Citrus Sinensis ID: 001970

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------99
MDSDEEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSLQFDTFGSTAAEFARKQAEKEQQQRPSAIPGPAPDELVVPATESIGVKLLLKMGWRRGRSIKDSLYDARREGRKALLAFSSDDAKTAFNDAEPVDLEQSVNDDGQLSRCTPVYVLNPKQDLHGLGYDPYKNAPEFREKKRSRTSGHSKNGRTKALSIKDSLFGLKSGKVAPGFGIGALEEYDAEDEDLYGADYEFVDTYAEEDEEPSRLSKDVRKKLVGREQQDVLPGFILASKSDYQLERFDPPVVPKDFVPHHKFPGPLETDSKLAVPLPPEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQKRNDQTKLVSDGKSSETAQRLTAETRGKLLGERPLERSARDSSFSVGSENGIQIQFNLSDTFTKSASFNELPEVATPFQDDPAKQERFERFLKEKYQGGLRSTDSGGASAMSEAARARERLDFEAAAEAIEKAKQRKEGSISTEQLLGSSGAGRMLFTSGGLEQVKDTQAEDLTNKKVYPRREEFQWRPSPILCKRFDLIDPYIGKPPPAPRIKSKMDSLIFISDSVKAPRLEESVAANNDRYSAPQSDAPEISRDVTKEIEADIQVENVERPVDLYKAIFSDDSDDEVETFNPKKVEDPEKKIEVANTALSHLIAGDFLESLGKELGLEVPHESPPYPTSKAKNPAQKETSNANAGGNANILPVDNKSSSTRNAVSRTSIERWMPDQRETAQEGKSQKNEFTPGNPLNVSDKYKETDKYKGEIGCERSKEDEKSKLTSSHHKNRSSNSSSEDERSRKRSRRHRYSSDSYSDSSSEYRDQHHSRSKGRSKGSSREKSSSRRKHRKHRDRDSPRRSHNDAEKERTARKKDKKRRRD
ccccccccEEEccccccHHHHHHHHccHHHHHcccccccccccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHcccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHccccccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHcccccccccccEEEccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccc
cccccccEEEEccccccccccccccccccccccccccccccEEEEEEcccccccEccccccccccccEccccccccccccccEccHHcHHHHccccHHHcccHHHHHHHccccccccccHccccccHHHHHHHHHHHHHHcccccccccHHHHHcccccccHHHHHHHHccccccccccccHcHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHccccccHHHcccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccEEccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHccHHHHHHHcccccccHccccccccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEcccccccccccHHHHHHHHccccccEEEEEcccccHHEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHcccc
mdsdeedyvffgtpierEEEITSRRKKSIAEASGhlrtlapwkqevtdeegrrrfhgaftggfsagyyntvgskegwtpqtftssrKNRAEVKQQSILNFldedekaefegksfgtslqfdtfGSTAAEFARKQAEKEqqqrpsaipgpapdelvvpaTESIGVKLLLKMGwrrgrsikDSLYDARREGRKALLAFSSddaktafndaepvdleqsvnddgqlsrctpvyvlnpkqdlhglgydpyknapefrekkrsrtsghskngrtkalsikdslfglksgkvapgfgigaleeydaededlygadyefvdtyaeedeepsrlsKDVRKKLvgreqqdvlpgfilasksdyqlerfdppvvpkdfvphhkfpgpletdsklavplppeipppednnLKLLIEGVATLVARCGKLFEDisreknqsnplfsfltggnghdYYARKLWEARqkrndqtklvsdgksseTAQRLTAETRGKllgerplersardssfsvgsengiQIQFnlsdtftksasfnelpevatpfqddpakQERFERFLKEKyqgglrstdsggaSAMSEAARARERLDFEAAAEAIEKAKQrkegsisteqllgssgagrmlftsggleqvkdtqaedltnkkvyprreefqwrpspilckrfdlidpyigkpppaprikskmdslifisdsvkaprleesvaanndrysapqsdapeisRDVTKEIEADIQVENVERPVDLYKAifsddsddevetfnpkkvedpekKIEVANTALSHLIAGDFLESLGKelglevphesppyptskaknpaqketsnanaggnanilpvdnkssstrnavSRTSierwmpdqretaqegksqkneftpgnplnvsdkyketdkykgeigcerskedekskltsshhknrssnsssedersrkrsrrhryssdsysdssseyrdqhhsrskgrskgssreksssrrkhrkhrdrdsprrshndaEKERTArkkdkkrrrd
mdsdeedyvffgtpiereeeitsrRKKSIaeasghlrtlapwkqevtdeegrrRFHGAFTGGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSLQFDTFGSTAAEFARKQAEKEqqqrpsaipgpapdelvvpATESIGVKlllkmgwrrgrsiKDSLYDARREGRKALLAFSSDDAKTAFNDAEPVDLEQSVNDDGQLSRCTPVYVLnpkqdlhglgydpyknapefrekkrsrtsghskngrtkalsikdslfglksgKVAPGFGIGALEEYDAEDEDLYGADYEFVDTyaeedeepsrlskdvrkklvgreqqdvlpgfiLASKSDYQLERFDPPVVPKDFVPHHKFPGPLETDSKLAVPLPPEIPPPEDNNLKLLIEGVATLVARCGKLFEdisreknqsnplfsfltggnGHDYYARKLWEarqkrndqtklvsdgkssetaqrltaetrgkllgerplersardssfsvgseNGIQIQFNLSDTFTKSASFNELPevatpfqddpaKQERFERFLKEkyqgglrstdsggaSAMSEAARARERLDFEAAAEAIEkakqrkegsisteqllgssgAGRMLFTSggleqvkdtqaedltnkkvyprreefqwrpspilckrfdlIDPYIGKpppaprikskmDSLIFISDSVKAPRLEEsvaanndrysapqsdapeisRDVTKEIEAdiqvenverpvDLYKaifsddsddevetfnpkkvedpekKIEVANTALSHLIAGDFLESLGKELGLEVPHESPPYPTSKAKNPAQKEtsnanaggnanilpvdnkssstrnavsrtsierwmpdqretaqegksqkneftpgnplnvsdkyketdkykgeigcerskedekskltsshhknrssnsssedersrkrsrrhryssdsysdssseyrdqhhsrskgrskgssreksssrrkhrkhrdrdsprrshndaekertarkkdkkrrrd
MDSDEEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSLQFDTFGSTAAEFARKQAEKEQQQRPSAIPGPAPDELVVPATESIGVKLLLKMGWRRGRSIKDSLYDARREGRKALLAFSSDDAKTAFNDAEPVDLEQSVNDDGQLSRCTPVYVLNPKQDLHGLGYDPYKNAPEFREKKRSRTSGHSKNGRTKALSIKDSLFGLKSGKVAPGFGIgaleeydaededlygadyeFVDTYAEEDEEPSRLSKDVRKKLVGREQQDVLPGFILASKSDYQLERfdppvvpkdfvphhkFPGPLETDSKLAVplppeipppeDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQKRNDQTKLVSDGKSSETAQRLTAETRGKLLGERPLERSARDSSFSVGSENGIQIQFNLSDTFTKSASFNELPEVATPFQDDPAKQERFERFLKEKYQGGLRSTDsggasamseaararerLDFeaaaeaiekakqrkeGSISTEQLLGSSGAGRMLFTSGGLEQVKDTQAEDLTNKKVYPRREEFQWRPSPILCKRFDLIDPYIGKPPPAPRIKSKMDSLIFISDSVKAPRLEESVAANNDRYSAPQSDAPEISRDVTKEIEADIQVENVERPVDLYKAIFSDDSDDEVETFNPKKVEDPEKKIEVANTALSHLIAGDFLESLGKELGLEVPHESPPYPTSKAKNPAQKETSNANAGGNANILPVDNKSSSTRNAVSRTSIERWMPDQRETAQEGKSQKNEFTPGNPLNVSDKYKETDKYKGEIGCERSKEDEKSKLTsshhknrssnsssedersrkrsrrhryssdsysdssseyrDQhhsrskgrskgssreksssrrkhrkhrdrdsprrshNDaekertarkkdkkrrrd
****************************************************RRFHGAFTGGFSAGYYNTVGSKEGW*****************************************************************************VVPATESIGVKLLLKMGWRRGRSIKDSLYD***************************************SRCTPVYVLNPKQDLHGLGY*********************************SLFGLKSGKVAPGFGIGALEEYDAEDEDLYGADYEFVDTY************************DVLPGFILASKSDYQLERFDPPVVPKDFV******************************LKLLIEGVATLVARCGKLFEDISR*****NPLFSFLTGGNGHDYYARKLWE********************************************************IQF*************************************************************************************************************************VYPRREEFQWRPSPILCKRFDLIDPYIG**************LIFI*****************************************IQVENVERPVDLYKAIF************************VANTALSHLIAGDFLESLG*******************************************************************************************************************************************************************************************************************
****EEDYVFFGTPIER*******************RTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTP********************FLDEDEKAEFEGK************************************PAPDELVVPATESIGVKLLLKMGWR*********************************************DDGQLSRCTPVYVLNPKQDLHGLGYDP**********************************************IGALEEYDAEDED****************************************GFI**************PVVPKDFVPHHKF**********************************************************************************************************************************************************************FERFL*************************RERLDFEA************************************************************QWRPSPILCKRFDLI***************************************************************************LYKA****************************************************************************************************************************************************************************************************************************************************************
MDSDEEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTP***********EVKQQSILNFLDEDEKAEFEGKSFGTSLQFDTFGSTAAE****************IPGPAPDELVVPATESIGVKLLLKMGWRRGRSIKDSLYDARREGRKALLAFSSDDAKTAFNDAEPVDLEQSVNDDGQLSRCTPVYVLNPKQDLHGLGYDPYKNAPEF****************TKALSIKDSLFGLKSGKVAPGFGIGALEEYDAEDEDLYGADYEFVDTY************DVRKKLVGREQQDVLPGFILASKSDYQLERFDPPVVPKDFVPHHKFPGPLETDSKLAVPLPPEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQK*******************LTAETRGKLLGERP************GSENGIQIQFNLSDTFTKSASFNELPEVATPFQDDPAKQERFERFLKEKYQGG*****************ARERLDFEAAAEAI************TEQLLGSSGAGRMLFTSGGLEQVKDTQAEDLTNKKVYPRREEFQWRPSPILCKRFDLIDPYIGKPPPAPRIKSKMDSLIFISDSVKAPRLEESVAANN**************RDVTKEIEADIQVENVERPVDLYKAIFSDDSDDEVETFNPKKVEDPEKKIEVANTALSHLIAGDFLESLGKELGLEVPH*********************NAGGNANILPVDN**********RTSIERWMPD************NEFTPGNPLNVSDKYKETDKYKGEIGC*************************************************************************************************************
*****EDYVFFGTPIERE******RKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTFT**************L*FLDEDEKAEFEG***********FGSTAAEFARKQAEKEQQQRPSAIPGPAPDELVVPATESIGVKLLLKMGWRRGRSIKDSLYDA*R*******************************DDGQLSRCTPVYVLNPKQDLHGLGYDPYKNAP************************************APGFGIGALEEYDAEDEDLYGADYEFVDTYAEEDE*****************QQDVLPGFILASKSDYQLERFDPPVVPKDFVPHHKFP******************PPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQKRNDQ*********************************************************************ATPFQDDPAKQERFERFLKEKYQ**************SEAARARERLDFEAAAEAIEK*******************************************KKVYPRREEFQWRPSPILCKRFDLIDPYIGKPPPA***KSKMD****************************************************ERPVDLYKAIFSDD***********KVEDPEKKIEVANTALSHLIAGDFLESLGKELGLEVPHES********************************************************************************************************************************************************************************************************
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MDSDEEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSLQFDTFGSTAAEFARKQAEKEQQQRPSAIPGPAPDELVVPATESIGVKLLLKMGWRRGRSIKDSLYDARREGRKALLAFSSDDAKTAFNDAEPVDLEQSVNDDGQLSRCTPVYVLNPKQDLHGLGYDPYKNAPEFREKKRSRTSGHSKNGRTKALSIKDSLFGLKSGKVAPGFGIGALEEYDAEDEDLYGADYEFVDTYAEEDEEPSRLSKDVRKKLVGREQQDVLPGFILASKSDYQLERFDPPVVPKDFVPHHKFPGPLETDSKLAVPLPPEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQKRNDQTKLVSDGKSSETAQRLTAETRGKLLGERPLERSARDSSFSVGSENGIQIQFNLSDTFTKSASFNELPEVATPFQDDPAKQERFERFLKEKYQGGLRSTDSGGASAMSEAAxxxxxxxxxxxxxxxxxxxxxKEGSISTEQLLGSSGAGRMLFTSGGLEQVKDTQAEDLTNKKVYPRREEFQWRPSPILCKRFDLIDPYIGKPPPAPRIKSKMDSLIFISDSVKAPRLEESVAANNDRYSAPQSDAPEISRDVTKEIEADIQVENVERPVDLYKAIFSDDSDDEVETFNPKKVEDPEKKIEVANTALSHLIAGDFLESLGKELGLEVPHESPPYPTSKAKNPAQKETSNANAGGNANILPVDNKSSSTRNAVSRTSIERWMPDQRETAQEGKSQKNEFTPGNPLNVSDKYKETDKYKGEIGCERSKEDEKSKLTSSHHKNRSSNSSSEDERSRKRSRRHRYSSDSYSDSSSEYRDQHHSRSKGRSKGSSREKSSSRRKHRKHRDRDSPRRSHNDAEKERTARKKDKKRRRD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query988 2.2.26 [Sep-21-2011]
Q24K12931 G patch domain-containing yes no 0.572 0.607 0.294 4e-42
Q9BRR8931 G patch domain-containing yes no 0.345 0.366 0.353 2e-36
Q9DBM1930 G patch domain-containing yes no 0.336 0.356 0.328 9e-35
Q21827812 G patch domain-containing yes no 0.298 0.363 0.324 6e-30
Q9VUA0952 G patch domain-containing yes no 0.284 0.295 0.314 3e-25
Q9HE07534 Uncharacterized protein C yes no 0.272 0.503 0.274 9e-19
Q8CGZ0 936 Calcium homeostasis endop no no 0.058 0.061 0.474 5e-06
Q8IWX8 916 Calcium homeostasis endop no no 0.058 0.063 0.474 5e-06
>sp|Q24K12|GPTC1_BOVIN G patch domain-containing protein 1 OS=Bos taurus GN=GPATCH1 PE=2 SV=1 Back     alignment and function desciption
 Score =  174 bits (440), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 211/716 (29%), Positives = 314/716 (43%), Gaps = 150/716 (20%)

Query: 1   MDSD-EEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGR-RRFHGA 58
           +DSD +ED V +GT +E  EE   R KK I              Q V DE+GR +RFHGA
Sbjct: 4   LDSDSDEDLVSYGTGLEPLEE-GERPKKPIPLQD----------QTVRDEKGRYKRFHGA 52

Query: 59  FTGGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSL 118
           F+GGFSAGY+NTVGSKEGWTP +F SSR+NRA+       +F+DE++ +EF G +  + +
Sbjct: 53  FSGGFSAGYFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEF-GIAPKSIV 111

Query: 119 QFDTFGSTAAEFARKQAEKEQQQRPSAIPGPA-PDELVVPATESIGVKLLLKMGWRRGRS 177
             D F S   +  R++A ++     + IPG    D+L+ PA  S+G +LL KMGW+ G+ 
Sbjct: 112 TTDDFASKTKDRIREKA-RQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQG 170

Query: 178 IKDSLYDARREGRK-----------ALLAFSSDDAKTAFNDAEPVDLEQSVNDDGQLSRC 226
           I   +   RR  R+           AL    S+ ++   +D  P ++  +  D       
Sbjct: 171 IGPRV--KRRPRRQKPDPGVKIYGCALPPGGSEGSEDEDDDYLPENVTFAPKD------V 222

Query: 227 TPVYVLNPKQDLHGLGY---DPYKNAPEFREKKRSRTSGHSKNGRTKALSIKDSLF---- 279
           TPV    PK ++HGL Y   DP++            TSG   N  +        L     
Sbjct: 223 TPVD-FTPKDNVHGLAYKGLDPHQAL--------FGTSGEHFNLFSGGPEETGDLLGDIG 273

Query: 280 ---GLKSGKVAPGFGIGALEEYDAEDEDLYGADYEFVDTYAEEDEEPS------------ 324
              G K G     FG+GALEE   ED+D+Y  +         +DEEP             
Sbjct: 274 VNKGRKLGISGQAFGVGALEE---EDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPRQY 330

Query: 325 RLSKDVRKKL--VGREQQDVLPGFILASKSDYQLERFDPPVVPKDFVPHHKFPGPLETDS 382
           +  K+  K L  VG+    +L GF LASK     + + PP +P+D+ P H F        
Sbjct: 331 KSQKESEKDLCYVGK----ILDGFSLASKPLSSKKIYPPPELPRDYRPVHYF-------- 378

Query: 383 KLAVPLPPEIPPPEDNNLKLLIEGVATLVARCGKLFEDI-SREKNQSNP-----LFSFLT 436
                  P +    +N+  L +     L    GK   D  +R ++Q N      L     
Sbjct: 379 ------RPVVAATSENSHLLQV-----LSESAGKPTNDPGTRSRHQLNACKRGELLGETP 427

Query: 437 GGNGHDYYARKLWEARQKRNDQTKLVSDGKSSETAQRLTAETRGKLLGER--PLERSARD 494
                      L +  ++R  + K  +D K+++   R  A++     G R  PL      
Sbjct: 428 IQGAPTSVLEFLSQKDKERLKEVKQATDLKAAQLRARSLAQSAS---GSRPQPLSPDVGH 484

Query: 495 SSFSVGSENGIQIQFNLSDTFTKSASFNELPEVATPFQDDPAKQERFERFLKEKYQGGLR 554
            S+ +    G+          T++++F        PF  DP KQ+R+E FL    +G   
Sbjct: 485 CSWHMALSGGM--------ASTRTSNFK-------PFAKDPEKQKRYEEFLANMKRGQKD 529

Query: 555 STDSGGASAMSEAARARERLDFEAAAEAIEKAKQRKEGSISTEQLLGSSGAGRMLFTSGG 614
           + +      M+E  R RER +F  AA              S+   L S       FT   
Sbjct: 530 ALERCLDPGMTEWERGRERDEFARAALLY----------ASSHSTLSSR------FTHAQ 573

Query: 615 LE------QVKDTQAEDLTNK------KVYPR--REEFQWRPSPILCKRFDLIDPY 656
            E      +V   Q  D+++K      K++ +  R+ F+W P  +LCKRF++ DPY
Sbjct: 574 EEDDSEQVEVPRDQENDVSDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFNVPDPY 629

Bos taurus (taxid: 9913)
>sp|Q9BRR8|GPTC1_HUMAN G patch domain-containing protein 1 OS=Homo sapiens GN=GPATCH1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DBM1|GPTC1_MOUSE G patch domain-containing protein 1 OS=Mus musculus GN=Gpatch1 PE=2 SV=1 Back     alignment and function description
>sp|Q21827|GPTC1_CAEEL G patch domain-containing protein 1 homolog OS=Caenorhabditis elegans GN=R07E5.1 PE=1 SV=1 Back     alignment and function description
>sp|Q9VUA0|GPTC1_DROME G patch domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG8833 PE=2 SV=1 Back     alignment and function description
>sp|Q9HE07|YK96_SCHPO Uncharacterized protein C20H4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20H4.06c PE=4 SV=1 Back     alignment and function description
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus GN=Cherp PE=1 SV=1 Back     alignment and function description
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens GN=CHERP PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query988
2555418701000 RNA binding protein, putative [Ricinus c 0.993 0.982 0.675 0.0
225455802997 PREDICTED: G patch domain-containing pro 0.938 0.929 0.641 0.0
224121340965 predicted protein [Populus trichocarpa] 0.935 0.957 0.660 0.0
297734143944 unnamed protein product [Vitis vinifera] 0.827 0.866 0.688 0.0
3565138801014 PREDICTED: G patch domain-containing pro 0.939 0.915 0.601 0.0
4494411331001 PREDICTED: G patch domain-containing pro 0.967 0.955 0.583 0.0
30688799930 G patch domain-containing protein 1 [Ara 0.782 0.831 0.648 0.0
297812455944 hypothetical protein ARALYDRAFT_489162 [ 0.784 0.820 0.646 0.0
79328434900 G patch domain-containing protein 1 [Ara 0.752 0.825 0.626 0.0
115468146984 Os06g0489200 [Oryza sativa Japonica Grou 0.935 0.939 0.478 0.0
>gi|255541870|ref|XP_002511999.1| RNA binding protein, putative [Ricinus communis] gi|223549179|gb|EEF50668.1| RNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1213 bits (3139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1006 (67%), Positives = 780/1006 (77%), Gaps = 24/1006 (2%)

Query: 1    MDSDEEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFT 60
            MD DEED+VF+GTPIEREEEITSR+KK++AEASGHLRTL PWKQEV DEEGRRRFHGAFT
Sbjct: 1    MDVDEEDFVFYGTPIEREEEITSRKKKAVAEASGHLRTLVPWKQEVRDEEGRRRFHGAFT 60

Query: 61   GGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSLQF 120
            GG+SAGYYNTVGSKEGWTPQ+FTSSRKNRAEVKQQ+ILNFLD+DE+AE E +S GTS QF
Sbjct: 61   GGYSAGYYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDDDERAELEDRSLGTSSQF 120

Query: 121  DTFGSTAAEFARKQAEKEQQQRPSAIPGPAPDELVVPATESIGVKLLLKMGWRRGRSIK- 179
            DTFG TAAE+ARKQAEKEQQQRPSAIPGP PDELV+PATESIGVKLLLKMGWR G SI+ 
Sbjct: 121  DTFGFTAAEYARKQAEKEQQQRPSAIPGPVPDELVLPATESIGVKLLLKMGWRHGHSIRG 180

Query: 180  ---DSLYDARREGRKALLAFSSDDAKTAFNDAEPVD-----LEQSVNDDGQLSRCTPVYV 231
               +SLYDARRE RKALLA SSDDA      +EP +     L  SVNDD Q SR TPV+V
Sbjct: 181  SRANSLYDARREARKALLALSSDDANVHCIKSEPGEDDLGSLGLSVNDDVQTSRSTPVFV 240

Query: 232  LNPKQDLHGLGYDPYKNAPEFREKKRSRTSGHSKNGRTKALSIKDSLFGLKSGKVAPGFG 291
            LNPKQDL+GLGYDPYK+APEFREKKRSR S + + G  KAL ++D LFG KSGK APGFG
Sbjct: 241  LNPKQDLYGLGYDPYKHAPEFREKKRSRVSDNREPGNRKALLMRDGLFGFKSGKAAPGFG 300

Query: 292  IGALEEYDAEDEDLYGADYEFVDTYAEEDEEPSRLSKDVRKKLVGREQQDVLPGFILASK 351
            IGALEEYDAEDEDLYG  Y+F +T  EE EEP+R+S D ++KLV +E Q VLPGF +AS 
Sbjct: 301  IGALEEYDAEDEDLYGTAYDFEETCVEEVEEPARISTDHKQKLVWKE-QGVLPGFRVASN 359

Query: 352  SDYQLERFDPPVVPKDFVPHHKFPGPLETDSKLAVPLPPEIPPPEDNNLKLLIEGVATLV 411
            SDYQLERFDPPV+PKDFVPHHKFPG L+ D K  +P PPE+PPP+DNNLKLLIEGVATLV
Sbjct: 360  SDYQLERFDPPVIPKDFVPHHKFPGSLQADDKHTIPPPPEVPPPDDNNLKLLIEGVATLV 419

Query: 412  ARCGKLFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQKRNDQTKLVSDGKSSETA 471
            ARCGKLFED+SR+KNQSNPLFSFL GGNGH+YYARKLWE  QK NDQ  L  DGKSS + 
Sbjct: 420  ARCGKLFEDLSRDKNQSNPLFSFLNGGNGHEYYARKLWEECQKCNDQKHLALDGKSSSSV 479

Query: 472  QRLTAETRGKLLGERPLERSARDSSFSVGSENGIQIQFNLSDTFTKSASFNELPEVATPF 531
            QR+TAE+R  LLGE+PLERS ++++ SV S +   +QFNLSDTF K AS++ELPEVA PF
Sbjct: 480  QRMTAESRANLLGEKPLERSLKENTSSVASAD-FNLQFNLSDTFIKPASYSELPEVAKPF 538

Query: 532  QDDPAKQERFERFLKEKYQGGLRSTDSGGASAMSEAARARERLDFEAAAEAIEKAKQRKE 591
            +DDPAKQERFE+FLKEKY GGLRS DS GAS MSEAARARERLDFEAAAEAIEK K  KE
Sbjct: 539  KDDPAKQERFEQFLKEKYYGGLRSMDSVGASNMSEAARARERLDFEAAAEAIEKGKGNKE 598

Query: 592  GSISTEQLLGSSGAGRMLFTSGGLEQVKDTQAEDLTNKKVYPRREEFQWRPSPILCKRFD 651
              +S +Q +  S  G   FTSGGLEQVKD  AEDL  KK+YP+REEFQWRP PILCKRFD
Sbjct: 599  TKLSAQQFMAFSTGGGTQFTSGGLEQVKDAHAEDLLMKKIYPKREEFQWRPLPILCKRFD 658

Query: 652  LIDPYIGKPPPAPRIKSKMDSLIFISDSVKAPRLEESVAANNDRYSAPQSDAPEISRDVT 711
            LIDPY+GKPPP PR++SK+DSLIF SDSVK  +LEE+  AN DR S  QS   +IS+D  
Sbjct: 659  LIDPYMGKPPPPPRMRSKLDSLIFTSDSVKPTKLEETTNANRDRISNLQSGTQKISKDAA 718

Query: 712  -KEIEADIQVENVERPVDLYKAIFSDDSDDEVETFNPKKVEDPEKKIEVANTALSHLIAG 770
              E   ++QVENVERPVDLYKAIFSDDSDDEVE     KVEDP+KK+EVA+T L+ LIAG
Sbjct: 719  DSEKVVEVQVENVERPVDLYKAIFSDDSDDEVEASTANKVEDPDKKVEVAHTTLNRLIAG 778

Query: 771  DFLESLGKELGLEVPHESPPYPTSKAKNPAQKETSNANAGGNANILPVDNKSSSTRNAVS 830
            DFLESLGKELGLEVP +  PY T+K      K+ S      + NILP++NKSSS  NA +
Sbjct: 779  DFLESLGKELGLEVPPDM-PYSTNKTGTSTSKKDSAIANTRDVNILPIENKSSSNPNASN 837

Query: 831  RTSIERWMPDQRETAQEGKSQKNEFTPGNPLNVSDKYKETDKYKGEIGC----ERSKEDE 886
             T     +   +E A+  +S KNE  P NP + S +Y E       +G     + S ED 
Sbjct: 838  ATYRNEGV--HQEIAKGSESLKNESAPRNPPSGSSRYMEHGGPNSRVGVIDLDKTSLEDS 895

Query: 887  KSKLTSSHHKNRSSNSSSEDERSRKRSRRHRY-SSDSYSDSSSEYRDQHHSRSKGRSKG- 944
            K+K   S H+ + S SSSEDE+SRK SRRHRY SSDSYS+SSS+   +HHSRSKGR KG 
Sbjct: 896  KAKSPRSRHR-KLSGSSSEDEKSRKHSRRHRYSSSDSYSESSSDDWSRHHSRSKGRKKGS 954

Query: 945  --SSREKSSSRRKHRKHRDRDSPRRSHNDAEKERTARKKDKKRRRD 988
                +  S    K  KHR RDSP RSH   EKER   K++K++ RD
Sbjct: 955  SRERKSSSKKHSKRHKHRSRDSPERSHLSTEKERAGSKREKRKWRD 1000

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455802|ref|XP_002271556.1| PREDICTED: G patch domain-containing protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121340|ref|XP_002318558.1| predicted protein [Populus trichocarpa] gi|222859231|gb|EEE96778.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297734143|emb|CBI15390.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513880|ref|XP_003525636.1| PREDICTED: G patch domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449441133|ref|XP_004138338.1| PREDICTED: G patch domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30688799|ref|NP_197699.2| G patch domain-containing protein 1 [Arabidopsis thaliana] gi|26451308|dbj|BAC42755.1| unknown protein [Arabidopsis thaliana] gi|30793925|gb|AAP40415.1| unknown protein [Arabidopsis thaliana] gi|332005733|gb|AED93116.1| G patch domain-containing protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297812455|ref|XP_002874111.1| hypothetical protein ARALYDRAFT_489162 [Arabidopsis lyrata subsp. lyrata] gi|297319948|gb|EFH50370.1| hypothetical protein ARALYDRAFT_489162 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79328434|ref|NP_001031926.1| G patch domain-containing protein 1 [Arabidopsis thaliana] gi|9759366|dbj|BAB09825.1| unnamed protein product [Arabidopsis thaliana] gi|41207569|gb|AAR99647.1| TOUGH [Arabidopsis thaliana] gi|332005734|gb|AED93117.1| G patch domain-containing protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115468146|ref|NP_001057672.1| Os06g0489200 [Oryza sativa Japonica Group] gi|51535684|dbj|BAD37703.1| putative SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Oryza sativa Japonica Group] gi|113595712|dbj|BAF19586.1| Os06g0489200 [Oryza sativa Japonica Group] gi|215737219|dbj|BAG96148.1| unnamed protein product [Oryza sativa Japonica Group] gi|222635616|gb|EEE65748.1| hypothetical protein OsJ_21406 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query988
TAIR|locus:2178302930 TGH "AT5G23080" [Arabidopsis t 0.797 0.847 0.578 5e-236
UNIPROTKB|F1RNW7933 GPATCH1 "Uncharacterized prote 0.235 0.249 0.385 1.2e-35
MGI|MGI:1914721930 Gpatch1 "G patch domain contai 0.229 0.244 0.381 4.9e-35
UNIPROTKB|Q9BRR8931 GPATCH1 "G patch domain-contai 0.228 0.242 0.398 1.5e-34
UNIPROTKB|F1NUA0922 GPATCH1 "Uncharacterized prote 0.224 0.240 0.375 2.3e-34
UNIPROTKB|F1LU70906 Gpatch1 "Protein Gpatch1" [Rat 0.197 0.215 0.394 2.3e-34
UNIPROTKB|G1K130930 GPATCH1 "G patch domain-contai 0.229 0.244 0.389 6.8e-34
RGD|1308935896 Gpatch1 "G patch domain contai 0.197 0.217 0.394 8.2e-34
UNIPROTKB|F1P8I41111 GPATCH1 "Uncharacterized prote 0.228 0.203 0.394 8.7e-34
UNIPROTKB|Q24K12931 GPATCH1 "G patch domain-contai 0.229 0.243 0.389 1.4e-33
TAIR|locus:2178302 TGH "AT5G23080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2255 (798.9 bits), Expect = 5.0e-236, Sum P(2) = 5.0e-236
 Identities = 467/807 (57%), Positives = 552/807 (68%)

Query:     1 MDSDEEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFT 60
             M SDEED+VF GTPIEREEEI SR+KK++A ASG+LRTL  WKQEVTDEEGRRRFHGAFT
Sbjct:     1 MGSDEEDFVFHGTPIEREEEIASRKKKAVAGASGNLRTLPAWKQEVTDEEGRRRFHGAFT 60

Query:    61 GGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSLQF 120
             GG+SAGYYNTVGSKEGW PQ+FTSSR+NRA  ++QSI +FLDEDEKA+ EGKS   S QF
Sbjct:    61 GGYSAGYYNTVGSKEGWAPQSFTSSRQNRAGARKQSISDFLDEDEKADMEGKSLSASSQF 120

Query:   121 DTFGSTAAEFARKQAEKEQQQRPSAIPGPAPDELVVPATESIGVKLLLKMGWRRGRSIKD 180
             DTFG TAAE +RK AEKEQ +RPSAIPGP PDELV P +ESIGVKLLLKMGWRRG SIK+
Sbjct:   121 DTFGFTAAEHSRKHAEKEQHERPSAIPGPVPDELVAPVSESIGVKLLLKMGWRRGHSIKE 180

Query:   181 --SLYDARREGRKALLAFSSDDAKTAFNDA--EPVDLEQSVNDDGQLSRCTPVYVLNPKQ 236
               +  DARRE RKA LAF +D+      D+     ++E S+ +D ++S  TPVYVLNPKQ
Sbjct:   181 VRASSDARREARKAFLAFYTDENTKETPDSLVSETEVETSLGEDIKISESTPVYVLNPKQ 240

Query:   237 DLHGLGYDPYKNAPEFREKKRSRTSGHSKNGRTKALSIKDSLFGLKSGKVAPGFGIXXXX 296
             DLHGLGYDP+K+APEFREKKRSR S + + G  K LS+K+SLFG KSGK+APGFGI    
Sbjct:   241 DLHGLGYDPFKHAPEFREKKRSRMSANKEVGFRKPLSMKESLFGPKSGKIAPGFGIGALE 300

Query:   297 XXXXXXXXXXXXXXXFVDTYAEEDEEPSRLSKDVRKKLVGREQQDVLPGFILASKSDYQL 356
                            F  TY  EDE+P+R S D R +L  +E  DVLPGF  A  SDY +
Sbjct:   301 ELDVEDEDVYAGYD-FDQTYVIEDEQPARQSNDNRLRLTSKEH-DVLPGFGAAKNSDYSM 358

Query:   357 ERXXXXXXXXXXXXXXXFPGPLETDSKLAVXXXXXXXXXXDNNLKLLIEGVATLVARCGK 416
             ER               F GPLE ++K  V          DNNLKLLIEG AT V+RCGK
Sbjct:   359 ERFNPPIIPKDFVARHKFSGPLEAETKPTVSAPPEVPPPADNNLKLLIEGFATFVSRCGK 418

Query:   417 LFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQKRNDQTKLVSDGKSSETAQRLTA 476
             L+ED+SREKNQSN LF FL  GNGHDYYAR+LWE +QKR DQ+KL  D K S T Q++TA
Sbjct:   419 LYEDLSREKNQSNQLFDFLREGNGHDYYARRLWEEQQKRKDQSKLTLDVKVSPTVQKMTA 478

Query:   477 ETRGKLLGERPLERSARDSSFSVGSENGIQIQFNLSDTFTKSASFNELPEVATPFQDDPA 536
             ETRG LLGE+PL+RS +++  S  S    Q   NLSDTFTKSAS  E  +   PF+DDPA
Sbjct:   479 ETRGSLLGEKPLQRSLKETDTSASSGGSFQFPTNLSDTFTKSASSQEAADAVKPFKDDPA 538

Query:   537 KQERFERFLKEKYQGGLRSTDXXXXXXXXXXXXXXXXLDFXXXXXXXXXXXXXXXGSIST 596
             KQERFE+FLKEKY+GGLR+TD                LDF                  +T
Sbjct:   539 KQERFEQFLKEKYKGGLRTTDSNRVNSMSESARAQERLDFEAAAEAIEKGKAYKEVRRAT 598

Query:   597 EQLLGSSGAGRMLFTSGGLEQVKDTQAEDLTNKKVYPRREEFQWRPSPILCKRFDLIDPY 656
             EQ L    AG + FTSGG EQ+KDT   D+ + K YP+REEFQWRPSP+LCKRFDL DP+
Sbjct:   599 EQPLDFL-AGGLQFTSGGTEQIKDTGVVDMKSSKTYPKREEFQWRPSPLLCKRFDLPDPF 657

Query:   657 IGKPPPAPRIKSKMDSLIFISDSVKAPRLEESVAANNDRYSAPQSDAPEISRDVTKEIEA 716
             +GK PPAPR ++KMDSL+F+ D+VKA    +            +S  P+    + +E E 
Sbjct:   658 MGKLPPAPRARNKMDSLVFLPDTVKAASARQ----------VSESQVPKKETSI-EEPEV 706

Query:   717 DIQVENVERPVDLYKAIFSDDS-DDEVETFNPKKVEDPEKKIEVANTALSHLIAGDFLES 775
             +++VENVERPVDLYKAIFSDDS DDE +  N K  E  EKK E A T L+ LIAGDFLES
Sbjct:   707 EVEVENVERPVDLYKAIFSDDSEDDEDQPMNGKIQEGQEKKNEAAATTLNRLIAGDFLES 766

Query:   776 LGKELGLEVPHESPPYPTSKAKNPAQK 802
             LGKELG EVP E      SK ++ + K
Sbjct:   767 LGKELGFEVPMEEEIKSRSKPEDSSDK 793
GO:0003723 "RNA binding" evidence=ISS;TAS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006396 "RNA processing" evidence=ISS;RCA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009734 "auxin mediated signaling pathway" evidence=IMP
GO:0009926 "auxin polar transport" evidence=IMP
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IMP
GO:0070878 "primary miRNA binding" evidence=IDA
GO:0070883 "pre-miRNA binding" evidence=IDA
UNIPROTKB|F1RNW7 GPATCH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1914721 Gpatch1 "G patch domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BRR8 GPATCH1 "G patch domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUA0 GPATCH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LU70 Gpatch1 "Protein Gpatch1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G1K130 GPATCH1 "G patch domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308935 Gpatch1 "G patch domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8I4 GPATCH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K12 GPATCH1 "G patch domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query988
pfam0771387 pfam07713, DUF1604, Protein of unknown function (D 5e-37
smart0064854 smart00648, SWAP, Suppressor-of-White-APricot spli 2e-10
pfam0180554 pfam01805, Surp, Surp module 2e-10
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 2e-05
PRK12678 672 PRK12678, PRK12678, transcription termination fact 8e-04
TIGR01622 457 TIGR01622, SF-CC1, splicing factor, CC1-like famil 0.004
>gnl|CDD|149010 pfam07713, DUF1604, Protein of unknown function (DUF1604) Back     alignment and domain information 
 Score =  133 bits (337), Expect = 5e-37
 Identities = 54/87 (62%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 36  LRTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTFTSSRKNRAEVKQQ 95
            + +  WKQEVTDE GRRRFHGAFTGGFSAGY+NTVGSKEGWTP TF SSR+NRA+   Q
Sbjct: 1   KKYVPIWKQEVTDERGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSTFRSSRQNRAKTTTQ 60

Query: 96  SILNFLDEDEKAEF-EGKSFGTSLQFD 121
              +F+DE++  E+ EG+   T  +FD
Sbjct: 61  RPEDFMDEEDLGEYGEGQRLRTRAEFD 87

This family is found at the N-terminus of several eukaryotic RNA processing proteins. Length = 87
>gnl|CDD|197818 smart00648, SWAP, Suppressor-of-White-APricot splicing regulator Back     alignment and domain information
>gnl|CDD|216714 pfam01805, Surp, Surp module Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 988
KOG2138883 consensus Predicted RNA binding protein, contains 100.0
PF0771387 DUF1604: Protein of unknown function (DUF1604); In 100.0
PF0180555 Surp: Surp module; InterPro: IPR000061 SWAP is der 98.22
PF0158545 G-patch: G-patch domain; InterPro: IPR000467 The D 97.95
smart0064854 SWAP Suppressor-of-White-APricot splicing regulato 97.76
smart0044347 G_patch glycine rich nucleic binding domain. A pre 97.49
PF1265677 G-patch_2: DExH-box splicing factor binding site 96.83
KOG0965988 consensus Predicted RNA-binding protein, contains 96.45
KOG2809326 consensus Telomerase elongation inhibitor/RNA matu 94.67
KOG1996378 consensus mRNA splicing factor [RNA processing and 94.0
KOG0151877 consensus Predicted splicing regulator, contains R 91.8
KOG2384223 consensus Major histocompatibility complex protein 91.63
KOG4315455 consensus G-patch nucleic acid binding protein [Ge 89.59
KOG2985306 consensus Uncharacterized conserved protein [Funct 89.08
KOG1847 878 consensus mRNA splicing factor [RNA processing and 84.05
KOG1847878 consensus mRNA splicing factor [RNA processing and 81.01
KOG2985306 consensus Uncharacterized conserved protein [Funct 80.77
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-155  Score=1308.24  Aligned_cols=844  Identities=30%  Similarity=0.399  Sum_probs=613.4

Q ss_pred             CCCCCceEecCCCCCchhHhhhhhhhhhhhcCCcccCCCCcccccccccccccccccccCccccccccccCCCCcccCcc
Q 001970            3 SDEEDYVFFGTPIEREEEITSRRKKSIAEASGHLRTLAPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQTF   82 (988)
Q Consensus         3 ~dee~fv~yGTPL~p~de~~~rk~k~v~d~~g~~~~vPiwkQeVrDE~GRRRFHGAFTGGFSAGYfNTVGSKEGWtPstF   82 (988)
                      +++|+||+|||||++++++.++.+|          +|+||+|+|+||+|||||||||||||||||||||||||||||+||
T Consensus         2 d~eedlv~yGtple~~ee~~sr~KK----------pvai~dQivtDEkGkRRFHGAFTGGfSAGywNTVGSkEGWtPQtF   71 (883)
T KOG2138|consen    2 DEEEDLVRYGTPLEALEEDVSRAKK----------PVAIEDQIVTDEKGKRRFHGAFTGGFSAGYWNTVGSKEGWTPQTF   71 (883)
T ss_pred             cchhHHHHcCCCCCchhhccccccC----------cchhhhhhhhccccceeecccccCcccccceeccccccCcCcccc
Confidence            4688999999999998888888766          689999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhHHhhcCcccccCchhhhhcccccccccccccccCCchHHHHHHHHHHhhhcCCCCCCC-CCCCCcccCCCch
Q 001970           83 TSSRKNRAEVKQQSILNFLDEDEKAEFEGKSFGTSLQFDTFGSTAAEFARKQAEKEQQQRPSAIPG-PAPDELVVPATES  161 (988)
Q Consensus        83 ~SSR~~Ra~~~~QrpEDFMDEEDl~E~~~~~l~t~~~fd~fg~ta~e~ar~~~~~~~~~~~s~i~g-~i~~dLi~p~~es  161 (988)
                      +|||+|||..+.|+||||||||||+|||+. ++...+||+||+++.+..++ ....+..++++||| |||++||.|+.++
T Consensus        72 ~SSRqeRa~~~kq~~eDFMDeedlgefGia-~~ai~q~d~Fg~~a~q~~kr-k~~q~~~~tsaipg~pvledLv~Pvs~s  149 (883)
T KOG2138|consen   72 KSSRQERASSKKQLPEDFMDEEDLGEFGIA-PQAIRQTDEFGNEAEQKQKR-KLMQPELGTSAIPGLPVLEDLVRPVSDS  149 (883)
T ss_pred             ccchhhhhhhhhcChhhhcchHHHHhhccC-chhhhhHHhhhhhhHHHHHH-HHhchhhcCCCCCCCccHHHHhhhhhhh
Confidence            999999999999999999999999999853 44456679999999876643 34445678899999 8999999999999


Q ss_pred             HHHHHHHHhCcCCCCccchh-hHHHHH-HHHHhhhccCccchhcccCCCCCccccccccCCCccCC-CCCceecCCCCCC
Q 001970          162 IGVKLLLKMGWRRGRSIKDS-LYDARR-EGRKALLAFSSDDAKTAFNDAEPVDLEQSVNDDGQLSR-CTPVYVLNPKQDL  238 (988)
Q Consensus       162 iGvkLLkkMGWreGQGIGp~-~~k~Rr-~ark~~l~l~~~~~~~~~~~se~~e~de~~~~~l~ap~-dtp~~~~~pK~d~  238 (988)
                      |||+||++||||+||||||+ .++.+| ++|..         .........++.++++..+++|++ ++-++.|+||+|+
T Consensus       150 IgvrlLrsMGWr~GqgIgpr~~r~~krk~~r~~---------k~~s~~~fd~e~~dk~~pd~tfs~~dve~~~~tp~~~~  220 (883)
T KOG2138|consen  150 IGVRLLRSMGWREGQGIGPRQTRKEKRKTARGS---------KKESKGEFDSENEDKDDPDITFSPDDVEPIFYTPKENR  220 (883)
T ss_pred             HHHHHHHHhcCccCCCcCchhhcchhhccccCC---------cccccccccccccccCCccceeccccccceeccccccc
Confidence            99999999999999999992 233332 22210         000001112333444555666654 5555669999999


Q ss_pred             cccccCCCCCchhhHHhhhccccCCCCCCCccccccc-ccccccCCCCCCCceeeeecCCCCCCCccccCCCCCcccccc
Q 001970          239 HGLGYDPYKNAPEFREKKRSRTSGHSKNGRTKALSIK-DSLFGLKSGKVAPGFGIGALEEYDAEDEDLYGADYEFVDTYA  317 (988)
Q Consensus       239 ~GLGY~p~~~a~ef~~~~~~~~s~~~~~~~~~~~~~~-~~l~~~k~g~~~~aFGVGALED~~~DDeDIY~~~~~~~~~~v  317 (988)
                      |||+|.|+...+.+..           .+.....-+. .+.++  .|+.||||||||||+   ||||||+ +|+++.+++
T Consensus       221 ~g~~y~gLnp~q~L~g-----------ssg~~~~pfkh~~ef~--kgi~gqaFGVGAfEE---EDEdVYA-~ydlsqydf  283 (883)
T KOG2138|consen  221 HGMSYSGLNPDQILSG-----------SSGSSAKPFKHGNEFG--KGIRGQAFGVGAFEE---EDEDVYA-RYDLSQYDF  283 (883)
T ss_pred             ccccccccCcchhhcc-----------ccccccchhcccchhc--ccccccccccccccc---cccchhh-ccccchhee
Confidence            9999999876544321           1111111121 12232  388899999999997   9999999 899998888


Q ss_pred             cccCCcCccccccccccccccCCCCCCCeeecccCCcccCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 001970          318 EEDEEPSRLSKDVRKKLVGREQQDVLPGFILASKSDYQLERFDPPVVPKDFVPHHKFPGPLETDSKLAVPLPPEIPPPED  397 (988)
Q Consensus       318 ~~d~~~~~~~~~~k~~~~~~~~dg~L~GFvlA~~~~~~~k~f~PP~VP~df~P~h~f~~~~d~~~~~~~~~pp~~ppp~D  397 (988)
                      +.++++.+.+..    ...+.+ .+|+||.++.++++..+.|+||.||+||+|.|+|.                   |.|
T Consensus       284 sldd~~pk~se~----~~~k~~-kvldgFs~a~k~~~s~k~yapp~lPrdFr~~~rp~-------------------Pmd  339 (883)
T KOG2138|consen  284 SLDDKKPKQSEQ----QHVKQR-KVLDGFSLANKPLVSQKPYAPPILPRDFRPRHRPA-------------------PMD  339 (883)
T ss_pred             ecccccchhhHH----Hhhhhh-ccccccccCCCccccccCCCCCCCCcccCCccCCC-------------------cch
Confidence            777776542211    112223 69999999999999999999999999999999863                   233


Q ss_pred             hhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccCCCCchhHHHHHHHHHHhhccccccccCCCCchhhccCChh
Q 001970          398 NNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNGHDYYARKLWEARQKRNDQTKLVSDGKSSETAQRLTAE  477 (988)
Q Consensus       398 ~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsgg~g~~yy~rkl~e~~~k~~~~~~~~~~~~~~~~r~~L~A~  477 (988)
                      .+        ++.+.+||++++++..++++-|+.|.|+.-|+ ++ |++++||+|+++..+..+..+..........+++
T Consensus       340 ~~--------~~~~s~~~kly~~~~~~khqlNa~qra~~lGe-~~-q~~~t~eeq~kr~~~k~~~k~~k~~~~~r~~~le  409 (883)
T KOG2138|consen  340 KE--------RAQKSETAKLYKRSGLGKHQLNADQRAQILGE-QQ-QEEKTAEEQPKRNPFKDHSKSMKQATDLRAAQLE  409 (883)
T ss_pred             hh--------HhhhhhhcccccccccchhhcCHHHHHHhhcc-ch-hhhhhhhhhhhccchHhhhHHHHhhhhHHHHHHh
Confidence            22        45688999999999999999999999999988 77 9999999999999988877666666566666778


Q ss_pred             hhhcccCCCCCCccccCCCcccCCccccccccccCCccccccccccCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCCCC
Q 001970          478 TRGKLLGERPLERSARDSSFSVGSENGIQIQFNLSDTFTKSASFNELPEVATPFQDDPAKQERFERFLKEKYQGGLRSTD  557 (988)
Q Consensus       478 ~Rg~~LGE~pl~~~~~~~~~~~s~kd~~~~q~~l~~~~~k~~s~~~~~~~fkPF~~DpaKQ~RYe~fL~~~~~gg~~~~~  557 (988)
                      .||.++|+.++..+....-...+..  ...+. -..+++...+..  ..+|+||++||+||.||++||..+++|+++.+.
T Consensus       410 ~rg~~~~~~~errsl~~~~a~e~~~--~~~er-~~~tat~~as~~--~~n~kpF~dDpaKQ~RyeeFl~~k~~g~k~~~~  484 (883)
T KOG2138|consen  410 ARGLAQNAQSERRSLSPAAAAEACS--WNMER-GGGTATLKASAM--NSNFKPFADDPAKQKRYEEFLVHKKQGQKDALE  484 (883)
T ss_pred             hccccccCchhhhhhhhhhHHhhhh--hhhhc-cCCccccchhhh--hhccCCCccCHHHHHHHHHHHHHHHhccccccc
Confidence            8999999998887643211110000  00000 112333333222  238999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhcccccccccccccCCccccccchHHhhhhccCCC--cc
Q 001970          558 SGGASAMSEAARARERLDFEAAAEAIEKAKQRKEGSISTEQLLGSSGAGRMLFTSGGLEQVKDTQAEDLTNKKVYP--RR  635 (988)
Q Consensus       558 ~~~~~~mSe~er~rE~~EF~~AA~ife~g~~yk~~k~~~~~~~~~~~~~~sRFTsa~~~~~~~~~~e~a~k~~MfG--tR  635 (988)
                      .|++++||+|+|++|+.||++||+|+.+++.|+..++.+.+...|  ..--.|++++.++..+..  .|++|.|||  ||
T Consensus       485 r~~~~smsewere~erdef~~aae~~~~~~~l~~~r~a~e~~ed~--a~~vq~e~gg~~~v~dk~--~av~~e~~~~~tR  560 (883)
T KOG2138|consen  485 RCLDPSMSEWERERERDEFARAAELYASSHSLLSSRFAHEKEEDD--ADQVQVERGGENDVGDKQ--SAVKMEMFGKLTR  560 (883)
T ss_pred             ccCCcchhHHHHhhhhHHHHHHHHHHhhhhhhhhhhhcccccccc--ccceeeccCcccccCccc--chhhHhhcccccc
Confidence            999999999999999999999999987777776665543332222  111245555444444433  368899999  79


Q ss_pred             cccccccCcccccccCCCCCCCCCCCCc-cccc-CCccccccccccccccchhhhhcccCCCCCCCCCCCCccchhhhhh
Q 001970          636 EEFQWRPSPILCKRFDLIDPYIGKPPPA-PRIK-SKMDSLIFISDSVKAPRLEESVAANNDRYSAPQSDAPEISRDVTKE  713 (988)
Q Consensus       636 e~~eW~P~~LLCKRFNVpdP~~G~~~~~-~~~~-sk~ds~~~ls~~v~~~~~~~~~~~~~~~~~~~q~~~~~~~~di~~~  713 (988)
                      ++|+|||+.|||||||||+||||+..++ |+.+ .||++|+||+++|.+...-.       ++. ++  +..-.++-...
T Consensus       561 ~~f~W~Pd~LLcKRfnvpdPy~gs~l~~~prlkk~k~svfdfL~d~v~asa~~~-------~ps-s~--~vpek~e~~~s  630 (883)
T KOG2138|consen  561 DTFEWHPDKLLCKRFNVPDPYPGSTLVGLPRLKKDKYSVFDFLTDPVTASAPTT-------QPS-SE--KVPEKREPDKS  630 (883)
T ss_pred             cccccccchhhhhhcCCCCCCCCccccCchhhhhccchhheecccccccccccc-------Ccc-cc--ccccccCCCCC
Confidence            9999999999999999999999977666 5555 99999999999987744221       111 11  01111111244


Q ss_pred             hhcccccccccccccchhhhhcCCCcccccc-CCCCCCCCchhhHHHHHHHhhhhhhhhHHHHhhcccCccCCCCCCCCC
Q 001970          714 IEADIQVENVERPVDLYKAIFSDDSDDEVET-FNPKKVEDPEKKIEVANTALSHLIAGDFLESLGKELGLEVPHESPPYP  792 (988)
Q Consensus       714 ~~~~~q~e~~erpvdl~KAIFsddsdd~~~~-~~~~~~~~~~~~~e~a~~~l~~l~a~dfleslgkelg~~vp~~~~~~~  792 (988)
                      -.+..+.|++.|++++||+||++|+.|.+++ .+...++...++.+++.++||++|+|||++++++|++.+|+.. -...
T Consensus       631 p~~~~~~e~k~r~k~d~k~efs~d~~d~~e~peq~~~~~~n~kk~~A~k~sln~~IfgD~de~~~~es~~e~~~~-ee~~  709 (883)
T KOG2138|consen  631 PKPSRWDESKHRKKEDSKSEFSSDARDKAEPPEQQSSPLVNKKKEHAPKVSLNQTIFGDVDEQAEGESSRESMDL-EEAI  709 (883)
T ss_pred             CCCCccchhhccCccchhhhhhccccCcccchhhcccccccccccccccchHHHHHhccchhhhcccccCccHHH-HHHH
Confidence            4566788899999999999999999998855 4444455588899999999999999999999999999999876 1100


Q ss_pred             CCcCCCcccccc---ccccCCCCCCccccCCCCCccccccccccccccCcchhhhhhccCCccccCCCCCCCCCcccccc
Q 001970          793 TSKAKNPAQKET---SNANAGGNANILPVDNKSSSTRNAVSRTSIERWMPDQRETAQEGKSQKNEFTPGNPLNVSDKYKE  869 (988)
Q Consensus       793 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~  869 (988)
                        -+.+...+++   +....-....+..++++-                                            .+.
T Consensus       710 --~~ss~~e~s~~~ed~r~dre~~~~ek~ee~~--------------------------------------------~s~  743 (883)
T KOG2138|consen  710 --FASSSDEKSSSSEDERGDREDDQAEKGEENF--------------------------------------------QSS  743 (883)
T ss_pred             --hhcccchhhcccCcccccchhhhhhhhhhhh--------------------------------------------ccC
Confidence              0111222221   111110000011110000                                            001


Q ss_pred             ccccccccCcccchhhhhccccccccC--CCCCCCCchHHHhhhhhccccCCCCCCCCCChhh----hhcccccccCCCC
Q 001970          870 TDKYKGEIGCERSKEDEKSKLTSSHHK--NRSSNSSSEDERSRKRSRRHRYSSDSYSDSSSEY----RDQHHSRSKGRSK  943 (988)
Q Consensus       870 ~~~~~~~~~~~~~~~~~k~k~~~~~~~--~~ss~~~~~~~~~r~~s~~~~~~~~s~s~~~~~~----~d~~~~~~~~r~~  943 (988)
                      ....++|++.-+   -.++.-|.....  +.++...+++|+-++|=...+|+-.|.+.+...+    ++++.++++..++
T Consensus       744 ~~t~l~e~s~~k---l~~vpk~qe~~~~~diq~~e~~~~e~fgprlpp~~kpnaset~~~~l~ekh~kkK~k~kk~kekr  820 (883)
T KOG2138|consen  744 QDTDLGETSSVK---LALVPKPQEPPPSFDIQKMEIDEREEFGPRLPPVFKPNASETLEVPLKEKHKKKKDKHKKKKEKR  820 (883)
T ss_pred             Cccccccccchh---hhcccCccCCCCccchhhhccChhhhcCCCCCCccCCCchhhhhhhHHHHhhhhhhhhHHHHHHH
Confidence            111222222211   123333444443  7788888899999999998899988888888765    2444444444444


Q ss_pred             CCccccchhhhhccc----cCCCCCCCCcCcchHHHHHHHHHHhhhccC
Q 001970          944 GSSREKSSSRRKHRK----HRDRDSPRRSHNDAEKERTARKKDKKRRRD  988 (988)
Q Consensus       944 ~ss~ek~~s~kk~~~----~~~~~s~~~s~~~~~~~~~~~~~ek~~~~~  988 (988)
                      .+| ||++|+|||++    |++..+.|+|.+|++.+.+.+.|||+++++
T Consensus       821 ~ks-ekskkhkkhkk~~~~k~rk~kkSss~~Ssd~sdk~s~kekk~~~~  868 (883)
T KOG2138|consen  821 RKS-EKSKKHKKHKKKGKQKNRKPKKSSSSESSDSSDKQSDKEKKDVSP  868 (883)
T ss_pred             Hhh-hhcccchhhcccchhhccCccccccccccccchhhhhhhhhccCh
Confidence            444 88888888888    888888889999999999999999998763

>PF07713 DUF1604: Protein of unknown function (DUF1604); InterPro: IPR011666 This domain is found at the N terminus of several eukaryotic RNA processing proteins (e Back     alignment and domain information
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster Back     alignment and domain information
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function Back     alignment and domain information
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator Back     alignment and domain information
>smart00443 G_patch glycine rich nucleic binding domain Back     alignment and domain information
>PF12656 G-patch_2: DExH-box splicing factor binding site Back     alignment and domain information
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only] Back     alignment and domain information
>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1996 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only] Back     alignment and domain information
>KOG2985 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1847 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1847 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG2985 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query988
2e60_A101 SFRS8 protein, splicing factor, arginine/serine-ri 2e-17
1ug0_A88 Splicing factor 4; SURP domain, structural genomic 4e-17
1x4o_A78 Splicing factor 4; structural genomics, NPPSFA, na 6e-16
2dt6_A64 Splicing factor 3 subunit 1; structure genomics, S 3e-14
2e5z_A90 SFRS8 protein, splicing factor, arginine/serine-ri 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 1e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 2e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 4e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 1e-04
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 5e-04
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 9e-04
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 Back     alignment and structure
 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 385 AVPLPPEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGNG-HDY 443
            + +P ++  P    +  +IE  A+ V R G  FE + + K   N  F FL   +  + Y
Sbjct: 12  GLSVPSDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPY 71

Query: 444 YARKLWEARQKRNDQTKLVSDGKSSETA 471
           Y       ++ R          +  ++ 
Sbjct: 72  YKFIQKAMKEGRYTVLAENKSDEKKKSG 99
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1 Length = 88 Back     alignment and structure
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1 Length = 78 Back     alignment and structure
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Length = 64 Back     alignment and structure
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query988
1x4o_A78 Splicing factor 4; structural genomics, NPPSFA, na 99.13
1ug0_A88 Splicing factor 4; SURP domain, structural genomic 98.95
2e60_A101 SFRS8 protein, splicing factor, arginine/serine-ri 98.82
2e5z_A90 SFRS8 protein, splicing factor, arginine/serine-ri 98.82
2dt6_A64 Splicing factor 3 subunit 1; structure genomics, S 98.59
2dt7_B85 Splicing factor 3 subunit 1; structure genomics, S 97.43
1x4p_A66 Putative splicing factor, arginine/serine-rich 14; 95.97
4dgw_B152 PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A 88.89
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1 Back     alignment and structure
Probab=99.13  E-value=3.7e-11  Score=107.20  Aligned_cols=68  Identities=37%  Similarity=0.529  Sum_probs=61.7

Q ss_pred             CCCCCCCCCCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccC--CCCchhHHHHHHHHHH
Q 001970          386 VPLPPEIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTG--GNGHDYYARKLWEARQ  453 (988)
Q Consensus       386 ~~~pp~~ppp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsg--g~g~~yy~rkl~e~~~  453 (988)
                      +.+++.++||.|+..|.+|+.+|.+|+++|..||++.+++++.||.|+||.+  ...|.||+||||+.++
T Consensus         3 ~~~~~~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~   72 (78)
T 1x4o_A            3 SGSSGKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRK   72 (78)
T ss_dssp             CCCCSCSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHC
T ss_pred             CCCCCCCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHh
Confidence            3567778999999999999999999999999999999999999999999984  4679999999998744
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1 Back     alignment and structure
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 988
d1x4oa165 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus m 4e-15
d1ug0a_88 a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus muscu 1e-14
d2dt6a163 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, 9e-13
d2dt7b184 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, 2e-09
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 65 Back     information, alignment and structure

class: All alpha proteins
fold: Surp module (SWAP domain)
superfamily: Surp module (SWAP domain)
family: Surp module (SWAP domain)
domain: Splicing factor 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.7 bits (168), Expect = 4e-15
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 391 EIPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTGGN--GHDYYARKL 448
           ++ PPED   K L E +A  +A  G   E I+ + N+ N  FSFL   N  G+ YY +KL
Sbjct: 1   KVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKL 60

Query: 449 WEARQ 453
            E R+
Sbjct: 61  DEFRK 65
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63 Back     information, alignment and structure
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query988
d1x4oa165 Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10 98.94
d1ug0a_88 Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10 98.68
d2dt6a163 Splicing factor 3 subunit 1, SF3A1 {Human (Homo sa 98.45
d2dt7b184 Splicing factor 3 subunit 1, SF3A1 {Human (Homo sa 97.44
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: Surp module (SWAP domain)
superfamily: Surp module (SWAP domain)
family: Surp module (SWAP domain)
domain: Splicing factor 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.4e-10  Score=96.56  Aligned_cols=61  Identities=41%  Similarity=0.607  Sum_probs=55.8

Q ss_pred             CCCCCChhhHHHHHhhHHHHhhhCcchhhhHHhhhcCCCCcccccC--CCCchhHHHHHHHHH
Q 001970          392 IPPPEDNNLKLLIEGVATLVARCGKLFEDISREKNQSNPLFSFLTG--GNGHDYYARKLWEAR  452 (988)
Q Consensus       392 ~ppp~D~~~R~~i~G~a~lvar~Gk~~Ed~~~ek~k~np~Fdflsg--g~g~~yy~rkl~e~~  452 (988)
                      +.||.|+..+.+|+.+|.+|+++|..||++.+++++.||.|+||..  ...|.||+|+||+.+
T Consensus         2 V~pP~d~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~~~~~~~~~YYr~kl~~~~   64 (65)
T d1x4oa1           2 VSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFR   64 (65)
T ss_dssp             SCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCceeecCCCCCCcHHHHHHHHHHh
Confidence            5788999999999999999999999999999999999999999963  466899999999764
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure