Citrus Sinensis ID: 001859
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1003 | 2.2.26 [Sep-21-2011] | |||||||
| Q3TXS7 | 953 | 26S proteasome non-ATPase | yes | no | 0.913 | 0.961 | 0.504 | 0.0 | |
| Q5F418 | 955 | 26S proteasome non-ATPase | yes | no | 0.918 | 0.964 | 0.502 | 0.0 | |
| Q99460 | 953 | 26S proteasome non-ATPase | yes | no | 0.904 | 0.951 | 0.506 | 0.0 | |
| O88761 | 953 | 26S proteasome non-ATPase | yes | no | 0.904 | 0.951 | 0.506 | 0.0 | |
| Q5R5S4 | 953 | 26S proteasome non-ATPase | yes | no | 0.904 | 0.951 | 0.506 | 0.0 | |
| Q9V3P6 | 1020 | 26S proteasome non-ATPase | yes | no | 0.930 | 0.914 | 0.477 | 0.0 | |
| Q54JM5 | 975 | 26S proteasome non-ATPase | yes | no | 0.952 | 0.979 | 0.454 | 0.0 | |
| O74762 | 965 | 26S proteasome regulatory | yes | no | 0.937 | 0.974 | 0.447 | 0.0 | |
| Q75CF3 | 930 | 26S proteasome regulatory | yes | no | 0.895 | 0.965 | 0.397 | 0.0 | |
| P32565 | 945 | 26S proteasome regulatory | yes | no | 0.889 | 0.943 | 0.395 | 0.0 |
| >sp|Q3TXS7|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/964 (50%), Positives = 658/964 (68%), Gaps = 48/964 (4%)
Query: 5 MVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQ 64
M++SA G++++L+E P LK AL LN+ V+ FW EIS SV IE LYEDE F RQ
Sbjct: 1 MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGF--RSRQ 58
Query: 65 LAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAES 124
AAL+ SKVFY+LG +SL+YALGAG LF+V+++S+YV T++AK ID Y + E+
Sbjct: 59 FAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTK---QCVEN 115
Query: 125 ND----EAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHG 180
D E +D RLE IV +M +C+ D KY+QA+GIA+E RRLD E+ I S++V G
Sbjct: 116 ADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPG 175
Query: 181 TLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEK 240
L+Y + + S + +++R +VLR+LVK+Y L PD++++CQCL+FLD+P+ V ILEK
Sbjct: 176 MLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEK 235
Query: 241 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSA 297
L++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P +
Sbjct: 236 LVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGS 290
Query: 298 QNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSH 357
+ DS E + A +PK+ + L IK ILSGE +I+L LQFL +
Sbjct: 291 EKDSDPMETEEKTASAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRN 345
Query: 358 NKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFS 417
N +DL+ILK K +V RNSVCH+AT+ AN+ MH GTT D FLR+NL+WL+RATNWAKF+
Sbjct: 346 NNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFT 403
Query: 418 ATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFL 477
ATA LGVIH+GH ++ LMA YLP+ + G S Y EGG LYALGLIHANHG I +L
Sbjct: 404 ATASLGVIHKGHEKEALQLMATYLPKDTSPG--SAYQEGGGLYALGLIHANHGGDIIDYL 461
Query: 478 RDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMV 537
+ L++ + ++++HG LGLGLAA+GTA +D+YD +K LY D AV GEAAG+++GL+M+
Sbjct: 462 LNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVML 521
Query: 538 GTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYG 596
G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR
Sbjct: 522 GSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRS 581
Query: 597 GMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLS 656
GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLS
Sbjct: 582 GMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLS 641
Query: 657 ESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEA 716
ESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E
Sbjct: 642 ESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEI 701
Query: 717 NDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVV 776
+V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VV
Sbjct: 702 TCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVV 761
Query: 777 GLSVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPT 836
G+ VF+QFW+W+PL +F+SL+++PT +IGLN DLK+P+ ++ S+ KPS F YP P VP
Sbjct: 762 GVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPK 821
Query: 837 TTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGKGKSSNEKDGDSMQV 896
K+ AVLS TA+ + K + + D +
Sbjct: 822 EKEKEKVSTAVLSI--------------------TAKAKKKEKEKEKKEEEKMEVDEAEK 861
Query: 897 DAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKS-APSGFVLLRDLRPNE 955
EKK EPEP+F++L NPARV+PAQ K + E RY P K + G ++L+D +
Sbjct: 862 KEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMTETCRYQPFKPLSIGGIIILKDTSEDV 921
Query: 956 PEVL 959
E++
Sbjct: 922 EELV 925
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Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. Mus musculus (taxid: 10090) |
| >sp|Q5F418|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O88761|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5R5S4|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9V3P6|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q54JM5|PSMD1_DICDI 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1 | Back alignment and function description |
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| >sp|O74762|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPN2 PE=3 SV=1 | Back alignment and function description |
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| >sp|P32565|RPN2_YEAST 26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN2 PE=1 SV=4 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1003 | ||||||
| 225465653 | 1005 | PREDICTED: 26S proteasome non-ATPase reg | 0.996 | 0.994 | 0.902 | 0.0 | |
| 449442377 | 1002 | PREDICTED: 26S proteasome non-ATPase reg | 0.995 | 0.996 | 0.892 | 0.0 | |
| 147862866 | 978 | hypothetical protein VITISV_021939 [Viti | 0.971 | 0.995 | 0.889 | 0.0 | |
| 224140807 | 1006 | predicted protein [Populus trichocarpa] | 0.997 | 0.994 | 0.891 | 0.0 | |
| 224060389 | 1004 | predicted protein [Populus trichocarpa] | 0.997 | 0.996 | 0.887 | 0.0 | |
| 356524636 | 1006 | PREDICTED: 26S proteasome non-ATPase reg | 0.998 | 0.995 | 0.882 | 0.0 | |
| 357521445 | 1001 | 26S proteasome non-ATPase regulatory sub | 0.994 | 0.996 | 0.880 | 0.0 | |
| 297823053 | 1002 | hypothetical protein ARALYDRAFT_482209 [ | 0.993 | 0.994 | 0.861 | 0.0 | |
| 356513024 | 1006 | PREDICTED: 26S proteasome non-ATPase reg | 0.998 | 0.995 | 0.875 | 0.0 | |
| 15225733 | 1004 | 26S proteasome regulatory subunit N2 [Ar | 0.995 | 0.994 | 0.863 | 0.0 |
| >gi|225465653|ref|XP_002270542.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 [Vitis vinifera] gi|296085308|emb|CBI29040.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1818 bits (4709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 908/1006 (90%), Positives = 940/1006 (93%), Gaps = 7/1006 (0%)
Query: 3 ATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQ 62
ATMVSSAGGLLAMLNESHP LK HALSNLN FVD FWPEISTSVPIIESLYEDEEFDQ Q
Sbjct: 2 ATMVSSAGGLLAMLNESHPMLKFHALSNLNIFVDYFWPEISTSVPIIESLYEDEEFDQRQ 61
Query: 63 RQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAA 122
RQLAALLVSKVFYYLGELNDSLSYALGAG LFDVSEDSDYVHTLLAKAIDEYAS+KS+A
Sbjct: 62 RQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLKSRAG 121
Query: 123 ESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTL 182
ESNDEA VDPRLEAIVERMLDKCI DG+YQQAMG+A+ECRRLDKLEEAITRSDNVHGTL
Sbjct: 122 ESNDEAL-VDPRLEAIVERMLDKCIVDGRYQQAMGMAVECRRLDKLEEAITRSDNVHGTL 180
Query: 183 SYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLL 242
SYCIN+SHSFVNRREYRREVLR LVKVYQKLPSPDYLSICQCLMFLDEPEGV SILEKLL
Sbjct: 181 SYCINISHSFVNRREYRREVLRCLVKVYQKLPSPDYLSICQCLMFLDEPEGVASILEKLL 240
Query: 243 RSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQN-DS 301
RSENKDDALLAFQIAFDLVENEHQAFLLNVRD L PK+QP ++VQPG+NDP +AQN +
Sbjct: 241 RSENKDDALLAFQIAFDLVENEHQAFLLNVRDRLSNPKSQPSESVQPGNNDPDTAQNGNP 300
Query: 302 STAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSD 361
+EDV+M +G+ AS ++ + DP E +YAERL KIKGILSGETSIQLTLQFLYSHNKSD
Sbjct: 301 GASEDVEMTDGSHASTGSLLEMDPNEALYAERLTKIKGILSGETSIQLTLQFLYSHNKSD 360
Query: 362 LLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAG 421
LLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAG
Sbjct: 361 LLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAG 420
Query: 422 LGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSL 481
LGVIHRGHLQQGRSLMAPYLPQ GAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSL
Sbjct: 421 LGVIHRGHLQQGRSLMAPYLPQSGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSL 480
Query: 482 RSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS 541
RSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS
Sbjct: 481 RSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTAS 540
Query: 542 EKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL 601
EKA EML YAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL
Sbjct: 541 EKASEMLAYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL 600
Query: 602 ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP 661
ALAY GTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP
Sbjct: 601 ALAYQGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNP 660
Query: 662 HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRV 721
HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQI+E +DSRV
Sbjct: 661 HVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISETSDSRV 720
Query: 722 GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVF 781
GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDK+TAVVGL+VF
Sbjct: 721 GTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKVTAVVGLAVF 780
Query: 782 SQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAV 841
SQFWYWYPLIYFISLSFSPTA IGLNYDLKVP FEFLSHAKPSLFEYP+PTTVPT TS V
Sbjct: 781 SQFWYWYPLIYFISLSFSPTAFIGLNYDLKVPTFEFLSHAKPSLFEYPRPTTVPTATSTV 840
Query: 842 KLPAAVLSTSAKAKARAKKEAEQK---EKEKAT-AEKTDLSSAGKGKSSNEKDGDSMQVD 897
KLP AVLSTSAKAKARAKKEAEQK EK T + + S+GKGKS+ EKDGDSMQVD
Sbjct: 841 KLPTAVLSTSAKAKARAKKEAEQKVNAEKSAGTESSSSTGQSSGKGKSTTEKDGDSMQVD 900
Query: 898 APPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPE 957
+P EKK EPE SFEIL NPARVVPAQEKFIKFLE+SRYVPVK APSGFVLLRDLRP EPE
Sbjct: 901 SPSEKKVEPEASFEILTNPARVVPAQEKFIKFLEESRYVPVKLAPSGFVLLRDLRPTEPE 960
Query: 958 VLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1003
VLSLTD PSST SPA GGS TGQQ +ASAMAVDEEPQPP FEYTS
Sbjct: 961 VLSLTDTPSSTASPA-GGSATGQQAAASAMAVDEEPQPPQAFEYTS 1005
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442377|ref|XP_004138958.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Cucumis sativus] gi|449526720|ref|XP_004170361.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|147862866|emb|CAN81101.1| hypothetical protein VITISV_021939 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224140807|ref|XP_002323770.1| predicted protein [Populus trichocarpa] gi|222866772|gb|EEF03903.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224060389|ref|XP_002300175.1| predicted protein [Populus trichocarpa] gi|222847433|gb|EEE84980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356524636|ref|XP_003530934.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357521445|ref|XP_003631011.1| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi|355525033|gb|AET05487.1| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297823053|ref|XP_002879409.1| hypothetical protein ARALYDRAFT_482209 [Arabidopsis lyrata subsp. lyrata] gi|297325248|gb|EFH55668.1| hypothetical protein ARALYDRAFT_482209 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356513024|ref|XP_003525214.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|15225733|ref|NP_180832.1| 26S proteasome regulatory subunit N2 [Arabidopsis thaliana] gi|2914700|gb|AAC04490.1| 26S proteasome regulatory subunit (RPN2), putative [Arabidopsis thaliana] gi|20466790|gb|AAM20712.1| 26S proteasome regulatory subunit [Arabidopsis thaliana] gi|330253636|gb|AEC08730.1| 26S proteasome regulatory subunit N2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1003 | ||||||
| TAIR|locus:2046402 | 1004 | AT2G32730 [Arabidopsis thalian | 0.995 | 0.994 | 0.780 | 0.0 | |
| TAIR|locus:2010672 | 1001 | AT1G04810 [Arabidopsis thalian | 0.990 | 0.992 | 0.769 | 0.0 | |
| ZFIN|ZDB-GENE-040426-810 | 959 | psmd1 "proteasome (prosome, ma | 0.920 | 0.962 | 0.470 | 6.9e-228 | |
| UNIPROTKB|G3V8B6 | 953 | Psmd1 "26S proteasome non-ATPa | 0.826 | 0.869 | 0.5 | 5.1e-223 | |
| UNIPROTKB|E1C5P3 | 958 | PSMD1 "26S proteasome non-ATPa | 0.826 | 0.865 | 0.500 | 6.5e-223 | |
| MGI|MGI:1917497 | 953 | Psmd1 "proteasome (prosome, ma | 0.826 | 0.869 | 0.5 | 1.3e-222 | |
| UNIPROTKB|A7MBA2 | 953 | PSMD1 "Uncharacterized protein | 0.826 | 0.869 | 0.5 | 1.7e-222 | |
| UNIPROTKB|F1NUT6 | 955 | PSMD1 "26S proteasome non-ATPa | 0.826 | 0.868 | 0.501 | 2.8e-222 | |
| RGD|621669 | 953 | Psmd1 "proteasome (prosome, ma | 0.826 | 0.869 | 0.498 | 2.8e-222 | |
| UNIPROTKB|Q99460 | 953 | PSMD1 "26S proteasome non-ATPa | 0.826 | 0.869 | 0.498 | 5.8e-222 |
| TAIR|locus:2046402 AT2G32730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3896 (1376.5 bits), Expect = 0., P = 0.
Identities = 788/1009 (78%), Positives = 836/1009 (82%)
Query: 1 MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQ 60
MA MVSSAGGLLAMLNE HP LKLHALSNLN+ VDQFWPEISTSVPIIESLYEDEEFD
Sbjct: 1 MATPMVSSAGGLLAMLNEPHPVLKLHALSNLNNLVDQFWPEISTSVPIIESLYEDEEFDL 60
Query: 61 HQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSK 120
HQRQLAALLVSKVFYYLGELNDSLSYALGAG LFDVSEDSDYVHTLLAKAIDEYAS++SK
Sbjct: 61 HQRQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLRSK 120
Query: 121 AAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHG 180
A ESN E ++DPRLEAIVERML KCI+DGKYQQAMGIAIECRRLDKLEEAI +SDNV G
Sbjct: 121 AVESN-EMVDIDPRLEAIVERMLGKCISDGKYQQAMGIAIECRRLDKLEEAIIKSDNVQG 179
Query: 181 TLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEK 240
TLSYCINVSHSFVN QKLPSPDYLSICQCLMFLDEP+GV SILEK
Sbjct: 180 TLSYCINVSHSFVNRREYRHEVLSLLVKVYQKLPSPDYLSICQCLMFLDEPQGVASILEK 239
Query: 241 LLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQND 300
LLRSENKDDALLA QIAFDLVENEHQAFLL+VRD LP PKT+ ++ Q + + A N+
Sbjct: 240 LLRSENKDDALLALQIAFDLVENEHQAFLLSVRDRLPAPKTRAVEATQ--AVETTIAPNE 297
Query: 301 SSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKS 360
+ + DVQM + TPA + V + DP + YAERL KIKGILSGETSIQLTLQFLYSHNKS
Sbjct: 298 NPSG-DVQMADETPAQTI-VHETDPVDATYAERLTKIKGILSGETSIQLTLQFLYSHNKS 355
Query: 361 DLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATA 420
DLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATA
Sbjct: 356 DLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATA 415
Query: 421 GLGVIHRGHLQQGRSLMAPXXXXXXXXXXXXXXXXXXXXYALGLIHANHGEGIKQFLRDS 480
GLGVIHRGHLQQGRSLMAP YALGLIHANHGEGIKQFLRDS
Sbjct: 416 GLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDS 475
Query: 481 LRSTNVEVIQHXXXXXXXXXXXXXXDEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTA 540
LRSTNVEVIQH DE+IYDD+K+VLYTDSAVAGEAAGISMGLL+VGTA
Sbjct: 476 LRSTNVEVIQHGACLGLGLSALGTADEEIYDDVKSVLYTDSAVAGEAAGISMGLLLVGTA 535
Query: 541 SEKAGEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYA 600
+EKA EML YAHETQHEKIIRGLALGIALTVYGREE ADTLIEQMTRDQDPI+RYGGMYA
Sbjct: 536 TEKASEMLAYAHETQHEKIIRGLALGIALTVYGREEGADTLIEQMTRDQDPIIRYGGMYA 595
Query: 601 LALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYN 660
LALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYS+PEQTPRIVSLLSESYN
Sbjct: 596 LALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSDPEQTPRIVSLLSESYN 655
Query: 661 PHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSR 720
PHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQI+EA+DSR
Sbjct: 656 PHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDSR 715
Query: 721 VGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSV 780
VG FRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDK+TAV+GL+V
Sbjct: 716 VGVFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKVTAVIGLAV 775
Query: 781 FSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSA 840
FSQFWYWYPLIYFISL+FSPTA IGLNYDLKVP+FEF+SHAKPSLFEYPKPTTVPT +A
Sbjct: 776 FSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFMSHAKPSLFEYPKPTTVPTANTA 835
Query: 841 VKLPAAVLSTSXXXXXXXXXXXXXXXXXXXXXXX---TDLSSAGKGKSSNEKDGDSMQVD 897
VKLP AVLSTS + S +GKGK+S EK+GDSMQVD
Sbjct: 836 VKLPTAVLSTSVKAKARAKKEAEQKAIAEKTSGPEKPVNESGSGKGKASTEKEGDSMQVD 895
Query: 898 XXXXXXXXXXX---SFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPN 954
+FEIL+NPARVVPAQEK+IK L+DSRYVPVK APSGFVLL+DLR +
Sbjct: 896 SPAAVEKKAPEPEPAFEILVNPARVVPAQEKYIKLLDDSRYVPVKLAPSGFVLLKDLREH 955
Query: 955 EPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXXMAVDEEPQPPAPFEYTS 1003
EPEVLSLTD MAVD+EPQPP FEY S
Sbjct: 956 EPEVLSLTDAPTSTASPATGTAAAAQGTPASAMAVDDEPQPPQAFEYAS 1004
|
|
| TAIR|locus:2010672 AT1G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-810 psmd1 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3V8B6 Psmd1 "26S proteasome non-ATPase regulatory subunit 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C5P3 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1917497 Psmd1 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A7MBA2 PSMD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NUT6 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| RGD|621669 Psmd1 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q99460 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9V3P6 | PSMD1_DROME | No assigned EC number | 0.4777 | 0.9302 | 0.9147 | yes | no |
| Q6FIP2 | RPN2_CANGA | No assigned EC number | 0.3817 | 0.8783 | 0.9362 | yes | no |
| Q75CF3 | RPN2_ASHGO | No assigned EC number | 0.3977 | 0.8953 | 0.9655 | yes | no |
| O74762 | RPN2_SCHPO | No assigned EC number | 0.4474 | 0.9371 | 0.9740 | yes | no |
| Q99460 | PSMD1_HUMAN | No assigned EC number | 0.5068 | 0.9042 | 0.9517 | yes | no |
| Q18115 | PSMD1_CAEEL | No assigned EC number | 0.3229 | 0.9002 | 0.9357 | yes | no |
| Q5F418 | PSMD1_CHICK | No assigned EC number | 0.5026 | 0.9182 | 0.9643 | yes | no |
| O88761 | PSMD1_RAT | No assigned EC number | 0.5068 | 0.9042 | 0.9517 | yes | no |
| Q3TXS7 | PSMD1_MOUSE | No assigned EC number | 0.5041 | 0.9132 | 0.9611 | yes | no |
| Q5R5S4 | PSMD1_PONAB | No assigned EC number | 0.5068 | 0.9042 | 0.9517 | yes | no |
| Q54JM5 | PSMD1_DICDI | No assigned EC number | 0.4540 | 0.9521 | 0.9794 | yes | no |
| P32565 | RPN2_YEAST | No assigned EC number | 0.3954 | 0.8893 | 0.9439 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00031868001 | SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (1005 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00014791001 | • | • | • | • | 0.955 | |||||
 | GSVIVG00010470001 | • | • | • | • | 0.934 | |||||
 | GSVIVG00036762001 | • | • | • | • | 0.887 | |||||
 | GSVIVG00015634001 | • | • | • | • | 0.862 | |||||
 | GSVIVG00018640001 | • | • | • | • | • | 0.852 | ||||
 | GSVIVG00019352001 | • | • | • | • | 0.836 | |||||
 | GSVIVG00030725001 | • | • | • | • | 0.818 | |||||
 | GSVIVG00006696001 | • | • | • | 0.807 | ||||||
 | GSVIVG00023752001 | • | • | • | • | 0.803 | |||||
 | GSVIVG00034204001 | • | • | • | 0.778 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1003 | |||
| COG5116 | 926 | COG5116, RPN2, 26S proteasome regulatory complex c | 0.0 | |
| COG5110 | 881 | COG5110, RPN1, 26S proteasome regulatory complex c | 1e-19 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 5e-08 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 3e-05 | |
| pfam01851 | 35 | pfam01851, PC_rep, Proteasome/cyclosome repeat | 2e-04 | |
| pfam01851 | 35 | pfam01851, PC_rep, Proteasome/cyclosome repeat | 2e-04 | |
| pfam12569 | 516 | pfam12569, NARP1, NMDA receptor-regulated protein | 0.001 |
| >gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 840 bits (2172), Expect = 0.0
Identities = 373/967 (38%), Positives = 540/967 (55%), Gaps = 81/967 (8%)
Query: 4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQR 63
+++A L A+L E + AL +N+ VDQ WPEIS + IE+LY+D+ FD R
Sbjct: 1 MSMTTARILPALLAELRDGRESEALDVINAHVDQLWPEISDDLRYIEALYDDDSFDP--R 58
Query: 64 QLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAE 123
++AAL +SKV+Y LGE ++ YAL AG F V + S Y T++ K+I+ Y +A
Sbjct: 59 EMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVH-MMDSAY 117
Query: 124 SNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRSDNVHGTLS 183
+ +D L+ ++E + KC+ D + +GIA E RLD +E+ + N ++
Sbjct: 118 IGGDKDIIDRILDFVLEVIGAKCVDDSEIGYLLGIAAEGLRLDIIEKYL-SDGNDCDIIN 176
Query: 184 YCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 243
Y ++++ + V +R+E+LR+L ++ P PDY + + +++L++ E +++EKL++
Sbjct: 177 YLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVK 236
Query: 244 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSST 303
++D LL Q+AFDL ++ Q L + L
Sbjct: 237 ---ENDLLLYAQVAFDLEDSASQEIL----EILVTELV---------------------- 267
Query: 304 AEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLL 363
Q D + ILSGE + + FL N +D
Sbjct: 268 ----------------AQGYDQA----------VMSILSGEFTKKYLGAFLLEKNNTDFK 301
Query: 364 ILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLG 423
L + K S+ + S H A AN+ M+ GT+ D+F R NLDWL +A+NWAKF+ATA LG
Sbjct: 302 FLNSSKSSLARKFSRFHYAVSLANSFMNLGTSNDSFYRNNLDWLGKASNWAKFTATASLG 361
Query: 424 VIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS 483
VIH G+ G ++ PYLP A S EGGALYALGLI A G ++L +
Sbjct: 362 VIHLGNSNPGYEILKPYLPSEVAS---SRQKEGGALYALGLIKAGFGREDTEYLLEYFLD 418
Query: 484 T---NVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTA 540
T + +G CLG+GL +G+A+ +IY+ +K +L D A+ GEAA MGLLM+GT
Sbjct: 419 TEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTW 478
Query: 541 SEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMY 599
S +A +M TYA ETQHE+I RGL +G AL +YGR+E AD I ++ D+D ILRY G++
Sbjct: 479 SVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVF 538
Query: 600 ALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESY 659
+LALAY GT N + LLH+AVSD +DDVRR AV+ALGFV + + V LLSES+
Sbjct: 539 SLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESH 598
Query: 660 NPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDS 719
N HVR G A+A+GI+CAGTG A +LE L D DFVRQ A+IA+ M+++Q N +
Sbjct: 599 NFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658
Query: 720 RVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLS 779
V ++ ++I+DKHE ++K+GA+LA GI +AGGRNVTI L + T +VGL
Sbjct: 659 NVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLRNATGILSADRIVGLV 718
Query: 780 VFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTS 839
+F Q+WYW+PLI+F+SLSF PT +IG+ +P+F F + FEYP+ + S
Sbjct: 719 LFLQYWYWFPLIHFVSLSFLPTTVIGIRGSQAIPKFCFNEDLEEEEFEYPRMYEEASGKS 778
Query: 840 AVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAE---KTDLSSAGKGKSSNEKDGD-SMQ 895
K+ AVLST+ KA ARAK QK KEK + K + S
Sbjct: 779 VRKVNTAVLSTTIKAAARAK----QKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKG 834
Query: 896 VDAPP---EKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLR 952
+DAP KK +P + N R++P Q ++I F++D R+VPV+ G V+LRD
Sbjct: 835 IDAPAILNVKKKKPYK----VDNMTRILPQQSRYISFIKDDRFVPVRKFKGGVVVLRDRE 890
Query: 953 PNEPEVL 959
P EP L
Sbjct: 891 PKEPVAL 897
|
Length = 926 |
| >gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
| >gnl|CDD|216739 pfam01851, PC_rep, Proteasome/cyclosome repeat | Back alignment and domain information |
|---|
| >gnl|CDD|216739 pfam01851, PC_rep, Proteasome/cyclosome repeat | Back alignment and domain information |
|---|
| >gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1003 | |||
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 100.0 | |
| KOG2005 | 878 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| COG5110 | 881 | RPN1 26S proteasome regulatory complex component [ | 100.0 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 100.0 | |
| KOG2005 | 878 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| COG5110 | 881 | RPN1 26S proteasome regulatory complex component [ | 99.97 | |
| KOG1858 | 1496 | consensus Anaphase-promoting complex (APC), subuni | 99.63 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.55 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.34 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.23 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.81 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.81 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.77 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.69 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 98.57 | |
| KOG1858 | 1496 | consensus Anaphase-promoting complex (APC), subuni | 98.46 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.22 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.05 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 97.99 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.9 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 97.89 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.75 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 97.63 | |
| PF01851 | 35 | PC_rep: Proteasome/cyclosome repeat; InterPro: IPR | 97.54 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.53 | |
| PF01851 | 35 | PC_rep: Proteasome/cyclosome repeat; InterPro: IPR | 97.52 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.33 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 97.29 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.26 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.15 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.11 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 96.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 96.8 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.78 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 96.48 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 96.3 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.28 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.02 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 95.83 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.82 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 95.26 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 95.2 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.9 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 94.89 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.6 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 94.49 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 94.45 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 93.67 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 93.49 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 93.44 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.35 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 93.32 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 93.24 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 93.23 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 92.9 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 92.6 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.6 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 92.57 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 92.45 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 92.4 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 92.34 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 92.23 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 92.19 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 91.71 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 91.13 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 91.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 90.79 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 90.76 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 90.67 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 90.57 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 90.12 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 89.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 89.45 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 89.33 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 89.14 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 88.91 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 88.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 88.1 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 88.08 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 87.73 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 87.65 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 87.33 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 87.3 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 86.86 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 86.61 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 85.99 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 85.72 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 85.44 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 84.94 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 84.52 | |
| cd06561 | 197 | AlkD_like A new structural DNA glycosylase. This d | 84.49 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 84.42 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 84.26 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 84.05 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 83.93 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 83.59 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 83.12 | |
| PRK06743 | 254 | flagellar motor protein MotP; Reviewed | 82.83 | |
| PF06685 | 249 | DUF1186: Protein of unknown function (DUF1186); In | 81.02 |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-241 Score=2030.88 Aligned_cols=923 Identities=64% Similarity=1.015 Sum_probs=864.1
Q ss_pred cccccHHHHHhhccCCChhHHHHHHHHHHHHHHhhhhHhhhcHHHHHHHhcccCCCHHHHHHHHHHHHHHccccCCchhH
Q 001859 4 TMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQHQRQLAALLVSKVFYYLGELNDS 83 (1003)
Q Consensus 4 ~~~~sa~~~l~lL~e~d~~l~~~AL~~L~~~v~~~w~ei~~~~~~ie~lye~~~f~~~~r~laA~v~Skvy~~lge~~es 83 (1003)
|++|||+|+++||+|+.++|+.+||.+++++||++|+||++++++||.||||.+|+ +|++||+++||||||||+|++|
T Consensus 1 ~~itsAa~lialL~e~~~~lk~~Al~~in~vVd~~WpEIsd~l~~IE~lyed~~F~--er~~AaL~~SKVyy~Lgeye~A 78 (929)
T KOG2062|consen 1 MMITSAAGLIALLREPEPSLKVHALFKINNVVDQFWPEISDSLPKIESLYEDETFP--ERQLAALLASKVYYYLGEYEDA 78 (929)
T ss_pred CcccchHHHHHHHhCCchHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHhccCCCc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhccccccCCcchHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Q 001859 84 LSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSKAAESNDEAANVDPRLEAIVERMLDKCITDGKYQQAMGIAIECR 163 (1003)
Q Consensus 84 L~yaL~ag~~fd~~~~~eYv~~l~~~~id~y~~~~~~~~~~~~~~~~id~~L~~iv~~~~~~~~~~~~~~~AigialE~~ 163 (1003)
|+|||+||+.||+++.++|++||+++|||+|++.+.+.++.+++...||+||++||+|||++|+.+|+|++|||||+|++
T Consensus 79 l~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~ 158 (929)
T KOG2062|consen 79 LEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETR 158 (929)
T ss_pred HHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhh
Confidence 99999999999999999999999999999999999988876655567999999999999999999999999999999999
Q ss_pred chHHHHHHHhccCChhhHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001859 164 RLDKLEEAITRSDNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLR 243 (1003)
Q Consensus 164 rld~l~~~i~~~~~~~~~~~Y~~~~~~~~v~~~~fr~~vL~~l~~iy~~~~~~dy~~~~~~~i~Lnd~~~v~~il~~L~~ 243 (1003)
|||+|++.+-++++...+|.|+++++++++++++||++||+++++.|+++++|||+++|||+++|||++.|+++|++|++
T Consensus 159 rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 159 RLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred hHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 99999997777799999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccCCccHHHHhhhhhccccchHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCC
Q 001859 244 SENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE 323 (1003)
Q Consensus 244 ~~~~~~~l~ayQiafdL~~~~~q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1003)
+++.++||||||||+++++|+||..|.+.|+.+. ..++
T Consensus 239 ---e~~~llayQIAFDL~esasQefL~~v~~~l~~d~---------------------~~de------------------ 276 (929)
T KOG2062|consen 239 ---EDDLLLAYQIAFDLYESASQEFLDSVLDRLPADD---------------------ARDE------------------ 276 (929)
T ss_pred ---cchhhhHHHHHHHHhhccCHHHHHHHHHHccccc---------------------cccc------------------
Confidence 5779999999999999999999999999887520 0010
Q ss_pred ChhhHHHHHHHHHHhhccCCCchhHhhHHHHhhcCCcchhhhhhhhhhhccccccchhHHHHHHHHhhcCCCcchhhchh
Q 001859 324 DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLREN 403 (1003)
Q Consensus 324 ~~~~~~~~~~l~~l~~IL~~~~~~~l~~~fl~~~~~~d~~~l~~~k~~ld~r~s~~~~A~~~~nafmnaGt~~D~flr~n 403 (1003)
..+.++..||||+.++++|.+||.++|++|+++|+.+|+++ |+|++|+|++++|||||+|||+|+|+|+|
T Consensus 277 --------~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK~s~--r~sv~H~A~~iAN~fMh~GTT~D~FlR~N 346 (929)
T KOG2062|consen 277 --------KPMEKIISILSGEETIKLYLQFLLRHNNTDLLILEEIKESV--RNSVCHTATLIANAFMHAGTTSDTFLRNN 346 (929)
T ss_pred --------ChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHHHHH--HHhhhhHHHHHHHHHHhcCCcchHHHHhc
Confidence 13578999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hhhhHhhcchhhHHHHHHhhhhcCCCchhhhhhccccccCCCCCCCCCCCchhhHHHHHhhhhccchHhHHHHHHhhccc
Q 001859 404 LDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRS 483 (1003)
Q Consensus 404 l~Wl~k~~~w~kfsAtaSLG~Ih~g~~~~~l~~L~~yL~~~~~~~~~~~y~k~GAl~ALGLI~~g~~~~al~~L~~~L~~ 483 (1003)
++|++|++||+||+||||||+||+||.++++++|.+|||+.+ ..++.|++|||+|||||||+||++.+.++|.++|++
T Consensus 347 L~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~--~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~ 424 (929)
T KOG2062|consen 347 LDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEA--GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT 424 (929)
T ss_pred hhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccC--CCCCCccccchhhhhhccccCcCccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999852 456899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcCCChhhHHHHHHHHhhhhcCCCchHHH-HHHHHhhhcCchhHHHH
Q 001859 484 TNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG-EMLTYAHETQHEKIIRG 562 (1003)
Q Consensus 484 ~~~~~vr~GA~LGLGla~~Gs~~e~~~e~L~~~L~~Ds~~~~e~AalALGLI~~Gs~n~~a~-~LL~~~~et~~e~i~r~ 562 (1003)
++++++|||+|||||+++|||.|+++|+.|+.+|+.|+++.+|+|++||||+|+||.|.+++ +|++|+++||||+|.|+
T Consensus 425 ~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RG 504 (929)
T KOG2062|consen 425 AENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRG 504 (929)
T ss_pred ccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHhHhccCChhhHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHhhhcC
Q 001859 563 LALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLY 642 (1003)
Q Consensus 563 ~algLgLl~~G~~e~ad~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~ddvrr~Avl~LGlI~~ 642 (1003)
+++|++|+.|||++.++.+|+.|..++||++||+|+|+++|||+||||+.+|++|||++++|++|||||+||++||||++
T Consensus 505 l~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 505 LAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCcHHHHHHHhhhcCCChhHHHHHHHHHHHHHhccccccccchHH
Q 001859 643 SEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVG 722 (1003)
Q Consensus 643 g~~e~v~~ll~~L~~s~np~VR~gaalALGl~~aGtg~~~aIdlL~~l~~D~dd~Vrq~AiiALGlI~~gt~~a~~pkva 722 (1003)
++|++|++++++|+++||||||||+|+|||++|||||+.++|++|+||++|+++||||+|+||+|||++|+++..|||++
T Consensus 585 ~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHhhhhccCCCceEEEeccCCCCCchhHHHHHHHHHHhHhHHHHHHHHhhccCCcE
Q 001859 723 TFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTA 802 (1003)
Q Consensus 723 ~~lr~L~~~~~~~~~d~~~rfga~lAqGLl~aGg~n~tisl~s~~~~~~~~a~vGll~f~q~~yw~pl~~~lsla~~P~~ 802 (1003)
.|+++|.++|.|||+|.+++|||++||||+++||||+||++++++|+.++.++|||++|+||||||||.||+||||+||+
T Consensus 665 ~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~WyWfPL~~flSLaf~PT~ 744 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYWYWFPLIHFLSLAFTPTT 744 (929)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCeEEEeeCCCCCCCCCCCCCCCCCccCccccccccccHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC
Q 001859 803 LIGLNYDLKVPRFEFLSHAKPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAGK 882 (1003)
Q Consensus 803 li~ld~~l~~p~~~~~~~~~~~~f~yp~~~~~~~~~~~~k~~tavLS~t~k~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1003)
+||+|+||++|+|+++||+||++|+||||.++++.|+++||+|||||||+|+|+|+|+.++||+..++ ++ +..
T Consensus 745 vigln~dLk~Pk~e~~s~ak~~~faYP~p~e~~~~k~~~Kv~TaVLS~t~kakar~k~~~~ek~~~~~---~~----~~~ 817 (929)
T KOG2062|consen 745 VIGLNEDLKIPKFEYISHAKPSLFAYPPPDEVKKAKEVEKVATAVLSTTAKAKARAKKEAKEKEPNEE---EG----KAH 817 (929)
T ss_pred EEEeccccCCcceeeeccCChhhccCCCccccchhhhhhccchhhhhhhhhhhhhhhhhhhhcccchh---hh----ccc
Confidence 99999999999999999999999999999999999999999999999999999999887766522211 00 011
Q ss_pred CCCCCccCCCCCCCCC----CCCCCCCCCCCcccccCCccccccccceeeecCCCCceecccCCCcEEEEecCCCCCccc
Q 001859 883 GKSSNEKDGDSMQVDA----PPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSAPSGFVLLRDLRPNEPEV 958 (1003)
Q Consensus 883 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~n~~rv~~~q~~~i~~~~~~r~~p~~~~~~gii~l~d~~p~e~~~ 958 (1003)
++...+++.+++..++ ++.+|++.||++++|+||+||+|+|+|||+|++++||+|||..+||||||+|+.|++|++
T Consensus 818 ~k~~~~ke~~~~~iDe~~~~~~~kKkKeep~~~~l~NpaRV~paQ~~~is~~~~~ry~P~k~~~gGiivl~d~~~~~~e~ 897 (929)
T KOG2062|consen 818 KKRETEKETEKMGIDEPAELEEVKKKKEEPKFEILDNPARVVPAQLKYISFIDDSRYVPVKLAIGGIVVLRDREPHEPED 897 (929)
T ss_pred cccchhhcccccccCcHHHHHHhhhcccCCchHhhcChhhcchhhcceeeeccCCceeeEeecCCcEEEEeccCCccchH
Confidence 1111122222222111 134555669999999999999999999999999999999999899999999999999999
Q ss_pred eeeccCCCCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCccCC
Q 001859 959 LSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPFEYTS 1003 (1003)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~f~~~~ 1003 (1003)
++++++|..+. +| +.+.+.||.||+||||..
T Consensus 898 l~e~v~~~~~~-------------~p-~~~~~~e~~pp~~fey~~ 928 (929)
T KOG2062|consen 898 LIELVRPTAAA-------------SP-AEPGETEPKPPEPFEYPS 928 (929)
T ss_pred HHHhccccccC-------------CC-CCCCCCCCCCCCccCCCC
Confidence 99999976331 22 334567899999999963
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd06561 AlkD_like A new structural DNA glycosylase | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK06743 flagellar motor protein MotP; Reviewed | Back alignment and domain information |
|---|
| >PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1003 | ||||
| 4b4t_N | 945 | Near-Atomic Resolution Structural Model Of The Yeas | 1e-170 | ||
| 4ady_A | 963 | Crystal Structure Of 26s Proteasome Subunit Rpn2 Le | 1e-157 |
| >pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 945 | Back alignment and structure |
|
| >pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2 Length = 963 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 956 bits (2473), Expect = 0.0
Identities = 381/1021 (37%), Positives = 581/1021 (56%), Gaps = 92/1021 (9%)
Query: 1 MAATMVSSAGGLLAMLNESHPSLKLHALSNLNSFVDQFWPEISTSVPIIESLYEDEEFDQ 60
+ +++A LLA+L E+ S+K +AL ++N+ VDQ W EIS +P IE+LY+D+ F
Sbjct: 9 HHGSSLTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSD 68
Query: 61 HQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDSDYVHTLLAKAIDEYASIKSK 120
R++AAL+ SKV+Y LGE ++ YAL A FD+ E S +V T+++K+I+ Y SK
Sbjct: 69 --REMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASK 126
Query: 121 AAESNDEAAN---VDPRLEAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAITRS-- 175
+++ +DP+L +I ERM++KC+ + + A+GIA+E RLD +E A+
Sbjct: 127 QYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLD 186
Query: 176 ----DNVHGTLSYCINVSHSFVNRREYRREVLRLLVKVYQKLPSPDYLSICQCLMFLDEP 231
++Y + ++ + V ++R +LR +P+ DYL++ + ++ L++
Sbjct: 187 QDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDA 246
Query: 232 EGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGS 291
+ + +KL ++D L+ QIAFDLV + Q L + L
Sbjct: 247 GLALQLFKKLK---EENDEGLSAQIAFDLVSSASQQLLEILVTELTAQ------------ 291
Query: 292 NDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTL 351
+ ILSG +
Sbjct: 292 ----------------------------------------GYDPALLNILSGLPTCDYYN 311
Query: 352 QFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRAT 411
FL ++ D+ +L K S++ + S+ H+A AN MHAGTT ++F++ NL WL +A
Sbjct: 312 TFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQ 371
Query: 412 NWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGE 471
NWAKF+ATA LGVIH+G+L +G+ +MAPYLP A S + +GG+LY LGLI+A G
Sbjct: 372 NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRAS---SRFIKGGSLYGLGLIYAGFGR 428
Query: 472 GIKQFLRDSLRS-------TNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVA 524
+L++ + +V+V+ HGA LG+GLAA+G+A+ ++Y+ +K VLY DSA +
Sbjct: 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATS 488
Query: 525 GEAAGISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIE 583
GEAA + MGL M+GT +A +M TY+ ETQH I RGLA+G+AL YGR+E AD LI
Sbjct: 489 GEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLIT 548
Query: 584 QMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYS 643
+M + +LRYGG + +ALAY+GT NN A+++LLH AVSD +DDVRR AV+ALGFVL
Sbjct: 549 KMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608
Query: 644 EPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGAL 703
+ PRIV LLS+S+N HVR G A A+GI+CAG GL AI +L+PLT D VDFVRQ A+
Sbjct: 609 DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668
Query: 704 IAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 763
IA++M+++Q E + +V + +I +KH++ ++K GA +A GI++AGGRNVTI+L
Sbjct: 669 IALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL 728
Query: 764 L-SKTKHDKITAVVGLSVFSQFWYWYPLIYFISLSFSPTALIGLN-YDLKVPRFEFLSHA 821
+ T +VVGL +FSQFWYW+PL +F+SLSF+PT +IG+ D +P+F+ +A
Sbjct: 729 ENADTGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYA 788
Query: 822 KPSLFEYPKPTTVPTTTSAVKLPAAVLSTSAKAKARAKKEAEQKEKEKATAEKTDLSSAG 881
K F YP+ + K+ AVLST+A+AKARAKK ++K + +K
Sbjct: 789 KEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEH-EEKE 847
Query: 882 KGKSSNEKDGDSMQVDAPPEKKAEPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVK-- 939
K + +N+K + + K + + N R++P Q ++I F++D R+VPV+
Sbjct: 848 KERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKF 907
Query: 940 SAPSGFVLLRDLRPNEPEVLSLTDAPSSTQSPAGGGSTTGQQGSASAMAVDEEPQPPAPF 999
+G V+LRD P EP L T + + VD+ P+
Sbjct: 908 KGNNGVVVLRDREPKEPVALIETVRQMKDVNAP----------LPTPFKVDDNVDFPSAL 957
Query: 1000 E 1000
+
Sbjct: 958 Q 958
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1003 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-05 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 0.001 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 2e-04 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 6e-05
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 17/160 (10%)
Query: 563 LALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL--ALAYSGTANNKA----IRQ 616
ALG +++V E +++++ P +Y +++L ++ + K I
Sbjct: 875 YALG-SISVGNLPEYLPFVLQEI--TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWA 931
Query: 617 LLHFAVSDVSDDVRRTAVLALG-FVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISC 675
LL + R LG L PR+ L + + R AV +
Sbjct: 932 LLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISG-SSYARSSVVTAVKFTI 990
Query: 676 AGTG------LSEAISLLEPLTSDVVDFVRQGALIAMAMV 709
+ L I D VR+ AL+
Sbjct: 991 SDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSA 1030
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1003 | |||
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.56 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.5 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.31 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.29 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.18 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.93 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.84 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.67 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.66 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.56 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.33 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.32 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.17 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.17 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.07 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.01 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.92 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.91 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.78 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.53 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 97.41 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.28 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.09 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.02 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.8 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.69 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.73 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.58 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 91.26 |
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.6e-12 Score=96.46 Aligned_cols=220 Identities=14% Similarity=0.098 Sum_probs=96.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH--HHHHHH
Q ss_conf 999985301598056899999999998448999879999998531798455899999975666179845899--999986
Q 001859 474 KQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAG--EMLTYA 551 (1003)
Q Consensus 474 l~~L~~~L~~~~~~~vr~GA~LGLGla~~Gt~~e~v~e~L~~~L~~Ds~~~~e~AalaLGLI~~Gs~n~~v~--~LL~~~ 551 (1003)
...|.+.|++ .+..+|..|+.+||.. | +++++..|...+...+..++..|+.+||-+.......... .++..+
T Consensus 21 ~~~L~~~L~d-~~~~vR~~A~~~L~~~--~--~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 95 (276)
T d1oyza_ 21 DDELFRLLDD-HNSLKRISSARVLQLR--G--GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 95 (276)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHH--C--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHH--C--CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9999988469-9999999999999861--8--873999999998099989999999999872022121202299999998
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 312863588899998757216892359---99999982299814577899999986517887999999999983298825
Q 001859 552 HETQHEKIIRGLALGIALTVYGREEEA---DTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDD 628 (1003)
Q Consensus 552 ~et~~e~i~r~~algLgLi~~G~~e~a---~~lie~L~~~~d~i~R~~a~~alglAyaGTGn~~aI~~LL~~~vsd~~dd 628 (1003)
.+..+..+++.++.+|+-+.-+..... -..+.....++++.+|+.++.+++ ..++..++..++... .+.+..
T Consensus 96 l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~----~~~~~~~~~~l~~l~-~~~~~~ 170 (276)
T d1oyza_ 96 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAIS----VINDKATIPLLINLL-KDPNGD 170 (276)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH----TC---CCHHHHHHHH-TCSSHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HCCHHHHHHHHHHHC-CCCCCH
T ss_conf 669976689999999998702462101899999999864720489999999874----102388999988740-466401
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89799999843217998876899999751089103688999998873489938899987000489806799899999999
Q 001859 629 VRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAM 708 (1003)
Q Consensus 629 vrr~AvlaLGlI~~g~~e~v~~li~~L~~s~np~VR~gaalALGla~aGtg~~~aI~lL~~l~~D~dd~Vrq~AiiALGl 708 (1003)
+++.+..+++.+..+.+...+.++. .....++.+|..+..+++.. +...++..|...+.|+ .||..|+-+||.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~al~~~----~~~~~~~~L~~~l~d~--~vr~~a~~aL~~ 243 (276)
T d1oyza_ 171 VRNWAAFAININKYDNSDIRDCFVE-MLQDKNEEVRIEAIIGLSYR----KDKRVLSVLCDELKKN--TVYDDIIEAAGE 243 (276)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHT----TCGGGHHHHHHHHTSS--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHHCCH--HHHHHHHHHHHH
T ss_conf 1135777877651021113316666-41100001233320010000----0000499999995795--999999999987
Q ss_pred HH
Q ss_conf 85
Q 001859 709 VM 710 (1003)
Q Consensus 709 I~ 710 (1003)
++
T Consensus 244 ig 245 (276)
T d1oyza_ 244 LG 245 (276)
T ss_dssp HC
T ss_pred CC
T ss_conf 59
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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