEEEcCccccceEEEEecC
Q 001387          240 CSANAFKAIPI---RPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKE-----KVTGLKIELLGETSIASTISYLDN  311 (1088)
Q Consensus       240 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~~~-----~v~~~~i~~~~~~~~~s~l~~l~~  311 (1088)
                      +++++...++.   ++..++||+.++.++.++||++++|+||+|.+..|++     .|.++++++++++++|+||+++++
T Consensus       258 ~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~  337 (1158)
T 3ei3_A          258 HNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDN  337 (1158)
T ss_dssp             EETTEEEEECCGGGGGSCEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECST
T ss_pred             EcCCCceEEeccccCCceEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECC
Confidence            99887544433   2357899998887788999999999999999999875     699999999999999999999999


Q ss_pred             CeEEEeeecCCeEEEEEeeCCCCCCCcEEEEeeeccCCceeeeEEeccCCCCCceEEEEeeCCCCceEEEEecCCceeEE
Q 001387          312 AVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQ  391 (1088)
Q Consensus       312 ~~lf~gS~~gds~l~~~~~~~~~~~~~~~~~~~l~n~~Pi~D~~~~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~  391 (1088)
                      |+||+||++|||+|+|+...++++.+|++++|+++|||||.||++++..++++++|++|||.|++|+|+++|+|++++++
T Consensus       338 g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~  417 (1158)
T 3ei3_A          338 GVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEH  417 (1158)
T ss_dssp             TEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEE
T ss_pred             CEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEE
Confidence            99999999999999999987766678899999999999999999999877788999999999999999999999999999


Q ss_pred             EeeeCCCcceEEEeecCCCCCCccEEEEEecCceEEEEecCCCceeeeeecceeccccceeeeecCCCeEEEEecCcEEE
Q 001387          392 ASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRL  471 (1088)
Q Consensus       392 ~~~~l~~v~~iw~l~~~~~~~~~~~lilS~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Ti~~~~~~~~~ivQVt~~~i~l  471 (1088)
                      ++.++||++++|+++....+++|.||++|++++|+||+++++ +++|+++++|.++++||+|++++++.+||||+++||+
T Consensus       418 ~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irl  496 (1158)
T 3ei3_A          418 ASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRL  496 (1158)
T ss_dssp             EEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETT-EEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEE
T ss_pred             EeecCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCC-cccccccccccCCCCcEEEEEcCCCeEEEEecCEEEE
Confidence            999999999999999766677899999999999999999664 7999999999999999999999999999999999999


Q ss_pred             EecCCcceeeeeeCCCCCcEEEEEECCCEEEEEECCCeEEEEEEcCcEEEEEeeccCCceeEEEEeCCCCCCCCCccEEE
Q 001387          472 VSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAA  551 (1088)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~l~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~  551 (1088)
                      ++.+....+++|.+|.|.+|++|++++.+++++. +++++||+++++++.+..+.+++.+|+|+++.+.++++..+.+++
T Consensus       497 i~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~a  575 (1158)
T 3ei3_A          497 VSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCA  575 (1158)
T ss_dssp             EESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEE
T ss_pred             EECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEE
Confidence            9987656899999999999999999999999995 889999999988898888899999999999988877666789999


Q ss_pred             EEEecCCEEEEEECCCCCceEEecCCCCcCceeEEeeeecCceEEEEEeCCCcEEEEEEecCCCccccceeeecCcccee
Q 001387          552 VGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPIT  631 (1088)
Q Consensus       552 vg~w~~~~i~i~~l~~l~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~  631 (1088)
                      ||+|.|++++||++++++.++.+.++.+..|+|++++.+++.++|++|++||.+++|.++..+|++.+.|++.+|++|++
T Consensus       576 Vg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~  655 (1158)
T 3ei3_A          576 IGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTV  655 (1158)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCE
T ss_pred             EEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceE
Confidence            99999999999999999999999998777999999999988999999999999999999998899999999999999999


Q ss_pred             EEEEEeCCceEEEEecCCceEEEecCCcEEEeecccccceeeeccCCCCCCCeEEEEeCCeEEEEEEcCCCCeEEEEEeC
Q 001387          632 LRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPL  711 (1088)
Q Consensus       632 l~~~~~~~~~~v~~~~~~p~~i~~~~~~~~~~~l~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l  711 (1088)
                      |.++...+..+||++|++||++|.+++++.|+|++..++.++|+|++++|+++++++++++|+|+++++.++|++|+|||
T Consensus       656 L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL  735 (1158)
T 3ei3_A          656 LRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPL  735 (1158)
T ss_dssp             EEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEEC
T ss_pred             EEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeC
Confidence            99998777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCeEEEecCCCEEEEEEeecC---CC------------------------------------cCcceeEEEEEEeCC
Q 001387          712 GEHPRRICHQEQSRTFAICSLKNQ---SC------------------------------------AEESEMHFVRLLDDQ  752 (1088)
Q Consensus       712 ~~tp~~i~y~~~~~~~~v~~~~~~---~~------------------------------------~~~~~~s~l~lid~~  752 (1088)
                      ++||||++|||++++|+|++++.+   .+                                    +.+.+.++++++||.
T Consensus       736 ~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~  815 (1158)
T 3ei3_A          736 YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH  815 (1158)
T ss_dssp             SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT
T ss_pred             CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC
Confidence            999999999999999999997642   10                                    112478999999999


Q ss_pred             CceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEecccc
Q 001387          753 TFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFN  832 (1088)
Q Consensus       753 t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~~  832 (1088)
                      +|+++++++|+++|.++|++.|+|.+++++|++|||++..++|+.+++|||++|++.++||+++++++++|+|+|+++++
T Consensus       816 t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~  895 (1158)
T 3ei3_A          816 TFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN  895 (1158)
T ss_dssp             TCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET
T ss_pred             CCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC
Confidence            99999999999999999999999988778999999999988899999999999999999999999999999999999999


Q ss_pred             CeEEEEECCEEEEEEeeeccCcccccccccccccceEEEEEEEeCCEEEEEeccccEEEEEEeccCCeEEEEeccCCCce
Q 001387          833 GKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANW  912 (1088)
Q Consensus       833 g~Lv~~~g~~l~v~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~~~D~~~~~  912 (1088)
                      |+|++|+|++|++|+|..    ++.|...+.......++++++.||+|+|||+++|+++++|++++++|+++|||+.++|
T Consensus       896 g~Lla~ig~~l~vy~l~~----~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~  971 (1158)
T 3ei3_A          896 GKLLASINSTVRLYEWTT----EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW  971 (1158)
T ss_dssp             TEEEEEETTEEEEEEECT----TSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBC
T ss_pred             CEEEEEcCCEEEEEECCC----CceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccccc
Confidence            999999999999999842    1223322221122347789999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeCceEEEEccCCcEEEEeeCCCCCCcccccceeEEEEEEcCCccceEEeeeeeecCC-CCCCCCccEEEEEcc
Q 001387          913 MSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSDVGQIPTVIFGTV  991 (1088)
Q Consensus       913 v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~-~~~~~~~~~~l~~t~  991 (1088)
                      ++++++|++++++++|++|||+++++++++.++.++++|+..++||+|+.||+|+++++.+..+ +......+.++|+|.
T Consensus       972 vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~ 1051 (1158)
T 3ei3_A          972 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTV 1051 (1158)
T ss_dssp             EEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEET
T ss_pred             EEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEec
Confidence            9999999999999999999999999999888888889999999999999999999998876432 222335678999999


Q ss_pred             cccEEEEEecChhHHHHHHHHHHHHHhccCCCCCCCcccccccccccccCCCCceEehHHHHHHhcCCHHHHHHHHHhcC
Q 001387          992 NGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN 1071 (1088)
Q Consensus       992 ~G~i~~l~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~ 1071 (1088)
                      +|+||.+.|++++.|++|..||++|++..+++||++|++||+++++.+..+++|||||||||+|++|+.++|++||++++
T Consensus      1052 ~GsIg~l~pl~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~~~~~~~iDGdLle~fl~L~~~~q~~ia~~l~ 1131 (1158)
T 3ei3_A         1052 NGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQ 1131 (1158)
T ss_dssp             TSCEEEEEEECHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCEECCBSEEEHHHHHGGGGSCHHHHHHHCCCC-
T ss_pred             CCEEEEEEEcCHHHHHHHHHHHHHHHhhCCCCcCCCHHHhhCeecccccCCCCccCcHHHHHHHHcCCHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999876667889999999999999999999999999997


Q ss_pred             ----------CCHHHHHHHHHHHhccC
Q 001387         1072 ----------VSVEELCKRVEELTRLH 1088 (1088)
Q Consensus      1072 ----------~~~~~i~~~l~~l~~~~ 1088 (1088)
                                ++++||.|+||+|+|||
T Consensus      1132 ~~~~~~~~~~~t~~ei~k~~e~l~r~h 1158 (1158)
T 3ei3_A         1132 YDDGSGMKREATADDLIKVVEELTRIH 1158 (1158)
T ss_dssp             -----------CCHHHHHHHHHHGGGC
T ss_pred             ccccccccCCCCHHHHHHHHHHHhhcC
Confidence                      59999999999999999
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1088
d1qksa2432 b.70.2.1 (A:136-567) C-terminal (heme d1) domain o 0.003
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 Back     information, alignment and structure

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (89), Expect = 0.003
 Identities = 39/394 (9%), Positives = 102/394 (25%), Gaps = 60/394 (15%)

Query: 697  TIDDIQKLHIRSIPLGEHPRRICHQEQSRT-FAICSLKNQSCAEESEMHFVRLLDDQTFE 755
             + ++++     +   + P +  +       F++            +   + L+D  T+E
Sbjct: 3    GMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVT---------LRDAGQIALIDGSTYE 53

Query: 756  FISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQL 815
                      + G ++     S      + +G             G++ +  +   +   
Sbjct: 54   -----IKTVLDTGYAVHISRLSASGRYLFVIG-----------RDGKVNMIDLWMKEPTT 97

Query: 816  IAE----KETKGAVYSLN-AFNGKLLAAINQKIQLYKWMLRDDGTRELQSEC-------- 862
            +AE     E +    S    +  K   A       Y  M  +    +             
Sbjct: 98   VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 157

Query: 863  --GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 920
                   + A+         +V  + ++  +L+  + +    +        ++    +  
Sbjct: 158  EYHPEPRVAAILASHYRPEFIVN-VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216

Query: 921  DDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDV 980
               Y          T           +    ++V     G        G+  +      V
Sbjct: 217  SHRY--------FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV 268

Query: 981  GQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKT 1040
                 +     +  + +I + P        K+          +GG +       N++   
Sbjct: 269  WATSHM----GDDSVALIGTDPEGHPDNAWKIL----DSFPALGGGSLFIKTHPNSQYLY 320

Query: 1041 VDAKNFLDGDLIES--FLDLSRTRMDEISKTMNV 1072
            VDA    + ++  S    D+     D        
Sbjct: 321  VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 354

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1088
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.38
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 98.24
d1tbga_340 beta1-subunit of the signal-transducing G protein 98.14
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 98.05
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 98.0
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 97.94
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 97.89
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 97.83
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 97.7
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.64
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 97.34
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 97.32
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.28
d1tbga_340 beta1-subunit of the signal-transducing G protein 97.26
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 97.1
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 97.1
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 97.03
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 97.02
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.99
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 96.95
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 96.93
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 96.92
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 96.82
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 96.82
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 96.61
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 96.5
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 96.38
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 96.35
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 96.25
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 96.17
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 96.07
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 95.61
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 95.34
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 95.0
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 94.4
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.1
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 93.8
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 93.77
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 93.27
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 92.38
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 88.43
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 83.26
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=0.00045  Score=73.98  Aligned_cols=283  Identities=10%  Similarity=0.078  Sum_probs=156.8

Q ss_pred             EEEEeeccCCceeEEEEeCCCCCCCCCccEEEEEEecCCEEEEEECCCC---CceEE-ecCCCCcCceeEEeeeecCceE
Q 001387          520 LTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDL---NLITK-EHLGGEIIPRSVLLCAFEGISY  595 (1088)
Q Consensus       520 l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~w~~~~i~i~~l~~l---~~~~~-~~l~~~~~p~si~~~~~~~~~~  595 (1088)
                      ..++........|+|+++.+      .+.+++.| . +|.|+||++...   ..+.. .....+....++.+.+  +..+
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~------~g~~latg-~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~--dg~~  111 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISN------PTRHVYTG-G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCT  111 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECS------SSSEEEEE-C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSE
T ss_pred             ceEEEECCCCCcEEEEEECC------CCCEEEEE-E-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC--CCCE
Confidence            33444444567799999975      35677766 3 789999998642   22221 1122222345565543  4578


Q ss_pred             EEEEeCCCcEEEEEEecCCCccccceeeecCccceeEEEEEeCCceEEEEecCCceE-EEec-CCcEEE-eeccccccee
Q 001387          596 LLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV-IYSS-NKKLLY-SNVNLKEVSH  672 (1088)
Q Consensus       596 L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~-i~~~-~~~~~~-~~l~~~~i~~  672 (1088)
                      |++|..||.+..|.+...++.+.  ........++....+. .+...++..+....+ ++.- .++... .......+.+
T Consensus       112 l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~  188 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTPRIK--AELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC  188 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEE--EEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEeecccccccccccccccccc--cccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998764332211  1111122334333332 222333333443333 3322 233221 1111233433


Q ss_pred             eeccCCCCCCCeEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCccCeEEEecCCCEEEEEEeecCCCcCcceeEEEEEEeC
Q 001387          673 MCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDD  751 (1088)
Q Consensus       673 ~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~s~l~lid~  751 (1088)
                      ++ |+.  ....++... ++.+.+..+...  -..+.......+..++++|..+.+++++.+          +.++++|.
T Consensus       189 l~-~s~--~~~~~~~~~~d~~v~i~d~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d----------~~i~i~d~  253 (337)
T d1gxra_         189 ID-ISN--DGTKLWTGGLDNTVRSWDLREG--RQLQQHDFTSQIFSLGYCPTGEWLAVGMES----------SNVEVLHV  253 (337)
T ss_dssp             EE-ECT--TSSEEEEEETTSEEEEEETTTT--EEEEEEECSSCEEEEEECTTSSEEEEEETT----------SCEEEEET
T ss_pred             cc-ccc--cccccccccccccccccccccc--eeecccccccceEEEEEcccccccceeccc----------cccccccc
Confidence            32 221  123444444 677777766543  345666777888899999998888877643          46888888


Q ss_pred             CCceEEEEEECCCCceEeEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEEecCceeEeccc
Q 001387          752 QTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAF  831 (1088)
Q Consensus       752 ~t~~~i~~~~~~~~E~v~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Gri~v~~i~~~kl~~~~~~~~~g~v~ai~~~  831 (1088)
                      .+.+....  ......+.++   .+..+ .++++.|.          ..|.|.+|++..++.  +......++|++++--
T Consensus       254 ~~~~~~~~--~~~~~~i~~v---~~s~~-g~~l~s~s----------~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~s  315 (337)
T d1gxra_         254 NKPDKYQL--HLHESCVLSL---KFAYC-GKWFVSTG----------KDNLLNAWRTPYGAS--IFQSKESSSVLSCDIS  315 (337)
T ss_dssp             TSSCEEEE--CCCSSCEEEE---EECTT-SSEEEEEE----------TTSEEEEEETTTCCE--EEEEECSSCEEEEEEC
T ss_pred             cccccccc--cccccccceE---EECCC-CCEEEEEe----------CCCeEEEEECCCCCE--EEEccCCCCEEEEEEe
Confidence            77665432  2223334444   34433 35677664          237899998875543  3345578899988643


Q ss_pred             -cCe-EEEEEC-CEEEEEEe
Q 001387          832 -NGK-LLAAIN-QKIQLYKW  848 (1088)
Q Consensus       832 -~g~-Lv~~~g-~~l~v~~~  848 (1088)
                       +|+ |+.|.+ ++|++|++
T Consensus       316 ~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         316 VDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEE
Confidence             344 554444 67888775
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure