Citrus Sinensis ID: 002437
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 921 | 2.2.26 [Sep-21-2011] | |||||||
| P40983 | 402 | Uncharacterized protein i | N/A | no | 0.286 | 0.656 | 0.283 | 5e-22 | |
| Q5V0G6 | 211 | Thiamine-phosphate syntha | yes | no | 0.131 | 0.573 | 0.310 | 3e-08 | |
| Q3IP34 | 214 | Thiamine-phosphate syntha | yes | no | 0.118 | 0.509 | 0.347 | 1e-07 | |
| Q8KD79 | 204 | Thiamine-phosphate syntha | yes | no | 0.173 | 0.784 | 0.25 | 1e-06 | |
| Q8RI59 | 206 | Thiamine-phosphate syntha | yes | no | 0.187 | 0.839 | 0.292 | 3e-06 | |
| Q18GX9 | 223 | Thiamine-phosphate syntha | yes | no | 0.171 | 0.708 | 0.269 | 7e-06 | |
| Q39PQ9 | 457 | tRNA modification GTPase | yes | no | 0.173 | 0.350 | 0.295 | 1e-05 | |
| A5CY46 | 459 | tRNA modification GTPase | no | no | 0.161 | 0.324 | 0.284 | 1e-05 | |
| Q5WH87 | 209 | Thiamine-phosphate syntha | no | no | 0.191 | 0.842 | 0.252 | 2e-05 | |
| Q746Q3 | 456 | tRNA modification GTPase | yes | no | 0.153 | 0.309 | 0.317 | 2e-05 |
| >sp|P40983|YOR6_CALSR Uncharacterized protein in xynA 3'region (Fragment) OS=Caldicellulosiruptor sp. (strain Rt8B.4) PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 50/314 (15%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFS----------------- 407
F LV++G++ GKS++IN +LG L GV+P T+ IT + +S
Sbjct: 48 FYLVVLGQFKRGKSTLINYMLGANLLPTGVLPLTSVITKIYYSPEVKVDVIFESGVKKEI 107
Query: 408 -----DLASEEQ-----QRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTE 457
DL E+ Q+C D I Y + K+++IVDTPG + Q +T
Sbjct: 108 PVDELDLYCTERGNPKNQKC---VDTIEIGYPFDFLNKDVVIVDTPGIGSVYQHNTDVTY 164
Query: 458 EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517
EF+ ++D V+FV+S D P+TE E FL + K+ FV+NKSDL E+EE +SF
Sbjct: 165 EFIDKSDAVVFVLSVDPPITEVEKQFLLKIAENVDKIFFVINKSDLTSKN-EIEEIVSFT 223
Query: 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLL 577
+ N+ I+P+SA+ LE K+S +E + S I EK L
Sbjct: 224 TNVIKDITKKGNINIFPLSAKMALEGKIS--------KNEEMIEKSCVEI-----FEKEL 270
Query: 578 YSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKE 637
FL +E+ ++++ + ++ + L CE + D + + E I+ E
Sbjct: 271 KQFL------KEEKGKIQILSNLKSLDGFLGVCEAFLENDMKLKIMPVKQLEENIEKFNE 324
Query: 638 YVMKMESESISWRR 651
++ ++ I +
Sbjct: 325 FLERVNQNKIEIYK 338
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Caldicellulosiruptor sp. (strain Rt8B.4) (taxid: 28238) |
| >sp|Q5V0G6|THIE_HALMA Thiamine-phosphate synthase OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=thiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 97 AGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAA 155
AG +++ EA+ VG+V L + + YE L+ + ++ + F++ +R+D+A
Sbjct: 16 AGRTTDEIVAEAIESGVGVVQLREKNRTARERYELGQKLRELTREADVTFVVNDRIDLAQ 75
Query: 156 AVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL-- 213
A++A GV L D LP VAR+ + D ++GR+V T++ A A+++ GAD+L
Sbjct: 76 AIDADGVHLGDDDLPVSVARDILGDD-------AVIGRSVSTVEDAREAATA-GADYLGV 127
Query: 214 VCCFGEGQKADV 225
F G K D+
Sbjct: 128 GAVFATGSKDDI 139
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Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (taxid: 272569) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q3IP34|THIE_NATPD Thiamine-phosphate synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=thiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 97 AGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIA-ERVDIAA 155
AG ++++ A+ V IV L A+ + YE L+++ +D + L+ +R+D+AA
Sbjct: 17 AGRSTAEVVEAAIRGGVDIVQLRDKTATARERYEVGTELRTLTRDAGVPLVVNDRLDLAA 76
Query: 156 AVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL 213
A++A GV L D LP VAR + +VGR+V T DAA A + GAD+L
Sbjct: 77 AIDADGVHLGDDDLPIEVAREQLGSD-------AIVGRSVSTPDAAREAEQA-GADYL 126
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Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) (taxid: 348780) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8KD79|THIE_CHLTE Thiamine-phosphate synthase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=thiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAAAVN 158
+ ++L A+ G+V L ASG+ +YE A ++++ ++ ALF++ +RVDIA AV+
Sbjct: 17 NPVELARMALQGGAGMVQLRRKTASGQELYEWAIRIQALCSEQQALFIVNDRVDIAMAVH 76
Query: 159 ASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG 218
A GV L Q LPA AR + ++++ V + + AA +S G + F
Sbjct: 77 ADGVHLGQQDLPASAARALLA---PDAIIGVSVSNATEAIKAAEEGASYIGVGHIFPTFS 133
Query: 219 EGQKADVIENSLFTNV----KIPIFIMNASPLVDVSKFLKSGASGFVI 262
+ + ++ + + + ++P+ + + ++ +++GASG +
Sbjct: 134 KDKPSEPLGTASIRPIGRAAQLPVIAIGGIGHDNAAEVIRAGASGIAV 181
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Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8RI59|THIE_FUSNN Thiamine-phosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=thiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAA 156
G D I+E++ V IV L S K Y+ A +K + K+ LF+I +R+DI A
Sbjct: 19 GKDFYKCIEESIKGGVKIVQLREKNISTKDFYKKALKVKEICKNYEVLFIINDRLDITQA 78
Query: 157 VNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL--V 214
V A GV L +P AR +KD L+G + ++ A A GAD++
Sbjct: 79 VEADGVHLGQSDMPIEKAREILKDKF-------LIGATARNIEEAEKAQLL-GADYIGSG 130
Query: 215 CCFGEGQK--ADVIE----NSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268
FG K A +E + +VKIP+F + + +V G G V S+
Sbjct: 131 AIFGTSTKDNAKRLEMEDLKKIVNSVKIPVFAIGGININNVWMLKNIGLQG-VCSVS--- 186
Query: 269 LFNDGVLSQMFCANGTTN 286
G+LS+ C N
Sbjct: 187 ----GILSEKDCKKAVEN 200
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Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q18GX9|THIE_HALWD Thiamine-phosphate synthase OS=Haloquadratum walsbyi (strain DSM 16790) GN=thiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 97 AGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAA 155
AG ++++ A+ + IV L E + + YE +++ + FL+ +RVD+AA
Sbjct: 17 AGRSTTEIVEAAIDGGIDIVQLREKETTARRRYEIGQTVRTQTAQAGVTFLVNDRVDLAA 76
Query: 156 AVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL-- 213
AVNA GV L D LP AR + ++GR+V T AA A GAD+L
Sbjct: 77 AVNADGVHLGDDDLPVTAAREVLGQD-------AIIGRSVSTPAAAQRAEDI-GADYLGV 128
Query: 214 VCCFGEGQKADVIEN---------SLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVI 262
+ G K E+ ++ V IP+ + + ++ +++GA G +
Sbjct: 129 GAVYPTGTKDVTAESAEIGPKTVTAITDAVSIPVIGIGGITPSNTTEVIRAGADGVAV 186
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Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Haloquadratum walsbyi (strain DSM 16790) (taxid: 362976) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q39PQ9|MNME_GEOMG tRNA modification GTPase MnmE OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=mnmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 313 VAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGE 372
V F+ F D E ++ V +EA ++AS +EE+ D + + ++I G+
Sbjct: 175 VEAFIDFPDDE---VDPASRVEIEA--KAREASGRIEELLEGFDEGRVLRDGVSVLIAGK 229
Query: 373 YNSGKSSVINALLG-KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431
N GKSS++N LL KR + V TT +I EE P
Sbjct: 230 PNVGKSSLLNTLLQEKRAIVTSVPGTTRDII---------EEVVNVRGLP---------- 270
Query: 432 PILKEMIIVDTPGT----NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT 487
+ ++DT G +V+ Q RLT E +P+ADL+LFV+ RP + + + L
Sbjct: 271 -----LRMLDTAGIRETEDVVEQEGVRLTLEKIPQADLILFVLDGSRPFDDDDRMIL--A 323
Query: 488 QQWKKKVVFVLNKSDL 503
+++V+ V NKSDL
Sbjct: 324 ALAERRVIVVTNKSDL 339
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Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799) EC: 3 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|A5CY46|MNME_PELTS tRNA modification GTPase MnmE OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mnmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 339 DVIKKASPLMEEVSLLI---DAVSQIDEPFLLVIVGEYNSGKSSVINALLGK-RYLKDGV 394
D+++ L+EE+ ++ +A E VI+G N GKSS++NALL + R + +
Sbjct: 192 DILRSGEDLIEEIKEIVRRAEAGKIYREGISTVIIGRPNVGKSSLLNALLRENRAIVTDI 251
Query: 395 VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQR 454
TT +I +YI P + I+DT G +R
Sbjct: 252 PGTTRDIIE--------------------EYINIRGIP----LKIIDTAGLRETGDAVER 287
Query: 455 L----TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510
+ E V +ADLVL V+ A R LTE + + + KKV+F++NK+D+ +
Sbjct: 288 IGVEKAREAVEQADLVLLVLDAARGLTEEDYAIIE--KVGGKKVIFIVNKADVREKKISS 345
Query: 511 EEA 513
E A
Sbjct: 346 EGA 348
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Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438) EC: 3 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|Q5WH87|THIE_BACSK Thiamine-phosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=thiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAAA 156
G D +++++EA+ V I+ L +S K+V E A LK + D + F++ + +D+A A
Sbjct: 17 GRDVVEVMEEAIQGGVDIIQLRDKTSSKKAVLEKARRLKKLAADYGIPFIVNDHIDVALA 76
Query: 157 VNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC- 215
V+ASGV + LP R + ++G + L+ A A + GAD++
Sbjct: 77 VDASGVHVGQDDLPLPEVRKLLGPD-------KIIGVSTHKLEEALEAEKN-GADYIGVG 128
Query: 216 -CFGEGQKADVIE-------NSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDL 267
F KADV++ + +V IP + +V + +++GA + E +
Sbjct: 129 PIFPTNSKADVVDPVTTAYIREVKEHVTIPFVAIGGIKRHNVREVIEAGAEAICVITEIV 188
Query: 268 SLFNDGVLSQMFCA 281
+ + SQ A
Sbjct: 189 AARDVKAASQALLA 202
|
Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Bacillus clausii (strain KSM-K16) (taxid: 66692) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q746Q3|MNME_GEOSL tRNA modification GTPase MnmE OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=mnmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 23/164 (14%)
Query: 341 IKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTTN 399
++KA+ + E+ D + E ++I G+ N GKSS++N LL KR + V TT
Sbjct: 197 VRKAAETVGELIAGFDEGRVLREGVAVLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTTR 256
Query: 400 EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF 459
+I EE I LP ++ I DT +++ + RLT E
Sbjct: 257 DII---------EEVVN---------IRGLPLRMIDTAGIRDTE--DIVEKEGVRLTLEK 296
Query: 460 VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
+P ADLVL VI RPL E + + L + K+++ V NK DL
Sbjct: 297 IPEADLVLLVIDGSRPLDEDDRMIL--SALAGKRLILVENKCDL 338
|
Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 3 EC: . EC: 6 EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 921 | ||||||
| 225436930 | 926 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.954 | 0.666 | 0.0 | |
| 255559458 | 921 | conserved hypothetical protein [Ricinus | 0.964 | 0.964 | 0.661 | 0.0 | |
| 449444923 | 924 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.980 | 0.634 | 0.0 | |
| 449521128 | 924 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.982 | 0.979 | 0.631 | 0.0 | |
| 356502809 | 914 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.982 | 0.617 | 0.0 | |
| 297843118 | 923 | hypothetical protein ARALYDRAFT_470295 [ | 0.982 | 0.980 | 0.600 | 0.0 | |
| 356536771 | 915 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.984 | 0.615 | 0.0 | |
| 357440747 | 914 | GTP-binding protein engA [Medicago trunc | 0.957 | 0.964 | 0.615 | 0.0 | |
| 145335021 | 912 | FZO-like protein [Arabidopsis thaliana] | 0.969 | 0.979 | 0.593 | 0.0 | |
| 242087813 | 922 | hypothetical protein SORBIDRAFT_09g01929 | 0.923 | 0.922 | 0.533 | 0.0 |
| >gi|225436930|ref|XP_002275196.1| PREDICTED: uncharacterized protein LOC100256371 [Vitis vinifera] gi|296086702|emb|CBI32337.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1214 bits (3142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/903 (66%), Positives = 737/903 (81%), Gaps = 19/903 (2%)
Query: 25 FPIPRFKPPPHRTHFPIKSISNDNSFRSEDSAAAPVISEKQQRPRTLYPGGYKRPEIKVP 84
+P+P F R+ I SI+N+ + P S+ +Q PRT+YPGGYKRPEI+VP
Sbjct: 37 YPLPLFSR--RRSRLSIVSIANN---------SIPPTSQNKQ-PRTVYPGGYKRPEIRVP 84
Query: 85 NVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL 144
++VLQL +VL LD++DEAV+K+VG+VVL+GG+ SG +YEAACLLKSVV++RA
Sbjct: 85 SLVLQLSVDEVLDRAGVLDVVDEAVSKWVGVVVLDGGDGSGGRLYEAACLLKSVVRERAY 144
Query: 145 FLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNA 204
++AERVDIAAAVNA+GV+LSD+GLPAIVARNTM DS SESV+LPLV RNVQT +AAF A
Sbjct: 145 LMVAERVDIAAAVNANGVVLSDKGLPAIVARNTMMDSRSESVILPLVARNVQTANAAFTA 204
Query: 205 SSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFIMNAS-----PLVDVSKFLKSGASG 259
S+SEGADFL+ E ++++V+ S+F NVKIPIF + S L + S+ LK+GASG
Sbjct: 205 SNSEGADFLLYGAVEEKQSEVLATSVFENVKIPIFAVVPSRAKDTSLFEASELLKAGASG 264
Query: 260 FVISLEDLSLFNDGVLSQMFCANGTTNEKT-DRGEDVSNVKLLDTSNSFFGKERVAGFVK 318
V SLEDL LF+D VL ++F N++T D ++++ +K LD ++ GK RVAGF+K
Sbjct: 265 LVFSLEDLRLFSDDVLRKLFETVHAMNKRTEDELQNLNKLKSLDVNSGVPGKRRVAGFIK 324
Query: 319 FEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKS 378
EDREK++IETER VLLEAI++I+KA+PLMEEVSLLIDAVSQ+DEPFLL IVGE+NSGKS
Sbjct: 325 LEDREKEVIETERLVLLEAINIIQKAAPLMEEVSLLIDAVSQLDEPFLLAIVGEFNSGKS 384
Query: 379 SVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438
+VINALLG+RYLK+GVVPTTNEITFLR+S+L S+ +QRCERHPDGQYICYLP+PILKEM
Sbjct: 385 TVINALLGRRYLKEGVVPTTNEITFLRYSELDSDGKQRCERHPDGQYICYLPAPILKEMN 444
Query: 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVL 498
IVDTPGTNVILQRQQRLTEEFVPRADL+LFVISADRPLTESEV FLRYTQQW+KK+VFVL
Sbjct: 445 IVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTESEVAFLRYTQQWRKKIVFVL 504
Query: 499 NKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSEL 558
NK+DLYQNA ELEEA+SF+K+N KLLN+++V +YPVSAR LEAKLS +S +GKD+
Sbjct: 505 NKADLYQNASELEEAVSFIKKNVQKLLNVKHVILYPVSARLALEAKLS-ASGIGKDYEPS 563
Query: 559 SVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDC 618
+ SHW+ +F + E LYSFLDGS+STG ERMRLKLETPI IAERL SSCETLV +D
Sbjct: 564 VADSSHWKATSFSEFENFLYSFLDGSTSTGMERMRLKLETPIGIAERLFSSCETLVRQDY 623
Query: 619 QDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTLSLIDSTKSRVVKLIESTLQISNLD 678
Q AKQDL NEM+ S+KEY +KMESE+ISWRR+TLSLID+TK+R+VKLI+STLQ+SNLD
Sbjct: 624 QYAKQDLASINEMVSSVKEYAVKMESENISWRRQTLSLIDTTKARIVKLIDSTLQLSNLD 683
Query: 679 IVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLGEYTMWLQSKNAREGRRYKESFE 738
+V SYV +G KSA +P+TS +Q+DIIGPA D +KLLGEY WLQS NA EGR YKESFE
Sbjct: 684 LVGSYVLKGAKSATLPATSSVQNDIIGPAHADARKLLGEYVTWLQSNNAHEGRLYKESFE 743
Query: 739 NRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIEDFSASSTSKMFEQEIREVFLGTFGGLG 798
+WP VY QV + YEL+RK D S + +E+FSA + S++F+QEIREVFLG FGGLG
Sbjct: 744 RKWPLFVYPHNQVGLETYELLRKGDELSLKALENFSAGAASRLFDQEIREVFLGVFGGLG 803
Query: 799 AAGLSASLLTSVLPTTLEDLLALGLCSAGGYIAVANFPARRQRVIEKVNKIADGLAREIE 858
AAG SASLLTSVLPTTLEDLLALGLCSAGG++A++NFPARR+ +IEKV + AD ARE+E
Sbjct: 804 AAGFSASLLTSVLPTTLEDLLALGLCSAGGWLAISNFPARRKGMIEKVTRAADAFARELE 863
Query: 859 EAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQNL 918
AMQKDL ETV +LENFV + KPYQD AQ +LD+L EIQDELSNV++K+QTLQ++IQNL
Sbjct: 864 VAMQKDLLETVENLENFVKLIAKPYQDEAQNRLDKLLEIQDELSNVEKKLQTLQIQIQNL 923
Query: 919 HVS 921
HVS
Sbjct: 924 HVS 926
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559458|ref|XP_002520749.1| conserved hypothetical protein [Ricinus communis] gi|223540134|gb|EEF41711.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1194 bits (3088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/898 (66%), Positives = 727/898 (80%), Gaps = 10/898 (1%)
Query: 31 KPPPHRTH-FPIKSISNDNSFRSEDSAAAPVISEKQQRPRTLYPGGYKRPEIKVPNVVLQ 89
K P RTH FPI S+ N N F + + P + QQ PRTL+PGGYKRPEIKVP++VLQ
Sbjct: 27 KSSPLRTHRFPILSLPN-NPFHQSINQSLPT-QQSQQSPRTLFPGGYKRPEIKVPSIVLQ 84
Query: 90 LEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAE 149
L P VL G ALD +D+A++K+VGIVVLNG + +GK++YEAACLLKSVVKDR FLI E
Sbjct: 85 LYPDDVLRDG-ALDFLDKALSKWVGIVVLNGADVTGKTLYEAACLLKSVVKDRVYFLIGE 143
Query: 150 RVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEG 209
RVDIAAAVNASGV+LSDQGLP+IVARN M+DS SES++LPLVGRNVQ+ AA +AS+SEG
Sbjct: 144 RVDIAAAVNASGVVLSDQGLPSIVARNMMRDSKSESILLPLVGRNVQSPTAALDASNSEG 203
Query: 210 ADFLVCCFGEGQKADVIENSLFTNVKIPIFIMNAS-----PLVDVSKFLKSGASGFVISL 264
ADFL+ + + D+ S F +VKIPIFI++ S +++ S+ LKSGA G V+SL
Sbjct: 204 ADFLIYSPEQEEHFDLKIYSGFADVKIPIFIIHGSRRPAMSVMEASELLKSGAGGLVMSL 263
Query: 265 EDLSLFNDGVLSQMFCANGTTNEKTDRG-EDVSNVKLLDTSNSFFGKERVAGFVKFEDRE 323
EDL LF+D LSQ+F K++ G E + K LD N GK+RVAGFV EDRE
Sbjct: 264 EDLRLFSDEFLSQVFYTLSAMENKSENGLESFNKHKSLDIGNDVHGKKRVAGFVNVEDRE 323
Query: 324 KQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINA 383
KQLIETERSVLL+AI+VI+KA+P MEEVSLLIDAVSQIDEPFLL IVGE+NSGKS+VINA
Sbjct: 324 KQLIETERSVLLQAINVIQKAAPQMEEVSLLIDAVSQIDEPFLLAIVGEFNSGKSTVINA 383
Query: 384 LLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443
LLG+RYLK+GVVPTTNEITFLR+S SEE QRCERHPDGQY+CYLP+PIL EM IVDTP
Sbjct: 384 LLGERYLKEGVVPTTNEITFLRYSQYNSEEPQRCERHPDGQYVCYLPAPILNEMNIVDTP 443
Query: 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503
GTNVILQRQQRLTEEFVPRADL+LFVISADRPLTESEV FLRYTQQWKKKVVFVLNKSDL
Sbjct: 444 GTNVILQRQQRLTEEFVPRADLLLFVISADRPLTESEVAFLRYTQQWKKKVVFVLNKSDL 503
Query: 504 YQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDS 563
YQNA ELEEA SF+KENT KLLN E+V +YPVSARS LEAKLS SS +D++E ++S
Sbjct: 504 YQNASELEEAKSFIKENTRKLLNTESVILYPVSARSALEAKLSASSDSERDYTESLNSES 563
Query: 564 HWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQ 623
HW+ ++FD+ EK LYSFLDGS+ TG ERM+LKLETPI IA ++SSCE V ++ Q A+Q
Sbjct: 564 HWKTSSFDEFEKFLYSFLDGSTETGMERMKLKLETPIAIANCIISSCEAFVKQETQYAEQ 623
Query: 624 DLTLANEMIDSLKEYVMKMESESISWRRKTLSLIDSTKSRVVKLIESTLQISNLDIVASY 683
DL ++++DS+K+Y +KME +SISWR+K LS I++TKSRV++LIESTLQISNLD+ SY
Sbjct: 624 DLATVSDIVDSVKDYTLKMEKDSISWRKKALSKIETTKSRVLELIESTLQISNLDLATSY 683
Query: 684 VFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLGEYTMWLQSKNAREGRRYKESFENRWPS 743
+ +GEKS P++ R+QHDIIGPA+ D QKLL EY +WL+S +A E + YKE+FE RWPS
Sbjct: 684 LLKGEKSTMTPTSLRVQHDIIGPAVSDVQKLLEEYALWLKSNSAHESKLYKEAFEKRWPS 743
Query: 744 LVYLQPQVYPDMYELVRKVDGYSSRVIEDFSASSTSKMFEQEIREVFLGTFGGLGAAGLS 803
++ +++ + YEL+ K D + I++FS ++ SK+FEQEIREV+LGTFGGLGAAGLS
Sbjct: 744 IINPDSRMHSETYELLEKADDLGLKAIQNFSTAAASKLFEQEIREVYLGTFGGLGAAGLS 803
Query: 804 ASLLTSVLPTTLEDLLALGLCSAGGYIAVANFPARRQRVIEKVNKIADGLAREIEEAMQK 863
ASLLTSVLPTTLEDLLALGLCSAGG+IA+++FP R+Q +++KV +IADGL RE+EEAMQK
Sbjct: 804 ASLLTSVLPTTLEDLLALGLCSAGGFIAISSFPYRKQEMVDKVRRIADGLMREVEEAMQK 863
Query: 864 DLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQNLHVS 921
DL ET+ +L+NF+ + KPYQDAAQ +LD L IQ+ELS ++EKI+TLQVEIQNLH+S
Sbjct: 864 DLLETLVNLDNFLKIISKPYQDAAQQRLDDLLNIQNELSEMEEKIRTLQVEIQNLHLS 921
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444923|ref|XP_004140223.1| PREDICTED: uncharacterized protein LOC101213431 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/926 (63%), Positives = 724/926 (78%), Gaps = 20/926 (2%)
Query: 7 LHHAPT-RV-PAPRFL-SDPYFPI--PRFKPPPHRTH-FPIKSISNDNSFRSEDSAAAPV 60
LHH R+ +P FL S P+F + P K P R H F I S+S +N F+S S + P
Sbjct: 6 LHHNSVFRIHSSPLFLKSTPFFQMHPPLLKTSPRRPHRFSINSVS-ENPFQS--SQSIPK 62
Query: 61 ISEKQQRPRTLYPGGYKRPEIKVPNVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG 120
EK Q PRTL+P G+KRPEIKVP VVLQL+ +VLAG DALDL+D AV+K+VGIVVLN
Sbjct: 63 TPEKPQ-PRTLFPSGFKRPEIKVPCVVLQLDAAEVLAGDDALDLVDRAVSKWVGIVVLNS 121
Query: 121 GEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKD 180
GE G +YEAAC LKS+V DRA LIAERVDIA AV ASGV+LSDQGLP IVARNTM D
Sbjct: 122 GEGGGGKLYEAACKLKSLVGDRAYLLIAERVDIATAVGASGVVLSDQGLPPIVARNTMLD 181
Query: 181 SMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFI 240
S S+S+ LPLV RNV++ +A NAS SEGADFL+ F E +K D+ +S+F NVKIPIFI
Sbjct: 182 STSDSLFLPLVARNVKSSISAVNASKSEGADFLLYDFDE-EKLDMTTDSVFKNVKIPIFI 240
Query: 241 MNASPLVDVS-----KFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTN-EKTDRGED 294
+ +S +V+ K+L+ GASG VISL+ L L ++ + ++F + T N K D E
Sbjct: 241 LFSSYGANVTFHEALKWLEFGASGLVISLQALRLLSNDDVGKLFDSIFTENGRKEDDIES 300
Query: 295 VSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLL 354
++ L + N G +VAGF EDREKQ+IETE+ VL EAI+VI+KA+PLMEEVSLL
Sbjct: 301 SNSSSLFNMGNGALGTTQVAGFANLEDREKQVIETEKLVLREAINVIQKAAPLMEEVSLL 360
Query: 355 IDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQ 414
D+VSQIDEPF+L IVGE+NSGKS+VINALLG+RYLKDGVVPTTNEITFL+FS+L S EQ
Sbjct: 361 NDSVSQIDEPFMLAIVGEFNSGKSTVINALLGRRYLKDGVVPTTNEITFLKFSELNSSEQ 420
Query: 415 QRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADR 474
QRCERHPDGQYICYLP+PIL EM IVDTPGTNVIL+RQQRLTEEFVPRADL+LFVISADR
Sbjct: 421 QRCERHPDGQYICYLPAPILNEMNIVDTPGTNVILERQQRLTEEFVPRADLLLFVISADR 480
Query: 475 PLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534
PLTESEV FLRYT QWKKKVVFVLNKSDLYQN+ ELEEA+SFVKEN KLLN E+V ++P
Sbjct: 481 PLTESEVNFLRYTLQWKKKVVFVLNKSDLYQNSDELEEALSFVKENAAKLLNTEHVFVFP 540
Query: 535 VSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRL 594
VSAR L+ KLS + G+ LS + S+WR ++F +LE LYSFLDGS+S GKERM+L
Sbjct: 541 VSARYALDEKLSATLESGE---VLSPSSSYWRSSSFHELENFLYSFLDGSTSNGKERMKL 597
Query: 595 KLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTL 654
KL+TP+ IAERLLS+ ETLV ++ + AKQDL NE++D ++ Y +KME+ESI WRR+ L
Sbjct: 598 KLQTPVSIAERLLSAAETLVRQEIRFAKQDLASLNELVDGVRNYGLKMENESIIWRRQAL 657
Query: 655 SLIDSTKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKL 714
SLIDST+SR++KL+ESTLQ+SNLDI A YV +GEK+ + +TS+IQ+DII PAL D QKL
Sbjct: 658 SLIDSTQSRIMKLVESTLQLSNLDIAAYYVLKGEKTTTLSATSKIQNDIISPALADAQKL 717
Query: 715 LGEYTMWLQSKNAREGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIEDFS 774
L +Y WLQS NA EG Y+ES + WPS+V+ Q++ + YEL++KVD S +VI++FS
Sbjct: 718 LQDYESWLQSGNANEGTVYQESLQKLWPSIVFPATQMHFETYELLKKVDDLSLKVIKNFS 777
Query: 775 ASSTSKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYIAVAN 834
S+ SK+F+QEIRE FLGTFGGLGAAGLSASLLT+VLPTT+EDLLALGLCSAGG++A++N
Sbjct: 778 PSAASKLFDQEIREAFLGTFGGLGAAGLSASLLTTVLPTTIEDLLALGLCSAGGFLAISN 837
Query: 835 FPARRQRVIEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDRL 894
FP+RRQ+++ KV + ADG ARE+E AMQ+DL E V +LE FV+ + KPY+D Q +LD+L
Sbjct: 838 FPSRRQQLVSKVKRTADGFARELEAAMQEDLNEAVRNLETFVSVISKPYRDDTQDRLDKL 897
Query: 895 SEIQDELSNVQEKIQTLQVEIQNLHV 920
EIQDEL NV +K+Q LQ EIQNLHV
Sbjct: 898 LEIQDELCNVGKKLQKLQNEIQNLHV 923
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521128|ref|XP_004167583.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101213431 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/927 (63%), Positives = 724/927 (78%), Gaps = 22/927 (2%)
Query: 7 LHHAPT-RV-PAPRFL-SDPYFPI--PRFKPPPHRTH-FPIKSISNDNSFRSEDSAAAPV 60
LHH R+ +P FL S P+F + P K P R H F I S+S +N F+S S + P
Sbjct: 6 LHHNSVFRIHSSPLFLKSTPFFQMHPPLLKTSPRRPHRFSINSVS-ENPFQS--SQSIPK 62
Query: 61 ISEKQQRPRTLYPGGYKRPEIKVPNVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG 120
EK Q PRTL+P G+KRPEIKVP VVLQL+ +VLAG DALDL+D AV+K+VGIVVLN
Sbjct: 63 TPEKPQ-PRTLFPSGFKRPEIKVPCVVLQLDAAEVLAGDDALDLVDRAVSKWVGIVVLNS 121
Query: 121 GEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKD 180
GE G +YEAAC LKS+V DRA LIAERVDIA AV ASGV+LSDQGLP IVARNTM D
Sbjct: 122 GEGGGGKLYEAACKLKSLVGDRAYLLIAERVDIATAVGASGVVLSDQGLPPIVARNTMLD 181
Query: 181 SMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFI 240
S S+S+ LPLV RNV++ +A NAS SEGADFL+ F E +K D+ +S+F NVKIPIFI
Sbjct: 182 STSDSLFLPLVARNVKSSISAVNASKSEGADFLLYDFDE-EKLDMTTDSVFKNVKIPIFI 240
Query: 241 MNASPLVDVS-----KFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTN-EKTDRGED 294
+ +S +V+ K+L+ GASG VISL+ L L ++ + ++F + T N K D E
Sbjct: 241 LFSSYGANVTFHEALKWLEFGASGLVISLQALRLLSNDDVGKLFDSIFTENGRKEDDIES 300
Query: 295 VSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLL 354
++ L + N G +VAGF EDREKQ+IETE+ VL EAI+VI+KA+PLMEEVSLL
Sbjct: 301 SNSSSLFNMGNGALGTTQVAGFANLEDREKQVIETEKLVLREAINVIQKAAPLMEEVSLL 360
Query: 355 IDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQ 414
D+VSQIDEPF+L IVGE+NSGKS+VINALLG+RYLKDGVVPTTNEITFL+FS+L S EQ
Sbjct: 361 NDSVSQIDEPFMLAIVGEFNSGKSTVINALLGRRYLKDGVVPTTNEITFLKFSELNSNEQ 420
Query: 415 QRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADR 474
QRCERHPDGQYICYLP+PIL EM IVDTPGTNVIL+RQQRLTEEFVPRADL+LFVISADR
Sbjct: 421 QRCERHPDGQYICYLPAPILNEMNIVDTPGTNVILERQQRLTEEFVPRADLLLFVISADR 480
Query: 475 PLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534
PLTESEV FLRYTQQWKKKVVFVLNKSDLYQN+ ELEEA+SF+KEN KLLN E+V ++P
Sbjct: 481 PLTESEVNFLRYTQQWKKKVVFVLNKSDLYQNSDELEEALSFIKENAAKLLNTEHVFVFP 540
Query: 535 VSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRL 594
VSARS L+ KLS + G+ LS + S+WR ++F +LE LYSFLDGS+S GKERM+L
Sbjct: 541 VSARSALDEKLSATLESGE---VLSPSSSYWRSSSFHELENFLYSFLDGSTSNGKERMKL 597
Query: 595 KLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTL 654
KL+TP+ IAERLLS+ ETLV ++ + AKQDL NE++D ++ Y +KME+ESI WRR+ L
Sbjct: 598 KLQTPVSIAERLLSAAETLVRQEIRFAKQDLASLNELVDGVRNYGLKMENESIIWRRQAL 657
Query: 655 SLIDS-TKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQK 713
SL+ T+SR++KL+ESTLQ+SNLDI A YV +GE++ + +TS+IQ+DII PAL D QK
Sbjct: 658 SLVYRFTQSRIMKLVESTLQLSNLDIAAYYVLKGERT-TLSATSKIQNDIISPALADAQK 716
Query: 714 LLGEYTMWLQSKNAREGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIEDF 773
LL +Y WLQS NA EG Y+ES + WPS+V+ Q++ + YEL++KVD S +VI++F
Sbjct: 717 LLQDYESWLQSGNANEGTVYQESLQKLWPSIVFPATQMHFETYELLKKVDDLSLKVIKNF 776
Query: 774 SASSTSKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYIAVA 833
S S+ SK+F+QEIRE FLGTFGGLGAAGLSASLLT+VLPTT+EDLLALGLCSAGG++A++
Sbjct: 777 SPSAASKLFDQEIREAFLGTFGGLGAAGLSASLLTTVLPTTIEDLLALGLCSAGGFLAIS 836
Query: 834 NFPARRQRVIEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDR 893
NFP+RRQ+++ KV + ADG ARE+E AMQ+DL E V +LE FV+ + KPY+D Q +LD+
Sbjct: 837 NFPSRRQQLVSKVKRTADGFARELEAAMQEDLNEAVRNLETFVSVISKPYRDDTQDRLDK 896
Query: 894 LSEIQDELSNVQEKIQTLQVEIQNLHV 920
L EIQDEL NV +K+Q LQ EIQNLHV
Sbjct: 897 LLEIQDELCNVGKKLQKLQNEIQNLHV 923
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502809|ref|XP_003520208.1| PREDICTED: uncharacterized protein LOC100785233 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/925 (61%), Positives = 707/925 (76%), Gaps = 27/925 (2%)
Query: 11 PTRVPAPRFLSDPYFPI-PRFK--------PPPHRTHFPIKSISNDNSFRSEDSAAAPVI 61
P V +P S P+ I PR P FPI S+SN +S + P
Sbjct: 3 PCSVTSP---SSPFTAIIPRHTFFSRSSSLPLRRARAFPINSLSNGSSSQFNQQLFRP-- 57
Query: 62 SEKQQRPRTLYPGGYKRPEIKVPNVVLQLEPHQVL-AGGDALDLIDEAVAKFVGIVVLNG 120
+PRTL+PGGYKRPE+KVP +VLQL+P +VL A DAL LID AV+K+VGIVVL
Sbjct: 58 -RDPPQPRTLFPGGYKRPELKVPTLVLQLDPAEVLSADTDALALIDRAVSKWVGIVVLAS 116
Query: 121 GEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKD 180
EASG +YEAAC LKS+++DRA L+AERVDIAAA ASGVLLSDQGLP +VARNTM D
Sbjct: 117 NEASGGKLYEAACSLKSLIQDRAYLLVAERVDIAAATAASGVLLSDQGLPTVVARNTMLD 176
Query: 181 SMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFI 240
S SE VVLPLV R VQT+DAA NAS SEGADFL+ G+ + SL+ +VKIPIF+
Sbjct: 177 SKSELVVLPLVARIVQTVDAAVNASKSEGADFLIYGGGDLNRVGQEVGSLYESVKIPIFV 236
Query: 241 ---MNASPLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTNEKTDRGEDVSN 297
N D S L SGASGFV SL + LF D L ++F GT D G N
Sbjct: 237 SCVKNNMSYADASGLLASGASGFVTSLANFGLFGDEFLHKLF---GTVYASDDGGRMSEN 293
Query: 298 VKLLDTSNSFFGK-ERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLID 356
L+ N F + E VAGFVK EDREK LIETER VL EAI+VIK+A+PLMEEVSLL D
Sbjct: 294 K--LNVDNGFQSETEVVAGFVKLEDREKLLIETERLVLNEAIEVIKRAAPLMEEVSLLND 351
Query: 357 AVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQR 416
AVSQIDEPFLLVIVGE+NSGKS+VINALLG+RYLK+GVVPTTNEITFLR++DL E+QQ
Sbjct: 352 AVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKEGVVPTTNEITFLRYTDLDIEQQQ- 410
Query: 417 CERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL 476
CERHPDGQYICY+P+PILKEM IVDTPGTNVILQRQQRLTEEFVPRADL+LFVISADRPL
Sbjct: 411 CERHPDGQYICYIPAPILKEMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPL 470
Query: 477 TESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVS 536
T SE+ FLRY+QQWKKK VFVLNK+D+YQN ELEEA+SF+K+N +LLN E+V +YPVS
Sbjct: 471 TGSEIAFLRYSQQWKKKAVFVLNKADIYQNNHELEEAMSFIKDNIQRLLNTEDVILYPVS 530
Query: 537 ARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKL 596
ARS LEAKL ++ VG+ + ELS +DSH+ +F +LE LYSFLDGS+ G +RMRLKL
Sbjct: 531 ARSALEAKLMATTNVGRLNEELSTSDSHYGAISFFELENFLYSFLDGSTIPGMDRMRLKL 590
Query: 597 ETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTLSL 656
ETP+ IA+RL+S+CETLV +D + AKQDL ++++++ ++ + M +ES+SWRR+TLSL
Sbjct: 591 ETPVAIADRLISACETLVTQDYRYAKQDLAAVEDIVNNVNDFALNMVTESLSWRRQTLSL 650
Query: 657 IDSTKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLG 716
I++TKSRV++L+E+ LQ+SN DI+ASY F+GEK+ MP+TSRIQ+DIIGPA+ QK+L
Sbjct: 651 IETTKSRVIELVEANLQLSNFDIIASYAFKGEKN-VMPTTSRIQNDIIGPAVSAVQKILE 709
Query: 717 EYTMWLQSKNAREGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIEDFSAS 776
EY WL SK ++GR YKESFE RWPSL + Q+ + +L++KVD S+VI++FS++
Sbjct: 710 EYGNWLYSKYTQQGRLYKESFEKRWPSLSHESSQINFETDQLLKKVDQAGSQVIDNFSSN 769
Query: 777 STSKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYIAVANFP 836
+ SK FEQE+RE+ LGTFG LG AGLSASLLTSVL TTL+DLLALG+CSAGGY+A++ FP
Sbjct: 770 AVSKSFEQEVREMILGTFGQLGVAGLSASLLTSVLQTTLDDLLALGICSAGGYLAISTFP 829
Query: 837 ARRQRVIEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSE 896
ARRQ+VI+KV + AD LA E+EEAM+KDL E + +L+ FV + KPYQD AQ +L+RL E
Sbjct: 830 ARRQKVIDKVKRKADTLAYELEEAMKKDLTEAIENLDTFVKVLSKPYQDEAQNRLNRLVE 889
Query: 897 IQDELSNVQEKIQTLQVEIQNLHVS 921
IQ+ELSNV++K++TLQ++IQNL+VS
Sbjct: 890 IQEELSNVEKKLRTLQIDIQNLNVS 914
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843118|ref|XP_002889440.1| hypothetical protein ARALYDRAFT_470295 [Arabidopsis lyrata subsp. lyrata] gi|297335282|gb|EFH65699.1| hypothetical protein ARALYDRAFT_470295 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/933 (60%), Positives = 717/933 (76%), Gaps = 28/933 (3%)
Query: 1 MKPLLSLHHAPTRVPAPRFLS--DPYFP-----IPRFKPPPHRTHFPIKSISNDNSFRSE 53
M+ L+S V +P +S P FP + F P HR P SI N S S
Sbjct: 1 MRTLISHRQC---VTSPFLISAASPPFPGRCFQLSSFTAPRHR-RLPSLSIRN-VSHESA 55
Query: 54 DSAAAPVISEKQQRPRTLYPGGYKRPEIKVPNVVLQLEPHQVLAGG--DALDLIDEAVAK 111
D ++ RPRTLYPGGYKRPE+ VP V+L+L+ +V++G + +DL+D A+AK
Sbjct: 56 DQTSS-------SRPRTLYPGGYKRPELAVPGVLLRLDADEVMSGNREETVDLVDRALAK 108
Query: 112 FVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPA 171
V IVV++GG +GK +YEAACLLKS+VK RA LIAERVDIA+AV ASGV LSD+GLPA
Sbjct: 109 SVQIVVIDGGATAGK-LYEAACLLKSLVKGRAYLLIAERVDIASAVGASGVALSDEGLPA 167
Query: 172 IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLF 231
IVARNT+ S +SVVLPLV R V+ +D+A +ASSSEGADFL+ GE ++ ++ +SL
Sbjct: 168 IVARNTLMGSNPDSVVLPLVARIVKDVDSALSASSSEGADFLILGSGEDKQVGLLSDSLL 227
Query: 232 TNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANGT---TNEK 288
+VKIPIF+ +S ++ + LKSGASGFVISL+DL D L Q C +G +E
Sbjct: 228 KSVKIPIFVTCSSKREEL-QLLKSGASGFVISLKDLRSSRDVALRQ--CLDGAYVVNHET 284
Query: 289 TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLM 348
++ E + N K L ++ K AGF+K ED++K +IE E+SVL E I++I+KA+PLM
Sbjct: 285 QNKNESILNDKTLVETSDLPEKNNSAGFIKLEDKQKLIIEMEKSVLGETIEIIQKAAPLM 344
Query: 349 EEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSD 408
EEVSLLIDAVS+IDEPFL+VIVGE+NSGKS+VINALLGKRYLK+GVVPTTNEITFL +SD
Sbjct: 345 EEVSLLIDAVSRIDEPFLMVIVGEFNSGKSTVINALLGKRYLKEGVVPTTNEITFLCYSD 404
Query: 409 LASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLF 468
L SEEQQRC+ HPDGQY+CYLP+PILK++ IVDTPGTNVILQRQQRLTEEFVPRADL++F
Sbjct: 405 LESEEQQRCQTHPDGQYVCYLPAPILKDINIVDTPGTNVILQRQQRLTEEFVPRADLLVF 464
Query: 469 VISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIE 528
V+SADRPLTESEV FLRYTQQWKKK VF+LNKSD+Y++A ELEEAISFVKENT KLLN E
Sbjct: 465 VLSADRPLTESEVAFLRYTQQWKKKFVFILNKSDIYRDARELEEAISFVKENTRKLLNTE 524
Query: 529 NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTG 588
NV +YPVSARS LEAKLS +S VG+D E+S S+WR+ +F++LEK LYSFLD S++TG
Sbjct: 525 NVILYPVSARSALEAKLSTASLVGRDDLEVSDPGSNWRVQSFNELEKFLYSFLDSSTATG 584
Query: 589 KERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESIS 648
ER+RLKLETP+ IAERLL+S E+LV +DC A++DL A+++I+ KEY +KME ESIS
Sbjct: 585 MERIRLKLETPMAIAERLLASVESLVRQDCLAAREDLASADKIINRTKEYALKMEYESIS 644
Query: 649 WRRKTLSLIDSTKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPAL 708
WRR+ LSLID+ + +VV LI +TL++S+LD+ SY+F+GE SA++ +TS++Q +I+ PAL
Sbjct: 645 WRRQALSLIDNARLQVVDLIGTTLRLSSLDLAVSYLFKGENSASIAATSKVQGEILAPAL 704
Query: 709 LDTQKLLGEYTMWLQSKNAREGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSR 768
+ ++LLG+Y WLQS AREG +SFEN+WP+ V + Q+ D Y+L+RK D +S +
Sbjct: 705 TNAKELLGKYAEWLQSNTAREGSLSLKSFENKWPTYVNSKTQLGIDTYDLLRKTDKFSLK 764
Query: 769 VIEDFSASSTSKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGG 828
I++ SA +TSK EQ+IREVF+ T GGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGG
Sbjct: 765 TIQNLSAGTTSKRLEQDIREVFVVTVGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGG 824
Query: 829 YIAVANFPARRQRVIEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQ 888
Y+A+ANFP RRQ +I KVNK+AD LA+++E++M+KDL + +L NFV V KPY++ AQ
Sbjct: 825 YVAIANFPYRRQAIIGKVNKVADALAQQLEDSMRKDLSDATDNLVNFVNIVAKPYREEAQ 884
Query: 889 LKLDRLSEIQDELSNVQEKIQTLQVEIQNLHVS 921
L+LD L IQ ELS+++ K+Q LQV+I NLHVS
Sbjct: 885 LRLDHLLGIQKELSDIRSKLQLLQVDIDNLHVS 917
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536771|ref|XP_003536908.1| PREDICTED: uncharacterized protein LOC100808213 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1079 bits (2790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/923 (61%), Positives = 709/923 (76%), Gaps = 22/923 (2%)
Query: 11 PTRVPAPRFLSDPYFPI-PRF---KPP--PHRTH--FPIKSISNDNSFRSEDSAAAPVIS 62
P V +P S P+ I PR + P P R FPI S+SN+ ++ + S
Sbjct: 3 PCSVTSP---SSPFTAIIPRHTHSRSPSLPLRVARAFPINSLSNNAESSAQFNQQLFRPS 59
Query: 63 EKQQRPRTLYPGGYKRPEIKVPNVVLQLEPHQVL-AGGDALDLIDEAVAKFVGIVVLNGG 121
Q+PRTL+PGGYKRPE+ VP +VLQL+P + L A DAL LID+AV+K+VGIVVL
Sbjct: 60 YPPQQPRTLFPGGYKRPELNVPTLVLQLDPDEFLSADTDALALIDKAVSKWVGIVVLASN 119
Query: 122 EASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDS 181
+ASG +YEAAC LKS+++DRA L+AERVDIAAA ASGVLLSDQGLP +VARN M DS
Sbjct: 120 QASGGKLYEAACSLKSLLQDRAYLLVAERVDIAAAAAASGVLLSDQGLPTVVARNMMLDS 179
Query: 182 MSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFIM 241
SE VVLPLV R V+T+DAA NAS SEGADFL+ G+ + S++ +VKIPIF+
Sbjct: 180 KSELVVLPLVARIVRTVDAAVNASKSEGADFLIYGGGDLNRVGQEVGSVYESVKIPIFVS 239
Query: 242 NASPL--VDVSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTNEKTDRGEDVSNVK 299
+ D S SGASGFV SLE+ LF D L ++F GT +D G ++S K
Sbjct: 240 CGKNMSYTDASGLFASGASGFVTSLENFGLFGDEFLHKLF---GTVY-ASDDGGNMSENK 295
Query: 300 LLDTSNSFFGK-ERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAV 358
L + N F + E VAGFVK EDREK LIETER VL EAI+ IK+A+PLMEEVSLL DAV
Sbjct: 296 L-NVDNGFQSETEVVAGFVKLEDREKLLIETERLVLNEAIEAIKRAAPLMEEVSLLNDAV 354
Query: 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCE 418
SQIDEPFLLVIVGE+NSGKS+VINALLG+RYLK+GVVPTTNEITFLR++DL EQQRCE
Sbjct: 355 SQIDEPFLLVIVGEFNSGKSTVINALLGERYLKEGVVPTTNEITFLRYTDL-DIEQQRCE 413
Query: 419 RHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE 478
RHPDGQYICY+P+PILKEM IVDTPGTNVILQRQQRLTEEFVPRADL+LFVISADRPLT
Sbjct: 414 RHPDGQYICYIPAPILKEMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTG 473
Query: 479 SEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSAR 538
SE+ FLRY+QQWKKK VFVLNK+D+YQN ELEEA+SF+K+N +LLN E+V +YPVSAR
Sbjct: 474 SEIAFLRYSQQWKKKAVFVLNKADIYQNNHELEEAMSFIKDNIQRLLNTEDVMLYPVSAR 533
Query: 539 STLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLET 598
S LEAKL +S G+ + ELS + SH+ ++F +LE LYSFLDGS+ G +RMRLKLET
Sbjct: 534 SALEAKLMATSNAGRLNEELSTSYSHYGASSFSELENFLYSFLDGSTIPGMDRMRLKLET 593
Query: 599 PIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTLSLID 658
P+ IA+RL+S+CETLV +D + AKQDL ++++++ ++ + M +ES+SWRR TLSLI+
Sbjct: 594 PVAIADRLISACETLVTQDYRYAKQDLAAVEDIVNNVNDFALNMVTESLSWRRPTLSLIE 653
Query: 659 STKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLGEY 718
+TKSRVV+L+E+ LQ+SN DI+ASY F+GEK+ A+P+TSRIQ+DIIGPA+ QK+L EY
Sbjct: 654 TTKSRVVELVEANLQLSNFDIIASYAFKGEKN-ALPTTSRIQNDIIGPAVSAVQKILEEY 712
Query: 719 TMWLQSKNAREGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIEDFSASST 778
WL SK ++GR YKESFE RWPSL + Q+ +L++KVD S+VI++FS+ +
Sbjct: 713 ENWLYSKYTQQGRLYKESFEKRWPSLSHESSQINFGTDQLLKKVDQAGSQVIDNFSSIAV 772
Query: 779 SKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYIAVANFPAR 838
SK FEQE+RE+ LGTFG LG AGLSASLLTSVL TTLEDLLALG+CSAGGY+A++ FPAR
Sbjct: 773 SKSFEQEVREMILGTFGQLGVAGLSASLLTSVLQTTLEDLLALGICSAGGYLAISTFPAR 832
Query: 839 RQRVIEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQ 898
RQ+VI+KV A+ LA E+EEAM+KDL E + +L+ FV + KPYQD AQ +L+RL EIQ
Sbjct: 833 RQKVIDKVKTKAETLAYELEEAMKKDLTEAIENLDTFVKVLSKPYQDEAQNRLNRLVEIQ 892
Query: 899 DELSNVQEKIQTLQVEIQNLHVS 921
+ELSNV++K++TLQ++IQNLHVS
Sbjct: 893 EELSNVEKKLRTLQIDIQNLHVS 915
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440747|ref|XP_003590651.1| GTP-binding protein engA [Medicago truncatula] gi|355479699|gb|AES60902.1| GTP-binding protein engA [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/907 (61%), Positives = 698/907 (76%), Gaps = 25/907 (2%)
Query: 23 PYFPIPRFKPPPHRTHFPIKSISNDNSFRSEDSAAAPVISEKQQRPRTLYPGGYKRPEIK 82
P+ P R+ P R I+++N+ R ++ Q +PRTL+PGGYKRPE++
Sbjct: 25 PHTPFSRYPHLPFRRTLHSSPITSNNASRHFFPK-----TQAQAQPRTLFPGGYKRPELR 79
Query: 83 VPNVVLQLEPHQVLAGGD-ALDLIDEAVAKFVGIVVLNGG-EASGKSVYEAACLLKSVVK 140
VP ++LQL Q+L G+ ALDLID+AV+K VGIV+L E SG +YEAACLLKS+++
Sbjct: 80 VPTLILQLNSDQILTRGESALDLIDKAVSKSVGIVILTSDDEQSGGKLYEAACLLKSLIR 139
Query: 141 DRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDA 200
DRA L+AERVDIAAA SGVLLSDQGLP +VARNTM S SE VVLPLV R VQT+DA
Sbjct: 140 DRAYLLVAERVDIAAAAVTSGVLLSDQGLPTVVARNTMLGSNSELVVLPLVARFVQTVDA 199
Query: 201 AFNASSSEGADFLVCCFGEGQKADVIE--NSLFTNVKIPIF--IMNAS-PLVDVSKFLKS 255
A NAS SEGADFL+ G G + + ++ NVKIPIF M + + S L S
Sbjct: 200 AVNASKSEGADFLIYGGGGGDLELLNQEIGNVVDNVKIPIFASFMGKNLSYGEASSLLAS 259
Query: 256 GASGFVISLEDLSLFNDGVLSQMFCANGTTNEKTDRGEDVSNVKLLDTSNSFFG-KERVA 314
GASGFV SLE LF+D + ++ L++ SN E V
Sbjct: 260 GASGFVTSLESFGLFDDDFQRTLDDRRDKIDDDK----------LVNESNGLQSITEVVG 309
Query: 315 GFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYN 374
GFVK EDREK+LIE ERSVL EAI+VIKKA+PLMEEVSLL DAVSQIDEPFLLVIVGE+N
Sbjct: 310 GFVKLEDREKRLIEMERSVLNEAIEVIKKAAPLMEEVSLLDDAVSQIDEPFLLVIVGEFN 369
Query: 375 SGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL 434
SGKS+VINALLG+RYLKDGVVPTTNEITFLR++DL E+QRCER+PDGQYICYLP+PIL
Sbjct: 370 SGKSTVINALLGERYLKDGVVPTTNEITFLRYNDL-DIEKQRCERYPDGQYICYLPAPIL 428
Query: 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKV 494
+EM IVDTPGTNVILQRQQRLTEEFVPRADL+LFVISADRPLT SEV FLRY+QQWKKKV
Sbjct: 429 REMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTGSEVAFLRYSQQWKKKV 488
Query: 495 VFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKD 554
VFVLNK+D+YQN ELEEA+SF+K+N +LLN E+V +YPVSARS LEAKL +S+ GK
Sbjct: 489 VFVLNKADIYQNNHELEEAMSFIKDNVKRLLNTEDVVLYPVSARSALEAKLMATSSFGKL 548
Query: 555 HSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLV 614
+ ELSV+ S + N+F +LEK LYSFLDGS+ G +RMRLKLETP+ IA+RL+S+CETLV
Sbjct: 549 NEELSVSGSQYGPNSFYELEKFLYSFLDGSTIAGMDRMRLKLETPVGIADRLISACETLV 608
Query: 615 MKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTLSLIDSTKSRVVKLIESTLQI 674
+D + AKQDL N +++S+ ++ + ME+ES+SWR++TLS+I+STKSRVV+L+E+T+Q+
Sbjct: 609 TQDYRCAKQDLAAINNVVNSVNDFALNMENESLSWRKQTLSMIESTKSRVVELVEATMQL 668
Query: 675 SNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLGEYTMWLQSKNAREGRRYK 734
SNLDIVASYVF+GEK+AA P+TSRIQ+DII P++ QK+LG+Y WL +KN ++GR YK
Sbjct: 669 SNLDIVASYVFKGEKNAA-PATSRIQNDIIDPSVSSVQKILGDYENWLSAKNTQQGRLYK 727
Query: 735 ESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIEDFSASSTSKMFEQEIREVFLGTF 794
ESFE RW SL++ Q + YEL++K D +VIE+FS+S+ SK FEQE+RE LGTF
Sbjct: 728 ESFEKRWSSLIHENSQKNSETYELLKKGDQAGYQVIENFSSSAVSKSFEQEVRETILGTF 787
Query: 795 GGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYIAVANFPARRQRVIEKVNKIADGLA 854
G LG AG SASLLTSVL TTLEDLLALG+CS GGYIA++NFP+RR+RVI+KV + AD LA
Sbjct: 788 GQLGVAGFSASLLTSVLQTTLEDLLALGICSVGGYIAISNFPSRRRRVIDKVKRKADTLA 847
Query: 855 REIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVE 914
E+EEAM++DL E V +L+ FV +GKPYQD Q +L++L EIQ+E+SN+++K++TLQ++
Sbjct: 848 NELEEAMKRDLTEAVENLDTFVRVIGKPYQDQVQNRLNKLVEIQEEISNIEKKLRTLQID 907
Query: 915 IQNLHVS 921
IQNLHVS
Sbjct: 908 IQNLHVS 914
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145335021|ref|NP_171815.3| FZO-like protein [Arabidopsis thaliana] gi|92911702|gb|ABE96616.1| FZL [Arabidopsis thaliana] gi|332189416|gb|AEE27537.1| FZO-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/934 (59%), Positives = 704/934 (75%), Gaps = 41/934 (4%)
Query: 1 MKPLLSLHHAPTRVPAPRFLS--DPYFP-----IPRFKPPPHR--THFPIKSISNDNSFR 51
M+ L+S V +P +S P FP + F PP HR + I++IS++++ +
Sbjct: 1 MRTLISHRQC---VTSPFLISAASPPFPGRCFKLSSFTPPRHRRFSSLSIRNISHESADQ 57
Query: 52 SEDSAAAPVISEKQQRPRTLYPGGYKRPEIKVPNVVLQLEPHQVLAGG--DALDLIDEAV 109
+ S RPRTLYPGGYKRPE+ VP ++L+L+ +V++G + LDL+D A+
Sbjct: 58 TSSS-----------RPRTLYPGGYKRPELAVPGLLLRLDADEVMSGNREETLDLVDRAL 106
Query: 110 AKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGL 169
AK V IVV++GG +GK +YEAACLLKS+VK RA LIAERVDIA+AV ASGV LSD+GL
Sbjct: 107 AKSVQIVVIDGGATAGK-LYEAACLLKSLVKGRAYLLIAERVDIASAVGASGVALSDEGL 165
Query: 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENS 229
PAIVARNT+ S +SV+LPLV R V+ +D+A ASSSEGADFL+ G G++ + +S
Sbjct: 166 PAIVARNTLMGSNPDSVLLPLVARIVKDVDSALIASSSEGADFLI--LGSGEEDTQVADS 223
Query: 230 LFTNVKIPIFIM--NASPLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTNE 287
L +VKIPI++ + + LKSG SGFVISL+DL D L Q
Sbjct: 224 LLKSVKIPIYVTCRGNEEAKEELQLLKSGVSGFVISLKDLRSSRDVALRQSL-------- 275
Query: 288 KTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPL 347
G V N N K+ AGF+K ED++K ++E E+SVL E I++I KA+PL
Sbjct: 276 ---DGAYVVNNHETQNMNELPEKKNSAGFIKLEDKQKLIVEMEKSVLRETIEIIHKAAPL 332
Query: 348 MEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFS 407
MEEVSLLIDAVS+IDEPFL+VIVGE+NSGKS+VINALLGKRYLK+GVVPTTNEITFL +S
Sbjct: 333 MEEVSLLIDAVSRIDEPFLMVIVGEFNSGKSTVINALLGKRYLKEGVVPTTNEITFLCYS 392
Query: 408 DLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVL 467
DL SEEQQRC+ HPDGQY+CYLP+PILK++ IVDTPGTNVILQRQQRLTEEFVPRADL++
Sbjct: 393 DLESEEQQRCQTHPDGQYVCYLPAPILKDINIVDTPGTNVILQRQQRLTEEFVPRADLLV 452
Query: 468 FVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI 527
FV+SADRPLTESEV FLRYTQQWKKK VF+LNKSD+Y++A ELEEAISFVKENT KLLN
Sbjct: 453 FVLSADRPLTESEVAFLRYTQQWKKKFVFILNKSDIYRDARELEEAISFVKENTRKLLNT 512
Query: 528 ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSST 587
ENV +YPVSARS LEAKLS +S VG+D E++ S+WR+ +F++LEK LYSFLD S++T
Sbjct: 513 ENVILYPVSARSALEAKLSTASLVGRDDLEIADPGSNWRVQSFNELEKFLYSFLDSSTAT 572
Query: 588 GKERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESI 647
G ER+RLKLETP+ IAERLLSS E LV +DC A++DL A+++I KEY +KME ESI
Sbjct: 573 GMERIRLKLETPMAIAERLLSSVEALVRQDCLAAREDLASADKIISRTKEYALKMEYESI 632
Query: 648 SWRRKTLSLIDSTKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPA 707
SWRR+ LSLID+ + +VV LI +TL++S+LD+ SYVF+GEKSA++ +TS++Q +I+ PA
Sbjct: 633 SWRRQALSLIDNARLQVVDLIGTTLRLSSLDLAISYVFKGEKSASVAATSKVQGEILAPA 692
Query: 708 LLDTQKLLGEYTMWLQSKNAREGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSS 767
L + ++LLG+Y WLQS AREG +SFEN+WP+ V + Q+ D Y+L++K D S
Sbjct: 693 LTNAKELLGKYAEWLQSNTAREGSLSLKSFENKWPTYVNSKTQLGIDTYDLLQKTDKVSL 752
Query: 768 RVIEDFSASSTSKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAG 827
+ I++ SA +TSK EQ+IREVF T GGLGAAGLSASLLTSVLPTTLEDLLALGLCSAG
Sbjct: 753 KTIQNLSAGTTSKRLEQDIREVFFVTVGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAG 812
Query: 828 GYIAVANFPARRQRVIEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAA 887
GY+A+ANFP RRQ +I KVNK+AD LA+++E+AMQKDL + +L NFV V KPY++ A
Sbjct: 813 GYVAIANFPYRRQAIIGKVNKVADALAQQLEDAMQKDLSDATSNLVNFVNIVAKPYREEA 872
Query: 888 QLKLDRLSEIQDELSNVQEKIQTLQVEIQNLHVS 921
QL+LDRL IQ ELS+++ K+Q LQV+I NLHVS
Sbjct: 873 QLRLDRLLGIQKELSDIRSKLQLLQVDIDNLHVS 906
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242087813|ref|XP_002439739.1| hypothetical protein SORBIDRAFT_09g019290 [Sorghum bicolor] gi|241945024|gb|EES18169.1| hypothetical protein SORBIDRAFT_09g019290 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/870 (53%), Positives = 623/870 (71%), Gaps = 19/870 (2%)
Query: 65 QQRPRTLYPGGYKRPEIKVPNVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS 124
++ PRTL+PGG+KRPEI+VP +VL++ + L GD + AV++ VGIVVL GE
Sbjct: 59 KEPPRTLFPGGFKRPEIQVPALVLRVGAEEALRCGDE---VAAAVSRGVGIVVLEAGEEG 115
Query: 125 GKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSE 184
G YEAA L++ V DRA LIAERVD+A+AV ASGV+L+D G+PAIVAR+ M S ++
Sbjct: 116 GGRAYEAARALRATVGDRAYLLIAERVDVASAVGASGVVLADDGIPAIVARSMMMKSNAD 175
Query: 185 SVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFI---- 240
S+ LP+V R +Q+ ++A +ASSSEGADFL+ G G D++ + +VKIPIF
Sbjct: 176 SIYLPIVARRIQSANSAISASSSEGADFLIVNTGTGDFTDLMNGGVGQHVKIPIFFTLNH 235
Query: 241 MNASPLVD-VSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTNE-----KTDRG-- 292
++ D S+ L+SGASG V SL + L D ++ + F + E + G
Sbjct: 236 LSEGTYSDFTSRLLQSGASGVVTSLAGMQLLTDDLIKKYFSKVDSAEEVPRASYSSAGML 295
Query: 293 EDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVS 352
EDV+NV +L K +VAGF K +++ QLIE E+ +L EAI +I+KA+P+MEEV
Sbjct: 296 EDVNNVMVLTRDRE---KTKVAGFTKLDEKVMQLIEIEKPILNEAIAIIRKAAPMMEEVE 352
Query: 353 LLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE 412
LL+DA S++ EPFLLV VGE+NSGKS+ INALLG++YL++GVVPTTNEIT L +S++ SE
Sbjct: 353 LLVDAASRLSEPFLLVTVGEFNSGKSTFINALLGRQYLQEGVVPTTNEITLLSYSEVESE 412
Query: 413 EQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISA 472
+RCERHPDGQ++CYL PILKEM +VDTPGTNVILQRQQRLTEE+VPRADL+LFV+S+
Sbjct: 413 SFERCERHPDGQFMCYLSVPILKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSS 472
Query: 473 DRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTI 532
DRPLTESEV FL+Y QQWKKKVVFVLNK DLY+N+ ELEEA +FVKEN MKLLN E+VT+
Sbjct: 473 DRPLTESEVGFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFVKENAMKLLNAEDVTL 532
Query: 533 YPVSARSTLEAKLSVS-SAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKER 591
+PVS+RS LEAKLS S ++ GK E +D WR + F +LE L SFLD S+ GKER
Sbjct: 533 FPVSSRSALEAKLSYSKNSDGKHLREAMFSDPRWRSSNFCELEDYLLSFLDSSTENGKER 592
Query: 592 MRLKLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRR 651
+RLKLETPI IA+RLL+SC+ LV + + A +DLT +++ Y +K++S+S SW+
Sbjct: 593 VRLKLETPIGIADRLLTSCQRLVKLEYEKAVEDLTSIKDLVYGANNYAIKLKSDSNSWQN 652
Query: 652 KTLSLIDSTKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDT 711
+ SLI+ K R V L+ STLQ+SN+D++ +Y +G+ ++ +TS +Q+DI+ P L D
Sbjct: 653 QISSLIERAKGRAVTLMGSTLQLSNIDLIFTYTVKGKTGSSTRATSFVQNDILSPTLDDA 712
Query: 712 QKLLGEYTMWLQSKNAREGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIE 771
LLG+Y+ WL S N RE + Y E F RW +LV + + D LV + + + + ++
Sbjct: 713 VNLLGDYSTWLSSSNTREAKVYLECFSARWDALVGPEERALLDPNGLVNEGEKLTIKALD 772
Query: 772 DFSASSTSKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYIA 831
F+AS+ +K+FE+EIREV GTFGGLG AGLSASLLTSVL TTLEDLLAL LCSAGG+
Sbjct: 773 GFNASAAAKVFEEEIREVAFGTFGGLGIAGLSASLLTSVLSTTLEDLLALALCSAGGFFV 832
Query: 832 VANFPARRQRVIEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKL 891
+++FP RR+ I+KVNK AD L+R+++EA+QKD+ ++ L FV + KPYQ+A Q K+
Sbjct: 833 LSSFPGRRKLAIQKVNKAADELSRKVDEAIQKDISQSANDLIRFVEVISKPYQEACQRKI 892
Query: 892 DRLSEIQDELSNVQEKIQTLQVEIQNLHVS 921
D L +Q ELS V+ K+QTL+VEIQNLH S
Sbjct: 893 DWLQGVQGELSAVERKLQTLKVEIQNLHGS 922
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 921 | ||||||
| TAIR|locus:2007579 | 912 | FZL "FZO-like" [Arabidopsis th | 0.913 | 0.922 | 0.603 | 9.3e-265 | |
| DICTYBASE|DDB_G0287331 | 711 | DDB_G0287331 "dynamin domain-c | 0.288 | 0.374 | 0.379 | 1.3e-44 | |
| UNIPROTKB|Q3AAB0 | 599 | CHY_2105 "Putative uncharacter | 0.257 | 0.395 | 0.258 | 5e-19 | |
| TIGR_CMR|CHY_2105 | 599 | CHY_2105 "conserved hypothetic | 0.257 | 0.395 | 0.258 | 5e-19 | |
| UNIPROTKB|Q609N9 | 614 | MCA1193 "Putative uncharacteri | 0.169 | 0.254 | 0.314 | 6.3e-14 | |
| UNIPROTKB|Q5HW56 | 728 | CJE0460 "GTP-binding protein" | 0.261 | 0.331 | 0.230 | 7.5e-08 | |
| TIGR_CMR|CJE_0460 | 728 | CJE_0460 "GTP-binding protein" | 0.261 | 0.331 | 0.230 | 7.5e-08 | |
| TIGR_CMR|GSU_0587 | 213 | GSU_0587 "thiamine-phosphate p | 0.180 | 0.779 | 0.282 | 2.3e-06 | |
| UNIPROTKB|Q81SQ1 | 1219 | BAS1479 "Uncharacterized prote | 0.250 | 0.189 | 0.239 | 8.7e-05 | |
| TIGR_CMR|BA_1595 | 1219 | BA_1595 "conserved hypothetica | 0.250 | 0.189 | 0.239 | 8.7e-05 |
| TAIR|locus:2007579 FZL "FZO-like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2547 (901.6 bits), Expect = 9.3e-265, P = 9.3e-265
Identities = 518/859 (60%), Positives = 656/859 (76%)
Query: 67 RPRTLYPGGYKRPEIKVPNVVLQLEPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGEAS 124
RPRTLYPGGYKRPE+ VP ++L+L+ +V++G + LDL+D A+AK V IVV++GG +
Sbjct: 62 RPRTLYPGGYKRPELAVPGLLLRLDADEVMSGNREETLDLVDRALAKSVQIVVIDGGATA 121
Query: 125 GKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSE 184
GK +YEAACLLKS+VK RA LIAERVDIA+AV ASGV LSD+GLPAIVARNT+ S +
Sbjct: 122 GK-LYEAACLLKSLVKGRAYLLIAERVDIASAVGASGVALSDEGLPAIVARNTLMGSNPD 180
Query: 185 SVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFIM--N 242
SV+LPLV R V+ +D+A ASSSEGADFL+ G G++ + +SL +VKIPI++
Sbjct: 181 SVLLPLVARIVKDVDSALIASSSEGADFLI--LGSGEEDTQVADSLLKSVKIPIYVTCRG 238
Query: 243 ASPLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTNEKTDRGEDVSNVKLLD 302
+ + LKSG SGFVISL+DL D L Q N + N+
Sbjct: 239 NEEAKEELQLLKSGVSGFVISLKDLRSSRDVALRQSLDGAYVVNN-----HETQNM---- 289
Query: 303 TSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQID 362
N K+ AGF+K ED++K ++E E+SVL E I++I KA+PLMEEVSLLIDAVS+ID
Sbjct: 290 --NELPEKKNSAGFIKLEDKQKLIVEMEKSVLRETIEIIHKAAPLMEEVSLLIDAVSRID 347
Query: 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPD 422
EPFL+VIVGE+NSGKS+VINALLGKRYLK+GVVPTTNEITFL +SDL SEEQQRC+ HPD
Sbjct: 348 EPFLMVIVGEFNSGKSTVINALLGKRYLKEGVVPTTNEITFLCYSDLESEEQQRCQTHPD 407
Query: 423 GQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV 482
GQY+CYLP+PILK++ IVDTPGTNVILQRQQRLTEEFVPRADL++FV+SADRPLTESEV
Sbjct: 408 GQYVCYLPAPILKDINIVDTPGTNVILQRQQRLTEEFVPRADLLVFVLSADRPLTESEVA 467
Query: 483 FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLE 542
FLRYTQQWKKK VF+LNKSD+Y++A ELEEAISFVKENT KLLN ENV +YPVSARS LE
Sbjct: 468 FLRYTQQWKKKFVFILNKSDIYRDARELEEAISFVKENTRKLLNTENVILYPVSARSALE 527
Query: 543 AKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRI 602
AKLS +S VG+D E++ S+WR+ +F++LEK LYSFLD S++TG ER+RLKLETP+ I
Sbjct: 528 AKLSTASLVGRDDLEIADPGSNWRVQSFNELEKFLYSFLDSSTATGMERIRLKLETPMAI 587
Query: 603 AERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTLSLIDSTKS 662
AERLLSS E LV +DC A++DL A+++I KEY +KME ESISWRR+ LSLID+ +
Sbjct: 588 AERLLSSVEALVRQDCLAAREDLASADKIISRTKEYALKMEYESISWRRQALSLIDNARL 647
Query: 663 RVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLGEYTMWL 722
+VV LI +TL++S+LD+ SYVF+GEKSA++ +TS++Q +I+ PAL + ++LLG+Y WL
Sbjct: 648 QVVDLIGTTLRLSSLDLAISYVFKGEKSASVAATSKVQGEILAPALTNAKELLGKYAEWL 707
Query: 723 QSKNAREGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIEDFSASSTSKMF 782
QS AREG +SFEN+WP+ V + Q+ D Y+L++K D S + I++ SA +TSK
Sbjct: 708 QSNTAREGSLSLKSFENKWPTYVNSKTQLGIDTYDLLQKTDKVSLKTIQNLSAGTTSKRL 767
Query: 783 EQEIREVXXXXXXXXXXXXXXXXXXXXVLPTTLEDLLALGLCSAGGYIAVANFPARRQRV 842
EQ+IREV VLPTTLEDLLALGLCSAGGY+A+ANFP RRQ +
Sbjct: 768 EQDIREVFFVTVGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYVAIANFPYRRQAI 827
Query: 843 IEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELS 902
I KVNK+AD LA+++E+AMQKDL + +L NFV V KPY++ AQL+LDRL IQ ELS
Sbjct: 828 IGKVNKVADALAQQLEDAMQKDLSDATSNLVNFVNIVAKPYREEAQLRLDRLLGIQKELS 887
Query: 903 NVQEKIQTLQVEIQNLHVS 921
+++ K+Q LQV+I NLHVS
Sbjct: 888 DIRSKLQLLQVDIDNLHVS 906
|
|
| DICTYBASE|DDB_G0287331 DDB_G0287331 "dynamin domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 106/279 (37%), Positives = 165/279 (59%)
Query: 302 DTSNSFFGKE--RVAGFVKFEDREKQLIETERS--VLLEAIDVIKKASPLMEEVSLLIDA 357
+T+ F +E + + + +K L E++ ++ E SPL + D+
Sbjct: 52 NTNTQFVNEEFNKARKMIAKDLHKKTLASMEKAYGIMTEYDRTTYNKSPLASSLGSFKDS 111
Query: 358 VSQI-DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQR 416
+ Q+ D FLLV+VGE+NSGKSS +NALLG RYLK+G+ PTT+ I + F + S+
Sbjct: 112 IDQLKDNSFLLVVVGEFNSGKSSFLNALLGDRYLKEGITPTTHRINRIEFGETISQHTIP 171
Query: 417 CERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL 476
I LP LKE +VDTPGTN +++ Q +TE F+P++DLVLFV S DR
Sbjct: 172 SRLSNTEHEIIQLPVEWLKEFSLVDTPGTNAVIEGHQEITEHFIPKSDLVLFVTSIDRAF 231
Query: 477 TESEVVFLRYTQQWKKKVVFVLNKSDLYQN-------AFELEEAISFVKENTMKLLNIEN 529
+ESE +FL ++W KK+V +++K+DL +N EL E I+FVK+N LN+E
Sbjct: 232 SESEKIFLEKVKKWGKKIVVIISKTDLIENNPLSSNAQSELNEVINFVKDNFKSQLNVEP 291
Query: 530 VTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRIN 568
+ I+P+S++ L+AKL +SS++ ++ L+ N++ IN
Sbjct: 292 M-IFPLSSKLALKAKLELSSSINNLNNNLNNNNNSSNIN 329
|
|
| UNIPROTKB|Q3AAB0 CHY_2105 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 5.0e-19, Sum P(3) = 5.0e-19
Identities = 64/248 (25%), Positives = 126/248 (50%)
Query: 428 YLPSPIL-KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRY 486
+ PS +L K ++++DTPG + T F+P+ D LF++SAD P+TE EV FL+
Sbjct: 150 FYPSLLLQKGVVLIDTPGIGSTFRHNTETTLNFLPQCDAALFLVSADPPITEVEVEFLKA 209
Query: 487 TQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVT-IYPVSARSTLEAKL 545
+ + F+LNK D Y E+ ++F+K + + IE ++ VSAR LEA+
Sbjct: 210 VRTKVAHLFFILNKVD-YLKKEEIAALVTFIKNVLREQVGIEGEPPLFCVSARLGLEARK 268
Query: 546 SVSSAVGKDHSELSVNDSHWRINTFDKLEK-LLYSFLDGSSSTGKERMRLKLETPIRIAE 604
+ + S L H+ I+ + +K +L + L ++ + ++L+ +R E
Sbjct: 269 RDDPELW-EQSGLD-EVWHYLIDFLAREKKNVLQTALAKKATDVIADVLMRLQLTLRSLE 326
Query: 605 RLLSSCE---TLVMKDCQDA-KQDLTLANEMIDSLKEYVMKMESESISWRRKTLS-LIDS 659
L+ + + + Q+A +Q + L + ++ K + +E ++ S R+K + L++
Sbjct: 327 MPLAELDERLNIFEQKIQEANRQRIFLGDLLVGDRKRMLEFLEQQAESLRQKARAYLLEI 386
Query: 660 TKSRVVKL 667
+S + ++
Sbjct: 387 VRSNLEQM 394
|
|
| TIGR_CMR|CHY_2105 CHY_2105 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 5.0e-19, Sum P(3) = 5.0e-19
Identities = 64/248 (25%), Positives = 126/248 (50%)
Query: 428 YLPSPIL-KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRY 486
+ PS +L K ++++DTPG + T F+P+ D LF++SAD P+TE EV FL+
Sbjct: 150 FYPSLLLQKGVVLIDTPGIGSTFRHNTETTLNFLPQCDAALFLVSADPPITEVEVEFLKA 209
Query: 487 TQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVT-IYPVSARSTLEAKL 545
+ + F+LNK D Y E+ ++F+K + + IE ++ VSAR LEA+
Sbjct: 210 VRTKVAHLFFILNKVD-YLKKEEIAALVTFIKNVLREQVGIEGEPPLFCVSARLGLEARK 268
Query: 546 SVSSAVGKDHSELSVNDSHWRINTFDKLEK-LLYSFLDGSSSTGKERMRLKLETPIRIAE 604
+ + S L H+ I+ + +K +L + L ++ + ++L+ +R E
Sbjct: 269 RDDPELW-EQSGLD-EVWHYLIDFLAREKKNVLQTALAKKATDVIADVLMRLQLTLRSLE 326
Query: 605 RLLSSCE---TLVMKDCQDA-KQDLTLANEMIDSLKEYVMKMESESISWRRKTLS-LIDS 659
L+ + + + Q+A +Q + L + ++ K + +E ++ S R+K + L++
Sbjct: 327 MPLAELDERLNIFEQKIQEANRQRIFLGDLLVGDRKRMLEFLEQQAESLRQKARAYLLEI 386
Query: 660 TKSRVVKL 667
+S + ++
Sbjct: 387 VRSNLEQM 394
|
|
| UNIPROTKB|Q609N9 MCA1193 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 430 PSPILKEMI-IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ 488
PSP+L + IVDTPG + + +P+ D LFV+SAD+ ++E+E+ FL +
Sbjct: 143 PSPLLGNGVRIVDTPGVGSVFRHNTDTAWARLPQCDAALFVLSADQAVSEAELEFLHEVR 202
Query: 489 QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVS 548
++ ++ F+LNK D+ Q A + F + + + E V ++P+SAR L K
Sbjct: 203 KYAGRIFFLLNKIDILQEA-DTAAIEHFSRRVLAEAVGTE-VRLFPISAREALMGK---- 256
Query: 549 SAVGKDHSELSVNDSHWRINTFDK-LEKLLYS-----FLDGSSSTGKERM--RLKLET 598
G D + L + R+ F LE+ L LD ++S G R+ RL+LET
Sbjct: 257 --AGNDPARLEAS----RLPVFTAALERFLLEEKGALLLDAAAS-GLARLTGRLRLET 307
|
|
| UNIPROTKB|Q5HW56 CJE0460 "GTP-binding protein" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 63/273 (23%), Positives = 130/273 (47%)
Query: 434 LKEMI-IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT--QQW 490
LK I IVDTPG + ++ +++ +T E++ +D ++ +++A + LT+ + FL +
Sbjct: 290 LKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLTQKDADFLVHCLLNSR 349
Query: 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTM-KLLNIENVTIYPVSARSTLEAKLSVSS 549
K + VL K+DL +LEE I + KE+ +L++++ + + L VS+
Sbjct: 350 LSKFLIVLTKADLLSKK-DLEEVIVYTKESLKSRLVDLDENLVEKIDF-------LCVSA 401
Query: 550 AVGKD-HSELSVNDSHWRINTFDKLEKLLYSFL-DGSSS-----TGKERMRLKLETPI-- 600
+ D + L+ +S + + + E L++ L G S K+ + L+L+ +
Sbjct: 402 KMASDFYKGLAPKESLQK-SGMQEFENYLFNELYAGEKSKIALRAYKKELHLELKNILSK 460
Query: 601 -RIAERLLSSCETLVMKDCQDA-----KQDLTLANEMIDSLKEYVMKMESESISWRRKTL 654
+ RL+ + V ++ Q KQ++ L E D + +++K+++ L
Sbjct: 461 YEMQNRLIKENKQGVSEENQKLLLELQKQNILL-KEAQDEISNFIVKLKNIDNGIDNLVL 519
Query: 655 SLIDSTKSRVV---KLIESTLQISNLDIVASYV 684
L K R++ K +++ Q NL + + V
Sbjct: 520 LLAKKLKERLIDEFKYLKNNAQKLNLSRILNIV 552
|
|
| TIGR_CMR|CJE_0460 CJE_0460 "GTP-binding protein" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 63/273 (23%), Positives = 130/273 (47%)
Query: 434 LKEMI-IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT--QQW 490
LK I IVDTPG + ++ +++ +T E++ +D ++ +++A + LT+ + FL +
Sbjct: 290 LKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLTQKDADFLVHCLLNSR 349
Query: 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTM-KLLNIENVTIYPVSARSTLEAKLSVSS 549
K + VL K+DL +LEE I + KE+ +L++++ + + L VS+
Sbjct: 350 LSKFLIVLTKADLLSKK-DLEEVIVYTKESLKSRLVDLDENLVEKIDF-------LCVSA 401
Query: 550 AVGKD-HSELSVNDSHWRINTFDKLEKLLYSFL-DGSSS-----TGKERMRLKLETPI-- 600
+ D + L+ +S + + + E L++ L G S K+ + L+L+ +
Sbjct: 402 KMASDFYKGLAPKESLQK-SGMQEFENYLFNELYAGEKSKIALRAYKKELHLELKNILSK 460
Query: 601 -RIAERLLSSCETLVMKDCQDA-----KQDLTLANEMIDSLKEYVMKMESESISWRRKTL 654
+ RL+ + V ++ Q KQ++ L E D + +++K+++ L
Sbjct: 461 YEMQNRLIKENKQGVSEENQKLLLELQKQNILL-KEAQDEISNFIVKLKNIDNGIDNLVL 519
Query: 655 SLIDSTKSRVV---KLIESTLQISNLDIVASYV 684
L K R++ K +++ Q NL + + V
Sbjct: 520 LLAKKLKERLIDEFKYLKNNAQKLNLSRILNIV 552
|
|
| TIGR_CMR|GSU_0587 GSU_0587 "thiamine-phosphate pyrophosphorylase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 54/191 (28%), Positives = 91/191 (47%)
Query: 85 NVVLQLEPHQVLAGG-DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR- 142
++ L + HQ AGG D L +++ A+A V V L + +++ E A ++ + DR
Sbjct: 7 SLYLITDRHQ--AGGRDLLAVVEGALAGGVRCVQLREKDLPARTLLELARAMRRLT-DRF 63
Query: 143 -ALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAA 201
A LI +RVDIA A A GV L ++G+PA VAR + L+G + A
Sbjct: 64 GARLLINDRVDIALAAGADGVHLGEEGMPAAVARELLGSGR-------LIGVSCHGRGGA 116
Query: 202 FNASSSEGADFLV----------CCFGEGQKADVIENSLFTNVKIPIFIMNASPLVDVSK 251
A+ ++GADF+ +GE D + + + IP+F + ++ +
Sbjct: 117 A-AAVAQGADFITFGPVYPTPSKAAYGEPVGIDQLAATT-KEIHIPVFALGGIKEANIPE 174
Query: 252 FLKSGASGFVI 262
L +GA+G +
Sbjct: 175 ALAAGAAGVAL 185
|
|
| UNIPROTKB|Q81SQ1 BAS1479 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 63/263 (23%), Positives = 121/263 (46%)
Query: 331 RSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL 390
+ LLE + + K E++ L +A++QID+ V+ +GK + L R +
Sbjct: 680 KQALLEDMKAVYKL--FHYEITTLDEALAQIDK----VMKYPSPTGKQKTTFSFL--RAV 731
Query: 391 KDGV-VPTTN-----EITFLRFSDLASEEQQRC-ERHPDGQYICYLPSPILKEMIIVDTP 443
+ G +T+ ++T FSD + E++ C + + Y C L + + +VDTP
Sbjct: 732 QKGYDTVSTHLGEQVQVTLEEFSDYVANEEKSCFVEYMELYYDCALTR---QGVALVDTP 788
Query: 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKK-----KVVFVL 498
G + I R + +++ AD +LFV + + ++ FL + K K+ F++
Sbjct: 789 GADSINARHTDVAFQYIKNADAILFVTYYNHVFSRADREFLIQLGRVKDTFALDKMFFLI 848
Query: 499 NKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSEL 558
N +DL ++ ELE ++ + ++ I N ++ +S+ LE K + +GK+ +
Sbjct: 849 NAADLAESEEELEMVKGYIADQLLQY-GIRNPRLFAISSLCALEEKQGKN--IGKEKYGI 905
Query: 559 SVNDSHWRINTFDKLEKLLYSFL 581
N KLE+ SF+
Sbjct: 906 LQNSG------IAKLEESFTSFM 922
|
|
| TIGR_CMR|BA_1595 BA_1595 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 63/263 (23%), Positives = 121/263 (46%)
Query: 331 RSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL 390
+ LLE + + K E++ L +A++QID+ V+ +GK + L R +
Sbjct: 680 KQALLEDMKAVYKL--FHYEITTLDEALAQIDK----VMKYPSPTGKQKTTFSFL--RAV 731
Query: 391 KDGV-VPTTN-----EITFLRFSDLASEEQQRC-ERHPDGQYICYLPSPILKEMIIVDTP 443
+ G +T+ ++T FSD + E++ C + + Y C L + + +VDTP
Sbjct: 732 QKGYDTVSTHLGEQVQVTLEEFSDYVANEEKSCFVEYMELYYDCALTR---QGVALVDTP 788
Query: 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKK-----KVVFVL 498
G + I R + +++ AD +LFV + + ++ FL + K K+ F++
Sbjct: 789 GADSINARHTDVAFQYIKNADAILFVTYYNHVFSRADREFLIQLGRVKDTFALDKMFFLI 848
Query: 499 NKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSEL 558
N +DL ++ ELE ++ + ++ I N ++ +S+ LE K + +GK+ +
Sbjct: 849 NAADLAESEEELEMVKGYIADQLLQY-GIRNPRLFAISSLCALEEKQGKN--IGKEKYGI 905
Query: 559 SVNDSHWRINTFDKLEKLLYSFL 581
N KLE+ SF+
Sbjct: 906 LQNSG------IAKLEESFTSFM 922
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.5.1.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.5.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 921 | |||
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 6e-54 | |
| pfam00350 | 168 | pfam00350, Dynamin_N, Dynamin family | 4e-22 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 6e-19 | |
| cd00880 | 161 | cd00880, Era_like, E | 8e-15 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 5e-13 | |
| cd09913 | 241 | cd09913, EHD, Eps15 homology domain (EHD), C-termi | 1e-11 | |
| cd04163 | 168 | cd04163, Era, E | 3e-11 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 9e-11 | |
| pfam02581 | 180 | pfam02581, TMP-TENI, Thiamine monophosphate syntha | 1e-10 | |
| cd00564 | 196 | cd00564, TMP_TenI, Thiamine monophosphate synthase | 5e-10 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 2e-09 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 4e-09 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 6e-09 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 7e-09 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 2e-08 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 2e-08 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 2e-08 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 2e-08 | |
| PRK02615 | 347 | PRK02615, PRK02615, thiamine-phosphate pyrophospho | 5e-08 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 6e-08 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 2e-07 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 3e-07 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 5e-07 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 5e-07 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 3e-06 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 5e-06 | |
| COG3596 | 296 | COG3596, COG3596, Predicted GTPase [General functi | 5e-06 | |
| PRK00043 | 212 | PRK00043, thiE, thiamine-phosphate pyrophosphoryla | 5e-06 | |
| PLN02898 | 502 | PLN02898, PLN02898, HMP-P kinase/thiamin-monophosp | 6e-06 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 8e-06 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 2e-05 | |
| COG0218 | 200 | COG0218, COG0218, Predicted GTPase [General functi | 2e-05 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 2e-05 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 3e-05 | |
| TIGR00693 | 196 | TIGR00693, thiE, thiamine-phosphate pyrophosphoryl | 3e-05 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 5e-05 | |
| COG0352 | 211 | COG0352, ThiE, Thiamine monophosphate synthase [Co | 6e-05 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 3e-04 | |
| cd04104 | 197 | cd04104, p47_IIGP_like, p47 GTPase family includes | 4e-04 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 7e-04 | |
| TIGR03598 | 178 | TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi | 0.001 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 0.001 | |
| pfam05049 | 375 | pfam05049, IIGP, Interferon-inducible GTPase (IIGP | 0.002 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 6e-54
Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 41/219 (18%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
FLL +VGE+++GKS+++NALLG+ L GV PTT IT LR+
Sbjct: 1 FLLAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVLRYG----------------- 43
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
+LK +++VDTPG N ++ +TE F+PRAD V+FV+SAD+PLTESE FL
Sbjct: 44 --------LLKGVVLVDTPGLNSTIEHHTEITESFLPRADAVIFVLSADQPLTESEREFL 95
Query: 485 RYTQQW-KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL-LNIENVTIYPVSARSTLE 542
+ +W KK+ FVLNK DL ELEE + + +E L L I+PVSA+ LE
Sbjct: 96 KEILKWSGKKIFFVLNKIDLLSEE-ELEEVLEYSREELGVLELGGGEPRIFPVSAKEALE 154
Query: 543 AKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581
A+L + + F++LE+ L FL
Sbjct: 155 ARLQGDEEL-------------LEQSGFEELEEHLEEFL 180
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 4e-22
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 33/167 (19%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLR--------------------- 405
+ +VG+ ++GKSSV+NALLG+ L G PTT LR
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPTTRRPLVLRLGEEPGAIPGAVKVEYKDGLK 60
Query: 406 ----FSDLASEEQQR-------CERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQR 454
FS+L E + + I + SP++ + +VDTPG + + Q
Sbjct: 61 KFEDFSELREEIEDETDKISGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVGDQD 120
Query: 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNK 500
LTEE++ AD++L V+ A+ L+ SE +FL K+ + VL K
Sbjct: 121 LTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTK 167
|
Length = 168 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 6e-19
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 32/176 (18%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYI 426
V+VG GKSS++NALLG + VP TT + + +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVK------------ 48
Query: 427 CYLPSPILKEMIIVDTPG-TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLR 485
+++VDTPG ++ L + ADL+L V+ + +E + L
Sbjct: 49 ----------LVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLI 98
Query: 486 YTQQWK--KKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ K ++ V NK DL + E+EE +L I V ++ VSA++
Sbjct: 99 LRRLRKEGIPIILVGNKIDLLEER-EVEE-----LLRLEELAKILGVPVFEVSAKT 148
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 8e-15
Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 34/159 (21%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVP--TTNEITFLRFSDLASEEQQRCERHPDGQY 425
I G N GKSS++NALLG+ +P T + + E P G
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRK------------EWELLPLGPV 48
Query: 426 ICYLPSPILKEMIIVDTPG---TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-- 480
+++DTPG + + + + RADLVL V+ +D E E
Sbjct: 49 ------------VLIDTPGLDEEGGLGRERVEEARQVADRADLVLLVVDSDLTPVEEEAK 96
Query: 481 VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519
+ LR K V+ VLNK DL + E E E
Sbjct: 97 LGLLRER---GKPVLLVLNKIDLVPESEEEELLRERKLE 132
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-13
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 36/142 (25%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+VG N GKS++INAL G + P TT R P +
Sbjct: 3 ALVGRPNVGKSTLINALTGAKVAIVSDYPGTT--------------------RDPILGVL 42
Query: 427 CYLPSPILKEMIIVDTPG-------TNVILQRQQRLTEEFVPRADLVLFVISADRPLTES 479
+++I+VDTPG + + E + ADL+L V+ A LTE
Sbjct: 43 GL-----GRQIILVDTPGLIEGASEGKGVEGFNR--FLEAIREADLILLVVDASEGLTED 95
Query: 480 EVVFLRYTQQ-WKKKVVFVLNK 500
+ L ++ KK ++ VLNK
Sbjct: 96 DEEILEELEKLPKKPIILVLNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206740 cd09913, EHD, Eps15 homology domain (EHD), C-terminal domain | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 36/166 (21%)
Query: 370 VGEYNSGKSSVINALLGKRY--LKDGVVPTTNE---------------ITFLRFSDLASE 412
+G+Y++GKS+ IN LLG+ Y L+ G PTT+ + D
Sbjct: 5 LGQYSTGKSTFINYLLGQDYPGLRTGPEPTTDRFTVVMHGEDDGTIPGNALVVDPDKPFR 64
Query: 413 EQQRCERHPDGQYIC-YLPSPILKEMIIVDTPGTNVIL----QRQQR------LTEEFVP 461
+ ++ LP P+L+ + IVDTPG IL QRQ R + F
Sbjct: 65 GLSKFGNGFLNKFEGSTLPHPLLESVTIVDTPG---ILSGEKQRQSRGYDFNAVCRWFAE 121
Query: 462 RADLVLFVISADRPLTESEVVFLRYTQQWKK---KVVFVLNKSDLY 504
RADL+ + + E F R +Q K K+ VLNK+D+
Sbjct: 122 RADLIFLLFDPHKLDISDE--FRRVIEQLKGHESKIRIVLNKADMV 165
|
Dynamin-like C-terminal Eps15 homology domain (EHD) proteins regulate endocytic events; they have been linked to a number of Rab proteins through their association with mutual effectors, suggesting a coordinate role in endocytic regulation. Eukaryotic EHDs comprise four members (EHD1-4) in mammals and single members in Caenorhabditis elegans (Rme-1), Drosophila melanogaster (Past1) as well as several eukaryotic parasites. EHD1 regulates trafficking of multiple receptors from the endocytic recycling compartment (ERC) to the plasma membrane; EHD2 regulates trafficking from the plasma membrane by controlling Rac1 activity; EHD3 regulates endosome-to-Golgi transport, and preserves Golgi morphology; EHD4 is involved in the control of trafficking at the early endosome and regulates exit of cargo toward the recycling compartment as well as late endocytic pathway. Rme-1, an ortholog of human EHD1, controls the recycling of internalized receptors from the endocytic recycling compartment to the plasma membrane. In D. melanogaster, deletion of the Past1 gene leads to infertility as well as premature death of adult flies. Arabidopsis thaliana also has homologs of EHD proteins (AtEHD1 and AtEHD2), possibly involved in regulating endocytosis and signaling. Length = 241 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 3e-11
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 61/187 (32%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI--TFLRFSDLASEEQQRCERH------ 420
I+G N GKS+++NAL+G++ + + + T R+
Sbjct: 8 IIGRPNVGKSTLLNALVGQK-----ISIVSPKPQTT----------------RNRIRGIY 46
Query: 421 --PDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPR--------ADLVLFVI 470
D Q +I VDTPG + + ++ E + + DLVLFV+
Sbjct: 47 TDDDAQ------------IIFVDTPG----IHKPKKKLGERMVKAAWSALKDVDLVLFVV 90
Query: 471 SADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENV 530
A + E + L ++ K V+ VLNK DL ++ +L + +KE
Sbjct: 91 DASEWIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKE------LHPFA 144
Query: 531 TIYPVSA 537
I+P+SA
Sbjct: 145 EIFPISA 151
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 63.5 bits (156), Expect = 9e-11
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 61/189 (32%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTN--EITFLRFSDLASEEQQRCERH------ 420
IVG N GKS+++NAL+G++ + + + T RH
Sbjct: 10 IVGRPNVGKSTLLNALVGQK-----ISIVSPKPQTT----------------RHRIRGIV 48
Query: 421 --PDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPR--------ADLVLFVI 470
D Q +I VDTPG + + +R + + DLVLFV+
Sbjct: 49 TEDDAQ------------IIFVDTPG----IHKPKRALNRAMNKAAWSSLKDVDLVLFVV 92
Query: 471 SADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENV 530
AD + + L ++ K V+ VLNK DL ++ EL + + E ++
Sbjct: 93 DADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE------LMDFA 146
Query: 531 TIYPVSARS 539
I P+SA
Sbjct: 147 EIVPISALK 155
|
Length = 292 |
| >gnl|CDD|217120 pfam02581, TMP-TENI, Thiamine monophosphate synthase/TENI | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAAA 156
G D L++++EA+ V IV L + + + E A L+++ + +I +RVD+A A
Sbjct: 11 GEDLLEVVEEALKGGVTIVQLREKDLDDRELLELAERLRALCRKYGVPLIINDRVDLALA 70
Query: 157 VNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC- 215
V A GV L LP AR + ++G + TL+ A A + GAD++
Sbjct: 71 VGADGVHLGQDDLPVAEARELLGPDK-------IIGVSTHTLEEALEA-EALGADYIGFG 122
Query: 216 -CFGEGQK--ADVIENSLFTN----VKIPIFIMNASPLVDVSKFLKSGASGF-VIS 263
F K A + V IP+ + +V + L++GA G V+S
Sbjct: 123 PVFPTPTKPDAPPLGLEGLRAIAEAVNIPVVAIGGITPENVPEVLEAGADGVAVVS 178
|
Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI. Length = 180 |
| >gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 5e-10
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 25/182 (13%)
Query: 96 LAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDIA 154
L G D L++++ A+ V +V L + S + + E A L+ + + +I +RVD+A
Sbjct: 9 LDGEDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIINDRVDLA 68
Query: 155 AAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLV 214
AV A GV L LP AR + + ++G + +L+ A A GAD++
Sbjct: 69 LAVGADGVHLGQDDLPVAEARALLGPDL-------IIGVSTHSLEEALRA-EELGADYVG 120
Query: 215 C--CFGEGQKADVIE-------NSLFTNVKIPIF-I--MNASPLVDVSKFLKSGASGF-V 261
F K + V+IP+ I + + ++ L +GA G V
Sbjct: 121 FGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITPE---NAAEVLAAGADGVAV 177
Query: 262 IS 263
IS
Sbjct: 178 IS 179
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. Length = 196 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 2e-09
Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY-I 426
IVG N GKS++ N L G+R D +V T +T R D +Y
Sbjct: 1 AIVGRPNVGKSTLFNRLTGRR---DAIVSDTPGVT----------------R--DRKYGE 39
Query: 427 CYLPSPILKEMIIVDTPG----TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV 482
+E I++DT G I + + E + AD++LFV+ LT ++
Sbjct: 40 AEWGG---REFILIDTGGIEPDDEGISKEIREQAEIAIEEADVILFVVDGREGLTPADEE 96
Query: 483 FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSAR 538
+Y ++ KK V+ V+NK D N E EEA F L P+SA
Sbjct: 97 IAKYLRKSKKPVILVVNKID---NIKEEEEAAEFYS------LGFGE--PIPISAE 141
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-09
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 57/219 (26%)
Query: 335 LEAIDVIKKASPLMEEVSLLIDAVSQ---IDEPFLLVIVGEYNSGKSSVINALLGKRYLK 391
L + +K L+ E+ L+ Q + E +VI+G N GKSS++NALLG+ +
Sbjct: 185 LVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRD--R 242
Query: 392 DGVVP---TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448
V TT ++ EE P + +VDT G
Sbjct: 243 AIVTDIAGTTRDVI---------EEDINLNGIP---------------VRLVDTAG---- 274
Query: 449 LQRQQRLTEEFVPR------------ADLVLFVISADRPLTESEVVFLRYTQQWKKKVVF 496
R T++ V R ADLVLFV+ A +PL + ++ + + KK ++
Sbjct: 275 ----IRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPK-KKPIIV 329
Query: 497 VLNKSDLYQNA----FELEEAISFVKENTMKLLNIENVT 531
VLNK+DL +L + + + ++ +
Sbjct: 330 VLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALR 368
|
Length = 454 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-09
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 368 VIVGEYNSGKSSVINALLGKRY-LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
++G+ +GKSS+ NAL G PTT + DG
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQT-----------GGDG--- 46
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF---VPRADLVLFVISA-DRPLTESEVV 482
++++D PG +R + E + +P ADLVL+++ A DR L
Sbjct: 47 ----------LVLLDLPGVGERGRRDREYEELYRRLLPEADLVLWLLDADDRALAADHDF 96
Query: 483 FLRYTQQWKKKVVFVLNKSD 502
+L ++FVLN+ D
Sbjct: 97 YLLPLAGHDAPLLFVLNQVD 116
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 7e-09
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 48/192 (25%)
Query: 363 EPFLLVIVGEYNSGKSSVINALLG-KRYLKDGVVPTT---NEITFLRFSDLASEEQQRCE 418
+P + I+G N GKSS++NALLG +R + + TT ++ F
Sbjct: 1 DPIKIAIIGRPNVGKSSLLNALLGEERVIVSDIAGTTRDSIDVPFEY------------- 47
Query: 419 RHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTE--EF---------VPRADLVL 467
DGQ + ++DT G ++++ ++TE E + RAD+VL
Sbjct: 48 ---DGQ-----------KYTLIDTAG----IRKKGKVTEGIEKYSVLRTLKAIERADVVL 89
Query: 468 FVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI 527
V+ A +TE ++ + K ++ V+NK DL + + + F KE KL +
Sbjct: 90 LVLDASEGITEQDLRIAGLILEEGKALIIVVNKWDLVEKDEKTMKE--FEKELRRKLPFL 147
Query: 528 ENVTIYPVSARS 539
+ I +SA +
Sbjct: 148 DYAPIVFISALT 159
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 2e-08
Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 43/184 (23%)
Query: 368 VIVGEYNSGKSSVINALLGKRYL-KDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQY 425
G N GKSS+INAL ++ L + P T I F D
Sbjct: 3 AFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGD----------------- 45
Query: 426 ICYLPSPILKEMIIVDTPG---TNV---ILQRQQRLTEEFVPRAD---LVLFVISADRPL 476
+ +VD PG V + ++ +L EE++ + V+ +I A
Sbjct: 46 ----------KFRLVDLPGYGYAKVSKEVREKWGKLIEEYLENRENLKGVVLLIDARHGP 95
Query: 477 TESEVVFLRYTQQWKKKVVFVLNKSD-LYQNAFELEEAISFVKENTMKLLNIENVTIYPV 535
T ++ L + ++ + VL K+D L ++ EL + + +KE + L NI +
Sbjct: 96 TPIDLEMLEFLEELGIPFLIVLTKADKLKKS--ELAKVLKKIKE-ELNLFNI-LPPVILF 151
Query: 536 SARS 539
S++
Sbjct: 152 SSKK 155
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 2e-08
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 53/211 (25%)
Query: 347 LMEEVSLLI----DAVSQIDEPFLLVIVGEYNSGKSSVINALLGK-RYLKDGVVPTT--- 398
L++ + L+ + + D P + I+G N GKS+++NALLG+ R + + TT
Sbjct: 151 LLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS 210
Query: 399 NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTE- 457
+I F R +G+ + ++DT G ++R+ ++TE
Sbjct: 211 IDIPFER----------------NGK-----------KYTLIDTAG----IRRKGKVTEG 239
Query: 458 -EF---------VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA 507
E + RAD+VL V+ A +TE ++ + K +V V+NK DL ++
Sbjct: 240 VEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALVIVVNKWDLVKDE 299
Query: 508 FELEEAISFVKENTMKLLNIENVTIYPVSAR 538
EE F KE KL ++ I +SA
Sbjct: 300 KTREE---FKKELRRKLPFLDFAPIVFISAL 327
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 2e-08
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 48/196 (24%)
Query: 333 VLLEAIDVIKKASPLMEEVSLLIDAVSQ---IDEPFLLVIVGEYNSGKSSVINALLGKRY 389
L +++K L+ E+ L+ + Q + E +VI G N GKSS++NALLG+
Sbjct: 181 EFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGE-- 238
Query: 390 LKDGVVPTTNE--ITFLRFSDLAS------EEQQRCERHPDGQYICYLPSPILKEMIIVD 441
E I +D+A EE + P + ++D
Sbjct: 239 ----------ERAIV----TDIAGTTRDVIEEHINLDGIP---------------LRLID 269
Query: 442 TPG----TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFV 497
T G + + + + E + ADLVL V+ A PLTE + L + K V+ V
Sbjct: 270 TAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELK--DKPVIVV 327
Query: 498 LNKSDLYQNAFELEEA 513
LNK+DL EE
Sbjct: 328 LNKADLTGEIDLEEEN 343
|
Length = 449 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 36/182 (19%)
Query: 356 DAVSQIDEPFLLVIVGEYNSGKSSVINALLGK-RYLKDGVVPTTNEITFLRFSDLASEEQ 414
+ ++D+ F L IVG N GKSS++NALL + R + + TT ++ E
Sbjct: 195 YKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVV---------EGD 245
Query: 415 QRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRL----TEEFVPRADLVLFVI 470
+ ++DT G +RL + + + +ADLV++V+
Sbjct: 246 FELNGIL---------------IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVL 290
Query: 471 SADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT----MKLLN 526
A +PLT+ + + + + KK + VLNK DL N LE +S N+ K L
Sbjct: 291 DASQPLTKDDFLII-DLNKSKKPFILVLNKIDLKIN--SLEFFVSSKVLNSSNLSAKQLK 347
Query: 527 IE 528
I+
Sbjct: 348 IK 349
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
| >gnl|CDD|235054 PRK02615, PRK02615, thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-08
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 102 LDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAAAVNAS 160
L++++ A+ V +V A + E A LK + ALF++ +RVDIA AV+A
Sbjct: 160 LEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDRVDIALAVDAD 219
Query: 161 GVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL 213
GV L + LP VAR + ++GR+ + A +EGAD++
Sbjct: 220 GVHLGQEDLPLAVARQLLGPEK-------IIGRSTTNPEEMAKA-IAEGADYI 264
|
Length = 347 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 41/177 (23%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICY 428
I+G N GKS+++NAL+G+ K +V + T R + + + Q I
Sbjct: 11 IIGRPNVGKSTLLNALVGQ---KISIVSPKPQTTRNRIRGIVT--------TDNAQII-- 57
Query: 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPR--------ADLVLFVISADRPLTESE 480
VDTPG + + + E + + DL+LFV+ AD +
Sbjct: 58 ----------FVDTPG----IHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD 103
Query: 481 VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537
L ++ K V+ V+NK D + L + I+F+K+ + I P+SA
Sbjct: 104 EFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKK------LLPFKEIVPISA 154
|
Length = 298 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 46/187 (24%), Positives = 74/187 (39%), Gaps = 58/187 (31%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLA--SEE--------QQR 416
+ I G N+GKSS+INAL G+ D+A S+ +
Sbjct: 9 IGIFGRRNAGKSSLINALTGQ--------------------DIAIVSDVPGTTTDPVYKA 48
Query: 417 CERHPDGQYICYLPSPILKEMIIVDTPGTN----VILQRQQRLTEEFVPRADLVLFVISA 472
E P G P++ ++DT G + + R ++ T E + + DL L V+ A
Sbjct: 49 MELLPLG--------PVV----LIDTAGLDDEGELGELRVEK-TREVLDKTDLALLVVDA 95
Query: 473 DRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTI 532
E E+ + ++ K + V+NK DL + + ELE KL +
Sbjct: 96 GVGPGEYELELIEELKERKIPYIVVINKIDLGEESAELE-----------KLEKKFGLPP 144
Query: 533 YPVSARS 539
VSA +
Sbjct: 145 IFVSALT 151
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 3e-07
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 49/213 (23%)
Query: 338 IDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGK-RYLKDGVVP 396
+D + + P EE + +P + I+G N GKSS+INA+LG+ R + +
Sbjct: 157 LDAVLELLPPDEEEEEEEE-----TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG 211
Query: 397 TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLT 456
TT D E +R DG+ ++DT G ++R+ ++T
Sbjct: 212 TTR--------DSIDIEFER-----DGRKYV-----------LIDTAG----IRRKGKIT 243
Query: 457 E--EF---------VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
E E + RAD+VL VI A ++E ++ ++ + +V V+NK DL +
Sbjct: 244 ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVE 303
Query: 506 NAFELEEAISFVKENTMKLLN-IENVTIYPVSA 537
E K+ + L ++ I +SA
Sbjct: 304 EDEATMEE---FKKKLRRKLPFLDFAPIVFISA 333
|
Length = 444 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDG 423
++ IVG N GKS++ N L G+R +V T +T R D
Sbjct: 3 TPVVAIVGRPNVGKSTLFNRLTGRR---IAIVSDTPGVT----------------R--DR 41
Query: 424 QY-ICYLPSPILKEMIIVDTPG----TNVILQRQQR-LTEEFVPRADLVLFVISADRPLT 477
Y +E I++DT G LQ R + AD++LFV+ +T
Sbjct: 42 IYGDAEWLG---REFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT 98
Query: 478 ESEVVFLRYTQQWKKKVVFVLNKSD 502
++ + ++ KK V+ V+NK D
Sbjct: 99 PADEEIAKILRRSKKPVILVVNKID 123
|
Length = 444 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-07
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 41/177 (23%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+VIVG+ N GKS+++N LLG + P T + + + ++
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTT------RNYVTTVIEED---------- 47
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRA-------DLVLFVISADRPLTES 479
+ ++DT G + + + D+V+ V+ + L +
Sbjct: 48 -----GKTYKFNLLDTAGQ----EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQ 98
Query: 480 EVVFLRYTQQWKKKVVFVLNKSDL--------YQNAFELEEAISFVKENTMKLLNIE 528
+ + + ++ V NK DL F + + NI+
Sbjct: 99 TKEIIHHAES-GVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNID 154
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 3e-06
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 27/141 (19%)
Query: 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQY 425
++ IVG N GKS++ N L GKR D +V T +T R A
Sbjct: 1 VVAIVGRPNVGKSTLFNRLTGKR---DAIVSDTPGVTRDRKYGDAEWGG----------- 46
Query: 426 ICYLPSPILKEMIIVDTPGTN----VILQRQQRLTEEFVPRADLVLFVISADRPLTESEV 481
+E I++DT G + ++ + E + AD++LFV+ LT +
Sbjct: 47 ---------REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE 97
Query: 482 VFLRYTQQWKKKVVFVLNKSD 502
++ ++ K V+ V NK D
Sbjct: 98 EIAKWLRKSGKPVILVANKID 118
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 437 MIIVDTPG----TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKK 492
+ ++DT G + I + E + ADLVL V+ A L E ++ L KK
Sbjct: 53 VRLIDTAGLRETEDEIEKIGIERAREAIEEADLVLLVVDASEGLDEEDLEILELPA--KK 110
Query: 493 KVVFVLNKSDLYQNAFELEE 512
V+ VLNKSDL +A + E
Sbjct: 111 PVIVVLNKSDLLSDAEGISE 130
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 41/218 (18%)
Query: 339 DVIKKASPLMEEVSLLIDAVSQI-DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPT 397
++ S L E + + + EP ++++G +GKSS+INAL + V
Sbjct: 13 GLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV 72
Query: 398 TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTE 457
++ R DG+ +++ DTPG + +
Sbjct: 73 G------------TDITTRLRLSYDGEN-----------LVLWDTPGLGDGKDKDAEHRQ 109
Query: 458 ---EFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSD---------- 502
+++P+ DLVL++I AD ++ FLR K+V+FV+ ++D
Sbjct: 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDS 169
Query: 503 -LYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+Q + +++ I E +L E + VS R
Sbjct: 170 AGHQPSPAIKQFIEEKAEALGRLFQ-EVKPVVAVSGRL 206
|
Length = 296 |
| >gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 5e-06
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 92 PHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAER 150
+ +G D L++++ A+ V +V L + E A LK + + ++ +R
Sbjct: 14 DSRDDSGRDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVNDR 73
Query: 151 VDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGA 210
VD+A AV A GV L LP AR + ++G + TL+ A A+ + GA
Sbjct: 74 VDLALAVGADGVHLGQDDLPVADARALLGPDA-------IIGLSTHTLEEA-AAALAAGA 125
Query: 211 DFLVCCFG 218
D++ G
Sbjct: 126 DYV--GVG 131
|
Length = 212 |
| >gnl|CDD|215486 PLN02898, PLN02898, HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 103 DLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-FLIAERVDIAAAVNASG 161
D + A+ IV L EA + E A ++ + + LI +RVD+A A +A G
Sbjct: 311 DAVRAAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDADG 370
Query: 162 VLLSDQGLPAIVARNTMKDSMSESVVLP--LVGRNVQTLDAAFNASSSEGADFLVC--CF 217
V L +P +AR S++ P ++G + +T + A A +GAD++ C F
Sbjct: 371 VHLGQSDMPVRLAR---------SLLGPGKIIGVSCKTPEQAEQA-WKDGADYIGCGGVF 420
Query: 218 GEGQKAD 224
KA+
Sbjct: 421 PTNTKAN 427
|
Length = 502 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 8e-06
Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 41/188 (21%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDG--- 423
+ I+G + GK+++ +ALL R D EE++R G
Sbjct: 6 IGIIGHVDHGKTTLTDALLYVTGAISK-----ESAKGARVLDKLKEERER------GITI 54
Query: 424 --QYICYLPSPILKEMIIVDTPG-----TNVILQRQQRLTEEFVPRADLVLFVISADR-- 474
+ + + + I+DTPG +I Q AD + V+ A
Sbjct: 55 KIAAVSF--ETKKRLINIIDTPGHVDFTKEMIRGASQ---------ADGAILVVDAVEGV 103
Query: 475 -PLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMK--LLNIENVT 531
P T E + L + ++ +NK D +A ELEE + + ++ E V
Sbjct: 104 MPQTR-EHLLL--AKTLGVPIIVFINKIDRVDDA-ELEEVVEEISRELLEKYGFGGETVP 159
Query: 532 IYPVSARS 539
+ P SA +
Sbjct: 160 VVPGSALT 167
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 2e-05
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 68/200 (34%)
Query: 347 LMEEVSLLIDAVSQIDE---PFLLVIVGEYNSGKSSVINALLGK-RYLKDGVVP---TTN 399
L++ + + + DE P + I+G N GKSS+INALLG+ R + V TT
Sbjct: 153 LLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI---VSDIAGTTR 209
Query: 400 ---EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLT 456
+ F R DGQ + ++DT G ++R+ ++T
Sbjct: 210 DSIDTPFER----------------DGQ-----------KYTLIDTAG----IRRKGKVT 238
Query: 457 E--EF---------VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
E E + RAD+VL VI A +TE ++ + + +V V+NK DL
Sbjct: 239 EGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDL-- 296
Query: 506 NAFELEEAISFVKENTMKLL 525
V E TM+
Sbjct: 297 -----------VDEKTMEEF 305
|
Length = 435 |
| >gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 48/187 (25%)
Query: 368 VIVGEYNSGKSSVINALLGKRYL-----KDGVVPTTNEITFLRFSDLASEEQQRCERHPD 422
G N GKSS+INAL ++ L G T I F D
Sbjct: 28 AFAGRSNVGKSSLINALTNQKNLARTSKTPGR---TQLINFFEVDD-------------- 70
Query: 423 GQYICYLPSPILKEMIIVDTPG------TNVILQRQQRLTEEFVP-RADLVLFV--ISAD 473
E+ +VD PG + ++ ++L EE++ RA+L V I A
Sbjct: 71 -------------ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDAR 117
Query: 474 RPLTESEVVFLRYTQQWKKKVVFVLNKSD-LYQNAFELEEAISFVKENTMKLLNIE-NVT 531
P + + + + + V+ VL K+D L ++ + ++ V E K + V
Sbjct: 118 HPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER--NKQLNKVAEELKKPPPDDQWVV 175
Query: 532 IYPVSAR 538
++ +
Sbjct: 176 LFSSLKK 182
|
Length = 200 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 22/219 (10%)
Query: 286 NEKTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVL-LEAIDVIKKA 344
++ T V LD S+ F E + + + + E ++ LE ++ +
Sbjct: 196 SKVTSFLSAADGVTTLDNSDLDFD-ETLDLLIGLVEDAIEEQEYDQYAANLEGYELDEGD 254
Query: 345 SPLMEEVSLLIDAVSQIDEPF-LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF 403
L+E + + ++ IVG N GKS+++N +LG+R + VV T +T
Sbjct: 255 EDLLEGSGFVAGDEKAGPKAVGVVAIVGRPNVGKSTLVNRILGRR---EAVVEDTPGVTR 311
Query: 404 LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRA 463
R S A + G + D G + + Q + V A
Sbjct: 312 DRVSYDAEWAGTDFKLVDTGGWEA-------------DVEGIDSAIASQ---AQIAVSLA 355
Query: 464 DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502
D V+FV+ LT ++ +R ++ K VV +NK D
Sbjct: 356 DAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKID 394
|
Length = 712 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 46/240 (19%), Positives = 84/240 (35%), Gaps = 33/240 (13%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+V++G+ GK++++N L+G + + N D A P + I
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNL-------DPAK------TIEPYRRNI 54
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-----LTESEV 481
++ + DT G + + L E+ A+ +L V + LTE +
Sbjct: 55 ---------KLQLWDTAGQ----EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWL 101
Query: 482 VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTL 541
LR ++ V NK DL+ EE ++ + + LL + + P A L
Sbjct: 102 EELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLN-REVVLLVLAPKAVLPEVANPAL 160
Query: 542 EAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIR 601
S S G + +EL + +KL + E+ L +
Sbjct: 161 LE-TSAKSLTGPNVNELFKELLRKLLEEIEKLVLKNELRQLDRLNNPIEQAALASFNCVL 219
|
Length = 219 |
| >gnl|CDD|233094 TIGR00693, thiE, thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAAAV 157
D L+ ++ A+ V +V L ++ + A L+ + + F++ +RVD+A A+
Sbjct: 13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVNDRVDLALAL 72
Query: 158 NASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCF 217
A GV L LPA AR + ++G + L+ A +EGAD++ F
Sbjct: 73 GADGVHLGQDDLPASEARALLGPDK-------IIGVSTHNLEELAEA-EAEGADYI--GF 122
Query: 218 G 218
G
Sbjct: 123 G 123
|
This model represents the thiamine-phosphate pyrophosphorylase, ThiE, of a number of bacteria, and N-terminal domains of bifunctional thiamine proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the C-terminal domain corresponds to the bacterial hydroxyethylthiazole kinase (EC 2.7.1.50), ThiM. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI , and neighbors of TenI [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 196 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-05
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 435 KEMIIVDTPG----TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW 490
+E I++DT G + ++ + E + AD++LFV+ LT ++ + ++
Sbjct: 49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS 108
Query: 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537
K V+ V+NK D E +A F L + YP+SA
Sbjct: 109 NKPVILVVNKVD---GPDEEADAYEFYS------LGLGE--PYPISA 144
|
Length = 435 |
| >gnl|CDD|223429 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAAA 156
G D L+ ++ A+ V V L + S + A L+++ + +I +RVD+A A
Sbjct: 20 GVDLLEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALA 79
Query: 157 VNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC- 215
V A GV L +P AR + + ++G + L+ A A GAD++
Sbjct: 80 VGADGVHLGQDDMPLAEARELLGPGL-------IIGLSTHDLEEALEA-EELGADYVGLG 131
Query: 216 -CFGEGQKADV------IENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGF-VIS 263
F K D + V IP+ + L +V + L++GA G V+S
Sbjct: 132 PIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVVS 187
|
Length = 211 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 50/164 (30%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYIC 427
V++G+ GKSS+I +L+ + + + V EIT
Sbjct: 6 VLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEIT------------------------- 39
Query: 428 YLPSPILKEMI---IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
+P+ + E + IVDT Q + L E +A+++ V S DRP T
Sbjct: 40 -IPADVTPERVPTTIVDTSSRP---QDRANLAAEI-RKANVICLVYSVDRPST-----LE 89
Query: 485 RYTQQW---------KKKVVFVLNKSDL--YQNAFELEEAISFV 517
R +W K ++ V NKSDL + LEE + +
Sbjct: 90 RIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPI 133
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206690 cd04104, p47_IIGP_like, p47 GTPase family includes IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 41/162 (25%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKD-----GVVPTTNEITFLRFSDLASEEQQRCERHPDG 423
+ GE +GKSS INAL G + ++ GVV TT + T
Sbjct: 6 VTGESGAGKSSFINALRGIGHEEEGAAPTGVVETTMKRT--------------------- 44
Query: 424 QYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVF 483
Y P P + + D PG EE + ++ F+I + + ++V
Sbjct: 45 ---PY-PHPKFPNVTLWDLPGIGSTAFPPDDYLEE-MKFSEYDFFIIISSTRFSSNDVKL 99
Query: 484 LRYTQQWKKKVVFVLNK--SDLYQNAFELEEAISFVKENTMK 523
+ Q KK FV K SDL + SF KE ++
Sbjct: 100 AKAIQMMGKKFYFVRTKVDSDLSNEQR--SKPRSFNKEQVLQ 139
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protein that participates in the organization of the cis-Golgi compartment. Length = 197 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 28/78 (35%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+VG N GKS++IN LLGK+ K P TT I Q+I
Sbjct: 136 GVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGI----------------------QWI 173
Query: 427 CYLPSPILKEMIIVDTPG 444
+ + ++DTPG
Sbjct: 174 -----KLDDGIYLLDTPG 186
|
Length = 322 |
| >gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 50/186 (26%)
Query: 369 IVGEYNSGKSSVINALLGKRYL-----KDGVVPTTNEITFLRFSDLASEEQQRCERHPDG 423
G N GKSS+INAL ++ L G T I F +D
Sbjct: 23 FAGRSNVGKSSLINALTNRKKLARTSKTPG---RTQLINFFEVND--------------- 64
Query: 424 QYICYLPSPILKEMIIVDTPG------TNVILQRQQRLTEEF-VPRADLVLFVISAD--R 474
+VD PG + ++ Q+L EE+ R +L V+ D
Sbjct: 65 ------------GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH 112
Query: 475 PLTESEVVFLRYTQQWKKKVVFVLNKSD-LYQNAFELEEAISFVKENTMKLLNIENVTIY 533
PL E ++ + + ++ V+ VL K+D L ++ EL + + +K+ L + ++
Sbjct: 113 PLKELDLEMIEWLRERGIPVLIVLTKADKLKKS--ELNKQLKKIKK---ALKKDADDSVQ 167
Query: 534 PVSARS 539
S+
Sbjct: 168 LFSSLK 173
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 39/184 (21%)
Query: 369 IVGEYNSGKSSVINALLG--KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
++G + GK+++ +LL + G F D EE++R G I
Sbjct: 4 VIGHVDHGKTTLTGSLLYQTGAIDRRG-------TRKETFLDTLKEERER------G--I 48
Query: 427 CYLPSPILKEM-----IIVDTPG-----TNVILQRQQRLTEEFVPRADLVLFVISADRPL 476
+ E +DTPG + Q AD L V+ A+ +
Sbjct: 49 TIKTGVVEFEWPKRRINFIDTPGHEDFSKETVRGLAQ---------ADGALLVVDANEGV 99
Query: 477 TESEVVFLRYTQQWKKKVVFVLNKSDL-YQNAFE--LEEAISFVKENTMKLLNIENVTIY 533
L ++ +NK D + F+ L E +K L ++V I
Sbjct: 100 EPQTREHLNIALAGGLPIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPII 159
Query: 534 PVSA 537
P+SA
Sbjct: 160 PISA 163
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|218401 pfam05049, IIGP, Interferon-inducible GTPase (IIGP) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 43/217 (19%)
Query: 336 EAIDVIKKA---SPLMEEVSLLIDAVSQIDEPFLLVIV-GEYNSGKSSVINALLG----- 386
E I +I+ A L + VS++ A+ +I L + V G+ +GKSS INAL G
Sbjct: 3 EVITLIETALREGNLQKVVSIIKKAIQEISSAPLKIAVTGDSGNGKSSFINALRGIGHEE 62
Query: 387 KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446
GVV TT + T Y P +++ D PG
Sbjct: 63 DGSAPTGVVETTMKRT------------------------PY-SHPHFPNVVLWDLPGLG 97
Query: 447 VILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNK--SDLY 504
+ EE + ++ F+I + + ++V + Q+ K+ FV K SDL
Sbjct: 98 ATNFTVETYLEE-MKFSEYDFFIIISSERFSLNDVKLAKAIQRMGKRFYFVRTKLDSDLS 156
Query: 505 ------QNAFELEEAISFVKENTMKLLNIENVTIYPV 535
F E+ + +++N L E V P+
Sbjct: 157 NEQKGKPQTFPKEKVLQNIQDNCRNNLQKEGVKEPPI 193
|
Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localises to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing. Length = 375 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 921 | |||
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 100.0 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 100.0 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 100.0 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 100.0 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 100.0 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 100.0 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 100.0 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 100.0 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 99.96 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 99.96 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.95 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 99.95 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 99.95 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 99.91 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 99.88 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.86 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.85 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.85 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.82 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.81 | |
| PF04799 | 171 | Fzo_mitofusin: fzo-like conserved region; InterPro | 99.81 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.8 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.76 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.76 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 99.75 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.75 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.75 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.73 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.72 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.72 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.71 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.71 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 99.68 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.68 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.67 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 99.67 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.67 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.67 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.67 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.66 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.66 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.66 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.66 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.65 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.65 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.65 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.64 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.64 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.64 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.64 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 99.64 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.63 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.63 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.62 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.62 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.61 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.61 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.61 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.6 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.6 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.59 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.59 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.59 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.59 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 99.59 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.58 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.57 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.57 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.56 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.56 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.55 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.55 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.55 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.55 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.55 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.54 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.54 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.54 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.54 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.54 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.54 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.54 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.54 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.54 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.54 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.54 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.54 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.53 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.53 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.53 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.53 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.53 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.53 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.52 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.52 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.52 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.52 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.52 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.52 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.52 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.52 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.52 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.52 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.51 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.51 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.51 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.51 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.51 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.51 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.51 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.5 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.5 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.5 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.5 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.5 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.49 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.49 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.49 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.49 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.49 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.49 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.49 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.48 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.48 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.48 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.48 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.48 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.48 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.48 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.48 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.48 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.48 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.48 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.48 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.47 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.47 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.47 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.47 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.47 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.47 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.47 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.47 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.46 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.46 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.46 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.46 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.46 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.46 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.46 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.46 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.46 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.45 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.45 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.45 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.45 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.45 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.45 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.45 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.44 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.44 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.44 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.44 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.44 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.44 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.44 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.44 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.44 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.44 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.43 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.43 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.43 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.43 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.43 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.43 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.42 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.42 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.42 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.42 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.42 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 99.42 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.42 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.41 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.41 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.41 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.41 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.41 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.41 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.41 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.41 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.41 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.4 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.4 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.4 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.4 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.39 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.39 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.39 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.39 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.39 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.38 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.38 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.38 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.38 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.38 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.38 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.38 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.38 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.38 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.38 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.38 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.37 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.37 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 99.37 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.36 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.36 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.36 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.36 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.36 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 99.35 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.35 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.35 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.34 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.34 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.34 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.34 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.33 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 99.33 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.33 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.32 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.32 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.32 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.31 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.3 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.29 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.29 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.28 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.28 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 99.28 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.28 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.28 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.27 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.26 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.26 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.24 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.24 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.24 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.23 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.23 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.22 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.22 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.21 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.2 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.2 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.2 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.2 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.2 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.2 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.18 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 99.18 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.17 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 99.17 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.16 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.15 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.14 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.14 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.14 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.13 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.13 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.12 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.1 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.1 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.1 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.09 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.09 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.08 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 99.08 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.07 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.07 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.07 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.06 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.06 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.06 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.05 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.04 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.04 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 99.04 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.02 | |
| PRK13768 | 253 | GTPase; Provisional | 99.01 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.0 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.0 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 98.99 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 98.99 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 98.99 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.98 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.97 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 98.97 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.97 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 98.97 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 98.96 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 98.95 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 98.93 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 98.93 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 98.92 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.92 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.92 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.9 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 98.9 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 98.88 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 98.88 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 98.86 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 98.85 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.84 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.84 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 98.84 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.83 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.83 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.82 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.81 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 98.81 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.8 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.79 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.79 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.78 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 98.77 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 98.76 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 98.73 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.73 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.71 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 98.69 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 98.68 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 98.66 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.62 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 98.62 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.61 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.6 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.59 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.58 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 98.57 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 98.56 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 98.56 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 98.55 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 98.54 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.53 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.52 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.51 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.51 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.48 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 98.48 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 98.46 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.44 | |
| PTZ00099 | 176 | rab6; Provisional | 98.42 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.41 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.39 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 98.39 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.37 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 98.36 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.35 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 98.35 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.34 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 98.34 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.34 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.31 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.31 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.31 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 98.3 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.28 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.27 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.26 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.25 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.24 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.23 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.23 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.22 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.2 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.17 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.14 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.14 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.12 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.12 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.11 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.11 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.08 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 98.08 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.07 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.0 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.99 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 97.99 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.98 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.95 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.95 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.95 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 97.94 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 97.93 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 97.93 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 97.93 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.86 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.85 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.85 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 97.85 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.84 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.83 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.81 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.81 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 97.78 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 97.75 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 97.75 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.74 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.73 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.73 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.72 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.72 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.72 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.69 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.68 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.68 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 97.66 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 97.65 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.65 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.63 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.6 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.6 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.59 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.57 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.54 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 97.53 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.52 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 97.52 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 97.49 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 97.49 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.48 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 97.48 | |
| PF05879 | 742 | RHD3: Root hair defective 3 GTP-binding protein (R | 97.44 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.44 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.43 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.42 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.4 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 97.4 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 97.37 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.37 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 97.37 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.36 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.36 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.35 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 97.34 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.33 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.3 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.28 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.28 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 97.28 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.27 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.26 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.2 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.17 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 97.16 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.12 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.1 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.08 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.08 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.08 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 97.07 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 97.06 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.05 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.05 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.03 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 96.99 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 96.96 | |
| KOG2203 | 772 | consensus GTP-binding protein [General function pr | 96.91 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 96.84 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 96.8 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 96.8 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 96.8 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 96.79 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 96.77 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 96.75 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 96.74 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.74 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.73 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 96.71 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.71 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 96.64 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.55 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.49 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 96.48 | |
| PLN02591 | 250 | tryptophan synthase | 96.48 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 96.47 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 96.44 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 96.41 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.4 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.39 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 96.39 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 96.37 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 96.31 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.23 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 96.22 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.21 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 96.2 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 96.2 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 96.17 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.15 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 96.13 |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=392.23 Aligned_cols=533 Identities=15% Similarity=0.174 Sum_probs=405.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchh------hc----------cc------cc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQ------QR----------CE------RH 420 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~------~~----------~~------~~ 420 (921)
..++|+|+|.+++||||+||||+.++++|.+..|||.++..+...+...... +. .. ..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 5789999999999999999999999999999999999999987764332110 00 00 11
Q ss_pred CCCeEEeecC---CCccc-ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEE
Q 002437 421 PDGQYICYLP---SPILK-EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVF 496 (921)
Q Consensus 421 ~~g~~~~~~p---~~~l~-~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~viv 496 (921)
..-.+.++|| +++|+ +++++|.||++ ..++...++..++.++|++|||+++.+.++.++++|++...+.+++|||
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld-~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFI 266 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLD-VDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFI 266 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCC-CchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEE
Confidence 1112556788 55775 69999999997 5577889999999999999999999999999999999999988899999
Q ss_pred EEeCCCCCCChHH-HHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCcccc-ccchHHHH
Q 002437 497 VLNKSDLYQNAFE-LEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWR-INTFDKLE 574 (921)
Q Consensus 497 VlNK~D~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~-~sg~~~L~ 574 (921)
+.||||...++.+ .+.+++++.+.-..........||+||++..++++.....+.... ..+ ++..+. ---|++|+
T Consensus 267 lnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~l~~r~q~a~g~pe~--~~~-aeg~~~r~~efqdFe 343 (749)
T KOG0448|consen 267 LNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEVLNARTQNANGNPEH--GAL-AEGFYARFIEFQDFE 343 (749)
T ss_pred EechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccchhhhhhhhcCCCccc--ccc-cccccccccccccHH
Confidence 9999999887544 666777754211111112357899999999999888655432221 111 111111 11245566
Q ss_pred HHHHHhhccCCccchHHHHHhhcCHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002437 575 KLLYSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDCQDAK----QDLTLANEMIDSLKEYVMKMESESISWR 650 (921)
Q Consensus 575 ~~l~~~l~~~~~~~~e~~~~kl~~~~~~~~~il~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 650 (921)
.+++++. ...++.|+++++..+..+++.+...+........ .....+++..+.++....++....+...
T Consensus 344 -~fE~cis------~salktkf~~h~~rak~~l~~v~~~idsv~~~~~~~~~~~~~~~ne~~~~l~~~~~~~~~~~~~~k 416 (749)
T KOG0448|consen 344 -KFEECIS------QSALKTKFEQHLHRAKQYLSKVKLDIDSVSESAEKFRSVIQNELNERLETLKPTVINALLGKRDLK 416 (749)
T ss_pred -HHHHHHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 6677776 6788889999999999999888887776644433 3344455566677777788887778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCcccCCCcchhHHHhhhcchHHHHHHHHHHHHHHHHHhhHHhH
Q 002437 651 RKTLSLIDSTKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLGEYTMWLQSKNAREG 730 (921)
Q Consensus 651 ~~l~~~i~~~~~~~~~~l~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 730 (921)
+.+.+..+++...+...+.++ .+|. ++-+++|++-..-.|+..+...+.++ +.+++.++|........
T Consensus 417 ~kv~q~~eev~~~vs~~~~eE----Lid~-----~~~~fhp~~~~~g~yk~yl~~~i~~~---l~~nl~dr~~~~~~~~i 484 (749)
T KOG0448|consen 417 EKVEQLTEEVTFKVSSDLEEE----LIDA-----FDCPFHPSPKYLGQYKCYLPAFIEKD---LGSNLVDRCSTESENVI 484 (749)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHH-----hcCCCCCCccccceeeehhhHHHHHH---HhHHHHHHhcchHHHHH
Confidence 888888888888888888887 2466 67788877666677777777777777 66678887777777666
Q ss_pred HHHHHHHHhcCCccc----------------------------------CCCCcCCcchHHHHHh--hhccHHHHhhccC
Q 002437 731 RRYKESFENRWPSLV----------------------------------YLQPQVYPDMYELVRK--VDGYSSRVIEDFS 774 (921)
Q Consensus 731 ~~~~~~~~~~~~~~~----------------------------------~~~~~f~~~~~~l~~~--~~~~~~~~l~~~~ 774 (921)
..-++.+.+.+..++ ...|+|+|+|..++.+ ++.+....+.+..
T Consensus 485 ~q~qqe~~~~i~~i~~~~~~~~l~~vv~~q~F~~~~~l~~~~L~~df~ed~~F~ft~g~~~~~~r~~~p~~~~p~l~~~~ 564 (749)
T KOG0448|consen 485 LQRQQELTEEIVPILKNEFDSDLLVVVRSQMFRLSYHLNCKKLKADFQEDLEFRFTWGWFALILRFLGPVNGRPLLEGQT 564 (749)
T ss_pred HHHHHHHHHHHhhhccchhhhhHHHHHHhhhhhhhhccchhhhhhhhhhhhhhhhccchHHHHHHhhcCCCCCchhhccc
Confidence 665555554433222 2228999999999988 3344555554443
Q ss_pred Cc--------------ccchhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHH--HHHHHHHHHHHHhhchhh
Q 002437 775 AS--------------STSKMFEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLA--LGLCSAGGYIAVANFPAR 838 (921)
Q Consensus 775 ~~--------------~~~~~~~~~~~~~~~~t~~~~g~~g~~a~~~~~i~~~~~~~~~g--~~~~~~~~~~~l~~~~~~ 838 (921)
.. ......+ +....+..+..++...++++++++.++++++|+.+| ++.++.+.|+++|+|++.
T Consensus 565 ~~~~l~l~~~~~~~~v~~~~~~~-s~e~l~~t~v~t~as~~~~~t~gvlnvggvi~K~vgwr~l~~l~a~y~~ly~~erl 643 (749)
T KOG0448|consen 565 NQFQLGLTQQPKKKFVPILPKSS-SIEQLLLTMVTTLASFTLGGTRGVLNVGGVILKPVGWRSLSALLAPYGGLYLYERL 643 (749)
T ss_pred cccccchhccccCCCcccccccC-CHHHHHHHhhHHHHHHhcccceEEEEecceEEEeechHHHHHhhhHHHHHHhhhhc
Confidence 21 1111121 233444446778888889998888899999999999 678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002437 839 RQRVIEKVNKIADGLAREIEEAMQ-----------KDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEK 907 (921)
Q Consensus 839 ~~~~~~k~r~~~~~~~~~~~~~l~-----------~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 907 (921)
+|++.++.|.++.||+++++++|+ +|+.+|+..+++.+|..++..++.++++++.+.+..+.++.+++.
T Consensus 644 ~w~i~dkeralk~q~~~~~~kkLq~~~~~h~a~cs~qi~~El~~vfa~l~r~v~~~~~~~~d~~~~~~~~le~lds~q~~ 723 (749)
T KOG0448|consen 644 TWTIHDKERALKVQFVNHLKKKLQEFDDSHTANCSHQIRQELRTVFAILCRTVDRVEEQMRDDLLATKKQLESLDSIQSR 723 (749)
T ss_pred eeeecCchhhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcc
Q 002437 908 IQTLQVEIQNLH 919 (921)
Q Consensus 908 ~~~l~~~~~~l~ 919 (921)
+|.+|+++.++.
T Consensus 724 ~K~~~~ka~~l~ 735 (749)
T KOG0448|consen 724 LKFFRSKALKLE 735 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999999998664
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=404.71 Aligned_cols=250 Identities=24% Similarity=0.325 Sum_probs=220.9
Q ss_pred ccccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcCCchhhhhhccccccccc---------cCCCcccccccccc----
Q 002437 4 LLSLHHAPTRVPAPRFLSDPYFPIPRFKPPPHRTHFPIKSISNDNSFRSEDSA---------AAPVISEKQQRPRT---- 70 (921)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---- 70 (921)
|+.||+++|+++|| |++|| |++|+||+|.+|.++.+|++||++|+||+. .+|++++.++.+|+
T Consensus 51 ~~~~~~~~~~~~r~-~~~d~---~~~l~~~~e~~r~~~~~~~~an~~r~qea~rvlee~~k~~~~~~~~~~~~~ry~~y~ 126 (347)
T PRK02615 51 LGRWHTEELRQARD-TPTDP---GTGLSHPQEEQRSTLEQVVSANAARVQEALRVLEEYGKLYDPELAAAAKQIRYELYT 126 (347)
T ss_pred HhhcChHHHHHhcC-CCCCc---CCCCCChhhhcccCHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 67999999999999 59999 999999999999999999999999999995 33666778888883
Q ss_pred ----cCCC--CCCCCccCCCCceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-Cc
Q 002437 71 ----LYPG--GYKRPEIKVPNVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RA 143 (921)
Q Consensus 71 ----~~~~--~~~~~~~~l~~~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~ 143 (921)
++.. ++++ ..+|-.+++|+|||+. .++++.+++++++|+.+||||+|++++.++.+.|+.+..+|+. ++
T Consensus 127 le~~~~~~~~~~~~-~~~l~~~~LylIT~~~---~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~ 202 (347)
T PRK02615 127 LESELLNASLGKKR-RQRLKDARLYLITSPS---ENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGA 202 (347)
T ss_pred HHHHHHHhcccHHH-HHhhccCCEEEEECCc---hhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2311 2122 2245567899999982 3688999999999999999999999999999999999999999 99
Q ss_pred eEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--
Q 002437 144 LFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E-- 219 (921)
Q Consensus 144 ~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T-- 219 (921)
+|||||++|+|.++++||||||+.|+|...+|+++| |+ + +||+||||++++..| ...|||||++||+ |
T Consensus 203 ~lIIND~vdlAl~~~aDGVHLgq~dl~~~~aR~llg---~~-~---iIG~S~Hs~~e~~~A-~~~GaDYI~lGPvf~T~t 274 (347)
T PRK02615 203 LFIVNDRVDIALAVDADGVHLGQEDLPLAVARQLLG---PE-K---IIGRSTTNPEEMAKA-IAEGADYIGVGPVFPTPT 274 (347)
T ss_pred eEEEeChHHHHHHcCCCEEEeChhhcCHHHHHHhcC---CC-C---EEEEecCCHHHHHHH-HHcCCCEEEECCCcCCCC
Confidence 999999999999999999999999999999999987 66 3 899999999999999 7999999999999 4
Q ss_pred CC---CCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 220 GQ---KADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 220 k~---~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|+ +.|++ ..++++.+++||||||||+++|+.++.++|++|||++++.+..
T Consensus 275 Kp~~~~~Gle~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 275 KPGKAPAGLEYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCC
Confidence 43 23454 5788888999999999999999999999999999999999864
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=318.07 Aligned_cols=176 Identities=24% Similarity=0.305 Sum_probs=160.6
Q ss_pred ceEEEEcCCCCCCC-ch-HHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 86 VVLQLEPHQVLAGG-DA-LDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 86 ~~lylit~~~~~~~-~~-~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
+++|+||++..... .. +.++++++++|+++||||+|+.++.++++.|++++++|+. +++||||||+|+|.+++||||
T Consensus 6 ~~lylvt~~~~~~~~~~~~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGV 85 (211)
T COG0352 6 LRLYLVTDRPLIYDGVDLLEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGV 85 (211)
T ss_pred cceEEEcCCccccccchhHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEE
Confidence 48999999876554 33 7999999999999999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC---CCcc-hhhhhhcC
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK---ADVI-ENSLFTNV 234 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~---~g~~-~~~~~~~~ 234 (921)
||||+|++...+|++++ +. + +||+||||.+|+.+| .+.|+||+++||| ||+. .|++ ..++.+..
T Consensus 86 HlGq~D~~~~~ar~~~~---~~-~---iIG~S~h~~eea~~A-~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~ 157 (211)
T COG0352 86 HLGQDDMPLAEARELLG---PG-L---IIGLSTHDLEEALEA-EELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV 157 (211)
T ss_pred EcCCcccchHHHHHhcC---CC-C---EEEeecCCHHHHHHH-HhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC
Confidence 99999999999999996 55 3 799999999999999 8999999999999 4542 2444 57888888
Q ss_pred CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 ~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||||||||+++|+.++.++|++||||++|.+..
T Consensus 158 ~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 158 NIPVVAIGGINLENVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred CCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcC
Confidence 89999999999999999999999999999999875
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=305.53 Aligned_cols=177 Identities=18% Similarity=0.175 Sum_probs=159.7
Q ss_pred CceEEEEcCCCCCCCchHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 85 NVVLQLEPHQVLAGGDALDLIDEAVAKF-VGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 85 ~~~lylit~~~~~~~~~~~~~~~~l~~g-~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
.++||+||++......+++.+++++.+| +++||||+|+++..++++++++++++|+. |++|||||++|+|.++|||||
T Consensus 12 ~~~ly~It~~~~~~~~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~~dlA~~~~adGV 91 (221)
T PRK06512 12 RCRIVLVAPPIADGAELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGDSRIAGRVKADGL 91 (221)
T ss_pred CCeEEEEeCCCcccccHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCHHHHHHHhCCCEE
Confidence 4479999998654458999999999999 79999999999999999999999999999 999999999999999999999
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEe-cCCHHHHHcccccCCCCEEEeCCC---CCC---CCCcc-hhhhhhcC
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRN-VQTLDAAFNASSSEGADFLVCCFG---EGQ---KADVI-ENSLFTNV 234 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S-~h~~~e~~~A~~~~gaDyv~~gpv---Tk~---~~g~~-~~~~~~~~ 234 (921)
|||++|++...+|+.+| ++ . +||+| ||+.+++.+| .+.||||++|||| ||+ +.|++ .+++++.+
T Consensus 92 HLg~~d~~~~~~r~~~~---~~-~---iiG~s~~~s~~~a~~A-~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~ 163 (221)
T PRK06512 92 HIEGNLAALAEAIEKHA---PK-M---IVGFGNLRDRHGAMEI-GELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI 163 (221)
T ss_pred EECccccCHHHHHHhcC---CC-C---EEEecCCCCHHHHHHh-hhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC
Confidence 99999999999999887 66 3 79999 5789999998 7899999999999 444 23555 57889999
Q ss_pred CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 ~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||||||||+++|+.+++++||+|||++++.++.
T Consensus 164 ~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 164 EIPCIVQAGSDLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred CCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 99999999999999999999999999999988764
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=296.12 Aligned_cols=170 Identities=24% Similarity=0.368 Sum_probs=147.8
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCC
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSD 166 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~ 166 (921)
||+|||+..+..++++.+++++++|+++||||+|++++.++.++++.+.++|+. +++++|||++|+|.++++|||||++
T Consensus 1 ly~It~~~~~~~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~ 80 (180)
T PF02581_consen 1 LYLITDPRLCGDDFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQ 80 (180)
T ss_dssp EEEEE-STTSTCHHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBT
T ss_pred CEEEeCCchhcchHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecc
Confidence 799999988767899999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred CCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----Ccc-hhhhhhcCCCCE
Q 002437 167 QGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----DVI-ENSLFTNVKIPI 238 (921)
Q Consensus 167 ~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g~~-~~~~~~~~~~Pv 238 (921)
.+++...+|+.++ ++ + +||+||||.+|+.+| .+.|+||++|||| |.+++ |+. ..++++.+++||
T Consensus 81 ~~~~~~~~r~~~~---~~-~---~ig~S~h~~~e~~~a-~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv 152 (180)
T PF02581_consen 81 SDLPPAEARKLLG---PD-K---IIGASCHSLEEAREA-EELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPV 152 (180)
T ss_dssp TSSSHHHHHHHHT---TT-S---EEEEEESSHHHHHHH-HHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCE
T ss_pred cccchHHhhhhcc---cc-e---EEEeecCcHHHHHHh-hhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCE
Confidence 9999999999886 66 3 899999999999999 7899999999999 44433 333 478899999999
Q ss_pred EEEcCCCccChHHHHHcCCcEEEEeec
Q 002437 239 FIMNASPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 239 ~aiGGi~~~~~~~~~~~Ga~gva~~~a 265 (921)
||||||+++|+.+++++||+|||+++|
T Consensus 153 ~AlGGI~~~~i~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 153 YALGGITPENIPELREAGADGVAVISA 179 (180)
T ss_dssp EEESS--TTTHHHHHHTT-SEEEESHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEEEee
Confidence 999999999999999999999998876
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=303.74 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=153.4
Q ss_pred CceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEE
Q 002437 85 NVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVL 163 (921)
Q Consensus 85 ~~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvH 163 (921)
...||+|||+. +++++++++|+++||||+|+++..+++++++++.++|+. +++|||||++++|.++||||||
T Consensus 210 ~l~LY~Vtd~~-------~~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~gAdGVH 282 (437)
T PRK12290 210 SLGLYPVVDDV-------EWIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFINDYWQLAIKHQAYGVH 282 (437)
T ss_pred CceEEEEeCCH-------HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHcCCCEEE
Confidence 45699999872 579999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCC----CCCcc-hhhhhhcC
Q 002437 164 LSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQ----KADVI-ENSLFTNV 234 (921)
Q Consensus 164 L~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~----~~g~~-~~~~~~~~ 234 (921)
|||+|++...+|+++| ++ + +||+|||+.+|+.+| ...|+|||++||| ||+ +.|++ .+++++..
T Consensus 283 LGQeDL~~~~aR~ilg---~~-~---iIGvStHs~eEl~~A-~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~ 354 (437)
T PRK12290 283 LGQEDLEEANLAQLTD---AG-I---RLGLSTHGYYELLRI-VQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLI 354 (437)
T ss_pred cChHHcchhhhhhhcC---CC-C---EEEEecCCHHHHHHH-hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 9999999999999986 55 3 799999999999999 8999999999999 554 23554 45555443
Q ss_pred ---------CCCEEEEcCCCccChHHHHHcCCcEEEEeecccccc
Q 002437 235 ---------KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 235 ---------~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
++||||||||+++|+.+++++|++||||++|.++..
T Consensus 355 ~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~ 399 (437)
T PRK12290 355 DTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAE 399 (437)
T ss_pred hhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcCC
Confidence 799999999999999999999999999999998753
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=282.74 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=150.0
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLS 165 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~ 165 (921)
+||+||+.. ..+++++++|+.+||||+|+++..++..++.++..+|+. ++++||||++++|.++++||||||
T Consensus 14 ~ly~i~~~~-------~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd~~~lA~~~~adGVHlg 86 (211)
T PRK03512 14 GLYPVVDSV-------QWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQARLFINDYWRLAIKHQAYGVHLG 86 (211)
T ss_pred eEEEEECCH-------HHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCHHHHHHHcCCCEEEcC
Confidence 599999872 569999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--CCC----CCcc-hhhhhhc-CC
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E--GQK----ADVI-ENSLFTN-VK 235 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T--k~~----~g~~-~~~~~~~-~~ 235 (921)
+.|++...+|..+| ++ + +||+|||+.+++.+| .+.|+||+++||+ | |+. .|+. ...+.+. .+
T Consensus 87 ~~d~~~~~~r~~~~---~~-~---~iG~S~H~~~e~~~A-~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~ 158 (211)
T PRK03512 87 QEDLETADLNAIRA---AG-L---RLGVSTHDDMEIDVA-LAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLAD 158 (211)
T ss_pred hHhCCHHHHHHhcC---CC-C---EEEEeCCCHHHHHHH-hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 99999999999876 55 3 899999999999999 7899999999999 4 442 2333 3555555 58
Q ss_pred CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 236 IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 236 ~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+||||||||+++|+.+++++|++|||++++.++.
T Consensus 159 ~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai~~~ 192 (211)
T PRK03512 159 YPTVAIGGISLERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred CCEEEECCCCHHHHHHHHHcCCCEEEEhhHhhCC
Confidence 9999999999999999999999999999988764
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=303.12 Aligned_cols=193 Identities=17% Similarity=0.189 Sum_probs=166.2
Q ss_pred cccccccccCCCCCCCC--ccCCCCceEEEEcCCCCCC-CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Q 002437 63 EKQQRPRTLYPGGYKRP--EIKVPNVVLQLEPHQVLAG-GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVV 139 (921)
Q Consensus 63 ~~~~~~~~~~~~~~~~~--~~~l~~~~lylit~~~~~~-~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~ 139 (921)
...+.....||+.++.. .+.+| ++|+|||+.... ..+++.+++++.+|+++||||+|+.+..++.++++.++.+|
T Consensus 107 ~~~el~~~~~~~~~~~i~~~l~lp--~ly~it~~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~ 184 (312)
T PRK08999 107 APDELAVYPFPPANQPIVRALRLP--DTYLITPEGEDGDAAFLARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLC 184 (312)
T ss_pred cHHHcccCCCCcchHHHHHHhcCC--CEEEEECccccccHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34445555666554443 33556 999999987765 36789999999999999999999999999999999999999
Q ss_pred hc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC
Q 002437 140 KD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG 218 (921)
Q Consensus 140 ~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv 218 (921)
++ +++|||||++|+|.++|+||||||+.|++...+|+ ++ ++ + +||+||||.+++.+| ...|+||+++||+
T Consensus 185 ~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~r~-~~---~~-~---~ig~S~h~~~~~~~a-~~~~~dyi~~gpv 255 (312)
T PRK08999 185 RRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAARP-LP---AG-R---WVAASCHDAEELARA-QRLGVDFAVLSPV 255 (312)
T ss_pred HHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhhcc-CC---CC-C---EEEEecCCHHHHHHH-HhcCCCEEEECCC
Confidence 99 99999999999999999999999999999988888 65 56 3 799999999999999 7999999999999
Q ss_pred --CCCC-----CCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeecc
Q 002437 219 --EGQK-----ADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 219 --Tk~~-----~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
|.++ .|+. .+++++.+++||||||||+++|+.+++++||+|||++++.
T Consensus 256 f~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 256 QPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 4332 3444 5788888999999999999999999999999999888764
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=285.83 Aligned_cols=177 Identities=23% Similarity=0.325 Sum_probs=159.6
Q ss_pred CceEEEEcCCCCC---CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCC
Q 002437 85 NVVLQLEPHQVLA---GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNAS 160 (921)
Q Consensus 85 ~~~lylit~~~~~---~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~ 160 (921)
.+++|+|||+... ...+++.+++++++|+.+||||+|+++.+++++++++++++|+. +++|||||++++|.++|+|
T Consensus 290 ~~~ly~it~~~~~~~~~~~~~~~l~~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~~~lA~~~~ad 369 (502)
T PLN02898 290 NLFLYAVTDSGMNKKWGRSTVDAVRAAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDAD 369 (502)
T ss_pred CceEEEEECccccccccchHHHHHHHHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcChHHHHHhcCCC
Confidence 3579999998553 34688999999999999999999999999999999999999999 9999999999999999999
Q ss_pred eEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC---CCcc-hhhhhh
Q 002437 161 GVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK---ADVI-ENSLFT 232 (921)
Q Consensus 161 GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~---~g~~-~~~~~~ 232 (921)
||||++.|++...+|+.++ ++ + +||+|||+.+|+.+| .+.||||+++||+ ||+. .|++ .+++++
T Consensus 370 GvHl~~~d~~~~~~r~~~~---~~-~---~iG~S~h~~~e~~~a-~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~ 441 (502)
T PLN02898 370 GVHLGQSDMPVRLARSLLG---PG-K---IIGVSCKTPEQAEQA-WKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCE 441 (502)
T ss_pred EEEeChHhcCHHHHHHhcC---CC-C---EEEEeCCCHHHHHHH-hhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999886 66 3 799999999999999 7999999999999 4432 2444 578888
Q ss_pred cCCCCEEEEcCCCccChHHHHHcCCc---EEEEeeccccc
Q 002437 233 NVKIPIFIMNASPLVDVSKFLKSGAS---GFVISLEDLSL 269 (921)
Q Consensus 233 ~~~~Pv~aiGGi~~~~~~~~~~~Ga~---gva~~~a~~~~ 269 (921)
..++||||||||+++|+.+++++|++ |||++++.+..
T Consensus 442 ~~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 442 ASKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred cCCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcC
Confidence 88999999999999999999999999 99999988753
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=248.93 Aligned_cols=175 Identities=23% Similarity=0.320 Sum_probs=155.4
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLS 165 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~ 165 (921)
++|+|||+..+..++++.+++++++|+++||||.|+.++.++.+.+.++..+|+. +++|++|+++++|.++|+|||||+
T Consensus 1 ~ly~it~~~~~~~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~~~la~~~g~~GvHl~ 80 (196)
T TIGR00693 1 GLYLITDPQDGPADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVNDRVDLALALGADGVHLG 80 (196)
T ss_pred CEEEEECCccccccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEECHHHHHHHcCCCEEecC
Confidence 4899999876655789999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC--C--Ccc-hhhhhhcC-C
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK--A--DVI-ENSLFTNV-K 235 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~--~--g~~-~~~~~~~~-~ 235 (921)
+.+++...+|+.++ ++ . ++|+|||+.+++.+| .+.|+||+++||+ ||+. + |++ ..++++.. +
T Consensus 81 ~~~~~~~~~r~~~~---~~-~---~ig~s~h~~~e~~~a-~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~ 152 (196)
T TIGR00693 81 QDDLPASEARALLG---PD-K---IIGVSTHNLEELAEA-EAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSID 152 (196)
T ss_pred cccCCHHHHHHhcC---CC-C---EEEEeCCCHHHHHHH-hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 99999999999875 44 2 799999999999998 7999999999999 3432 2 444 46776655 5
Q ss_pred CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 236 IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 236 ~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+||+|+|||+++|+.++.++|++|||+.++.++.
T Consensus 153 ~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred CCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 9999999999999999999999999888887754
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=245.33 Aligned_cols=323 Identities=17% Similarity=0.174 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCC
Q 002437 330 ERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDL 409 (921)
Q Consensus 330 ~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~ 409 (921)
+++.+.+.+..+++...++.. ..+.++|+|++|+|||||+|+|+|..++|++..++|..++.+.++..
T Consensus 47 drR~i~~ri~~L~~~L~Kv~~------------~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg 114 (741)
T PRK09866 47 SQPNIAERHAMLNNELRKISR------------LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPG 114 (741)
T ss_pred cHHHHHHHHHHHHHHHHHHhc------------cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCC
Confidence 445666666666654322221 23899999999999999999999999999998888888888776542
Q ss_pred ccchh---------------------------------------hcccccCCC---------------------------
Q 002437 410 ASEEQ---------------------------------------QRCERHPDG--------------------------- 423 (921)
Q Consensus 410 ~~~~~---------------------------------------~~~~~~~~g--------------------------- 423 (921)
..... .......+|
T Consensus 115 ~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~ 194 (741)
T PRK09866 115 QKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLA 194 (741)
T ss_pred cCceeeecCCccchHHHHHHhhHHHHHhhhhHHHHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHH
Confidence 11100 000000000
Q ss_pred ----------eE----------Ee----ecCCCcccccEEEeCCCCChhhhH-HHHHHHHhcCCCCEEEEEEeCCCCCCH
Q 002437 424 ----------QY----------IC----YLPSPILKEMIIVDTPGTNVILQR-QQRLTEEFVPRADLVLFVISADRPLTE 478 (921)
Q Consensus 424 ----------~~----------~~----~~p~~~l~~l~lvDTPG~~~~~~~-~~~~~~~~l~~aD~il~V~da~~~~t~ 478 (921)
.| +- ..+.....+++||||||++..... ....+.+.+.++|+||||+|+.+..+.
T Consensus 195 ~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~ 274 (741)
T PRK09866 195 KALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSI 274 (741)
T ss_pred HhhcCCCcHHHHhhhhcCceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCCh
Confidence 00 00 112233467999999999865333 455566789999999999999988888
Q ss_pred HHHHHHHHhhhcCC--eEEEEEeCCCCCCCh-HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhc-----cc--c
Q 002437 479 SEVVFLRYTQQWKK--KVVFVLNKSDLYQNA-FELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKL-----SV--S 548 (921)
Q Consensus 479 ~e~~~l~~l~~~~~--~vivVlNK~D~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~-----~~--~ 548 (921)
.+..+++.++..++ |+|+|+||+|....+ ++.+.+...+...+... ......||||||+.+.+... .. .
T Consensus 275 ~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~-~i~f~eIfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 275 SDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKG-CITPQQIFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred hHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhc-CCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 99999999988775 999999999987432 23455555555443332 22456899999999765432 00 0
Q ss_pred -ccc--------------ccCccc---------ccccCccccccchHHHHHHHHHhhccCCccchHHHHHhhcCHHHHHH
Q 002437 549 -SAV--------------GKDHSE---------LSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAE 604 (921)
Q Consensus 549 -~~~--------------~~~~~~---------~~~~~~~~~~sg~~~L~~~l~~~l~~~~~~~~e~~~~kl~~~~~~~~ 604 (921)
++. +..+.+ ....+.+|++|||+.+.+.+.+.+. ..+....+.+....+.
T Consensus 354 l~~~~~~~wv~dfa~~~~gr~w~e~d~~d~e~l~~~A~~lwedS~~~~~i~~~i~~~~------~~a~~~al~sa~~kl~ 427 (741)
T PRK09866 354 LPPPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQLWEDSLFAQPIQALLHAAY------ANASLYALRSAAHKLL 427 (741)
T ss_pred CCchhhhHHHHHHHHHHhccccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHH------HhhHHHHHHHHHHHHH
Confidence 000 111100 1123368999999999999998888 4455556777778888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002437 605 RLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTLSLIDSTKSRVVKLIEST 671 (921)
Q Consensus 605 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~~~l~~~ 671 (921)
+..+.+++.+.-....+....+.++..+..++...+.++.+.......+...++.....+..++...
T Consensus 428 ~~a~~~~d~l~~r~~gl~~~~~~L~~~I~~~e~d~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (741)
T PRK09866 428 NYAQQAREYLDFRAHGLNVACEQLRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQ 494 (741)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777787888888888888888888877777777777777777777777776664
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=241.71 Aligned_cols=173 Identities=21% Similarity=0.256 Sum_probs=151.7
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEecCcHHHHHhCCCCeEEcC
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNASGVLLS 165 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~ivnd~~dla~~~~a~GvHL~ 165 (921)
+.+|+|||+......+...++ ++++|+.+||||+|+++..++.+++..+.+.|..+..++|||++++|..+++|||||+
T Consensus 2 ~~l~~it~~~~~~~~~~~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~~~~~gvHl~ 80 (201)
T PRK07695 2 NELHVISNGHQSFEELVAVAM-QIHSEVDYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIALLLNIHRVQLG 80 (201)
T ss_pred cEEEEEECCccccchHHHHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHHcCCCEEEeC
Confidence 589999998766556666665 8999999999999999999999999999998876668999999999999999999999
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----Ccc-hhhhhhcCCCC
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----DVI-ENSLFTNVKIP 237 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g~~-~~~~~~~~~~P 237 (921)
+.+++...+|+.. |+ . +||+|||+.+++.+| .+.|+||+++||+ |.+++ |+. .+++++.+++|
T Consensus 81 ~~~~~~~~~r~~~----~~-~---~ig~s~~s~e~a~~a-~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ip 151 (201)
T PRK07695 81 YRSFSVRSVREKF----PY-L---HVGYSVHSLEEAIQA-EKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIP 151 (201)
T ss_pred cccCCHHHHHHhC----CC-C---EEEEeCCCHHHHHHH-HHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCC
Confidence 9999998999876 55 3 699999999999999 8999999999998 43322 333 47778888999
Q ss_pred EEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 238 IFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 238 v~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|+|+|||+++|+.++.++|++||+++++.++
T Consensus 152 via~GGI~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 152 VIAIGGITPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 9999999999999999999999998888875
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=283.74 Aligned_cols=176 Identities=19% Similarity=0.228 Sum_probs=154.2
Q ss_pred ceEEEEcCCCCCC--CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 86 VVLQLEPHQVLAG--GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 86 ~~lylit~~~~~~--~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
.++|+|||+..+. ..+++.+++++++|+++||||+|++++.++..+++++.++|+. |++|||||++|+|.++|+| |
T Consensus 4 ~~ly~It~~~~~~~~~~~~~~l~~~l~~g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~~~~~liind~~~la~~~~~d-V 82 (755)
T PRK09517 4 FSLYLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVNDRLDVAVELGLH-V 82 (755)
T ss_pred eEEEEEECCccccCcccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC-e
Confidence 4699999986543 3688999999999999999999999999999999999999999 9999999999999999999 9
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHccc---ccC---CCCEEEeCCC----CCCC----CCcc-h
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNAS---SSE---GADFLVCCFG----EGQK----ADVI-E 227 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~---~~~---gaDyv~~gpv----Tk~~----~g~~-~ 227 (921)
|||+.|++...+|+.++ ++ . +||+|||+.+|+..|. ... ||||+++||| ||+. .|++ .
T Consensus 83 Hlg~~dl~~~~~r~~~~---~~-~---~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l 155 (755)
T PRK09517 83 HIGQGDTPYTQARRLLP---AH-L---ELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGI 155 (755)
T ss_pred ecCCCcCCHHHHHHhcC---CC-C---EEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHH
Confidence 99999999999999986 55 3 7999999999986530 122 4999999999 5542 2444 5
Q ss_pred hhhhhcCC---CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 228 NSLFTNVK---IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~~---~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+++++.++ +||||||||+++|+.+++++||+|||++++.++.
T Consensus 156 ~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 156 AEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred HHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCC
Confidence 78888777 9999999999999999999999999999998864
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=219.18 Aligned_cols=176 Identities=24% Similarity=0.306 Sum_probs=153.8
Q ss_pred CCCceEEEEcCCCCCC-CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCC
Q 002437 83 VPNVVLQLEPHQVLAG-GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNAS 160 (921)
Q Consensus 83 l~~~~lylit~~~~~~-~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~ 160 (921)
+| ++|+|||+..+. ..+.+.++.++++|+++||||.++.+..++...++++.++|+. ++.+++|+++++|.++|+|
T Consensus 6 ~~--~~~~it~~~~~~~~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad 83 (212)
T PRK00043 6 LL--RLYLITDSRDDSGRDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVNDRVDLALAVGAD 83 (212)
T ss_pred CC--CEEEEECCcccccccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC
Confidence 56 899999986543 3688999999999999999999999999999999999999998 9999999999999999999
Q ss_pred eEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--CCC----CCcc-hhhhh
Q 002437 161 GVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E--GQK----ADVI-ENSLF 231 (921)
Q Consensus 161 GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T--k~~----~g~~-~~~~~ 231 (921)
|||+++.+.+...+++..+ +. . ++|+||||.+++.+| ...|+|||++||+ | |+. .|+. ..+++
T Consensus 84 ~vh~~~~~~~~~~~~~~~~---~~-~---~~g~~~~t~~e~~~a-~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~ 155 (212)
T PRK00043 84 GVHLGQDDLPVADARALLG---PD-A---IIGLSTHTLEEAAAA-LAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIR 155 (212)
T ss_pred EEecCcccCCHHHHHHHcC---CC-C---EEEEeCCCHHHHHHH-hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHH
Confidence 9999999888888888764 34 2 799999999999999 7999999999998 3 332 2344 57777
Q ss_pred hcCC-CCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 232 TNVK-IPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 232 ~~~~-~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+..+ +||+|+|||+++|+.++.++||+||++.++.++
T Consensus 156 ~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 156 AAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred HhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhc
Confidence 7777 999999999999999999999999998887654
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-22 Score=203.80 Aligned_cols=174 Identities=25% Similarity=0.372 Sum_probs=151.7
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCC
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSD 166 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~ 166 (921)
+|+|||+..+..++.+.+++++++|++.||||.++.+..++.+.+..+.+.|.. |+.+++|+++++|.++|+||+|++.
T Consensus 1 l~~it~~~~~~~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~~vh~~~ 80 (196)
T cd00564 1 LYLITDRRLDGEDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIINDRVDLALAVGADGVHLGQ 80 (196)
T ss_pred CEEEeCCccccchHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecCc
Confidence 699999977656888999999999999999999999999999999999999988 8999999999999999999999999
Q ss_pred CCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC------Ccc-hhhhhhcCCCC
Q 002437 167 QGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA------DVI-ENSLFTNVKIP 237 (921)
Q Consensus 167 ~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~------g~~-~~~~~~~~~~P 237 (921)
.+.+...+++..+ .. . ++|+|||+.+++.+| ...|+||+++||+ |..++ ++. ..++++..++|
T Consensus 81 ~~~~~~~~~~~~~---~~-~---~~g~~~~t~~~~~~~-~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 152 (196)
T cd00564 81 DDLPVAEARALLG---PD-L---IIGVSTHSLEEALRA-EELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIP 152 (196)
T ss_pred ccCCHHHHHHHcC---CC-C---EEEeeCCCHHHHHHH-hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCC
Confidence 8888788888763 23 2 799999999999999 7899999999998 33322 233 46677778899
Q ss_pred EEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 238 IFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 238 v~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|+|+|||+++|+.++.++|++||++.++.+..
T Consensus 153 v~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 153 VVAIGGITPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEehHhhcC
Confidence 99999999999999999999999988877653
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-22 Score=199.14 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=140.4
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHh
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNT 177 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~ 177 (921)
.+..+.+++++++|+++||||.|+.+..++++.++++.+.|.. ...+++||++|+|.++||||||.|.-+.+...++..
T Consensus 24 ~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~~~~~~~~~~ 103 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVDPELIEAAVA 103 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCCHHHHHHHHH
Confidence 4778999999999999999999999999999999999999966 678999999999999999999999888877777776
Q ss_pred cccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHHHHHc
Q 002437 178 MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSKFLKS 255 (921)
Q Consensus 178 ~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~ 255 (921)
.+ .. . ++| |||++|+.+| .+.|+||+.+=| |++..|+. .+.++... ++|++|+|||+++|+.+++++
T Consensus 104 ~~---~~-~---i~G--~~t~~e~~~A-~~~Gadyv~~Fp-t~~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~a 172 (187)
T PRK07455 104 QD---IP-I---IPG--ALTPTEIVTA-WQAGASCVKVFP-VQAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQA 172 (187)
T ss_pred cC---CC-E---EcC--cCCHHHHHHH-HHCCCCEEEECc-CCcccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHC
Confidence 64 44 2 678 9999999999 899999999933 65556777 68888888 599999999999999999999
Q ss_pred CCcEEEEeecccc
Q 002437 256 GASGFVISLEDLS 268 (921)
Q Consensus 256 Ga~gva~~~a~~~ 268 (921)
|+.|||++++.++
T Consensus 173 Ga~~vav~s~i~~ 185 (187)
T PRK07455 173 GAIAVGLSGQLFP 185 (187)
T ss_pred CCeEEEEehhccc
Confidence 9999999988765
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=201.61 Aligned_cols=313 Identities=20% Similarity=0.192 Sum_probs=215.4
Q ss_pred CHHHHHcccccCCCCEEEeCCC----CCCCC----Ccc-h---hhhhhcCCCCEEEE-cCCCccChHHHHH-cCCcEEEE
Q 002437 197 TLDAAFNASSSEGADFLVCCFG----EGQKA----DVI-E---NSLFTNVKIPIFIM-NASPLVDVSKFLK-SGASGFVI 262 (921)
Q Consensus 197 ~~~e~~~A~~~~gaDyv~~gpv----Tk~~~----g~~-~---~~~~~~~~~Pv~ai-GGi~~~~~~~~~~-~Ga~gva~ 262 (921)
+.+|+..- ...|+|=+++-+ .+++| |-+ . .+..+....-++.. +=++|.....+.+ .|+.=|
T Consensus 21 ~leEl~~L--a~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q~~NLe~~l~~kVI-- 96 (411)
T COG2262 21 SLEELAEL--AETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQLRNLEKELGVKVI-- 96 (411)
T ss_pred hHHHHHHH--HHHcCCeEeeeEEEeccCCCcceecCcchHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHCCEEE--
Confidence 55665543 234566666655 33333 333 2 44455555555554 3456654443332 244333
Q ss_pred eecccccchHHHHHhhhccc-CCCccc-ccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHH
Q 002437 263 SLEDLSLFNDGVLSQMFCAN-GTTNEK-TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDV 340 (921)
Q Consensus 263 ~~a~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 340 (921)
-=.. ++=..|... .+...+ |++++++.+...+.... +...++..+++++.|+++..+|.+++.+.+.+..
T Consensus 97 --DRt~-----LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~-~~~l~~~GggiG~rGpGE~~lE~drR~ir~rI~~ 168 (411)
T COG2262 97 --DRTQ-----LILDIFAQRARSREGKLQVELAQLRYELPRLVGS-GSHLSRLGGGIGFRGPGETQLETDRRRIRRRIAK 168 (411)
T ss_pred --ehHh-----HHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhh-hhhcccccCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 1111 111223222 223333 99999999998886663 3344466789999999999999999999999999
Q ss_pred HHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhccccc
Q 002437 341 IKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH 420 (921)
Q Consensus 341 l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~ 420 (921)
+++.+..++..+...+..+.....+.|+++|.||||||||+|+|++......+..++|-+++.-... .
T Consensus 169 i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~------------l 236 (411)
T COG2262 169 LKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIE------------L 236 (411)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEE------------e
Confidence 9999888888888777777777899999999999999999999999998888888887766553322 2
Q ss_pred CCCeEEeecCCCcccccEEEeCCCCChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH----HHHHhhhcCC
Q 002437 421 PDGQYICYLPSPILKEMIIVDTPGTNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVV----FLRYTQQWKK 492 (921)
Q Consensus 421 ~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~----~l~~l~~~~~ 492 (921)
++| +.+.+.||-|+-...+ .-+..|.+....||++++|+|+++|......+ +|..+....+
T Consensus 237 ~~g-----------~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~ 305 (411)
T COG2262 237 GDG-----------RKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEI 305 (411)
T ss_pred CCC-----------ceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCC
Confidence 222 3589999999954433 23566888889999999999999986554443 5566655678
Q ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHH
Q 002437 493 KVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDK 572 (921)
Q Consensus 493 ~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~ 572 (921)
|+|+|+||+|+..+.. ....+.. ..+..+++||+++ .|++.
T Consensus 306 p~i~v~NKiD~~~~~~----~~~~~~~--------~~~~~v~iSA~~~---------------------------~gl~~ 346 (411)
T COG2262 306 PIILVLNKIDLLEDEE----ILAELER--------GSPNPVFISAKTG---------------------------EGLDL 346 (411)
T ss_pred CEEEEEecccccCchh----hhhhhhh--------cCCCeEEEEeccC---------------------------cCHHH
Confidence 9999999999986632 1111111 1136899999987 78999
Q ss_pred HHHHHHHhhcc
Q 002437 573 LEKLLYSFLDG 583 (921)
Q Consensus 573 L~~~l~~~l~~ 583 (921)
|.+.|.+.+..
T Consensus 347 L~~~i~~~l~~ 357 (411)
T COG2262 347 LRERIIELLSG 357 (411)
T ss_pred HHHHHHHHhhh
Confidence 99999988874
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=204.40 Aligned_cols=227 Identities=24% Similarity=0.212 Sum_probs=160.8
Q ss_pred ccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEE
Q 002437 289 TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLV 368 (921)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 368 (921)
+++++++.+.-...... +...+++.+++++.+++++.++.+++.+.+.+..+++.+..+...+...+..+..+..++|+
T Consensus 115 qv~la~l~~~l~r~~~~-~~~l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~Va 193 (351)
T TIGR03156 115 QVELAQLKYLLPRLVGG-WTHLSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVA 193 (351)
T ss_pred HHHHHhccchhhhhhhh-HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEE
Confidence 78888887766554332 22367888899998888877788899999999999987666666555555544445679999
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
++|.+|+|||||+|+|++.+....+..++|.+++..... .++| ..+.|+||||+...
T Consensus 194 lvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~------------~~~~-----------~~i~l~DT~G~~~~ 250 (351)
T TIGR03156 194 LVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLD------------LPDG-----------GEVLLTDTVGFIRD 250 (351)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEE------------eCCC-----------ceEEEEecCccccc
Confidence 999999999999999999986666666677665443221 1111 24899999998321
Q ss_pred -----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH----HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 449 -----LQRQQRLTEEFVPRADLVLFVISADRPLTESEV----VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 449 -----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~----~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.+. ...+.+.+..||++|+|+|++++.+..+. .++..+...++|+++|+||+|+... .+.. ...
T Consensus 251 l~~~lie~-f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-~~v~----~~~- 323 (351)
T TIGR03156 251 LPHELVAA-FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-PRIE----RLE- 323 (351)
T ss_pred CCHHHHHH-HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-HhHH----HHH-
Confidence 122 23355678999999999999988766554 3444444446899999999999743 2211 110
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
. ...+++++||+++ .|+++|.+.|.+.
T Consensus 324 ------~-~~~~~i~iSAktg---------------------------~GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 ------E-GYPEAVFVSAKTG---------------------------EGLDLLLEAIAER 350 (351)
T ss_pred ------h-CCCCEEEEEccCC---------------------------CCHHHHHHHHHhh
Confidence 1 1246899999987 6888888887654
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=186.16 Aligned_cols=166 Identities=27% Similarity=0.366 Sum_probs=127.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEE-EEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.|+++|+||+|||||+|+|+|.++..++..|.|..... .-+... + .++++|||||
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~------------~------------~QiIfvDTPG 63 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD------------N------------AQIIFVDTPG 63 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC------------C------------ceEEEEeCCC
Confidence 68999999999999999999999998877775543222 212211 1 2599999999
Q ss_pred CChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
++.. ...+.+.+...+.++|+|+||+|++++....+...+..++..+.|+++++||+|...++..+....+....
T Consensus 64 ih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~- 142 (298)
T COG1159 64 IHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKK- 142 (298)
T ss_pred CCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHh-
Confidence 9643 34456667778899999999999999999988889999998778999999999999775433333333332
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCCccc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTG 588 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~~~~ 588 (921)
.. +...++++||+.+ .+.+.|.+.+.+.+.+..-..
T Consensus 143 ---~~--~f~~ivpiSA~~g---------------------------~n~~~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 143 ---LL--PFKEIVPISALKG---------------------------DNVDTLLEIIKEYLPEGPWYY 178 (298)
T ss_pred ---hC--CcceEEEeecccc---------------------------CCHHHHHHHHHHhCCCCCCcC
Confidence 22 3458999999988 788899999999888755443
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-19 Score=199.94 Aligned_cols=232 Identities=19% Similarity=0.136 Sum_probs=164.4
Q ss_pred ccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEE
Q 002437 289 TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLV 368 (921)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 368 (921)
|++++++.+.-.+... .+.+.++..+.+++.|+++..+|.+++.+.+.+..+++.+..+...+...+..+.....+.|+
T Consensus 123 qvelA~l~y~~prl~~-~~~~l~~~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~Va 201 (426)
T PRK11058 123 QVELAQLRHLATRLVR-GWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVS 201 (426)
T ss_pred HHHHHhhhhhhhhhhc-cccchhhhcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEE
Confidence 8999999998887644 345677788889999999999999999999999999987666654444333333334567999
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
++|.+|+|||||+|+|++.++...+..++|.+++.....- +++ ..+.++||||+...
T Consensus 202 lVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l------------~~~-----------~~~~l~DTaG~~r~ 258 (426)
T PRK11058 202 LVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV------------ADV-----------GETVLADTVGFIRH 258 (426)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe------------CCC-----------CeEEEEecCccccc
Confidence 9999999999999999998876556666666554322110 011 14789999998432
Q ss_pred hh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH----HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 449 LQ----RQQRLTEEFVPRADLVLFVISADRPLTESEV----VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 449 ~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~----~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
.+ +....+.+.+..||++|+|+|++++.+..+. .++..+...+.|+++|+||+|+...... .. . .
T Consensus 259 lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~-~---~- 331 (426)
T PRK11058 259 LPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RI-D---R- 331 (426)
T ss_pred CCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HH-H---H-
Confidence 11 1123355667999999999999988766654 3455555557899999999999743111 11 1 0
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .+ .+.++++||+++ .|++.|.+.+.+.+.
T Consensus 332 -~~-~~--~~~~v~ISAktG---------------------------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 332 -DE-EN--KPIRVWLSAQTG---------------------------AGIPLLFQALTERLS 362 (426)
T ss_pred -Hh-cC--CCceEEEeCCCC---------------------------CCHHHHHHHHHHHhh
Confidence 01 11 123588999987 689999988888765
|
|
| >PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-20 Score=180.25 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHH--HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002437 787 REVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLA--LGLCSAGGYIAVANFPARRQRVIEKVNKIADGLAREIEEAMQ-- 862 (921)
Q Consensus 787 ~~~~~~t~~~~g~~g~~a~~~~~i~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~~~k~r~~~~~~~~~~~~~l~-- 862 (921)
++++.....+++.+...++|++.+++|++|+++| +++++++.|+++|.|||.+|+.++|+|.+++||++|+.++|+
T Consensus 12 e~~~~~~~~~~as~~S~~s~g~liv~gvv~rtvGWrvIa~~~~~Yg~lYlYERLtWT~~AKER~fK~Qfv~hAt~KLr~i 91 (171)
T PF04799_consen 12 EEMMLSMVTGLASVTSRGSMGVLIVGGVVWRTVGWRVIAVSGSLYGGLYLYERLTWTNKAKERAFKRQFVDHATEKLRLI 91 (171)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777778888888888899999999999999 999999999999999999999999999999999999999999
Q ss_pred ---------HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002437 863 ---------KDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQNLH 919 (921)
Q Consensus 863 ---------~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~ 919 (921)
+|+++||..+|++||..++..+++++.|+++|++.++.|+.++++++.|||++++|+
T Consensus 92 v~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~ 157 (171)
T PF04799_consen 92 VSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLE 157 (171)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999875
|
Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-20 Score=177.93 Aligned_cols=142 Identities=27% Similarity=0.329 Sum_probs=103.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+++|.||+|||||+|+|+|.+....++..+|.......+...+ ..+.+|||||
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~------------------------~~~~lvDlPG 56 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD------------------------QQVELVDLPG 56 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT------------------------EEEEEEE---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC------------------------ceEEEEECCC
Confidence 3699999999999999999999997777777788776654443211 2489999999
Q ss_pred CChhh--hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVIL--QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~--~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+++.. ...+.++.+++ .+.|++++|+|+++ .+.+++++.++.+.+.|+++|+||+|......- ..-.+.
T Consensus 57 ~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~-----~id~~~ 129 (156)
T PF02421_consen 57 IYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGI-----EIDAEK 129 (156)
T ss_dssp -SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTE-----EE-HHH
T ss_pred cccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCC-----EECHHH
Confidence 97653 34567777887 79999999999986 367788999999999999999999997643110 001223
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.++ +||+++||+.+
T Consensus 130 Ls~~Lg---~pvi~~sa~~~ 146 (156)
T PF02421_consen 130 LSERLG---VPVIPVSARTG 146 (156)
T ss_dssp HHHHHT---S-EEEEBTTTT
T ss_pred HHHHhC---CCEEEEEeCCC
Confidence 333443 78999999987
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=180.30 Aligned_cols=258 Identities=22% Similarity=0.277 Sum_probs=174.0
Q ss_pred HHHHcccccCCCCEEEeCCCCCCCCCcc-----hhhhhhcCCCCEEEE----cCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 199 DAAFNASSSEGADFLVCCFGEGQKADVI-----ENSLFTNVKIPIFIM----NASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 199 ~e~~~A~~~~gaDyv~~gpvTk~~~g~~-----~~~~~~~~~~Pv~ai----GGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+++..| -..||.++| |.....|+. ...+....+.||+.. -+.. .++..+....|+.-+..++|...
T Consensus 75 ~Qa~~A--i~eADvilf--vVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 75 EQALIA--IEEADVILF--VVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HHHHHH--HHhCCEEEE--EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhc
Confidence 344444 355899888 532333333 233333667998774 2333 44577889999998888888776
Q ss_pred cchHHHHHhhhcccCCCcccccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccH
Q 002437 269 LFNDGVLSQMFCANGTTNEKTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLM 348 (921)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~ 348 (921)
-=.+++++.+..... -. .......+
T Consensus 151 ~Gi~dLld~v~~~l~-~~------------------------------e~~~~~~~------------------------ 175 (444)
T COG1160 151 RGIGDLLDAVLELLP-PD------------------------------EEEEEEEE------------------------ 175 (444)
T ss_pred cCHHHHHHHHHhhcC-Cc------------------------------cccccccc------------------------
Confidence 655555554411100 00 00000000
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEe
Q 002437 349 EEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYIC 427 (921)
Q Consensus 349 ~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 427 (921)
..+.+|+|+|.||+|||||+|+|+|++-..+ ....||.+.....+...+
T Consensus 176 -------------~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~----------------- 225 (444)
T COG1160 176 -------------TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG----------------- 225 (444)
T ss_pred -------------CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-----------------
Confidence 3679999999999999999999999975544 445577766555443221
Q ss_pred ecCCCcccccEEEeCCCCCh---hhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeC
Q 002437 428 YLPSPILKEMIIVDTPGTNV---ILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNK 500 (921)
Q Consensus 428 ~~p~~~l~~l~lvDTPG~~~---~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK 500 (921)
+.+.+|||.|+-- +.+ -...-+...+..+|++++|+|+..++++++..+...+.+.++++++|+||
T Consensus 226 -------~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNK 298 (444)
T COG1160 226 -------RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNK 298 (444)
T ss_pred -------eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEc
Confidence 3589999999831 111 11223667789999999999999999999999999999999999999999
Q ss_pred CCCCCCh-HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 501 SDLYQNA-FELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 501 ~D~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
||+.... ..+++..+.++..+.. ....+++++||+.+ .|+..+.+.+.+
T Consensus 299 WDl~~~~~~~~~~~k~~i~~~l~~---l~~a~i~~iSA~~~---------------------------~~i~~l~~~i~~ 348 (444)
T COG1160 299 WDLVEEDEATMEEFKKKLRRKLPF---LDFAPIVFISALTG---------------------------QGLDKLFEAIKE 348 (444)
T ss_pred cccCCchhhHHHHHHHHHHHHhcc---ccCCeEEEEEecCC---------------------------CChHHHHHHHHH
Confidence 9998752 3455555555554332 25689999999987 678888887776
Q ss_pred hhc
Q 002437 580 FLD 582 (921)
Q Consensus 580 ~l~ 582 (921)
...
T Consensus 349 ~~~ 351 (444)
T COG1160 349 IYE 351 (444)
T ss_pred HHH
Confidence 644
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-17 Score=179.30 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=141.9
Q ss_pred hhhccccCCCch--HHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 311 ERVAGFVKFEDR--EKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 311 ~~~~~~~~~~~~--~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+.++..+||.+. .....+.....+....+.+++ +....+..+.+.+.++++++|.||+|||||+|+|++++
T Consensus 169 a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~-------ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d 241 (454)
T COG0486 169 AQVEANIDFPEEDIEELVLEKIREKLEELIAELDE-------LLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRD 241 (454)
T ss_pred HHheEeCCCCcccccchhHHHHHHHHHHHHHHHHH-------HHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCC
Confidence 456677777665 112222233333333333333 22233344456688999999999999999999999997
Q ss_pred CCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh----hhHHHHHHHHhcCCC
Q 002437 389 YLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI----LQRQQRLTEEFVPRA 463 (921)
Q Consensus 389 ~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~----~~~~~~~~~~~l~~a 463 (921)
... ++...||+++....+.-. |. .+.|+||.|+-.. ....-+...+.+..|
T Consensus 242 ~AIVTdI~GTTRDviee~i~i~-------------G~-----------pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~A 297 (454)
T COG0486 242 RAIVTDIAGTTRDVIEEDINLN-------------GI-----------PVRLVDTAGIRETDDVVERIGIERAKKAIEEA 297 (454)
T ss_pred ceEecCCCCCccceEEEEEEEC-------------CE-----------EEEEEecCCcccCccHHHHHHHHHHHHHHHhC
Confidence 664 667778888766544322 21 4899999999422 222345577788999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHh
Q 002437 464 DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEA 543 (921)
Q Consensus 464 D~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a 543 (921)
|+|+||+|++.+.+..+..++. ....++|+++|+||.|+..... .... . -....+++.+|++++
T Consensus 298 DlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~-~~~~---------~--~~~~~~~i~iSa~t~--- 361 (454)
T COG0486 298 DLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE-LESE---------K--LANGDAIISISAKTG--- 361 (454)
T ss_pred CEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc-cchh---------h--ccCCCceEEEEecCc---
Confidence 9999999999988888888877 5566799999999999986532 1110 0 112457999999987
Q ss_pred hcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 544 KLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.|++.|++.|.+++...
T Consensus 362 ------------------------~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 ------------------------EGLDALREAIKQLFGKG 378 (454)
T ss_pred ------------------------cCHHHHHHHHHHHHhhc
Confidence 79999999999887753
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=181.16 Aligned_cols=174 Identities=11% Similarity=0.028 Sum_probs=137.6
Q ss_pred EEEEcCCCCCCC--chHHHHHHHHhcCCcEEEEeCCCC--CHHHHH--HHHHHHHHHhhc--CceEEe---cCcHHHHHh
Q 002437 88 LQLEPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGEA--SGKSVY--EAACLLKSVVKD--RALFLI---AERVDIAAA 156 (921)
Q Consensus 88 lylit~~~~~~~--~~~~~~~~~l~~g~~~vqlR~k~~--~~~~~~--~~a~~l~~~~~~--~~~~iv---nd~~dla~~ 156 (921)
-|+|+|...+.+ .+.+.+++++++|+++||||.++. .+...+ +.++.++++|+. ++.|++ ||+++++.+
T Consensus 7 ~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~ 86 (229)
T PLN02334 7 DAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAK 86 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHH
Confidence 467888765444 778899999999999999999988 444444 689999999865 789999 799999999
Q ss_pred CCCCeE--EcCC--CCCCHHHHHHhcccCCCCccccCeEEEecC--CHHHHHcccccCC--CCEEEeCCC----CCCCC-
Q 002437 157 VNASGV--LLSD--QGLPAIVARNTMKDSMSESVVLPLVGRNVQ--TLDAAFNASSSEG--ADFLVCCFG----EGQKA- 223 (921)
Q Consensus 157 ~~a~Gv--HL~~--~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h--~~~e~~~A~~~~g--aDyv~~gpv----Tk~~~- 223 (921)
+||||| |++| .+.+...+|...+ ++ . .+|.||| ++.+..++ ...+ +||+++||+ |+...
T Consensus 87 ~gad~v~vH~~q~~~d~~~~~~~~i~~---~g-~---~iGls~~~~t~~~~~~~-~~~~~~~Dyi~~~~v~pg~~~~~~~ 158 (229)
T PLN02334 87 AGASIFTFHIEQASTIHLHRLIQQIKS---AG-M---KAGVVLNPGTPVEAVEP-VVEKGLVDMVLVMSVEPGFGGQSFI 158 (229)
T ss_pred cCCCEEEEeeccccchhHHHHHHHHHH---CC-C---eEEEEECCCCCHHHHHH-HHhccCCCEEEEEEEecCCCccccC
Confidence 999999 9996 7778888888875 44 3 6899998 55554444 3344 999999999 33321
Q ss_pred --Ccc-hhhhhhc-CCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 224 --DVI-ENSLFTN-VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 224 --g~~-~~~~~~~-~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++. ..++++. .++|++|+|||+++|+.++.++|+++|++.++.++.
T Consensus 159 ~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 159 PSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 232 3556655 358999999999999999999999999999887763
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=167.91 Aligned_cols=193 Identities=27% Similarity=0.330 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEE
Q 002437 325 QLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFL 404 (921)
Q Consensus 325 ~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~ 404 (921)
+.++.+...+++.++.+++......+.+......+..+..++|+|+|.+|+|||||+|.|++..+.+.+...+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~ 81 (204)
T cd01878 2 TQLETDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR 81 (204)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE
Confidence 35677888888888888886655555554444444345668999999999999999999999875544443333322221
Q ss_pred EccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhh-----hHHHHHHHHhcCCCCEEEEEEeCCCCCCHH
Q 002437 405 RFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVIL-----QRQQRLTEEFVPRADLVLFVISADRPLTES 479 (921)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~-----~~~~~~~~~~l~~aD~il~V~da~~~~t~~ 479 (921)
.... .++ ..+.+|||||+.... ..... +...+..+|++++|+|++++.+..
T Consensus 82 ~~~~------------~~~-----------~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~~~~d~ii~v~D~~~~~~~~ 137 (204)
T cd01878 82 RLRL------------PDG-----------REVLLTDTVGFIRDLPHQLVEAFRS-TLEEVAEADLLLHVVDASDPDYEE 137 (204)
T ss_pred EEEe------------cCC-----------ceEEEeCCCccccCCCHHHHHHHHH-HHHHHhcCCeEEEEEECCCCChhh
Confidence 1100 000 148999999984321 11111 223467899999999999876655
Q ss_pred HH----HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCc
Q 002437 480 EV----VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDH 555 (921)
Q Consensus 480 e~----~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~ 555 (921)
+. +++..+...+.|+++|+||+|+.... ... ........+++++||+.+
T Consensus 138 ~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~-~~~-----------~~~~~~~~~~~~~Sa~~~--------------- 190 (204)
T cd01878 138 QIETVEKVLKELGAEDIPMILVLNKIDLLDDE-ELE-----------ERLEAGRPDAVFISAKTG--------------- 190 (204)
T ss_pred HHHHHHHHHHHcCcCCCCEEEEEEccccCChH-HHH-----------HHhhcCCCceEEEEcCCC---------------
Confidence 43 33444444468999999999997542 111 111223568999999987
Q ss_pred ccccccCccccccchHHHHHHHHHh
Q 002437 556 SELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 556 ~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.|++++.+.|...
T Consensus 191 ------------~gi~~l~~~L~~~ 203 (204)
T cd01878 191 ------------EGLDELLEAIEEL 203 (204)
T ss_pred ------------CCHHHHHHHHHhh
Confidence 6888888777654
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.2e-17 Score=185.33 Aligned_cols=200 Identities=27% Similarity=0.342 Sum_probs=133.0
Q ss_pred hhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC
Q 002437 311 ERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL 390 (921)
Q Consensus 311 ~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~ 390 (921)
+.+++.+||.++. ..+..++.+.+.+..+++....+. .-.+..+.+...++|+++|.+|+|||||+|+|++.+..
T Consensus 167 a~iea~iDf~ee~--~~~~~~~~i~~~i~~l~~~l~~l~---~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a 241 (449)
T PRK05291 167 ALVEAAIDFPEED--IEFLSDEKILEKLEELIAELEALL---ASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERA 241 (449)
T ss_pred HHheEEccCCCCC--cccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 4566777876642 223444555555555555332222 22233344556789999999999999999999998764
Q ss_pred C-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhhhHH----HHHHHHhcCCCCE
Q 002437 391 K-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQ----QRLTEEFVPRADL 465 (921)
Q Consensus 391 ~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~----~~~~~~~l~~aD~ 465 (921)
. ....+||..+....+.. +| ..+.++||||+....... ...+..++..+|+
T Consensus 242 ~v~~~~gtT~d~~~~~i~~-------------~g-----------~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~ 297 (449)
T PRK05291 242 IVTDIAGTTRDVIEEHINL-------------DG-----------IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADL 297 (449)
T ss_pred ccCCCCCcccccEEEEEEE-------------CC-----------eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCE
Confidence 3 44445665443322211 11 148999999985432211 2335667899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhc
Q 002437 466 VLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKL 545 (921)
Q Consensus 466 il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~ 545 (921)
++||+|++++.+..+..++.. ..+.|+++|+||+|+.... ... .....+++++||+++
T Consensus 298 il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~-~~~--------------~~~~~~~i~iSAktg----- 355 (449)
T PRK05291 298 VLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEI-DLE--------------EENGKPVIRISAKTG----- 355 (449)
T ss_pred EEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccc-hhh--------------hccCCceEEEEeeCC-----
Confidence 999999998887777766655 4568999999999997542 111 112467999999987
Q ss_pred ccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 546 SVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.|+++|.+.+.+.+..
T Consensus 356 ----------------------~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 ----------------------EGIDELREAIKELAFG 371 (449)
T ss_pred ----------------------CCHHHHHHHHHHHHhh
Confidence 6899999999887753
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=179.85 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=118.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
+.|+++|.||+|||||+|.|+|++...+... .+|++..+....- .+ +.+.+|||+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-------------~~-----------~~f~lIDTg 59 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-------------LG-----------REFILIDTG 59 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-------------cC-----------ceEEEEECC
Confidence 7899999999999999999999987765544 4565543321110 00 359999999
Q ss_pred CCChh-----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVI-----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~-----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|+... .....+.+...+.+||++|||+|+..+.+..+.++.+.++..++|+|+|+||+|....++
T Consensus 60 Gl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~---------- 129 (444)
T COG1160 60 GLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE---------- 129 (444)
T ss_pred CCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh----------
Confidence 99632 344566677888999999999999999999999999999988899999999999773321
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...+++......++++||..+ .|+.+|.+.+.+.+
T Consensus 130 -~~~efyslG~g~~~~ISA~Hg---------------------------~Gi~dLld~v~~~l 164 (444)
T COG1160 130 -LAYEFYSLGFGEPVPISAEHG---------------------------RGIGDLLDAVLELL 164 (444)
T ss_pred -hHHHHHhcCCCCceEeehhhc---------------------------cCHHHHHHHHHhhc
Confidence 122333334567999999887 68888888888776
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-17 Score=166.57 Aligned_cols=135 Identities=38% Similarity=0.621 Sum_probs=103.6
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchh---------------------------hcccc
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQ---------------------------QRCER 419 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~---------------------------~~~~~ 419 (921)
|+|+|.+++|||||||+|+|.+++|.+..|+|..++.+.++....... .....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999999999999999999999875543110 00000
Q ss_pred -----cCCCeEEeecCCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhh-hcCCe
Q 002437 420 -----HPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ-QWKKK 493 (921)
Q Consensus 420 -----~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~-~~~~~ 493 (921)
...-........+...++.||||||+++....+..++.+++..+|++|||+++++..+..+..++.... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 000112334445566789999999998777777789999999999999999999999888888777654 46677
Q ss_pred EEEEEeCC
Q 002437 494 VVFVLNKS 501 (921)
Q Consensus 494 vivVlNK~ 501 (921)
+|+|+||+
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=172.46 Aligned_cols=161 Identities=24% Similarity=0.271 Sum_probs=110.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.|+++|.+|+|||||+|+|+|.++..++.. .||.......+.. ++ ..+.++||||
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-------------~~-----------~qii~vDTPG 57 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-------------GA-----------SQIIFIDTPG 57 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-------------CC-----------cEEEEEECcC
Confidence 589999999999999999999987654443 4555422111110 00 1489999999
Q ss_pred CChhh----hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVIL----QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~----~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+.... ......+..++..+|+++||+|+++..+.. ..++..+...+.|+++|+||+|+... +... .....
T Consensus 58 ~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~-~~~~---~~~~~- 131 (270)
T TIGR00436 58 FHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFK-DKLL---PLIDK- 131 (270)
T ss_pred CCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCH-HHHH---HHHHH-
Confidence 86432 122334567789999999999999876554 45666777788999999999999743 2222 22211
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCC
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSS 585 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~ 585 (921)
+..... ..+++++||+.+ .|+++|.+.+.+.+.+..
T Consensus 132 ~~~~~~--~~~v~~iSA~~g---------------------------~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 132 YAILED--FKDIVPISALTG---------------------------DNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred HHhhcC--CCceEEEecCCC---------------------------CCHHHHHHHHHHhCCCCC
Confidence 111112 237999999987 799999999998876533
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-16 Score=154.31 Aligned_cols=164 Identities=24% Similarity=0.368 Sum_probs=122.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC-CCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR-YLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~-~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..+-|+|+|++|+|||||||+|++.+ +..++..| .|..+..+.+.+ .+.+|
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---------------------------~~~lV 75 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---------------------------ELRLV 75 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---------------------------cEEEE
Confidence 56799999999999999999999976 45555554 677776665542 38899
Q ss_pred eCCCCChh------hhHHHHHHHHhcC---CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 441 DTPGTNVI------LQRQQRLTEEFVP---RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 441 DTPG~~~~------~~~~~~~~~~~l~---~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|.||++-. .+.+...+.+|+. .-.+++.++|+.++....+.++++.+...+.|+++|+||+|.+.. .+..
T Consensus 76 DlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~-~~~~ 154 (200)
T COG0218 76 DLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK-SERN 154 (200)
T ss_pred eCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh-hHHH
Confidence 99999622 3445667777773 356789999999999999999999999999999999999999965 3444
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.....+.+.+..... ....++.+|+... .|+++|.+.|.+.+.
T Consensus 155 k~l~~v~~~l~~~~~-~~~~~~~~ss~~k---------------------------~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 155 KQLNKVAEELKKPPP-DDQWVVLFSSLKK---------------------------KGIDELKAKILEWLK 197 (200)
T ss_pred HHHHHHHHHhcCCCC-ccceEEEEecccc---------------------------cCHHHHHHHHHHHhh
Confidence 444555544332221 2222777787664 689999998887765
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-16 Score=172.17 Aligned_cols=163 Identities=29% Similarity=0.406 Sum_probs=117.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
-.|+++|.+|+|||||+|+|+|.++...+..|.|........... ++ .+++++||||
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~------------~~-----------~qi~~iDTPG 62 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE------------DD-----------AQIIFVDTPG 62 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc------------CC-----------ceEEEEECCC
Confidence 468999999999999999999998876555554432211111000 00 2589999999
Q ss_pred CChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+..... .....+...+..+|+++||+|++++.+..+..++..+...+.|+++|+||+|+..+.+.+....+.+.+
T Consensus 63 ~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~- 141 (292)
T PRK00089 63 IHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE- 141 (292)
T ss_pred CCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh-
Confidence 865422 223445667799999999999998888888888888887788999999999998554444444443332
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.. ...+++++||+.+ .|++.|.+.+.+.+..
T Consensus 142 ---~~--~~~~i~~iSA~~~---------------------------~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 142 ---LM--DFAEIVPISALKG---------------------------DNVDELLDVIAKYLPE 172 (292)
T ss_pred ---hC--CCCeEEEecCCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 22 2468999999886 6899999999888764
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=161.50 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=127.3
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-Cce-------EEecCcHHHHHhCCCCeEEcCCCCC
Q 002437 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RAL-------FLIAERVDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 98 ~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~-------~ivnd~~dla~~~~a~GvHL~~~~l 169 (921)
.++..+.+++++++|++++|+|.++.+..+ .+..+|+. +.. ++.+++++.|.+.||+++|.++.+.
T Consensus 21 ~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~------~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~ 94 (206)
T PRK09140 21 PDEALAHVGALIEAGFRAIEIPLNSPDPFD------SIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDP 94 (206)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccHHH------HHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCH
Confidence 347889999999999999999998876554 45555554 433 8899999999999999999999998
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCCCc
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNASPL 246 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi~~ 246 (921)
+...++...| . .++.+||+++|+.+| .+.|+||+.+=|. ...|+. ...++... ++|++|+|||++
T Consensus 95 ~v~~~~~~~~------~---~~~~G~~t~~E~~~A-~~~Gad~vk~Fpa--~~~G~~~l~~l~~~~~~~ipvvaiGGI~~ 162 (206)
T PRK09140 95 EVIRRAVALG------M---VVMPGVATPTEAFAA-LRAGAQALKLFPA--SQLGPAGIKALRAVLPPDVPVFAVGGVTP 162 (206)
T ss_pred HHHHHHHHCC------C---cEEcccCCHHHHHHH-HHcCCCEEEECCC--CCCCHHHHHHHHhhcCCCCeEEEECCCCH
Confidence 8877777543 2 466679999999999 8999999998563 235655 57788777 499999999999
Q ss_pred cChHHHHHcCCcEEEEeecccc
Q 002437 247 VDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+|+.+++++|+++||++++.++
T Consensus 163 ~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 163 ENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHHHCCCeEEEEehHhcc
Confidence 9999999999999999988865
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=156.14 Aligned_cols=173 Identities=24% Similarity=0.316 Sum_probs=114.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
+++|+++|.+|+|||||+|+|+|......+..++. .. ...... . .+..+...++.+||||
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~---~~t~~~------------~----~~~~~~~~~l~l~Dtp 60 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VV---ETTMKR------------T----PYPHPKFPNVTLWDLP 60 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-cc---ccccCc------------e----eeecCCCCCceEEeCC
Confidence 46899999999999999999999654322222111 00 000000 0 0000112369999999
Q ss_pred CCChhhhHHHHHHHH-hcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChH--------HHHHHH
Q 002437 444 GTNVILQRQQRLTEE-FVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAF--------ELEEAI 514 (921)
Q Consensus 444 G~~~~~~~~~~~~~~-~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~--------~~~~v~ 514 (921)
|++............ .+..+|++++|.+ .+++..+..+++.++..++|+++|+||+|+..+.+ ..++++
T Consensus 61 G~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l 138 (197)
T cd04104 61 GIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVL 138 (197)
T ss_pred CCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHH
Confidence 997543222222222 2578999999854 45789999999999999999999999999965322 134556
Q ss_pred HHHHHHHHHhhC---CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 515 SFVKENTMKLLN---IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 515 ~~~~~~~~~~~~---~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+++.+...++ ...++||.+|+... ...+|+.|++.+...|.+
T Consensus 139 ~~i~~~~~~~~~~~~~~~p~v~~vS~~~~-------------------------~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 139 QEIRDNCLENLQEAGVSEPPVFLVSNFDP-------------------------SDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEeCCCh-------------------------hhcChHHHHHHHHHHhhH
Confidence 666666665553 45689999999742 025899999999888874
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=154.23 Aligned_cols=149 Identities=25% Similarity=0.366 Sum_probs=106.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCC-CCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRY-LKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
...++|+++|.+|+|||||+|+|++... ... ...++|..+..+.+. .++.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~l 68 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---------------------------DGFRL 68 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---------------------------CcEEE
Confidence 4678999999999999999999999863 222 222344443333221 14899
Q ss_pred EeCCCCChh------hhHHHHHHHHhcC---CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHH
Q 002437 440 VDTPGTNVI------LQRQQRLTEEFVP---RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 440 vDTPG~~~~------~~~~~~~~~~~l~---~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
|||||++.. ...+......++. .+|++++|+|++++.+..+..++..+...+.|+++|+||+|+.. +++.
T Consensus 69 iDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~ 147 (179)
T TIGR03598 69 VDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK-KSEL 147 (179)
T ss_pred EeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC-HHHH
Confidence 999998532 1233344445554 46899999999999999988888888888899999999999974 3455
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...+.+++.+... + ...++|++||+++
T Consensus 148 ~~~~~~i~~~l~~~-~-~~~~v~~~Sa~~g 175 (179)
T TIGR03598 148 NKQLKKIKKALKKD-A-DDPSVQLFSSLKK 175 (179)
T ss_pred HHHHHHHHHHHhhc-c-CCCceEEEECCCC
Confidence 55666666665543 1 2358999999987
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=168.86 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=124.1
Q ss_pred hHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcc
Q 002437 101 ALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMK 179 (921)
Q Consensus 101 ~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~ 179 (921)
-++.+++|+++|++.||+|.|+++.++.++.++++.++|+. |+.+ +++|.|+|+.+.+
T Consensus 86 ~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v------------eaE~ghlG~~d~~--------- 144 (281)
T PRK06806 86 TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV------------EAEIGRVGGSEDG--------- 144 (281)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE------------EEEeeeECCccCC---------
Confidence 35899999999999999999999999999999999999999 8873 7889999977743
Q ss_pred cCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe--CCC--CCC---CCCcc-hhhhhhcCCCCEEEEc--CCCccCh
Q 002437 180 DSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC--CFG--EGQ---KADVI-ENSLFTNVKIPIFIMN--ASPLVDV 249 (921)
Q Consensus 180 ~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~--gpv--Tk~---~~g~~-~~~~~~~~~~Pv~aiG--Gi~~~~~ 249 (921)
++ ++|.|||+++++.++....|+||+.+ ||+ |++ ..|++ ++++++.+++|++++| ||+++|+
T Consensus 145 ---~~-----~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~ 216 (281)
T PRK06806 145 ---SE-----DIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDF 216 (281)
T ss_pred ---cc-----cccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 12 46889999999999822469999999 998 553 23444 5889999999999999 9999999
Q ss_pred HHHHHcCCcEEEEeecccccchHHHHH
Q 002437 250 SKFLKSGASGFVISLEDLSLFNDGVLS 276 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~~~~~~~~~~ 276 (921)
.++.++|+.+|+++++....+.....+
T Consensus 217 ~~~i~~G~~kinv~T~i~~a~~~a~~~ 243 (281)
T PRK06806 217 KKCIQHGIRKINVATATFNSVITAVNN 243 (281)
T ss_pred HHHHHcCCcEEEEhHHHHHHHHHHHHH
Confidence 999999999999988887765544443
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=162.26 Aligned_cols=232 Identities=19% Similarity=0.209 Sum_probs=153.7
Q ss_pred cChHHHHHcCCcEEEEeecccccchHHHHHhhhcccCCCcccccccccccccccccCCCCcccchhhccccCCCchHHHH
Q 002437 247 VDVSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANGTTNEKTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQL 326 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (921)
+++..+.. .+-.+ ..+..|..++.+-+++. ++...+++.++..+..... ...++...+....+..+.
T Consensus 60 d~l~~iv~-~~P~i----d~LhpFY~eLidvl~d~----d~~k~sLs~v~~A~~~i~~----l~~eYi~~lk~a~~~~~~ 126 (346)
T COG1084 60 DRLDKIVE-RFPSL----DDLHPFYRELIDVLVDI----DHLKISLSAVSWASKIIEK----LAREYIRLLKAAKDPKEA 126 (346)
T ss_pred HHHHHHHH-hCCCc----cccChHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCChhHH
Confidence 44444443 45555 67778888888877654 2222333333333322111 113344444555555666
Q ss_pred HHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCC----CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE
Q 002437 327 IETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQID----EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT 402 (921)
Q Consensus 327 ~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~----~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~ 402 (921)
.+..|..+.+..+.+++..+.++.++.....+++++ +.++|+|.|.||+|||||++++++.+.-...+.+||..+.
T Consensus 127 ~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~ 206 (346)
T COG1084 127 NQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIH 206 (346)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccccee
Confidence 777778888888888877777777766666666553 6799999999999999999999999988889999999888
Q ss_pred EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCCh-hhhHHHHH----HHHhcCCCCEEEEEEeCCC--C
Q 002437 403 FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNV-ILQRQQRL----TEEFVPRADLVLFVISADR--P 475 (921)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~-~~~~~~~~----~~~~l~~aD~il~V~da~~--~ 475 (921)
+.++.... ..+.+|||||+-+ ..++...+ +...-.-.++|+|++|.+. +
T Consensus 207 vGhfe~~~------------------------~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cg 262 (346)
T COG1084 207 VGHFERGY------------------------LRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCG 262 (346)
T ss_pred EeeeecCC------------------------ceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccC
Confidence 77654322 1489999999842 22222222 2222245899999999874 3
Q ss_pred CC-HHHHHHHHHhhh-cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 476 LT-ESEVVFLRYTQQ-WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 476 ~t-~~e~~~l~~l~~-~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
.+ +.+..+++.++. .+.|+++|+||+|.... +.++++...
T Consensus 263 y~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~-e~~~~~~~~ 304 (346)
T COG1084 263 YSLEEQISLLEEIKELFKAPIVVVINKIDIADE-EKLEEIEAS 304 (346)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEecccccch-hHHHHHHHH
Confidence 33 445678888876 44699999999999843 444544443
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=155.36 Aligned_cols=183 Identities=26% Similarity=0.306 Sum_probs=120.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+++|+.++|||||+++|++................ .......+..+......+..... .....+.++++||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~ti~~~~~~~~-~~~~~~~i~~iDt 77 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNA---FLDKHPEERERGITIDLSFISFE-KNENNRKITLIDT 77 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHC---HHHSSHHHHHCTSSSSSEEEEEE-BTESSEEEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccc---cccccchhhhccccccccccccc-ccccccceeeccc
Confidence 3578999999999999999999965422111000000000 00000001111111111111111 0011135999999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||.. .+...+...+..+|++|+|+|+..+......+.+..+...+.|+++|+||+|+. ..++++..+.+...+.
T Consensus 78 PG~~----~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~--~~~~~~~~~~~~~~l~ 151 (188)
T PF00009_consen 78 PGHE----DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI--EKELEEIIEEIKEKLL 151 (188)
T ss_dssp SSSH----HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS--HHHHHHHHHHHHHHHH
T ss_pred cccc----ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch--hhhHHHHHHHHHHHhc
Confidence 9973 344456667899999999999999999999999999999999999999999998 5667777777776554
Q ss_pred HhhCCC---CCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 523 KLLNIE---NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 523 ~~~~~~---~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.++.. ..+|+++||..+ .|++.|.+.+.+.+.
T Consensus 152 ~~~~~~~~~~~~vi~~Sa~~g---------------------------~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 152 KEYGENGEEIVPVIPISALTG---------------------------DGIDELLEALVELLP 187 (188)
T ss_dssp HHTTSTTTSTEEEEEEBTTTT---------------------------BTHHHHHHHHHHHS-
T ss_pred cccccCccccceEEEEecCCC---------------------------CCHHHHHHHHHHhCc
Confidence 433332 479999999987 689999998887653
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=150.73 Aligned_cols=160 Identities=31% Similarity=0.434 Sum_probs=111.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|+|+|.++.+....+.+. ......+.. .+ ..+.++||
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~liDt 58 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-------------DD-----------AQIIFVDT 58 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-------------CC-----------eEEEEEEC
Confidence 578999999999999999999998765444333221 111110000 00 24889999
Q ss_pred CCCChhhhH----HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQR----QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~----~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+...... ........+..+|+++||+|+.++.+.....++..+...+.|+++|+||+|+....+...+....+.
T Consensus 59 pG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 138 (168)
T cd04163 59 PGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK 138 (168)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHH
Confidence 998644222 2234556679999999999999887777777778888778999999999999855444444444333
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
. .. ...+++++|++.+ .|++++.+.|.++
T Consensus 139 ~----~~--~~~~~~~~s~~~~---------------------------~~~~~l~~~l~~~ 167 (168)
T cd04163 139 E----LG--PFAEIFPISALKG---------------------------ENVDELLEEIVKY 167 (168)
T ss_pred h----cc--CCCceEEEEeccC---------------------------CChHHHHHHHHhh
Confidence 2 11 2468999999876 6888888888765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=148.89 Aligned_cols=147 Identities=27% Similarity=0.328 Sum_probs=90.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC--CCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY--LKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~--~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||+|+|++... .+....+ +|.......+. ++. ...+.+||
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~~~--~~~~~~~D 57 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD---------------------LPS--GKRLGFID 57 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEE---------------------ecC--CcEEEEEE
Confidence 4799999999999999999998532 1111111 22222111110 000 02589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.. ++...+..++..+|++++|+|+++.......+.+..+...+ +|+++|+||+|+... .......+.+.+.
T Consensus 58 tpG~~----~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~ 132 (164)
T cd04171 58 VPGHE----KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE-DWLELVEEEIREL 132 (164)
T ss_pred CCChH----HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH-HHHHHHHHHHHHH
Confidence 99973 33345566788999999999998754444444444444334 499999999999743 2223333333333
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... +....+++++||+.+
T Consensus 133 ~~~~-~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 133 LAGT-FLADAPIFPVSAVTG 151 (164)
T ss_pred HHhc-CcCCCcEEEEeCCCC
Confidence 3321 113578999999887
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=150.07 Aligned_cols=163 Identities=16% Similarity=0.219 Sum_probs=107.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|+|++.++.......+|............ .. ...+.+|||||
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~----------~~-----------~~~~~iiDtpG 59 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV----------LK-----------IPGITFIDTPG 59 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc----------CC-----------cceEEEEeCCC
Confidence 4699999999999999999998876543222233322211111100 00 12589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
.. .....+..++..+|++++|+|++++........+..+...+.|+++|+||+|+.... .+.+...+.......
T Consensus 60 ~~----~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~ 133 (168)
T cd01887 60 HE----AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN--PERVKNELSELGLQG 133 (168)
T ss_pred cH----HHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc--HHHHHHHHHHhhccc
Confidence 73 344456667789999999999998776666667777777889999999999987432 122222222211110
Q ss_pred h--CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 525 L--NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 525 ~--~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
. .....+++++|++.+ .|+.++.+++.+..
T Consensus 134 ~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~ 165 (168)
T cd01887 134 EDEWGGDVQIVPTSAKTG---------------------------EGIDDLLEAILLLA 165 (168)
T ss_pred cccccCcCcEEEeecccC---------------------------CCHHHHHHHHHHhh
Confidence 0 113468999999887 68888888887654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=150.88 Aligned_cols=150 Identities=29% Similarity=0.354 Sum_probs=101.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCc-cceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~t-T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+++|+++|.+|+|||||+|+|++......+..+. |.......+.. ++ .++.+|||
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~iiDt 57 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-------------DG-----------KKYTLIDT 57 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-------------CC-----------eeEEEEEC
Confidence 5789999999999999999999987554443332 22211111100 11 24789999
Q ss_pred CCCChhh------hHHH-HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHHHH
Q 002437 443 PGTNVIL------QRQQ-RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEEAI 514 (921)
Q Consensus 443 PG~~~~~------~~~~-~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~v~ 514 (921)
||++... +... ......+..+|++++|+|++++.+.....++..+...+.|+++|+||+|+.... ...+.+.
T Consensus 58 pG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~ 137 (174)
T cd01895 58 AGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFK 137 (174)
T ss_pred CCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHH
Confidence 9985431 1111 123345689999999999999988887777777777789999999999997542 2344444
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.+.+.. ....+++++||+.+
T Consensus 138 ~~~~~~~~~---~~~~~~~~~Sa~~~ 160 (174)
T cd01895 138 KEIRRKLPF---LDYAPIVFISALTG 160 (174)
T ss_pred HHHHhhccc---ccCCceEEEeccCC
Confidence 444443321 12468999999986
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=153.96 Aligned_cols=177 Identities=22% Similarity=0.192 Sum_probs=114.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+|+|.+|+|||||+|+|++...........+. ....... .................+. ...+.+|||||.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~liDtpG~ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE--TFLDVLK---EERERGITIKSGVATFEWP---DRRVNFIDTPGH 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec--ccccCCH---HHHHcCCCeecceEEEeeC---CEEEEEEeCCCc
Confidence 4899999999999999999988654322111110 0000000 0000000000011111110 135899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
. .+...+..++..+|++++|+|+..+......+++..+...+.|+++|+||+|+... ++.....+.+.+.+....
T Consensus 73 ~----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 73 E----DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGE-EDLEEVLREIKELLGLIG 147 (189)
T ss_pred H----HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcch-hcHHHHHHHHHHHHcccc
Confidence 4 33445677778999999999999888777777887777788999999999999853 444555555555544321
Q ss_pred ----------CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 526 ----------NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 526 ----------~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.....+++++||+.+ .|++++.+.+..++.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g---------------------------~gi~~l~~~l~~~l~ 187 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTG---------------------------IGVEELLEAIVEHLP 187 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccC---------------------------cCHHHHHHHHHhhCC
Confidence 124688999999887 588888888887764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=166.46 Aligned_cols=163 Identities=25% Similarity=0.292 Sum_probs=113.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+|+++|.+|+|||||+|+|+|.++...+..+ ||.......+.. ++ ..+.|||
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-------------~~-----------~qi~~~D 106 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-------------KD-----------TQVILYD 106 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-------------CC-----------eEEEEEE
Confidence 3468999999999999999999999875433333 343222111110 11 2489999
Q ss_pred CCCCChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||+... .......+...+..+|++|||+|+..++...+..++..++..+.|+++|+||+|+... ...++.+.+
T Consensus 107 TpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--~~~~~~~~l 184 (339)
T PRK15494 107 TPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--YLNDIKAFL 184 (339)
T ss_pred CCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--cHHHHHHHH
Confidence 9998532 2223344455678999999999998888777777888887777888999999998642 223333322
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
. .. .....+|++||+++ .|+++|.+++.+.+.+.
T Consensus 185 ~----~~--~~~~~i~~iSAktg---------------------------~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 185 T----EN--HPDSLLFPISALSG---------------------------KNIDGLLEYITSKAKIS 218 (339)
T ss_pred H----hc--CCCcEEEEEeccCc---------------------------cCHHHHHHHHHHhCCCC
Confidence 2 21 12367999999987 68999999998887753
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=173.38 Aligned_cols=143 Identities=24% Similarity=0.325 Sum_probs=113.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..+|+++|+||+|||||+|+|+|.+....++..+|.+.....+...+ +++.++|+|
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~------------------------~~i~ivDLP 58 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG------------------------HEIEIVDLP 58 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC------------------------ceEEEEeCC
Confidence 35699999999999999999999998888999999876665544332 248999999
Q ss_pred CCChhh--hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNVIL--QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~--~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|+++.. ..++.++++|+ .++|+||.|+|+++. +.+..+.-++.+.+.|+++++|++|.... .-.+.-.+
T Consensus 59 G~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~-----~Gi~ID~~ 131 (653)
T COG0370 59 GTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKK-----RGIRIDIE 131 (653)
T ss_pred CcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHh-----cCCcccHH
Confidence 998763 56788999998 578999999999964 67788888999999999999999997533 11122233
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.++ +||+++||+++
T Consensus 132 ~L~~~LG---vPVv~tvA~~g 149 (653)
T COG0370 132 KLSKLLG---VPVVPTVAKRG 149 (653)
T ss_pred HHHHHhC---CCEEEEEeecC
Confidence 4444444 89999999987
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.7e-15 Score=167.52 Aligned_cols=182 Identities=27% Similarity=0.367 Sum_probs=113.3
Q ss_pred hhhccccCCCchHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC
Q 002437 311 ERVAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL 390 (921)
Q Consensus 311 ~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~ 390 (921)
+.++..+||.++... .+.....+......+++.... . ....+...++|+++|.+|+|||||+|+|++.+..
T Consensus 159 a~iea~iDf~ee~~~-~~~~~~~l~~~~~~l~~ll~~-------~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~a 229 (442)
T TIGR00450 159 AQVEVNIDYEEDDDE-QDSLNQLLLSIIAELKDILNS-------Y-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRA 229 (442)
T ss_pred HHeeEECCcCCCCcc-HHHHHHHHHHHHHHHHHHHHH-------H-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 456778888764211 122222333333333332111 1 1134557789999999999999999999998653
Q ss_pred -CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhhhHH----HHHHHHhcCCCCE
Q 002437 391 -KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQ----QRLTEEFVPRADL 465 (921)
Q Consensus 391 -~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~----~~~~~~~l~~aD~ 465 (921)
.....+||..+....... +| ..+.+|||||+....... ...+..++..+|+
T Consensus 230 ivs~~pgtTrd~~~~~i~~-------------~g-----------~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~ 285 (442)
T TIGR00450 230 IVSDIKGTTRDVVEGDFEL-------------NG-----------ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADL 285 (442)
T ss_pred ccCCCCCcEEEEEEEEEEE-------------CC-----------EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCE
Confidence 344445555433222111 11 147899999985332211 1335678899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 466 VLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 466 il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
+|||+|++++.+..+. ++..+...+.|+++|+||+|+... +.+. + ... ...+++.+||++
T Consensus 286 il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~--~~~~----~----~~~---~~~~~~~vSak~ 345 (442)
T TIGR00450 286 VIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN--SLEF----F----VSS---KVLNSSNLSAKQ 345 (442)
T ss_pred EEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc--chhh----h----hhh---cCCceEEEEEec
Confidence 9999999988877665 667776678899999999998643 1111 1 111 135688999976
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=150.00 Aligned_cols=157 Identities=24% Similarity=0.250 Sum_probs=100.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|++.+........+|..+....+... + ..+.+|||||
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~-------------~-----------~~~~i~Dt~G 56 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK-------------Y-----------LRWQVIDTPG 56 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC-------------c-----------eEEEEEECCC
Confidence 579999999999999999999987643333334443332221110 0 2589999999
Q ss_pred CChhh--hH--H-HHHHHHhcCCCCEEEEEEeCCCCCC---HHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHH
Q 002437 445 TNVIL--QR--Q-QRLTEEFVPRADLVLFVISADRPLT---ESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 445 ~~~~~--~~--~-~~~~~~~l~~aD~il~V~da~~~~t---~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
+.... .+ . ..........+|++|+|+|+++..+ ....+++..++.. +.|+++|+||+|+... ....+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~-~~~~~-- 133 (168)
T cd01897 57 LLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF-EDLSE-- 133 (168)
T ss_pred cCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch-hhHHH--
Confidence 84211 11 0 1111111234699999999986543 3334566666654 7899999999999754 22222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.. .+......+++++||+++ .|++++.+++.+.|
T Consensus 134 --~~----~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~ 167 (168)
T cd01897 134 --IE----EEEELEGEEVLKISTLTE---------------------------EGVDEVKNKACELL 167 (168)
T ss_pred --HH----HhhhhccCceEEEEeccc---------------------------CCHHHHHHHHHHHh
Confidence 11 111223568999999987 78999988887654
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-15 Score=150.98 Aligned_cols=167 Identities=22% Similarity=0.126 Sum_probs=104.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..+|+++|+.++|||||+++|++.... .+.... ..... .+....+..+..........+.+ --..++++|||
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~-~g~~~~-~~~~~---~d~~~~E~~rg~Ti~~~~~~~~~---~~~~i~~iDtP 73 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAK-KGGAKF-KKYDE---IDKAPEEKARGITINTAHVEYET---ANRHYAHVDCP 73 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHh-cccccc-ccccc---ccCChhhhhcCccEEeeeeEecC---CCeEEEEEECc
Confidence 468999999999999999999864210 000000 00000 00001111111111111110000 01358999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
|.. .+...+...+..+|++++|+|+..+.......++..+...+.| +|+|+||+|+...++..+.+.+.+...+.
T Consensus 74 G~~----~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 74 GHA----DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred CHH----HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 974 3344456677899999999999988888888888888888876 78999999997543334445556666655
Q ss_pred Hhh-CCCCCeEEEecccchHH
Q 002437 523 KLL-NIENVTIYPVSARSTLE 542 (921)
Q Consensus 523 ~~~-~~~~~~v~~vSA~~~l~ 542 (921)
.+- ....++++|+||+.|.+
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALE 170 (195)
T ss_pred HhcccccCCeEEEeeCccccC
Confidence 531 22468999999999853
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-15 Score=172.67 Aligned_cols=166 Identities=27% Similarity=0.345 Sum_probs=118.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+..... ..+||.......+.. ++ ..+.+||
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-------------~~-----------~~~~liD 226 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-------------NG-----------KKYLLID 226 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-------------CC-----------cEEEEEE
Confidence 4689999999999999999999998754433 344554332222211 11 2489999
Q ss_pred CCCCChhh------hHH-HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVIL------QRQ-QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~~------~~~-~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+.... +.+ ...+..++..+|++|+|+|+.++.+..+..++..+...+.|+++|+||||+..+.+..+++.
T Consensus 227 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~ 306 (429)
T TIGR03594 227 TAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFK 306 (429)
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHH
Confidence 99984321 111 12245678999999999999999999999999888888999999999999984434455555
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+...+.. ....+++++||+++ .|+.++.+.+.+...
T Consensus 307 ~~~~~~~~~---~~~~~vi~~SA~~g---------------------------~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 307 KELRRKLPF---LDFAPIVFISALTG---------------------------QGVDKLLDAIDEVYE 344 (429)
T ss_pred HHHHHhccc---CCCCceEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 555443322 24578999999987 678888777776543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=148.83 Aligned_cols=151 Identities=26% Similarity=0.332 Sum_probs=103.9
Q ss_pred EEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 368 VIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 368 ~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
+++|.+|+|||||+|.|++.+.... ...++|.......... ++ ..+.+|||||++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~i~DtpG~~ 56 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-------------GG-----------REFILIDTGGIE 56 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-------------CC-----------eEEEEEECCCCC
Confidence 4799999999999999999864332 2333443222211110 11 248999999997
Q ss_pred hhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 447 VILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 447 ~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
.... .....+...+..+|+++||+|+.++.+..+..++..++..+.|+++|+||+|+...... ...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--------~~~~~ 128 (157)
T cd01894 57 PDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--------AAEFY 128 (157)
T ss_pred CchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--------HHHHH
Confidence 5432 23334556778999999999999888777777778888888999999999999865221 11122
Q ss_pred HhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 523 KLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 523 ~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
. ++ ..+++++|++.+ .|++++.+.+.+.
T Consensus 129 ~-~~--~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~ 156 (157)
T cd01894 129 S-LG--FGEPIPISAEHG---------------------------RGIGDLLDAILEL 156 (157)
T ss_pred h-cC--CCCeEEEecccC---------------------------CCHHHHHHHHHhh
Confidence 2 12 236899999987 6888888877654
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=158.11 Aligned_cols=160 Identities=13% Similarity=0.019 Sum_probs=125.2
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCHHHH-HHHHHHHHHHhhc---CceEEecCcH----HHHHhCCCCeEEcCCCCCCHH--
Q 002437 103 DLIDEAVAKFVGIVVLNGGEASGKSV-YEAACLLKSVVKD---RALFLIAERV----DIAAAVNASGVLLSDQGLPAI-- 172 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k~~~~~~~-~~~a~~l~~~~~~---~~~~ivnd~~----dla~~~~a~GvHL~~~~l~~~-- 172 (921)
+.++.+.+.|+++||+|.+..+.+.+ .+.|+.+.++|+. ++.|++|+++ ++|..+++|||||++.+ +..
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e-~~~~~ 88 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE-SPEYC 88 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC-CHHHH
Confidence 66888999999999999999999999 9999999999975 6899999999 69999999999999886 333
Q ss_pred -HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC---Ccc--hhhhhhc-CCCCEEEEcCCC
Q 002437 173 -VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA---DVI--ENSLFTN-VKIPIFIMNASP 245 (921)
Q Consensus 173 -~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~---g~~--~~~~~~~-~~~Pv~aiGGi~ 245 (921)
..|..+| .. ++..+++|+|+..++..+ ...++||+++-..||... |.. ...+.+. .++||+++|||+
T Consensus 89 ~~l~~~~~---~~--~i~~i~~~~~~~~~~~~~-~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~~~~PvilaGGI~ 162 (203)
T cd00405 89 AQLRARLG---LP--VIKAIRVKDEEDLEKAAA-YAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLASRKPVILAGGLT 162 (203)
T ss_pred HHHHhhcC---Cc--EEEEEecCChhhHHHhhh-ccccCCEEEEcCCCCCCCCCCcceEChHHhhccccCCCEEEECCCC
Confidence 3344343 23 212388899887777677 678999999854455432 222 1222222 589999999999
Q ss_pred ccChHHHHHcC-CcEEEEeeccccc
Q 002437 246 LVDVSKFLKSG-ASGFVISLEDLSL 269 (921)
Q Consensus 246 ~~~~~~~~~~G-a~gva~~~a~~~~ 269 (921)
++|+.++.++| ++||+++++....
T Consensus 163 ~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 163 PDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred hHHHHHHHHhcCCCEEEcCCcccCC
Confidence 99999999999 9999998887654
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=151.12 Aligned_cols=158 Identities=23% Similarity=0.216 Sum_probs=97.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
.|+++|.+|+|||||+|+|.+.+..+....++|..+....... ++. ..+.++||||+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~-------------~~~----------~~~~l~DtpG~ 58 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-------------DDG----------RSFVVADIPGL 58 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc-------------CCC----------CeEEEEecCcc
Confidence 4899999999999999999987654333334443332221110 000 14899999998
Q ss_pred ChhhhH---HHHHHHHhcCCCCEEEEEEeCCCC-CCHHHH-HHHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 446 NVILQR---QQRLTEEFVPRADLVLFVISADRP-LTESEV-VFLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 446 ~~~~~~---~~~~~~~~l~~aD~il~V~da~~~-~t~~e~-~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
...... ....+...+..+|++++|+|++++ .+.... .+++.+.. .+.|+++|+||+|+..... ..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~--- 134 (170)
T cd01898 59 IEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFE--- 134 (170)
T ss_pred cCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHH---
Confidence 532221 112233345679999999999977 344433 33444432 3589999999999875422 222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
......... ...+++++||+.+ .|+.++.+.+.+.
T Consensus 135 ~~~~~~~~~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~i~~~ 169 (170)
T cd01898 135 LLKELLKEL---WGKPVFPISALTG---------------------------EGLDELLRKLAEL 169 (170)
T ss_pred HHHHHHhhC---CCCCEEEEecCCC---------------------------CCHHHHHHHHHhh
Confidence 122111111 2467999999987 6888887777653
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-14 Score=154.16 Aligned_cols=169 Identities=30% Similarity=0.363 Sum_probs=105.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC-----CCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG-----KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg-----~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+..|+|+|.+|+|||||||+|.| ....++|...||..++.|.+... .++
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-------------------------pnv 88 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-------------------------PNV 88 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--------------------------TTE
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-------------------------CCC
Confidence 568999999999999999999987 34567777788888887765432 369
Q ss_pred EEEeCCCCChhhhHHHHHHHH-hcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCC-CCC-------hH
Q 002437 438 IIVDTPGTNVILQRQQRLTEE-FVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL-YQN-------AF 508 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~-~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~-~~~-------~~ 508 (921)
++||.||++...-.......+ -+...|.+|+|.+.. ++..+..+.+.++.+++|+++|-||+|. +.+ .-
T Consensus 89 ~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f 166 (376)
T PF05049_consen 89 TLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER--FTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTF 166 (376)
T ss_dssp EEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT-
T ss_pred eEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC--CchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCccc
Confidence 999999997553222222222 257889888877644 8899999999999999999999999995 101 01
Q ss_pred HHHHHHHHHHHHHHHhh---CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 509 ELEEAISFVKENTMKLL---NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~---~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+++.+.+++++.+.+ +...++||.||+..- ..-.|+.|++.+..-|..
T Consensus 167 ~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl-------------------------~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 167 NEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL-------------------------SKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp -HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT-------------------------TSTTHHHHHHHHHHHS-G
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc-------------------------ccCChHHHHHHHHHHhHH
Confidence 12334444444444433 446789999999753 124799999999887774
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=169.46 Aligned_cols=165 Identities=29% Similarity=0.347 Sum_probs=118.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.+....+.. ++|.......+.. ++ ..+.+||
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-------------~~-----------~~~~lvD 227 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-------------DG-----------QKYTLID 227 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-------------CC-----------eeEEEEE
Confidence 568999999999999999999999875544443 3444332222211 11 2489999
Q ss_pred CCCCChhh------hHH-HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVIL------QRQ-QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~~------~~~-~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+.... +.+ ...+..++..+|++|+|+|+..+.+.++..++..+...++|+++|+||||+.. .+..+++.
T Consensus 228 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~-~~~~~~~~ 306 (435)
T PRK00093 228 TAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD-EKTMEEFK 306 (435)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC-HHHHHHHH
Confidence 99974221 111 12244678899999999999999999999998888888999999999999983 33445555
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+...+.. ....+++++||+.+ .|+.++.+.+.+...
T Consensus 307 ~~~~~~l~~---~~~~~i~~~SA~~~---------------------------~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 307 KELRRRLPF---LDYAPIVFISALTG---------------------------QGVDKLLEAIDEAYE 344 (435)
T ss_pred HHHHHhccc---ccCCCEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 555443332 24579999999987 678888877776544
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=147.55 Aligned_cols=162 Identities=23% Similarity=0.366 Sum_probs=111.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCC-CCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRY-LKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+..++|+++|.+|+|||||+|+|++.+. ..... .++|..+..+... .++.|
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~l~l 74 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---------------------------DKLRL 74 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---------------------------CeEEE
Confidence 3568999999999999999999999763 22222 2233333222110 25899
Q ss_pred EeCCCCChh------hhHHHHHHHHhcC---CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHH
Q 002437 440 VDTPGTNVI------LQRQQRLTEEFVP---RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 440 vDTPG~~~~------~~~~~~~~~~~l~---~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
|||||+... ...+..+...++. .++++++|+|++.+.+..+.+++..+...+.|+++|+||+|+... .+.
T Consensus 75 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~-~~~ 153 (196)
T PRK00454 75 VDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK-GER 153 (196)
T ss_pred eCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH-HHH
Confidence 999997421 2233445555554 447899999998888887777777777778999999999999754 333
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.....+...+.. ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 154 ~~~~~~i~~~l~~----~~~~~~~~Sa~~~---------------------------~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 154 KKQLKKVRKALKF----GDDEVILFSSLKK---------------------------QGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHHHh----cCCceEEEEcCCC---------------------------CCHHHHHHHHHHHhc
Confidence 4444434433322 2478999999987 688899888887765
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=149.11 Aligned_cols=176 Identities=26% Similarity=0.241 Sum_probs=106.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCC------CCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKR------YLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~------~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+|+++|++|+|||||+|+|++.. ..+. ....+|.......+..... ........+..-...+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKP----------KHLRELINPGEENLQI 70 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccc----------ccccccccccccCceE
Confidence 369999999999999999999741 1111 0111232222211110000 0000000000001258
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.+|||||.... ..........+|++++|+|+..+.+....+.+......+.|+++|+||+|+... ++.+...+.+
T Consensus 71 ~i~DtpG~~~~----~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~-~~~~~~~~~~ 145 (192)
T cd01889 71 TLVDCPGHASL----IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE-EERERKIEKM 145 (192)
T ss_pred EEEECCCcHHH----HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH-HHHHHHHHHH
Confidence 99999997432 222334457789999999999877666555555444567899999999999743 3334444444
Q ss_pred HHHHHHhh---CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLL---NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~---~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.+...+ +....+++++||+++ .|+++|.+.+.+.+.
T Consensus 146 ~~~l~~~~~~~~~~~~~vi~iSa~~g---------------------------~gi~~L~~~l~~~~~ 186 (192)
T cd01889 146 KKKLQKTLEKTRFKNSPIIPVSAKPG---------------------------GGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHhcCcCCCCEEEEeccCC---------------------------CCHHHHHHHHHhccc
Confidence 44443332 234578999999987 789999988887654
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=167.39 Aligned_cols=165 Identities=25% Similarity=0.259 Sum_probs=114.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+... ....+||.......+.. +| ..+.|||
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-------------~~-----------~~~~l~D 265 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-------------GG-----------KTWRFVD 265 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-------------CC-----------EEEEEEE
Confidence 46899999999999999999999987543 33444554332211110 11 2478999
Q ss_pred CCCCChh------hhHHHHH-HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVI------LQRQQRL-TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~------~~~~~~~-~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+... .+.+... +..++..+|++|+|+|++++.+..+..++..+...+.|+|+|+||||+... +......
T Consensus 266 TaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-~~~~~~~ 344 (472)
T PRK03003 266 TAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-DRRYYLE 344 (472)
T ss_pred CCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-hHHHHHH
Confidence 9997311 1122222 345678999999999999999999999888888889999999999999753 2222222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+...+. .....+++++||+++ .|++++...+.+.+.
T Consensus 345 ~~i~~~l~---~~~~~~~~~~SAk~g---------------------------~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 345 REIDRELA---QVPWAPRVNISAKTG---------------------------RAVDKLVPALETALE 382 (472)
T ss_pred HHHHHhcc---cCCCCCEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22332222 123478999999997 688888888877654
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=143.74 Aligned_cols=150 Identities=32% Similarity=0.406 Sum_probs=105.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++......+..+ +|..+....+.. .+ ..+.++|||
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~i~Dtp 57 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-------------GG-----------IPVRLIDTA 57 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-------------CC-----------EEEEEEECC
Confidence 57999999999999999999998754433333 333322222111 11 248999999
Q ss_pred CCChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|+..... .........+..+|++++|+|++++.+..+..++.. ..+.|+++|+||+|+......
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------- 125 (157)
T cd04164 58 GIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------- 125 (157)
T ss_pred CcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc----------
Confidence 9864422 112234566789999999999999888888776665 457899999999999854211
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.......+++++||+++ .|++++.+.|.+.+
T Consensus 126 ----~~~~~~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 ----LSLLAGKPIIAISAKTG---------------------------EGLDELKEALLELA 156 (157)
T ss_pred ----ccccCCCceEEEECCCC---------------------------CCHHHHHHHHHHhh
Confidence 11223578999999886 68888888877653
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=141.79 Aligned_cols=169 Identities=28% Similarity=0.376 Sum_probs=119.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.+..|.++|.||+|||||||||++.+..+....+.+.+++....... ++ +.++||||
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~------------~~-----------~~l~lwDt 94 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY------------DG-----------ENLVLWDT 94 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc------------cc-----------cceEEecC
Confidence 56778899999999999999999877776665554443332211111 11 36999999
Q ss_pred CCCChh---hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCC-----------
Q 002437 443 PGTNVI---LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQN----------- 506 (921)
Q Consensus 443 PG~~~~---~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~----------- 506 (921)
||+++. +.++.+...+++++.|+++++++++++.-..+.+|+..+.. .++++++++|.+|...+
T Consensus 95 PG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p 174 (296)
T COG3596 95 PGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQP 174 (296)
T ss_pred CCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCC
Confidence 999764 44578889999999999999999999887888888887754 45899999999997654
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 507 AFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+++..+.-.+.+.+++. +--||+++|.+.+ -|+..|-..+..++.
T Consensus 175 ~~a~~qfi~~k~~~~~~~~q-~V~pV~~~~~r~~---------------------------wgl~~l~~ali~~lp 222 (296)
T COG3596 175 SPAIKQFIEEKAEALGRLFQ-EVKPVVAVSGRLP---------------------------WGLKELVRALITALP 222 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHh-hcCCeEEeccccC---------------------------ccHHHHHHHHHHhCc
Confidence 11222222222222233322 2357888885544 388888888888877
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=171.10 Aligned_cols=143 Identities=21% Similarity=0.302 Sum_probs=99.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|++|+|||||+|+|+|.+....+...+|.+.....+... + ..+.++|||
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~-------------~-----------~~i~lvDtP 58 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT-------------D-----------HQVTLVDLP 58 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC-------------c-----------eEEEEEECC
Confidence 4689999999999999999999987655555556654443332211 1 248999999
Q ss_pred CCChhh------hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 444 GTNVIL------QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 444 G~~~~~------~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|+++.. ...+.+...++ ..+|++++|+|+++. +.+..++.++.+.+.|+++|+||+|..... ......
T Consensus 59 G~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~-~i~id~- 134 (772)
T PRK09554 59 GTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQ-NIRIDI- 134 (772)
T ss_pred CccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhcc-CcHHHH-
Confidence 997643 12334455564 589999999999874 445667778888899999999999986331 111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.+.+ +.+++++||+.+
T Consensus 135 ---~~L~~~L---G~pVvpiSA~~g 153 (772)
T PRK09554 135 ---DALSARL---GCPVIPLVSTRG 153 (772)
T ss_pred ---HHHHHHh---CCCEEEEEeecC
Confidence 2233333 368999999886
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-13 Score=141.89 Aligned_cols=177 Identities=23% Similarity=0.328 Sum_probs=133.7
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCCCCccceeEEEEccCCccchhhccc-cc---------CCCe---
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYL--KDGVVPTTNEITFLRFSDLASEEQQRCE-RH---------PDGQ--- 424 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~~~tT~~~~~~~~~~~~~~~~~~~~-~~---------~~g~--- 424 (921)
..+.++.|.++|..+.|||||||.|+..++. ..|+.|||..+..+.+++.......... .. .-|.
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 4557899999999999999999999998764 4688899999999998876532110000 00 0000
Q ss_pred --E-EeecCCCcccccEEEeCCCCChhhhH-------HHHHHHHhcCCCCEEEEEEeCCCC-CCHHHHHHHHHhhhcCCe
Q 002437 425 --Y-ICYLPSPILKEMIIVDTPGTNVILQR-------QQRLTEEFVPRADLVLFVISADRP-LTESEVVFLRYTQQWKKK 493 (921)
Q Consensus 425 --~-~~~~p~~~l~~l~lvDTPG~~~~~~~-------~~~~~~~~l~~aD~il~V~da~~~-~t~~e~~~l~~l~~~~~~ 493 (921)
+ -..+|++.|..++||||||+-+...+ +..++.+|+.++|.|++++|+..- .+.+-.+++..++.....
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk 213 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK 213 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce
Confidence 1 12478888999999999999655332 456788999999999999999764 455566789999999999
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 494 VVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 494 vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+-+|+||+|.+.. +++..+...+...+...++..++.-+.+-+
T Consensus 214 iRVVLNKADqVdt-qqLmRVyGALmWslgkv~nTpev~rvYigS 256 (532)
T KOG1954|consen 214 IRVVLNKADQVDT-QQLMRVYGALMWSLGKVMNTPEVSRVYIGS 256 (532)
T ss_pred eEEEeccccccCH-HHHHHHHHHHHHhhhhhcCCCcceeEEeec
Confidence 9999999999965 667888888888888888766655444444
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=158.28 Aligned_cols=161 Identities=21% Similarity=0.178 Sum_probs=108.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
..|+++|.+|||||||+|+|++.+.....+..||..+........ ++ ..++++||||
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~------------~~-----------~~~~i~D~PG 215 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD------------DY-----------KSFVIADIPG 215 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC------------CC-----------cEEEEEeCCC
Confidence 569999999999999999999987655566667776655332110 11 2489999999
Q ss_pred CChhhh---HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 445 TNVILQ---RQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 445 ~~~~~~---~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
+..... .......+++.++|++|||+|+++..+.++.. +...+.. ..+|+++|+||+|+....+..++..
T Consensus 216 li~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~- 294 (335)
T PRK12299 216 LIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRA- 294 (335)
T ss_pred ccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHH-
Confidence 853211 12233455678899999999998765555544 4445543 3579999999999975422111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...... ...++|++||+++ .|++++.+.+.+.+.
T Consensus 295 --~~~~~~----~~~~i~~iSAktg---------------------------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 295 --ALELAA----LGGPVFLISAVTG---------------------------EGLDELLRALWELLE 328 (335)
T ss_pred --HHHHHh----cCCCEEEEEcCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111111 2367999999887 689999988887765
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=162.31 Aligned_cols=163 Identities=20% Similarity=0.150 Sum_probs=108.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.-|+++|.||||||||+|+|++.+...+....||..+....+...+ + ..++|+||||
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~------------~-----------~~i~~vDtPG 216 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD------------E-----------RSFVVADIPG 216 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC------------C-----------cEEEEEeCCC
Confidence 3599999999999999999999887556667788766654332111 1 1489999999
Q ss_pred CChhhhH---HHHHHHHhcCCCCEEEEEEeCCC---CCC-HHHHHHHHHhhh-----cCCeEEEEEeCCCCCCChHHHHH
Q 002437 445 TNVILQR---QQRLTEEFVPRADLVLFVISADR---PLT-ESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 445 ~~~~~~~---~~~~~~~~l~~aD~il~V~da~~---~~t-~~e~~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+...... ......+++.++|++++|+|++. ... .....+++.+.. ..+|+++|+||+|+... +++.+
T Consensus 217 i~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~el~~ 295 (390)
T PRK12298 217 LIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-EEAEE 295 (390)
T ss_pred ccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-HHHHH
Confidence 8532111 12233456899999999999872 222 222345555554 35899999999998743 33332
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
....+. ..+. ...+|+++||+++ .|+++|.+.|.+.+.+
T Consensus 296 ~l~~l~----~~~~-~~~~Vi~ISA~tg---------------------------~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 296 RAKAIV----EALG-WEGPVYLISAASG---------------------------LGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHH----HHhC-CCCCEEEEECCCC---------------------------cCHHHHHHHHHHHhhh
Confidence 222222 1122 1236999999887 6899998888887764
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=137.19 Aligned_cols=110 Identities=37% Similarity=0.557 Sum_probs=80.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+|+|.+|+|||||+|+|++.+....+ ..++|..+....+.. ++ ..+.|+||||
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-------------~~-----------~~~~~vDtpG 56 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-------------NN-----------KKFILVDTPG 56 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-------------TT-----------EEEEEEESSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-------------ce-----------eeEEEEeCCC
Confidence 5899999999999999999997655444 345666553322111 11 2478999999
Q ss_pred CChhhhH-----HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeC
Q 002437 445 TNVILQR-----QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNK 500 (921)
Q Consensus 445 ~~~~~~~-----~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK 500 (921)
+++.... ....+.+.+..+|+++||+|++++.+..+.++++.++ .++|+++|+||
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 57 INDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 9754222 2223445559999999999998866677788888886 88999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-15 Score=150.81 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=124.5
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHHH
Q 002437 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 98 ~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
..+..+.++.++++|+++||+|.++.+..+ ..+.+++.+.. |+ .++.+++++.|..+||+|+|+++.+.+...
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~ 91 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRTPGALE---AIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVK 91 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHH
Confidence 347789999999999999999998766433 55555555531 33 445599999999999999999999988888
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHH
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSK 251 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~ 251 (921)
+++..+ .. . ++|++ |++|+.+| .+.||||+.+-|.+. .|.. .+.++... ++|++|+|||+++|+.+
T Consensus 92 ~~~~~~---~~-~---i~gv~--t~~e~~~A-~~~Gad~i~~~p~~~--~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~ 159 (190)
T cd00452 92 AANRAG---IP-L---LPGVA--TPTEIMQA-LELGADIVKLFPAEA--VGPAYIKALKGPFPQVRFMPTGGVSLDNAAE 159 (190)
T ss_pred HHHHcC---Cc-E---ECCcC--CHHHHHHH-HHCCCCEEEEcCCcc--cCHHHHHHHHhhCCCCeEEEeCCCCHHHHHH
Confidence 887765 33 2 56777 99999999 899999999977522 3655 56777666 59999999999999999
Q ss_pred HHHcCCcEEEEeeccc
Q 002437 252 FLKSGASGFVISLEDL 267 (921)
Q Consensus 252 ~~~~Ga~gva~~~a~~ 267 (921)
+.++|+++|+++++..
T Consensus 160 ~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 160 WLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHCCCEEEEEchhcc
Confidence 9999999999888876
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-15 Score=152.58 Aligned_cols=203 Identities=21% Similarity=0.190 Sum_probs=143.3
Q ss_pred ccccCCCchHHHHHHHHH-HHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC
Q 002437 314 AGFVKFEDREKQLIETER-SVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKD 392 (921)
Q Consensus 314 ~~~~~~~~~~~~~~e~~~-~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~ 392 (921)
.+.. ..|.++..++.+. +++......+++.+......+ ..+....-...++|+|+|.+|||||||||+|++..+.|.
T Consensus 129 ~g~~-v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~ 206 (410)
T KOG0410|consen 129 SGGQ-VKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPN 206 (410)
T ss_pred CCCc-ccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCcc
Confidence 3444 5566666676665 677777777777554444333 222223334568999999999999999999999999998
Q ss_pred CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhhhH----HHHHHHHhcCCCCEEEE
Q 002437 393 GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQR----QQRLTEEFVPRADLVLF 468 (921)
Q Consensus 393 ~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~----~~~~~~~~l~~aD~il~ 468 (921)
+..+.|-++|.-. ...+.|. .+.+.||-|+-+..+. ..+.+.+.+..+|++|.
T Consensus 207 drLFATLDpT~h~------------a~Lpsg~-----------~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllH 263 (410)
T KOG0410|consen 207 DRLFATLDPTLHS------------AHLPSGN-----------FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLH 263 (410)
T ss_pred chhheeccchhhh------------ccCCCCc-----------EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEE
Confidence 8888887665422 1233443 4899999999665443 35678888899999999
Q ss_pred EEeCCCCCCHHHHH-HHHHhhhcCC-------eEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 469 VISADRPLTESEVV-FLRYTQQWKK-------KVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 469 V~da~~~~t~~e~~-~l~~l~~~~~-------~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
|+|.++|..+.+.+ .++.++..+. .++-|-||+|...... ..+....+++|+++|
T Consensus 264 vvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------------e~E~n~~v~isaltg 326 (410)
T KOG0410|consen 264 VVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------------EEEKNLDVGISALTG 326 (410)
T ss_pred EeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------------ccccCCccccccccC
Confidence 99999998776664 6666666554 3777899999765421 112233789999988
Q ss_pred HHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCC
Q 002437 541 LEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSS 585 (921)
Q Consensus 541 l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~ 585 (921)
.|+++|.+.+...+....
T Consensus 327 ---------------------------dgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 327 ---------------------------DGLEELLKAEETKVASET 344 (410)
T ss_pred ---------------------------ccHHHHHHHHHHHhhhhh
Confidence 788888888877766433
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-14 Score=138.44 Aligned_cols=145 Identities=33% Similarity=0.419 Sum_probs=98.9
Q ss_pred EEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCCh
Q 002437 369 IVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNV 447 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~ 447 (921)
++|.+|+|||||+|+|++.... .....++|.......+.... ...+.++||||+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~Dt~g~~~ 57 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-----------------------LGPVVLIDTPGIDE 57 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-----------------------CCcEEEEECCCCCc
Confidence 5899999999999999998766 33344444433332221110 12589999999865
Q ss_pred hhhHHH---HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 448 ILQRQQ---RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 448 ~~~~~~---~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
...... ..+..++..+|++++|+|+..+.......++......+.|+++|+||+|+.... ....... ......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~---~~~~~~ 133 (163)
T cd00880 58 AGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE-EEEELLE---LRLLIL 133 (163)
T ss_pred cccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh-hHHHHHH---HHHhhc
Confidence 433222 466778899999999999999887777665666667889999999999998652 2222211 111111
Q ss_pred hCCCCCeEEEecccch
Q 002437 525 LNIENVTIYPVSARST 540 (921)
Q Consensus 525 ~~~~~~~v~~vSA~~~ 540 (921)
......+++++|++.+
T Consensus 134 ~~~~~~~~~~~sa~~~ 149 (163)
T cd00880 134 LLLLGLPVIAVSALTG 149 (163)
T ss_pred ccccCCceEEEeeecc
Confidence 2335689999999876
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=141.85 Aligned_cols=151 Identities=28% Similarity=0.372 Sum_probs=97.9
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
++|.+|+|||||+|++++....+.....+|.......+.. ++ .++.+|||||+...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-------------GG-----------KEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-------------CC-----------eEEEEEECCCcccc
Confidence 5799999999999999998644333333444332211111 11 25899999998543
Q ss_pred hh--HHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 449 LQ--RQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 449 ~~--~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
.. ....+...++ ..+|++|+|+|+.++. ....++..+...++|+++|+||+|+.... ....... .+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~----~~~~~ 129 (158)
T cd01879 57 SPYSEDEKVARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLPVVVALNMIDEAEKR-GIKIDLD----KLSEL 129 (158)
T ss_pred CCCChhHHHHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCCEEEEEehhhhcccc-cchhhHH----HHHHh
Confidence 21 2233455555 4999999999998753 33455666667789999999999997542 1111111 22222
Q ss_pred hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 525 LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 525 ~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
+ ..+++++||+.+ .|+..+.+.+...
T Consensus 130 ~---~~~~~~iSa~~~---------------------------~~~~~l~~~l~~~ 155 (158)
T cd01879 130 L---GVPVVPTSARKG---------------------------EGIDELKDAIAEL 155 (158)
T ss_pred h---CCCeEEEEccCC---------------------------CCHHHHHHHHHHH
Confidence 2 368999999886 6788877777655
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-14 Score=145.22 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=113.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC--CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV--VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~--~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
+|+++|.+|+|||||+|+|+|.+...++. .++|.......... .| +.+++||||
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-------------~~-----------~~i~viDTP 57 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-------------DG-----------RRVNVIDTP 57 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-------------CC-----------eEEEEEECc
Confidence 69999999999999999999998765553 34454433322211 11 258999999
Q ss_pred CCChhhh---HH-HHH---HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc-C----CeEEEEEeCCCCCCChHHHH
Q 002437 444 GTNVILQ---RQ-QRL---TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW-K----KKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 444 G~~~~~~---~~-~~~---~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~-~----~~vivVlNK~D~~~~~~~~~ 511 (921)
|+.+... .. ..+ .....+.+|++|||+++.+ ++..+...++.+.+. + .++++|+|++|.... ..++
T Consensus 58 G~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~-~~~~ 135 (196)
T cd01852 58 GLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG-GTLE 135 (196)
T ss_pred CCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC-CcHH
Confidence 9975421 11 112 2223478899999999988 888998888888663 2 689999999998865 3445
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+........+..++.....+++.++.+.. .+ -...++.+|.+.+.+.+.+
T Consensus 136 ~~~~~~~~~l~~l~~~c~~r~~~f~~~~~-~~---------------------~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 136 DYLENSCEALKRLLEKCGGRYVAFNNKAK-GE---------------------EQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHhccHHHHHHHHHhCCeEEEEeCCCC-cc---------------------hhHHHHHHHHHHHHHHHHh
Confidence 54444444455555544567777776541 00 0135677888888887765
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=164.61 Aligned_cols=144 Identities=26% Similarity=0.282 Sum_probs=99.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++.........| +|.......... .+ ..+.+|
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-------------~~-----------~~~~l~ 91 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-------------NG-----------RRFTVV 91 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-------------CC-----------cEEEEE
Confidence 45689999999999999999999998754433333 333222211110 11 248899
Q ss_pred eCCCCChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||||+... .......+..++..||++|||+|++++.+..+..++..++..++|+++|+||+|+.....+.. ..
T Consensus 92 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~---~~ 168 (472)
T PRK03003 92 DTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAA---AL 168 (472)
T ss_pred eCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhH---HH
Confidence 99998521 223445566788999999999999998888888888888888899999999999864321111 11
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ++. ..++++||+.+
T Consensus 169 -----~~-~g~--~~~~~iSA~~g 184 (472)
T PRK03003 169 -----WS-LGL--GEPHPVSALHG 184 (472)
T ss_pred -----Hh-cCC--CCeEEEEcCCC
Confidence 11 122 23579999987
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=141.71 Aligned_cols=183 Identities=19% Similarity=0.182 Sum_probs=105.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC--CCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK--RYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~--~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+|+++|.+++|||||+|+|++. .+..... .++. ..+.. ...............+... ...+.+||
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~-----~~~~~---~e~~~g~t~~~~~~~~~~~---~~~~~l~D 71 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERV-----MDSND---LERERGITILAKNTAVTYK---DTKINIVD 71 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccc-----cccch---hHHhcccccccceeEEEEC---CEEEEEEE
Confidence 57999999999999999999963 2211110 0000 00000 0000000000000000000 02489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||.. ++...+..++..+|++++|+|+.+........++..+...+.|+++|+||+|+... ......+.+.+.+
T Consensus 72 tpG~~----~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~ 145 (194)
T cd01891 72 TPGHA----DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDA--RPEEVVDEVFDLF 145 (194)
T ss_pred CCCcH----HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHH
Confidence 99974 44556778889999999999998765455555566666678899999999999643 1222233333332
Q ss_pred HHhh---CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 522 MKLL---NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 522 ~~~~---~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
..+- .....+++++||+++..-. ....| ..++.+|.+.|.+++
T Consensus 146 ~~~~~~~~~~~~~iv~~Sa~~g~~~~----------------~~~~~-~~~~~~l~~~~~~~~ 191 (194)
T cd01891 146 IELGATEEQLDFPVLYASAKNGWASL----------------NLEDP-SEDLEPLFDTIIEHV 191 (194)
T ss_pred HHhCCccccCccCEEEeehhcccccc----------------ccccc-hhhHHHHHHHHHhcC
Confidence 2211 1225689999999984321 11223 467777777776654
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-14 Score=170.32 Aligned_cols=165 Identities=22% Similarity=0.287 Sum_probs=115.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+.. +....+||.......+.. +| ..+.|||
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-------------~~-----------~~~~liD 504 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-------------DG-----------EDWLFID 504 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-------------CC-----------CEEEEEE
Confidence 4589999999999999999999998754 344455665432211110 11 2478999
Q ss_pred CCCCChh------hhHHHH-HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVI------LQRQQR-LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~------~~~~~~-~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+... .+.+.. .+..+++.+|++++|+|++++.+..+..++..+...++|+++|+||||+... +..+...
T Consensus 505 TaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-~~~~~~~ 583 (712)
T PRK09518 505 TAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-FRRQRLE 583 (712)
T ss_pred CCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-hHHHHHH
Confidence 9997421 011111 2345678999999999999999999998888888889999999999999753 2223332
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+...+. .....+++++||+++ .|++++.+.+.+.+.
T Consensus 584 ~~~~~~l~---~~~~~~ii~iSAktg---------------------------~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 584 RLWKTEFD---RVTWARRVNLSAKTG---------------------------WHTNRLAPAMQEALE 621 (712)
T ss_pred HHHHHhcc---CCCCCCEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22322211 224578999999987 688888888877654
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=137.35 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=100.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++.++... ..|++. ++....... ++.. ..+.+||||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~l~~~D~~ 57 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ-YQATIGIDFLSKTMYL-------------EDKT---------VRLQLWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCceeeeEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 3799999999999999999999887543 223222 221111110 1110 137899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-c--CCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-W--KKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-~--~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. +.....+..++..+|++++|+|.+++.+..+. .++..+.. . +.|+++|+||+|+..... ..++.....
T Consensus 58 G~----~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~- 132 (161)
T cd01861 58 GQ----ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA- 132 (161)
T ss_pred Cc----HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHH-
Confidence 96 44556788889999999999999876554443 34554432 2 489999999999953311 111211111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.. ...+++++||+.+ .|++++.+.+.+.
T Consensus 133 ---~~----~~~~~~~~Sa~~~---------------------------~~v~~l~~~i~~~ 160 (161)
T cd01861 133 ---KE----LNAMFIETSAKAG---------------------------HNVKELFRKIASA 160 (161)
T ss_pred ---HH----hCCEEEEEeCCCC---------------------------CCHHHHHHHHHHh
Confidence 11 2367999999887 6888888877654
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.6e-14 Score=140.78 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=77.8
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.+.||||||.. +....+..++..+|++|+|+|++++.+......+..+...+.|+++|+||+|+.... .....+
T Consensus 68 ~~~l~Dt~G~~----~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~--~~~~~~ 141 (179)
T cd01890 68 LLNLIDTPGHV----DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD--PERVKQ 141 (179)
T ss_pred EEEEEECCCCh----hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC--HHHHHH
Confidence 47899999984 344566778899999999999998776666665555556778999999999986431 122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+ .+.++.....++++||+++ .|++++.+.+.+.+
T Consensus 142 ~~----~~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~ 176 (179)
T cd01890 142 QI----EDVLGLDPSEAILVSAKTG---------------------------LGVEDLLEAIVERI 176 (179)
T ss_pred HH----HHHhCCCcccEEEeeccCC---------------------------CCHHHHHHHHHhhC
Confidence 22 2233433346999999987 68888888887654
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-14 Score=162.77 Aligned_cols=140 Identities=26% Similarity=0.297 Sum_probs=100.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|.+|+|||||+|.|++......+. .++|.......... ++ ..+.+|||||
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-------------~~-----------~~~~liDTpG 56 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-------------GG-----------REFILIDTGG 56 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-------------CC-----------eEEEEEECCC
Confidence 48999999999999999999987544333 33444332221110 11 2489999999
Q ss_pred CChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+... .+.....+..++..+|+++||+|+..+.+..+..+.+.+++.++|+++|+||+|....+.... .
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~--------~ 128 (429)
T TIGR03594 57 IEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAA--------E 128 (429)
T ss_pred CCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHH--------H
Confidence 8532 234456677788999999999999999999988888888888999999999999875422111 1
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. .....+++++||..+
T Consensus 129 ~~---~lg~~~~~~vSa~~g 145 (429)
T TIGR03594 129 FY---SLGFGEPIPISAEHG 145 (429)
T ss_pred HH---hcCCCCeEEEeCCcC
Confidence 11 112346899999887
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-14 Score=136.88 Aligned_cols=129 Identities=23% Similarity=0.306 Sum_probs=82.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|.+.... ..+ |.. +.+ ...+|||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~~---~~~-----------------------------~~~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQA---VEY-----------------------------NDGAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-cee---EEE-----------------------------cCeeecCchh
Confidence 6999999999999999999987642 111 110 111 1268999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
..............++.+|++|+|+|++++.+..+..++..+ ..|+++|+||+|+.......++..+..+ ..
T Consensus 46 ~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~----~~- 117 (142)
T TIGR02528 46 YVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLAEADVDIERAKELLE----TA- 117 (142)
T ss_pred hhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccCCcccCHHHHHHHHH----Hc-
Confidence 422223223333457999999999999887765444444332 3599999999998643222222222222 11
Q ss_pred CCCCCeEEEecccch
Q 002437 526 NIENVTIYPVSARST 540 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~ 540 (921)
+ ..+++++||+++
T Consensus 118 ~--~~~~~~~Sa~~~ 130 (142)
T TIGR02528 118 G--AEPIFEISSVDE 130 (142)
T ss_pred C--CCcEEEEecCCC
Confidence 1 247999999987
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-14 Score=162.23 Aligned_cols=141 Identities=28% Similarity=0.345 Sum_probs=99.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|++.+....+ ..++|.......... +| ..+.+||||
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-------------~~-----------~~~~liDT~ 57 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-------------LG-----------REFILIDTG 57 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-------------CC-----------cEEEEEECC
Confidence 68999999999999999999998754333 333444332211110 11 258999999
Q ss_pred CCCh----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNV----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|+.. ........+..++..+|++|||+|+..+.+..+..+...++..+.|+++|+||+|....+.... +.
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~---~~--- 131 (435)
T PRK00093 58 GIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAY---EF--- 131 (435)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHH---HH---
Confidence 9975 2333455567788999999999999998888888888888888999999999999754221111 11
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ++ ...++++||+.+
T Consensus 132 --~~-lg--~~~~~~iSa~~g 147 (435)
T PRK00093 132 --YS-LG--LGEPYPISAEHG 147 (435)
T ss_pred --Hh-cC--CCCCEEEEeeCC
Confidence 11 12 234789999887
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=138.98 Aligned_cols=142 Identities=25% Similarity=0.298 Sum_probs=92.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|+|++.++.+.. .|++. .+....... ++.. ..+.++||
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D~ 59 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQI-------------DGKT---------IKAQIWDT 59 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEE-------------CCEE---------EEEEEEeC
Confidence 478999999999999999999988765332 23332 221111110 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||. ..+......++..+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|+||+|+..... ..++.....
T Consensus 60 ~g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~ 135 (165)
T cd01868 60 AGQ----ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA 135 (165)
T ss_pred CCh----HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH
Confidence 996 345566778889999999999998765555443 4554443 3579999999999864311 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ...+++++||+.+
T Consensus 136 ----~~----~~~~~~~~Sa~~~ 150 (165)
T cd01868 136 ----EK----NGLSFIETSALDG 150 (165)
T ss_pred ----HH----cCCEEEEEECCCC
Confidence 11 2468999999987
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=159.05 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=104.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.-|+++|.+|+|||||||+|++.+....+...||..++....... ++ ..++++||||
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~------------~~-----------~~~~laD~PG 215 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD------------DG-----------RSFVMADIPG 215 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe------------CC-----------ceEEEEECCC
Confidence 469999999999999999999987554556667766654322110 01 2489999999
Q ss_pred CChhhhHH---HHHHHHhcCCCCEEEEEEeCCCC---CCHHHH-HHHHHhhh-----cCCeEEEEEeCCCCCCChHHHHH
Q 002437 445 TNVILQRQ---QRLTEEFVPRADLVLFVISADRP---LTESEV-VFLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 445 ~~~~~~~~---~~~~~~~l~~aD~il~V~da~~~---~t~~e~-~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+....... .......+.++|++|||+|++.. ....+. .+...+.. ..+|+++|+||+|+....+.+
T Consensus 216 liega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l-- 293 (424)
T PRK12297 216 LIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENL-- 293 (424)
T ss_pred CcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHH--
Confidence 85322221 22234456789999999999753 222232 34444443 368999999999985332111
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+. +.++ .+++++||+++ .|+++|.+.+.+.+..
T Consensus 294 --~~l~----~~l~---~~i~~iSA~tg---------------------------eGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 294 --EEFK----EKLG---PKVFPISALTG---------------------------QGLDELLYAVAELLEE 328 (424)
T ss_pred --HHHH----HHhC---CcEEEEeCCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 1122 2222 57999999887 6899998888877653
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=141.67 Aligned_cols=146 Identities=20% Similarity=0.296 Sum_probs=88.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|.+..+. .+..|++ .....+.+ .++.+||
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~----------------------------~~~~l~D 58 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDW----------------------------GDFILTD 58 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEee----------------------------cceEEEe
Confidence 4579999999999999999999998743 4333332 21111110 1489999
Q ss_pred CCCCChh-------hhHHHHHHHHhc----CCCCEEEEEEeCCCCC-----------CHHHHHHHHHhhhcCCeEEEEEe
Q 002437 442 TPGTNVI-------LQRQQRLTEEFV----PRADLVLFVISADRPL-----------TESEVVFLRYTQQWKKKVVFVLN 499 (921)
Q Consensus 442 TPG~~~~-------~~~~~~~~~~~l----~~aD~il~V~da~~~~-----------t~~e~~~l~~l~~~~~~vivVlN 499 (921)
|||++.. .+.....+..++ ..+|++++|+|++... ...+.+++..+...+.|+++|+|
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~N 138 (201)
T PRK04213 59 LPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVN 138 (201)
T ss_pred CCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 9996422 122333333343 4578999999986421 22344556666667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH--hhCCCCCeEEEecccch
Q 002437 500 KSDLYQNAFELEEAISFVKENTMK--LLNIENVTIYPVSARST 540 (921)
Q Consensus 500 K~D~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~v~~vSA~~~ 540 (921)
|+|+.... ++....+.+.+.. .+.....+++++||+++
T Consensus 139 K~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 178 (201)
T PRK04213 139 KMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG 178 (201)
T ss_pred CccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC
Confidence 99987542 1122222222110 00001236899999873
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-14 Score=138.68 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=90.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|.+.+..+. ....||+......... .++.. ..+.|+||||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~G 58 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIE-------------VDGQQ---------CMLEILDTAG 58 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 68999999999999999999987653 3344554322111000 01110 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.. +...+...+++.+|++++|+|.+++.+..+. .++..+.. .+.|+++|.||+|+........+. ..
T Consensus 59 ~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~----~~ 130 (163)
T cd04136 59 TE----QFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREE----GQ 130 (163)
T ss_pred cc----ccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHH----HH
Confidence 73 4455677788999999999999876554443 34444432 357999999999986431111111 11
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+...+ ..+++++||+.+
T Consensus 131 ~~~~~~---~~~~~~~Sa~~~ 148 (163)
T cd04136 131 ALARQW---GCPFYETSAKSK 148 (163)
T ss_pred HHHHHc---CCeEEEecCCCC
Confidence 112222 268999999987
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-14 Score=154.54 Aligned_cols=160 Identities=24% Similarity=0.209 Sum_probs=105.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|+++|.+|+|||||+|+|++.+.....+..||..++....... ++ ..+.|+|||
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~------------~~-----------~~~~i~D~P 213 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD------------DG-----------RSFVIADIP 213 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC------------Cc-----------eEEEEEeCC
Confidence 3579999999999999999999987555556667765554332110 10 258999999
Q ss_pred CCChhhh---HHHHHHHHhcCCCCEEEEEEeCCCC---CCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHH
Q 002437 444 GTNVILQ---RQQRLTEEFVPRADLVLFVISADRP---LTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 444 G~~~~~~---~~~~~~~~~l~~aD~il~V~da~~~---~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|+..... .......+.+.++|++|||+|+++. ...++.. +.+++.. ..+|+++|+||+|+... ...+
T Consensus 214 Gli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-~~~~ 292 (329)
T TIGR02729 214 GLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-EELA 292 (329)
T ss_pred CcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-HHHH
Confidence 9843211 1223345556789999999999864 2333333 3333432 35899999999999754 2333
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+..+.+ .+.+ ..+++++||+++ .|++++.+.+.+.+
T Consensus 293 ~~~~~l----~~~~---~~~vi~iSAktg---------------------------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 293 ELLKEL----KKAL---GKPVFPISALTG---------------------------EGLDELLYALAELL 328 (329)
T ss_pred HHHHHH----HHHc---CCcEEEEEccCC---------------------------cCHHHHHHHHHHHh
Confidence 333322 2222 257999999886 68888888887654
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=135.27 Aligned_cols=157 Identities=25% Similarity=0.341 Sum_probs=104.9
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCC-CCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLK-DGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~-~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
|+++|.+|+|||||+|.|++....+ .+. ..+|..+..+... ..++++||||
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~~~D~~g 54 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN---------------------------DKFRLVDLPG 54 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc---------------------------CeEEEecCCC
Confidence 7899999999999999999543322 222 2233322222111 1489999999
Q ss_pred CChh------hhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 445 TNVI------LQRQQRLTEEFV---PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 445 ~~~~------~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
++.. ..........++ ...+++++|+|.+...+..+.++++.+...+.|+++|+||+|+... .+......
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~-~~~~~~~~ 133 (170)
T cd01876 55 YGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK-SELAKALK 133 (170)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh-HHHHHHHH
Confidence 8542 223344445555 3467899999999887777778888888888999999999999744 33333333
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.....+.. ....++++++|++.+ .|+.++.+.+.++
T Consensus 134 ~~~~~l~~--~~~~~~~~~~Sa~~~---------------------------~~~~~l~~~l~~~ 169 (170)
T cd01876 134 EIKKELKL--FEIDPPIILFSSLKG---------------------------QGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHh--ccCCCceEEEecCCC---------------------------CCHHHHHHHHHHh
Confidence 33333332 124578999999886 5777887777664
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=146.64 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=111.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.-..|+|+|.||+|||||.|.|+|.++.+++..+ ||..-...-++... -+++|+|
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e------------------------TQlvf~D 126 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE------------------------TQLVFYD 126 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc------------------------eEEEEec
Confidence 3478999999999999999999999999876554 44432222222111 1589999
Q ss_pred CCCCChhhh--HH------HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh-cCCeEEEEEeCCCCCCChHHHHH
Q 002437 442 TPGTNVILQ--RQ------QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ-WKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 442 TPG~~~~~~--~~------~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~-~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
|||+-+... ++ .+-....+..||+|++|+|++.+-+.-.-.+|+.+.. ...|-|+|+||+|.......+-.
T Consensus 127 TPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~ 206 (379)
T KOG1423|consen 127 TPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLN 206 (379)
T ss_pred CCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhh
Confidence 999854321 11 1123455689999999999996544444456666655 45799999999998866433322
Q ss_pred HHHHH------------HHHHHHhhC----------CCCCeEEEecccchHHhhcccccccccCcccccccCccccccch
Q 002437 513 AISFV------------KENTMKLLN----------IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTF 570 (921)
Q Consensus 513 v~~~~------------~~~~~~~~~----------~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~ 570 (921)
....+ ++.+...-+ ....+||+|||+.| +|+
T Consensus 207 l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G---------------------------~Gi 259 (379)
T KOG1423|consen 207 LKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG---------------------------EGI 259 (379)
T ss_pred hHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccc---------------------------cCH
Confidence 22221 111111100 01456999999988 899
Q ss_pred HHHHHHHHHhhc
Q 002437 571 DKLEKLLYSFLD 582 (921)
Q Consensus 571 ~~L~~~l~~~l~ 582 (921)
++|.++|.....
T Consensus 260 kdlkqyLmsqa~ 271 (379)
T KOG1423|consen 260 KDLKQYLMSQAP 271 (379)
T ss_pred HHHHHHHHhcCC
Confidence 999999987654
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=137.13 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=101.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+|+|+|.+|+|||||+|+|++.++.+ ...||... ....... . ++.. ..+.++|||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~ 57 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVS------------V-RNKE---------VRVNFFDLS 57 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEE------------E-CCeE---------EEEEEEECC
Confidence 379999999999999999999987644 33343321 1110010 0 0110 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--------cCCeEEEEEeCCCCCCCh-HHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--------WKKKVVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--------~~~~vivVlNK~D~~~~~-~~~~~v 513 (921)
|. +....+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+.... ...++.
T Consensus 58 G~----~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 133 (168)
T cd04119 58 GH----PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEG 133 (168)
T ss_pred cc----HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHH
Confidence 97 34456777888999999999999876544433 34444432 347899999999987321 111222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..... . ...++|.+||+.+ .|+.++.+.+.+.+.
T Consensus 134 ~~~~~----~----~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~l~ 167 (168)
T cd04119 134 RLWAE----S----KGFKYFETSACTG---------------------------EGVNEMFQTLFSSIV 167 (168)
T ss_pred HHHHH----H----cCCeEEEEECCCC---------------------------CCHHHHHHHHHHHHh
Confidence 22111 1 1367999999987 688888888776553
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=144.71 Aligned_cols=167 Identities=24% Similarity=0.238 Sum_probs=95.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCC---------CCCcccee-EEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDG---------VVPTTNEI-TFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~---------~~~tT~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
+|+++|++|+|||||+|+|++..-.... ...++... ..-.+.+....+.++..........+.+. ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~---~~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP---KR 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC---Cc
Confidence 4899999999999999999875422210 00011100 00000111111111111111111111111 13
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCCh-HHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~-~~~~~v 513 (921)
.+.|+||||.. ++...+...+..+|++|+|+|+..+........+..+...+ +++|+|+||+|+.... +....+
T Consensus 78 ~~~liDTpG~~----~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i 153 (208)
T cd04166 78 KFIIADTPGHE----QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEI 153 (208)
T ss_pred eEEEEECCcHH----HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHH
Confidence 58999999973 22233556678999999999999887666655555555555 4678899999997532 223344
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...++..+.. ++....+++++||+.+
T Consensus 154 ~~~~~~~~~~-~~~~~~~ii~iSA~~g 179 (208)
T cd04166 154 VADYLAFAAK-LGIEDITFIPISALDG 179 (208)
T ss_pred HHHHHHHHHH-cCCCCceEEEEeCCCC
Confidence 4444433333 3444467999999987
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=137.37 Aligned_cols=145 Identities=20% Similarity=0.341 Sum_probs=96.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|.|..... ..|..+ .+. ...+|||||.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~~v---~~~----------------------------~~~~iDtpG~ 47 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQAV---EFN----------------------------DKGDIDTPGE 47 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccceEE---EEC----------------------------CCCcccCCcc
Confidence 69999999999999999999865211 122111 111 0126999998
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
.....+....+...+..+|++++|+|++.+.+.....++. + ..++|+++++||+|+... +.+.+.+.+ ...
T Consensus 48 ~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~-~-~~~~~ii~v~nK~Dl~~~--~~~~~~~~~----~~~- 118 (158)
T PRK15467 48 YFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLD-I-GVSKRQIAVISKTDMPDA--DVAATRKLL----LET- 118 (158)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHh-c-cCCCCeEEEEEccccCcc--cHHHHHHHH----HHc-
Confidence 6554444444555679999999999998765433322222 2 235789999999998532 223322222 222
Q ss_pred CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 526 NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+. ..|++++||+++ .|++++.+++.+.+.
T Consensus 119 ~~-~~p~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 119 GF-EEPIFELNSHDP---------------------------QSVQQLVDYLASLTK 147 (158)
T ss_pred CC-CCCEEEEECCCc---------------------------cCHHHHHHHHHHhch
Confidence 22 268999999997 789999999888765
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=136.82 Aligned_cols=155 Identities=19% Similarity=0.286 Sum_probs=101.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.+++..+.+.. .++. ....+.+.. ..++.. -.+.++||||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~~~-~~~~~~~~~-----------~~~~~~---------~~~~i~Dt~G 58 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ-LSTY-ALTLYKHNA-----------KFEGKT---------ILVDFWDTAG 58 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCce-eeEEEEEEE-----------EECCEE---------EEEEEEeCCC
Confidence 37999999999999999999987764332 2222 112211110 001110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
. +.+......++..+|++|+|+|.+++.+..+. .++..++.. ..|+++|+||+|+... ..++... +
T Consensus 59 ~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~-----~ 127 (161)
T cd04124 59 Q----ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--VTQKKFN-----F 127 (161)
T ss_pred c----hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh--HHHHHHH-----H
Confidence 6 45566788899999999999999887665543 456666543 6899999999998532 1111111 1
Q ss_pred HHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 522 MKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 128 ~~~---~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 158 (161)
T cd04124 128 AEK---HNLPLYYVSAADG---------------------------TNVVKLFQDAIKLAV 158 (161)
T ss_pred HHH---cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111 2368999999987 678877777765543
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=158.45 Aligned_cols=160 Identities=19% Similarity=0.125 Sum_probs=104.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|+++|.+|||||||||+|++.+....++..||..+........+ ..++|+|||
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~------------------------~~f~laDtP 214 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD------------------------TRFTVADVP 214 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC------------------------eEEEEEECC
Confidence 35799999999999999999999876555666677665543322111 148999999
Q ss_pred CCChhhhH---HHHHHHHhcCCCCEEEEEEeCCCCC----CHHHHHH-HHHhh--------------hcCCeEEEEEeCC
Q 002437 444 GTNVILQR---QQRLTEEFVPRADLVLFVISADRPL----TESEVVF-LRYTQ--------------QWKKKVVFVLNKS 501 (921)
Q Consensus 444 G~~~~~~~---~~~~~~~~l~~aD~il~V~da~~~~----t~~e~~~-l~~l~--------------~~~~~vivVlNK~ 501 (921)
|+...... .......++.++|++|||+|++... ..++.+. ...+. ...+|+++|+||+
T Consensus 215 Gliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKi 294 (500)
T PRK12296 215 GLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKI 294 (500)
T ss_pred CCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECc
Confidence 98422111 1122445678899999999997421 1222221 11221 2358999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 502 DLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 502 D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
|+.... + ..+.+...+.. ...+||++||+++ .|+.+|...|.+.+
T Consensus 295 DL~da~-e---l~e~l~~~l~~----~g~~Vf~ISA~tg---------------------------eGLdEL~~~L~ell 339 (500)
T PRK12296 295 DVPDAR-E---LAEFVRPELEA----RGWPVFEVSAASR---------------------------EGLRELSFALAELV 339 (500)
T ss_pred cchhhH-H---HHHHHHHHHHH----cCCeEEEEECCCC---------------------------CCHHHHHHHHHHHH
Confidence 986432 2 22222222222 2368999999887 68999988888776
Q ss_pred c
Q 002437 582 D 582 (921)
Q Consensus 582 ~ 582 (921)
.
T Consensus 340 ~ 340 (500)
T PRK12296 340 E 340 (500)
T ss_pred H
Confidence 5
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=137.07 Aligned_cols=143 Identities=19% Similarity=0.300 Sum_probs=91.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||++++.+..+... ..++.. .+....+. .++.. ..+.++||
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~-------------~~~~~---------~~l~i~D~ 59 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLE-------------IEGKR---------VKLQIWDT 59 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEE-------------ECCEE---------EEEEEEEC
Confidence 48999999999999999999998765432 222221 11111110 01110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
||. +.....+..++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+....+. .++....
T Consensus 60 ~G~----~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~- 134 (165)
T cd01864 60 AGQ----ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTL- 134 (165)
T ss_pred CCh----HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH-
Confidence 996 44556678888999999999999987654443 45555543 45789999999998754211 1222111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+..+ ...++++||+++
T Consensus 135 ----~~~~~--~~~~~e~Sa~~~ 151 (165)
T cd01864 135 ----AEKNG--MLAVLETSAKES 151 (165)
T ss_pred ----HHHcC--CcEEEEEECCCC
Confidence 11112 257899999987
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=134.93 Aligned_cols=141 Identities=19% Similarity=0.273 Sum_probs=91.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|++++.++. ....||+......... . ++.. ..+.+|||||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~~~i~Dt~G 58 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVV------------I-DGET---------CLLDILDTAG 58 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 68999999999999999999987753 2344554322111000 0 1110 1377899999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
. +++..+...++..+|++++|+|.++..+..+.. ++..+. ..+.|+++|.||+|+........+.....
T Consensus 59 ~----~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-- 132 (162)
T cd04138 59 Q----EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-- 132 (162)
T ss_pred C----cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH--
Confidence 6 345567778899999999999998754444432 333333 24679999999999875322222222221
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ...+++++||+.+
T Consensus 133 --~~----~~~~~~~~Sa~~~ 147 (162)
T cd04138 133 --KS----YGIPYIETSAKTR 147 (162)
T ss_pred --HH----hCCeEEEecCCCC
Confidence 11 1357999999987
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=136.75 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=101.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|.+.++.+. ..||+. .+..... ..++.. ..+.+||||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~-------------~~~~~~---------~~~~l~Dt~ 58 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTV-------------FRNDKR---------VKLQIWDTA 58 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEE-------------EECCEE---------EEEEEEECC
Confidence 6899999999999999999999876432 233332 1111000 001110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. ++.......+++.+|++++|+|.+++.+..+. ++++.+.. ...|+++|+||+|+..... ..++..+
T Consensus 59 g~----~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~--- 131 (165)
T cd01865 59 GQ----ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQ--- 131 (165)
T ss_pred Ch----HHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHH---
Confidence 96 34556678889999999999999876544433 35555543 3578999999999965421 1121111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...+ ..++|++||+.+ .|++++.+.+.+.+.
T Consensus 132 --~~~~~---~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 163 (165)
T cd01865 132 --LADQL---GFEFFEASAKEN---------------------------INVKQVFERLVDIIC 163 (165)
T ss_pred --HHHHc---CCEEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11112 357999999887 688888887766543
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=137.09 Aligned_cols=142 Identities=21% Similarity=0.318 Sum_probs=91.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|.+++.++.. ...+|.. .+....... .+.. ..+.+|||
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~D~ 58 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIEL-------------DGKT---------IKLQIWDT 58 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 3789999999999999999999877543 2333322 111111100 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||. +........+++.+|++|+|+|++++.+..+. .++..+.. .+.|+++|.||+|+..... ..++....
T Consensus 59 ~G~----~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~- 133 (166)
T cd01869 59 AGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF- 133 (166)
T ss_pred CCc----HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH-
Confidence 996 34556678888999999999999876544443 24444443 3579999999999864311 11222111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++++||+.+
T Consensus 134 ----~~~---~~~~~~~~Sa~~~ 149 (166)
T cd01869 134 ----ADE---LGIPFLETSAKNA 149 (166)
T ss_pred ----HHH---cCCeEEEEECCCC
Confidence 111 2468999999987
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=137.98 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=87.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCC-----CCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYL-----KDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~-----~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+|+|+|.+|+|||||+|.|.+.... +....||... +..+.+ ++ ..+.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~---------------~~-----------~~~~l 54 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV---------------GN-----------ARLKF 54 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE---------------CC-----------EEEEE
Confidence 4889999999999999999875321 1111122110 000111 01 25899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
+||||.. .....+..++..+|++++|+|+.++.+..+. .++..+. ..+.|+++|+||+|+... ....++.
T Consensus 55 ~Dt~G~~----~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~-~~~~~~~ 129 (167)
T cd04160 55 WDLGGQE----SLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA-LSVEEIK 129 (167)
T ss_pred EECCCCh----hhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC-CCHHHHH
Confidence 9999974 3445677788999999999999865432222 2333332 246899999999998643 2223333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+..... ..+....+++++||+++
T Consensus 130 ~~~~~~~~-~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 130 EVFQDKAE-EIGRRDCLVLPVSALEG 154 (167)
T ss_pred HHhccccc-cccCCceEEEEeeCCCC
Confidence 33222211 12234568999999987
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=136.13 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=92.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.+++.++.+......+..+....... ++.. ..+.++|||
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~ 61 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-------------DGKQ---------IKLQIWDTA 61 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 479999999999999999999988764432222222221111100 1110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. ++.......+++.+|++|+|+|++++.+..+. .++..++. .+.|+++|.||+|+..... ..++.....
T Consensus 62 G~----~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~- 136 (168)
T cd01866 62 GQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFA- 136 (168)
T ss_pred Cc----HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH-
Confidence 95 44556678888999999999999876555444 35555544 3579999999999874311 122222211
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ....++++||+.+
T Consensus 137 ---~~----~~~~~~e~Sa~~~ 151 (168)
T cd01866 137 ---KE----HGLIFMETSAKTA 151 (168)
T ss_pred ---HH----cCCEEEEEeCCCC
Confidence 11 2467999999886
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=135.49 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=102.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+|+|++|+|||||+|.|++.++.+. ..++.. .+....... ++.. ..+.++|||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D~~ 57 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ-YKSTIGVDFKTKTIEV-------------DGKR---------VKLQIWDTA 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 4799999999999999999998876322 222221 111111110 1111 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. ..+......++..+|++++|+|..++.+.++. .++..+.. .+.|+++|+||+|+..... ..+.+.+..
T Consensus 58 G~----~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~- 132 (164)
T smart00175 58 GQ----ERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA- 132 (164)
T ss_pred Ch----HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH-
Confidence 96 34556778888999999999999887655544 34455433 4589999999999875321 122222221
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.. ..+++++|++.+ .|++++.+.+.+.+.
T Consensus 133 ----~~~---~~~~~e~Sa~~~---------------------------~~i~~l~~~i~~~~~ 162 (164)
T smart00175 133 ----EEH---GLPFFETSAKTN---------------------------TNVEEAFEELAREIL 162 (164)
T ss_pred ----HHc---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 112 357999999886 688888888776553
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=136.39 Aligned_cols=142 Identities=23% Similarity=0.270 Sum_probs=91.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|.+++..+ .....|++.......... ++.. ..+.++|||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~ 58 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEI-------------DGQW---------AILDILDTA 58 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 47899999999999999999998764 334445544221111100 1110 137899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.. +...+...++..+|++++|+|++++.+..+.. ++..+. ..+.|+++|+||+|+..... ..++..+.
T Consensus 59 G~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~- 133 (164)
T cd04145 59 GQE----EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL- 133 (164)
T ss_pred CCc----chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH-
Confidence 973 44556778889999999999998765544432 333333 24679999999999864321 11121111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++++||+.+
T Consensus 134 ---~~~----~~~~~~~~Sa~~~ 149 (164)
T cd04145 134 ---ARK----LKIPYIETSAKDR 149 (164)
T ss_pred ---HHH----cCCcEEEeeCCCC
Confidence 111 2357999999987
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=140.03 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=101.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|.+++.++. ....||+........ ...+|.. ..+.||||||
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~------------i~~~~~~---------~~l~i~Dt~G 58 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPA------------VVLSGRV---------YDLHILDVPN 58 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeE------------EEECCEE---------EEEEEEeCCC
Confidence 37999999999999999999988764 334566532111000 0001211 1478999999
Q ss_pred CChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh------hcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 445 TNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ------QWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 445 ~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~------~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
.... ..+.......++..+|++|+|+|++++.+..... +++.+. ..+.|+++|.||+|+........+.
T Consensus 59 ~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~ 138 (198)
T cd04142 59 MQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHV 138 (198)
T ss_pred cccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHH
Confidence 7432 1222223445678999999999999876555443 334443 2457999999999996431111111
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. .....+. ...++|++||+.+ .|++++.+.+...+..
T Consensus 139 ~---~~~~~~~---~~~~~~e~Sak~g---------------------------~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 139 L---SVLVRKS---WKCGYLECSAKYN---------------------------WHILLLFKELLISATT 175 (198)
T ss_pred H---HHHHHHh---cCCcEEEecCCCC---------------------------CCHHHHHHHHHHHhhc
Confidence 1 1111111 2478999999987 5788877777665543
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=136.72 Aligned_cols=142 Identities=21% Similarity=0.276 Sum_probs=88.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||++.|.+....+....||.. .....+.. .+ ..+.++||||.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g-~~~~~~~~-------------~~-----------~~~~l~Dt~G~ 55 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG-FNVESFEK-------------GN-----------LSFTAFDMSGQ 55 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc-cceEEEEE-------------CC-----------EEEEEEECCCC
Confidence 3789999999999999999987543344445443 11111100 00 14889999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
.+....+..++..+|++|||+|++++.+.... ..+..+ ...+.|+++|+||+|+.... ..+++...+.
T Consensus 56 ----~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~l~ 130 (162)
T cd04157 56 ----GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-TAVKITQLLG 130 (162)
T ss_pred ----HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-CHHHHHHHhC
Confidence 34556677889999999999999876543222 223322 12468999999999987531 1122221111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... .....+++++||+++
T Consensus 131 --~~~~-~~~~~~~~~~Sa~~g 149 (162)
T cd04157 131 --LENI-KDKPWHIFASNALTG 149 (162)
T ss_pred --Cccc-cCceEEEEEeeCCCC
Confidence 0111 112346899999987
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=135.00 Aligned_cols=139 Identities=22% Similarity=0.315 Sum_probs=91.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-ee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||+|+|++..+... ..|+.. .. ..+.+.. .. ..+.++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--------------~~----------~~~~l~D 55 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD-LAATIGVDFKVKTLTVDG--------------KK----------VKLAIWD 55 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cCCcccceEEEEEEEECC--------------EE----------EEEEEEE
Confidence 4799999999999999999998876432 222221 11 1111110 00 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||. +.+......+++.+|++++|+|.+++.+..... ++..+. ..+.|+++|+||+|+.......++....
T Consensus 56 ~~g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~ 131 (161)
T cd01863 56 TAGQ----ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF 131 (161)
T ss_pred CCCc----hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH
Confidence 9996 344555677889999999999998765544432 344343 3457899999999997443233333332
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++++||+.+
T Consensus 132 ~~~--------~~~~~~~~Sa~~~ 147 (161)
T cd01863 132 ARK--------HNMLFIETSAKTR 147 (161)
T ss_pred HHH--------cCCEEEEEecCCC
Confidence 221 2468999999887
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=133.55 Aligned_cols=141 Identities=21% Similarity=0.343 Sum_probs=91.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|.+....+. ..+|+.. ........ ++.. ..+.++|+|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D~~ 57 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEI-------------DGKT---------VKLQIWDTA 57 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEE-------------CCEE---------EEEEEEecC
Confidence 4799999999999999999999876544 2222221 11111110 0100 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc---CCeEEEEEeCCCCCCCh-HHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW---KKKVVFVLNKSDLYQNA-FELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~---~~~vivVlNK~D~~~~~-~~~~~v~~~~~ 518 (921)
|. ..+......++..+|++++|+|++++.+.... .++..+... ..|+++|+||+|..... ...+++.+...
T Consensus 58 g~----~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 133 (159)
T cd00154 58 GQ----ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK 133 (159)
T ss_pred Ch----HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH
Confidence 96 44556778888999999999999875433332 345555443 48999999999996221 12222222221
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ...+++.+||+.+
T Consensus 134 ----~----~~~~~~~~sa~~~ 147 (159)
T cd00154 134 ----E----NGLLFFETSAKTG 147 (159)
T ss_pred ----H----cCCeEEEEecCCC
Confidence 1 3478999999886
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=136.17 Aligned_cols=144 Identities=20% Similarity=0.298 Sum_probs=91.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|+|.+..+. ...||.. +...... .++ ..+.++|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~~t~g-~~~~~~~-------------~~~-----------~~l~l~D 64 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID--TISPTLG-FQIKTLE-------------YEG-----------YKLNIWD 64 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC--CcCCccc-cceEEEE-------------ECC-----------EEEEEEE
Confidence 35689999999999999999999987542 2333332 1110000 001 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||.. .....+..++..+|++++|+|++++.+..+. .++..+ ...+.|+++|+||+|+.... ..+++...
T Consensus 65 ~~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~ 139 (173)
T cd04154 65 VGGQK----TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREA 139 (173)
T ss_pred CCCCH----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHH
Confidence 99973 3445677889999999999999876443332 233332 22568999999999987531 22222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... . ......+++++||+++
T Consensus 140 ~~~~--~-~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 140 LELD--K-ISSHHWRIQPCSAVTG 160 (173)
T ss_pred hCcc--c-cCCCceEEEeccCCCC
Confidence 1100 0 1123568999999987
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=136.05 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=90.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|.+++..+. ....||+......... . ++.. ..+.++||||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~G 58 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVIS------------C-SKNI---------CTLQITDTTG 58 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheEEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 68999999999999999999988763 2334443321111000 0 0110 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
.. ++..+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+....+ ..++...
T Consensus 59 ~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~- 133 (165)
T cd04140 59 SH----QFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA- 133 (165)
T ss_pred CC----cchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-
Confidence 74 3445566778899999999999987665543 34444432 4579999999999965311 0111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.... ...+++++||+.+
T Consensus 134 ----~~~~---~~~~~~e~SA~~g 150 (165)
T cd04140 134 ----CATE---WNCAFMETSAKTN 150 (165)
T ss_pred ----HHHH---hCCcEEEeecCCC
Confidence 1111 2367899999987
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-13 Score=135.64 Aligned_cols=157 Identities=19% Similarity=0.225 Sum_probs=99.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++..+.+. ..++.. .+...... .+.+. ..+.++|||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~------------~~~~~----------~~~~~~D~~ 57 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVT------------VDDKL----------VTLQIWDTA 57 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCccceEEEEEEEE------------ECCEE----------EEEEEEeCC
Confidence 4799999999999999999999875432 222211 11111000 00111 137899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHH----hh---hcCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRY----TQ---QWKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~----l~---~~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|. +.+......+++.+|++|+|+|++++.+..+.. +... +. ..+.|+++|+||+|+..+.. ..++..
T Consensus 58 g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 133 (172)
T cd01862 58 GQ----ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQ 133 (172)
T ss_pred Ch----HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHH
Confidence 96 345556778899999999999998765544332 2222 22 12679999999999974211 122222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... .. .+ ..+++++|++++ .|+..+.+.+.+.+.
T Consensus 134 ~~~----~~-~~--~~~~~~~Sa~~~---------------------------~gv~~l~~~i~~~~~ 167 (172)
T cd01862 134 QWC----QS-NG--NIPYFETSAKEA---------------------------INVEQAFETIARKAL 167 (172)
T ss_pred HHH----HH-cC--CceEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 11 11 368999999987 688888888776654
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=135.78 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=101.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.++|+++|.+|+|||||+|++.+.++.+ ...||+.. . ..+.+ ++.. ..+.++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~---------------~~~~---------~~l~l~ 57 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIEL---------------DGKK---------IKLQIW 57 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEE---------------CCEE---------EEEEEE
Confidence 5799999999999999999999887643 33443321 1 11111 1110 147899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||. +........+++.+|++|+|+|++++.+..+. +++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 58 D~~g~----~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T cd01867 58 DTAGQ----ERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEA 133 (167)
T ss_pred eCCch----HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHH
Confidence 99996 34455677888999999999999876555443 34444443 3579999999999974311 1122211
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
. ... ...+++++||+.+ .|+.++...+.+.+
T Consensus 134 ~----~~~----~~~~~~~~Sa~~~---------------------------~~v~~~~~~i~~~~ 164 (167)
T cd01867 134 L----ADE----YGIKFLETSAKAN---------------------------INVEEAFFTLAKDI 164 (167)
T ss_pred H----HHH----cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHH
Confidence 1 111 2367999999987 67888777776554
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=141.96 Aligned_cols=146 Identities=20% Similarity=0.311 Sum_probs=107.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhh----------------------c----
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQ----------------------R---- 416 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~----------------------~---- 416 (921)
..|.|+|+|+.|+||||++++|.|..++|.+...+|.+++.+........... .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 56799999999999999999999998888888888888888765433211000 0
Q ss_pred --ccccCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcC-CCCEEEEEEeCCCCCCHHH-HHH
Q 002437 417 --CERHPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVP-RADLVLFVISADRPLTESE-VVF 483 (921)
Q Consensus 417 --~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~-~aD~il~V~da~~~~t~~e-~~~ 483 (921)
.....+..+...+..|...+++||||||+... .....+++..|+. ..++|++|+|+....+.++ .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 00111222344455666678999999999532 1234567888887 5679999999987776666 688
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChH
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~ 508 (921)
.+.+...+.|+++|+||+|......
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~~~ 209 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEGT 209 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCccH
Confidence 8889889999999999999986543
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=136.14 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=100.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|++.+..+. ....||+......... .++.. ..+.++||||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~g 57 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV-DDYDPTIEDSYRKQIE-------------IDGEV---------CLLDILDTAG 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-cccCCchhhhEEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 47999999999999999999987754 3344444322111100 01110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
.. ++......++..+|++++|+|++++.+..+.. +...+. ....|+++|.||+|+..... ..+.....
T Consensus 58 ~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~-- 131 (164)
T smart00173 58 QE----EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKEL-- 131 (164)
T ss_pred cc----cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHH--
Confidence 74 34456677889999999999998765544432 223332 23579999999999875311 11111111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.... ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 132 ---~~~~---~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~~~ 162 (164)
T smart00173 132 ---ARQW---GCPFLETSAKER---------------------------VNVDEAFYDLVREIR 162 (164)
T ss_pred ---HHHc---CCEEEEeecCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1111 368999999987 688888877766543
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=134.24 Aligned_cols=157 Identities=24% Similarity=0.274 Sum_probs=99.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|.+..+... ..+++...+ ..... .... ..+.+|||||.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~-~~~~~------------~~~~----------~~~~i~Dt~G~ 57 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEIT-IPADV------------TPER----------VPTTIVDTSSR 57 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceE-eeeee------------cCCe----------EEEEEEeCCCc
Confidence 689999999999999999998776422 222221111 10000 0011 14889999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHH--HHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFE--LEEAISFVKE 519 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~--~~~v~~~~~~ 519 (921)
. .....+..++..+|++++|+|.+++.+..+. .++..++. .+.|+++|+||+|+.+.... .++....+..
T Consensus 58 ~----~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~ 133 (166)
T cd01893 58 P----QDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN 133 (166)
T ss_pred h----hhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHH
Confidence 4 2334456677999999999999987766653 34444443 36899999999999754221 1221222222
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+. . ..+++.+||+++ .|++++...+...+.
T Consensus 134 ~~~---~--~~~~~e~Sa~~~---------------------------~~v~~lf~~~~~~~~ 164 (166)
T cd01893 134 EFR---E--IETCVECSAKTL---------------------------INVSEVFYYAQKAVL 164 (166)
T ss_pred HHh---c--ccEEEEeccccc---------------------------cCHHHHHHHHHHHhc
Confidence 211 1 137999999987 678888877776654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=134.92 Aligned_cols=142 Identities=22% Similarity=0.272 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|.|++.++.+......+.......... ++.. ..+.++||||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~l~l~D~~G 58 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-------------GGKR---------VKLQIWDTAG 58 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-------------CCEE---------EEEEEEECcc
Confidence 47999999999999999999988764432221111111111100 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCChH-HHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNAF-ELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~~ 519 (921)
. +.+......+++.+|++++|+|.+++.+..+. .++..+. ..+.|+++|+||+|+..... ..+++.....
T Consensus 59 ~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~- 133 (161)
T cd04113 59 Q----ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ- 133 (161)
T ss_pred h----HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH-
Confidence 6 34455677888999999999999987655553 3444443 34679999999999874311 1122222211
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ...+++.+||+.+
T Consensus 134 ----~---~~~~~~~~Sa~~~ 147 (161)
T cd04113 134 ----E---NGLLFLETSALTG 147 (161)
T ss_pred ----H---cCCEEEEEECCCC
Confidence 1 2378999999887
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=139.02 Aligned_cols=142 Identities=28% Similarity=0.283 Sum_probs=86.0
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
++|.+|+|||||+|+|.+.+.......++|..+........ ++ ..+.++||||+...
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~------------~~-----------~~~~i~DtpG~~~~ 57 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP------------DG-----------ARIQVADIPGLIEG 57 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC------------CC-----------CeEEEEeccccchh
Confidence 58999999999999999987633334445543322111100 01 25899999998432
Q ss_pred hhHH---HHHHHHhcCCCCEEEEEEeCCCCC------CHHHHH-HHHHhhh----------cCCeEEEEEeCCCCCCChH
Q 002437 449 LQRQ---QRLTEEFVPRADLVLFVISADRPL------TESEVV-FLRYTQQ----------WKKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 449 ~~~~---~~~~~~~l~~aD~il~V~da~~~~------t~~e~~-~l~~l~~----------~~~~vivVlNK~D~~~~~~ 508 (921)
.... ......++..+|++++|+|+.++. +..+.. +...+.. .+.|+++|+||+|+....
T Consensus 58 ~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~- 136 (176)
T cd01881 58 ASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE- 136 (176)
T ss_pred hhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-
Confidence 1111 112345567899999999998763 333322 2223321 368999999999997542
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...... ..........+++++||+.+
T Consensus 137 ~~~~~~------~~~~~~~~~~~~~~~Sa~~~ 162 (176)
T cd01881 137 ELEEEL------VRELALEEGAEVVPISAKTE 162 (176)
T ss_pred HHHHHH------HHHHhcCCCCCEEEEehhhh
Confidence 222211 11112224567999999887
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=139.89 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=102.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|.+|+|||||+|.|++..+......+|+........- ..+|.. ..+.+|||||
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~---------~~l~i~D~~G 59 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRM------------VVGERV---------VTLGIWDTAG 59 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEE------------EECCEE---------EEEEEEECCC
Confidence 3799999999999999999998876543344444321111000 001111 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHH-HHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAI-SFVKEN 520 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~-~~~~~~ 520 (921)
. ++...+...++..+|++|+|+|.+++.+..+. .++..+... +.|+++|.||+|+.........+. ..+..
T Consensus 60 ~----~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~- 134 (193)
T cd04118 60 S----ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD- 134 (193)
T ss_pred c----hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH-
Confidence 6 34445566788899999999999876554443 356655543 579999999999864321111110 11111
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 135 ~~~~---~~~~~~~~Sa~~~---------------------------~gv~~l~~~i~~~~~ 166 (193)
T cd04118 135 FADE---IKAQHFETSSKTG---------------------------QNVDELFQKVAEDFV 166 (193)
T ss_pred HHHH---cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1111 2367999999987 678888777766554
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=159.44 Aligned_cols=147 Identities=21% Similarity=0.301 Sum_probs=98.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC--CCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY--LKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~--~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+.|+++|.+++|||||+|+|+|... .+.... ..|..+....+. ++. ..+.+||
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~---------------------~~~---~~v~~iD 56 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFP---------------------LPD---YRLGFID 56 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEE---------------------eCC---EEEEEEE
Confidence 3689999999999999999998542 111111 122222111111 000 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||. +.+...+..++..+|++++|+|++++...+..+.+..+...+.| +++|+||+|+... +..+.+.+.+.+.
T Consensus 57 tPGh----e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~-~~~~~~~~ei~~~ 131 (581)
T TIGR00475 57 VPGH----EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE-EEIKRTEMFMKQI 131 (581)
T ss_pred CCCH----HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH-HHHHHHHHHHHHH
Confidence 9996 34445566778899999999999987767777777667667777 9999999999843 3444444455444
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.........+++++||+++
T Consensus 132 l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 132 LNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred HHHhCCCCCCcEEEEeCCCC
Confidence 44331112578999999987
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-13 Score=139.14 Aligned_cols=114 Identities=22% Similarity=0.188 Sum_probs=85.3
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+.++++||||.. .+...+...+ ..+|++++|+|++.+.+..+.+++..+...+.|+++|+||+|+.. .+....
T Consensus 84 ~~i~liDtpG~~----~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~-~~~~~~ 158 (224)
T cd04165 84 KLVTFIDLAGHE----RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP-ANILQE 158 (224)
T ss_pred cEEEEEECCCcH----HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC-HHHHHH
Confidence 358999999973 3323334444 379999999999999999999999999999999999999999874 345566
Q ss_pred HHHHHHHHHHHh----------------------hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccch
Q 002437 513 AISFVKENTMKL----------------------LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTF 570 (921)
Q Consensus 513 v~~~~~~~~~~~----------------------~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~ 570 (921)
..+.+.+.+... .....+|||++||.++ .|+
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg---------------------------~Gi 211 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG---------------------------EGL 211 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc---------------------------cCH
Confidence 666665554310 0112468999999987 799
Q ss_pred HHHHHHHHHh
Q 002437 571 DKLEKLLYSF 580 (921)
Q Consensus 571 ~~L~~~l~~~ 580 (921)
+.|.++|...
T Consensus 212 ~~L~~~L~~l 221 (224)
T cd04165 212 DLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHhc
Confidence 9999888653
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=138.32 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=103.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee-EE--EEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI-TF--LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~-~~--~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||++.+.+.++......+|+... .. +.+ ++.. -.+.|||
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~---------~~~~i~D 56 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV---------------DGVK---------VKLQIWD 56 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE---------------CCEE---------EEEEEEe
Confidence 4799999999999999999998876544444444311 11 111 1110 1488999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||. .+.......++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 57 t~G~----~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~- 131 (191)
T cd04112 57 TAGQ----ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGER- 131 (191)
T ss_pred CCCc----HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHH-
Confidence 9996 44555677888999999999999876554433 24444443 3579999999999864211 1111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+... ...+++++||+.+ .|+.++...+.+.+.+
T Consensus 132 ----l~~~---~~~~~~e~Sa~~~---------------------------~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 132 ----LAKE---YGVPFMETSAKTG---------------------------LNVELAFTAVAKELKH 164 (191)
T ss_pred ----HHHH---cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 1111 2368999999987 5788888888766654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-13 Score=132.46 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=90.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+|+|++|+|||||+|+|++.++.+ ...+++.. + ..+.+.. .. -.+.+||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~--------------~~----------~~~~i~D 56 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDD--------------TT----------VKFEIWD 56 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECC--------------EE----------EEEEEEe
Confidence 689999999999999999999988754 22333321 1 1111111 00 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
|||. ++.......+++.+|++++|+|++++.+.... .++..+.. ...|+++|+||+|+.... ...++....
T Consensus 57 ~~G~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 132 (163)
T cd01860 57 TAGQ----ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEY 132 (163)
T ss_pred CCch----HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHH
Confidence 9995 34455667788999999999999876544333 34455543 347899999999987321 122222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. . ...+++++||+++
T Consensus 133 ~~----~----~~~~~~~~Sa~~~ 148 (163)
T cd01860 133 AD----E----NGLLFFETSAKTG 148 (163)
T ss_pred HH----H----cCCEEEEEECCCC
Confidence 11 1 1367999999987
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=135.26 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=90.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.++...+ +....||+......... . ++.. ..+.++||||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~G 58 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVE------------V-DGQQ---------CMLEILDTAG 58 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 6899999999999999999996654 33445555432111110 0 1110 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
. ++...+...+++.+|++++|+|.+++.+..+. +++..+. ..+.|+++|.||+|+..... ..++. ..
T Consensus 59 ~----~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~-- 131 (164)
T cd04175 59 T----EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QN-- 131 (164)
T ss_pred c----ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HH--
Confidence 7 34556677788999999999999876554443 2444443 24579999999999964311 11111 11
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.+ ..+++++||+++
T Consensus 132 --~~~~~---~~~~~~~Sa~~~ 148 (164)
T cd04175 132 --LARQW---GCAFLETSAKAK 148 (164)
T ss_pred --HHHHh---CCEEEEeeCCCC
Confidence 11112 368999999987
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-13 Score=131.46 Aligned_cols=140 Identities=19% Similarity=0.325 Sum_probs=87.9
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
|+++|++|+|||||+|+|.+.++.+ ...||+. +...... .+. ..+.++||||.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~-~~~~~~~--------------~~~----------~~~~~~D~~g~- 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVG-FNMRKVT--------------KGN----------VTLKVWDLGGQ- 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCC-cceEEEE--------------ECC----------EEEEEEECCCC-
Confidence 7899999999999999999987643 2333332 1111110 011 14899999996
Q ss_pred hhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 447 VILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 447 ~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
..+...+..++..+|++++|+|++.+.+... ...+..+. ..+.|+++|+||+|+... ....++...+. +
T Consensus 55 ---~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~-~~~~~~~~~~~--~ 128 (159)
T cd04159 55 ---PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA-LSVDELIEQMN--L 128 (159)
T ss_pred ---HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-cCHHHHHHHhC--c
Confidence 3455667888999999999999986433222 12333322 246799999999998754 22222222211 0
Q ss_pred HHhhCCCCCeEEEecccch
Q 002437 522 MKLLNIENVTIYPVSARST 540 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~ 540 (921)
. .......+++++|++++
T Consensus 129 ~-~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 129 K-SITDREVSCYSISCKEK 146 (159)
T ss_pred c-cccCCceEEEEEEeccC
Confidence 1 11123467899999887
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=165.26 Aligned_cols=142 Identities=29% Similarity=0.325 Sum_probs=98.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|+|+|.+....+..| +|.......... ++ ..+.+|||
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-------------~~-----------~~~~liDT 330 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-------------AG-----------TDFKLVDT 330 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-------------CC-----------EEEEEEeC
Confidence 368999999999999999999998754433333 333322211110 11 24889999
Q ss_pred CCCCh----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNV----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+.. ........+..++..+|++|||+|+.++++..+..+...++..++|+++|+||+|+...... ..+
T Consensus 331 ~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~---~~~--- 404 (712)
T PRK09518 331 GGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD---AAE--- 404 (712)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh---HHH---
Confidence 99853 12234455667889999999999999888888888888888899999999999998643211 111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.. ++ ...+|++||+.+
T Consensus 405 --~~~-lg--~~~~~~iSA~~g 421 (712)
T PRK09518 405 --FWK-LG--LGEPYPISAMHG 421 (712)
T ss_pred --HHH-cC--CCCeEEEECCCC
Confidence 111 12 234689999987
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-13 Score=132.30 Aligned_cols=140 Identities=17% Similarity=0.228 Sum_probs=87.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||++.+....+. ...||+.. +..+.+. . ..+.++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~~~~~~----------------~----------~~~~l~D~~ 52 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYK----------------N----------ISFTVWDVG 52 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceEEEEEC----------------C----------EEEEEEECC
Confidence 47999999999999999999765543 24444431 1111110 0 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|.. +....+..++..+|++|||+|+++..+..+. +++..+ .. ...|+++|+||+|+.... ..+++...+.
T Consensus 53 G~~----~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~ 127 (159)
T cd04150 53 GQD----KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM-SAAEVTDKLG 127 (159)
T ss_pred CCH----hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC-CHHHHHHHhC
Confidence 973 4556678889999999999999875433322 233333 22 357999999999986431 1122222211
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+ ..+......++++||+++
T Consensus 128 --~-~~~~~~~~~~~~~Sak~g 146 (159)
T cd04150 128 --L-HSLRNRNWYIQATCATSG 146 (159)
T ss_pred --c-cccCCCCEEEEEeeCCCC
Confidence 0 111123446788999998
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-13 Score=132.65 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=89.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|++++.+. ....+|+. +....... .+ ..+.++||||.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~~t~~-~~~~~~~~-------------~~-----------~~~~i~D~~G~ 53 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTIPTIG-FNVETVEY-------------KN-----------VSFTVWDVGGQ 53 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcC-cceEEEEE-------------CC-----------EEEEEEECCCC
Confidence 489999999999999999999873 22223222 11111100 00 14899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. .+......++..+|++++|+|+.++.+..+. ..+..+. ..+.|+++|+||+|+... ...+++...+...
T Consensus 54 ~----~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~ 128 (158)
T cd00878 54 D----KIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA-LSVSELIEKLGLE 128 (158)
T ss_pred h----hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc-cCHHHHHHhhChh
Confidence 3 3455677788999999999999976433332 2333322 346899999999998754 2223333222211
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ......+++++||+++
T Consensus 129 ~---~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 129 K---ILGRRWHIQPCSAVTG 145 (158)
T ss_pred h---ccCCcEEEEEeeCCCC
Confidence 0 1223568999999987
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=133.39 Aligned_cols=143 Identities=21% Similarity=0.260 Sum_probs=90.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.+++..+.. ...||... +........ ..... ..+.++|||
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----------~~~~~----------~~~~i~D~~ 59 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLR----------QSDED----------VRLMLWDTA 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEc----------CCCCE----------EEEEEeeCC
Confidence 379999999999999999999876542 33333321 110000000 00111 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~~~ 519 (921)
|. +++......+++.+|++++|+|.+++.+..... ++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 60 G~----~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~---- 131 (162)
T cd04106 60 GQ----EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEA---- 131 (162)
T ss_pred ch----HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHH----
Confidence 96 455667788899999999999998765544432 4444433 3679999999999875311 1112111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+.+ ..+++++||+.+
T Consensus 132 -~~~~~---~~~~~~~Sa~~~ 148 (162)
T cd04106 132 -LAKRL---QLPLFRTSVKDD 148 (162)
T ss_pred -HHHHc---CCeEEEEECCCC
Confidence 11222 358999999886
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-13 Score=132.37 Aligned_cols=154 Identities=22% Similarity=0.249 Sum_probs=98.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+|+|.+|+|||||+|.|++..+.+.. .+++ .......+.. .+.. ..+.++|||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D~~ 57 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQKTVNI-------------GGKR---------IDLAIWDTA 57 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 47999999999999999999988765432 2232 2221111110 0110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. .........++..+|++++|+|.+++.+.+... ++..+.. .+.|+++|+||+|+..... ..+++.+..
T Consensus 58 g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~- 132 (162)
T cd04123 58 GQ----ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYA- 132 (162)
T ss_pred ch----HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH-
Confidence 96 334456677789999999999998765544442 3344432 3579999999999874311 111111111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.. ...+++++|++++ .|++++.+.+.+.
T Consensus 133 ----~~---~~~~~~~~s~~~~---------------------------~gi~~~~~~l~~~ 160 (162)
T cd04123 133 ----KS---VGAKHFETSAKTG---------------------------KGIEELFLSLAKR 160 (162)
T ss_pred ----HH---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHH
Confidence 11 2467899999886 6888888777654
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-13 Score=132.13 Aligned_cols=141 Identities=23% Similarity=0.318 Sum_probs=92.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||++.+.+..+.+ ...+|+. .+...... .++.. ..+.++|||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~ 59 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIE-------------VNGQK---------IKLQIWDTA 59 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCcccceeEEEEEEE-------------ECCEE---------EEEEEEECC
Confidence 689999999999999999999887643 2333332 11111000 01110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. +++......+++.+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+..... ..++..+..
T Consensus 60 G~----~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~- 134 (166)
T cd04122 60 GQ----ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA- 134 (166)
T ss_pred Cc----HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH-
Confidence 96 45566678889999999999999987655544 34444432 3568999999999865421 112222211
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ...+++.+||+++
T Consensus 135 ---~~----~~~~~~e~Sa~~~ 149 (166)
T cd04122 135 ---DE----NGLLFLECSAKTG 149 (166)
T ss_pred ---HH----cCCEEEEEECCCC
Confidence 11 2468999999987
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=136.04 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=90.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|.|.+..+.. ..||.. ++...... .+ ..+.++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~~~D 67 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ--HQPTQH-PTSEELAI-------------GN-----------IKFTTFD 67 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc--cCCccc-cceEEEEE-------------CC-----------EEEEEEE
Confidence 346899999999999999999999976532 233321 11111100 01 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||.. ........++..+|+++||+|++++.+..+. ..+..+. ..+.|+++|+||+|+... -..+++.+.
T Consensus 68 ~~G~~----~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-~~~~~i~~~ 142 (184)
T smart00178 68 LGGHQ----QARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA-ASEDELRYA 142 (184)
T ss_pred CCCCH----HHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-CCHHHHHHH
Confidence 99973 3455677889999999999999876432222 2333332 246899999999998643 112333332
Q ss_pred HHHHHHHh------hCCCCCeEEEecccch
Q 002437 517 VKENTMKL------LNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~------~~~~~~~v~~vSA~~~ 540 (921)
+. +... .+.....|+++||+++
T Consensus 143 l~--l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 143 LG--LTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred cC--CCcccccccccCCceeEEEEeecccC
Confidence 21 0010 0113457999999987
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-13 Score=132.66 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=85.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+++|||||++.|....+. ...||.. ....... . .+ ..+.++||||.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~t~~-~~~~~~~------------~-~~-----------~~~~i~Dt~G~ 53 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIPTIG-FNVETVT------------Y-KN-----------LKFQVWDLGGQ 53 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCCccC-cCeEEEE------------E-CC-----------EEEEEEECCCC
Confidence 4889999999999999999776543 2233321 1111000 0 00 14899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH--HHHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESE--VVFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e--~~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. .+...+..++..+|++|+|+|++++.+... ..+...++. .+.|+++|+||+|+.... ...++...+..
T Consensus 54 ~----~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~- 127 (158)
T cd04151 54 T----SIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-SEAEISEKLGL- 127 (158)
T ss_pred H----HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-CHHHHHHHhCc-
Confidence 3 344567788999999999999987533221 222222222 468999999999987432 11222221110
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
........+++++||+++
T Consensus 128 --~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 128 --SELKDRTWSIFKTSAIKG 145 (158)
T ss_pred --cccCCCcEEEEEeeccCC
Confidence 011112357999999987
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-13 Score=135.38 Aligned_cols=162 Identities=18% Similarity=0.215 Sum_probs=101.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||++++.+..+.. ..||+. ......... .++.- ..+.++||
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~------------~~~~~---------~~l~l~Dt 59 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSL------------GNSKG---------ITFHFWDV 59 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeec------------cCCCc---------eEEEEEEC
Confidence 4789999999999999999999876542 234332 111111110 01000 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||. +.+...+..++..+|++|+|+|++++.+..+.. ++..+ ...+.|+++|+||+|+.... ..+++...+
T Consensus 60 ~G~----~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~-~~~~~~~~~ 134 (183)
T cd04152 60 GGQ----EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL-SVSEVEKLL 134 (183)
T ss_pred CCc----HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC-CHHHHHHHh
Confidence 996 344556778889999999999998764333321 23222 23568999999999986421 112221111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. +.........+++++||+.+ .|++++...|.+.+.
T Consensus 135 ~--~~~~~~~~~~~~~~~SA~~~---------------------------~gi~~l~~~l~~~l~ 170 (183)
T cd04152 135 A--LHELSASTPWHVQPACAIIG---------------------------EGLQEGLEKLYEMIL 170 (183)
T ss_pred C--ccccCCCCceEEEEeecccC---------------------------CCHHHHHHHHHHHHH
Confidence 1 11111112356899999987 688888888877664
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-13 Score=157.22 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC--CCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY--LKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~--~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+.|+++|+.++|||||+|+|+|.+. .+... ...|.......+. .+++ +.+.|||
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~------------~~~g-----------~~i~~ID 57 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWP------------QPDG-----------RVLGFID 57 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEe------------cCCC-----------cEEEEEE
Confidence 3689999999999999999998542 11111 1222221111110 0111 2478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||. +.+...+...+..+|++++|+|++.+...+..+.+..+...+.| +++|+||+|+.. ++.++.+.+.+.+.
T Consensus 58 tPGh----e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-~~~~~~v~~ei~~~ 132 (614)
T PRK10512 58 VPGH----EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-EARIAEVRRQVKAV 132 (614)
T ss_pred CCCH----HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-HHHHHHHHHHHHHH
Confidence 9997 34444566667899999999999998888888888877777766 679999999974 34455555555554
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... +....+++++||+++
T Consensus 133 l~~~-~~~~~~ii~VSA~tG 151 (614)
T PRK10512 133 LREY-GFAEAKLFVTAATEG 151 (614)
T ss_pred HHhc-CCCCCcEEEEeCCCC
Confidence 4332 334578999999987
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-13 Score=133.87 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.+++..+.+ ...||+......... .+|.. ..+.|+||||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~G 58 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIE-------------VDSSP---------SVLEILDTAG 58 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 689999999999999999999876643 334444322111110 01110 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
.. +...+...++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..... ...+.
T Consensus 59 ~~----~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~----- 129 (163)
T cd04176 59 TE----QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG----- 129 (163)
T ss_pred cc----cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-----
Confidence 63 3445677788999999999999876554443 34444433 4689999999999864311 11111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+.... ..+++++||+++
T Consensus 130 ~~~~~~~---~~~~~~~Sa~~~ 148 (163)
T cd04176 130 RALAEEW---GCPFMETSAKSK 148 (163)
T ss_pred HHHHHHh---CCEEEEecCCCC
Confidence 1111212 357999999887
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=128.12 Aligned_cols=141 Identities=26% Similarity=0.342 Sum_probs=100.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|+++||||||+++|.|.+... .-|..+. |. =.+|||||-
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~----~KTq~i~---~~-----------------------------~~~IDTPGE 46 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY----KKTQAIE---YY-----------------------------DNTIDTPGE 46 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc----CccceeE---ec-----------------------------ccEEECChh
Confidence 69999999999999999999976421 1222211 11 245999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
.--.+.+-........+||+|++|.|++.+...---.|.. ...+|+|-|+||+|+..++.+++...++++..
T Consensus 47 yiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~---~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a----- 118 (143)
T PF10662_consen 47 YIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFAS---MFNKPVIGVITKIDLPSDDANIERAKKWLKNA----- 118 (143)
T ss_pred heeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhc---ccCCCEEEEEECccCccchhhHHHHHHHHHHc-----
Confidence 5445555556666668999999999999764322222332 24589999999999996666666666665542
Q ss_pred CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 526 NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
+.. .||.+|+.++ .|+++|.++|.+
T Consensus 119 G~~--~if~vS~~~~---------------------------eGi~eL~~~L~~ 143 (143)
T PF10662_consen 119 GVK--EIFEVSAVTG---------------------------EGIEELKDYLEE 143 (143)
T ss_pred CCC--CeEEEECCCC---------------------------cCHHHHHHHHhC
Confidence 433 5799999887 799999998864
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=152.96 Aligned_cols=168 Identities=20% Similarity=0.120 Sum_probs=104.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|++++|||||+|+|++......+.... ... ..+....+..+......... .+.. --..+.|+|
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~--~~~---~~d~~~~e~~rg~T~~~~~~--~~~~-~~~~~~~iD 81 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAK--KYD---EIDSAPEEKARGITINTAHV--EYET-ENRHYAHVD 81 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCcccccccc--ccc---cccCChhhhcCCEeEEccEE--EEcc-CCeEEEEEE
Confidence 456889999999999999999999753211100000 000 00000011111111111111 1110 013589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.. .+...+...+..+|++++|+|+..+...+..+.+..+...+.| +|+++||+|+...++..+.+.+.+...
T Consensus 82 tPGh~----~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 82 CPGHA----DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred CCChH----HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 99963 3444455667899999999999998888888888888888888 778999999985433344444555555
Q ss_pred HHHhhC-CCCCeEEEecccchH
Q 002437 521 TMKLLN-IENVTIYPVSARSTL 541 (921)
Q Consensus 521 ~~~~~~-~~~~~v~~vSA~~~l 541 (921)
+..... ....+++++||..+.
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcc
Confidence 554321 124789999999884
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=134.51 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=98.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+++|||||+|+|.+..+. ...||+. +....+.. .+ ..+.++||||.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~~~T~~-~~~~~~~~-------------~~-----------~~i~l~Dt~G~ 53 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QPIPTIG-FNVETVEY-------------KN-----------LKFTIWDVGGK 53 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCc-eeEEEEEE-------------CC-----------EEEEEEECCCC
Confidence 4789999999999999999987542 3444432 11111100 00 14899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. +....+..++..+|+++||+|.+++.+..+. .++..+.. .+.|+++|+||+|+... ...+++...+.
T Consensus 54 ~----~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~-- 126 (169)
T cd04158 54 H----KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEEMTELLS-- 126 (169)
T ss_pred h----hcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHHHHHHhC--
Confidence 3 3445677788999999999999876444333 33443322 24799999999998643 12222222211
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...........++++||+++ .|++++..+|.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~g---------------------------~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 127 LHKLCCGRSWYIQGCDARSG---------------------------MGLYEGLDWLSRQLVA 162 (169)
T ss_pred CccccCCCcEEEEeCcCCCC---------------------------CCHHHHHHHHHHHHhh
Confidence 11110111236788999987 6888888888766553
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=132.23 Aligned_cols=141 Identities=19% Similarity=0.263 Sum_probs=87.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|.+|+|||||+|.+.+.++.. ..||... +..+.. .+. ..+.++||||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~~t~~~~~~~~~~---------------~~~----------~~l~i~D~~G 53 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--TIPTVGFNVEMLQL---------------EKH----------LSLTVWDVGG 53 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--ccCccCcceEEEEe---------------CCc----------eEEEEEECCC
Confidence 47899999999999999999987642 2333321 111110 011 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.. .....+..++..+|++|||+|++++.+..+. .++..+ +. .+.|+++|+||+|+.... ..+++...+.
T Consensus 54 ~~----~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~- 127 (160)
T cd04156 54 QE----KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-TAEEITRRFK- 127 (160)
T ss_pred CH----hHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-CHHHHHHHcC-
Confidence 73 4445667788999999999999876543332 223332 21 468999999999986431 1122222111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+......+++++||+.+
T Consensus 128 -~~~~~~~~~~~~~~~Sa~~~ 147 (160)
T cd04156 128 -LKKYCSDRDWYVQPCSAVTG 147 (160)
T ss_pred -CcccCCCCcEEEEecccccC
Confidence 11111112357999999987
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.5e-13 Score=150.11 Aligned_cols=191 Identities=18% Similarity=0.157 Sum_probs=112.9
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....++|+++|+.++|||||+++|++.... .+.... ......+....+..+......... .++. --+.+.||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~-~g~~~~----~~~~~~d~~~~E~~rg~T~~~~~~--~~~~-~~~~i~~i 80 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE-RGLNQA----KDYDSIDAAPEEKERGITINTAHV--EYET-EKRHYAHV 80 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh-hccccc----cchhhhcCCHHHHhcCccEEEEee--EecC-CCcEEEEE
Confidence 346789999999999999999999963210 000000 000000000111111111111000 0100 01358999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||||.. ++...+...+..+|++++|+|+..+...+..+.+..+...+.| +|+|+||+|+..+++..+.+.+.+..
T Consensus 81 DtPGh~----~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 81 DCPGHA----DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred ECCCHH----HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 999953 3333345556789999999999988888888888888888887 67899999997543323334444554
Q ss_pred HHHHhhC-CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLN-IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~-~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+..... ....+++++||+.+.+. ...|. .+++.|.+.+.+.+.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~------------------~~~~~-~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEG------------------DPKWE-DAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccC------------------CCcch-hhHHHHHHHHHHhCC
Confidence 4443311 12478999999987321 12343 467788888877664
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-13 Score=139.06 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=102.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|.+..+. ....||.. ++...... .+++.. ..+.|+|||
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-~~~~~T~~~d~~~~~i~------------~~~~~~---------~~~~i~Dt~ 58 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-KSYKQTIGLDFFSKRVT------------LPGNLN---------VTLQVWDIG 58 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEE------------eCCCCE---------EEEEEEECC
Confidence 47999999999999999999987653 34444443 21111110 011100 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh------cCCeEEEEEeCCCCCCChHH-HHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ------WKKKVVFVLNKSDLYQNAFE-LEEAIS 515 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~------~~~~vivVlNK~D~~~~~~~-~~~v~~ 515 (921)
|. +....+...++..+|++|+|+|.+++.+..+.. ++..+.. ...|+++|.||+|+...... .++..
T Consensus 59 G~----~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~- 133 (215)
T cd04109 59 GQ----SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA- 133 (215)
T ss_pred Cc----HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH-
Confidence 96 345567788899999999999999876555543 4444443 23579999999999643111 11111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+...+ ..+++++||+++ .|++++.+.+...+.
T Consensus 134 ----~~~~~~---~~~~~~iSAktg---------------------------~gv~~lf~~l~~~l~ 166 (215)
T cd04109 134 ----RFAQAN---GMESCLVSAKTG---------------------------DRVNLLFQQLAAELL 166 (215)
T ss_pred ----HHHHHc---CCEEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 122222 357899999987 688888888876655
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=132.33 Aligned_cols=144 Identities=18% Similarity=0.225 Sum_probs=90.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||++.|++..+.+ +..++.. .+....+. ..+.. ..+.++|
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~~---------~~~~~~D 62 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVE-------------IKGEK---------IKLQIWD 62 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEE-------------ECCEE---------EEEEEEE
Confidence 34899999999999999999999766543 2223221 11111110 01110 1378999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh---hhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT---QQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l---~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||. +........++..+|++++|+|.+++.+.... .++..+ ...+.|+++|+||+|+....+-..+ .
T Consensus 63 ~~g~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~----~ 134 (169)
T cd04114 63 TAGQ----ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQ----R 134 (169)
T ss_pred CCCc----HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHH----H
Confidence 9996 34445567789999999999999865444333 234333 3346789999999998644211111 2
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+.+. ...+++.+||+++
T Consensus 135 ~~~~~~~---~~~~~~~~Sa~~~ 154 (169)
T cd04114 135 AEEFSDA---QDMYYLETSAKES 154 (169)
T ss_pred HHHHHHH---cCCeEEEeeCCCC
Confidence 2222222 2367999999987
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=130.63 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=100.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|++..+. .+..+++........ ..++.- ..+.++||||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~---------~~~~i~D~~g 57 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKV-------------VLDGED---------VQLNILDTAG 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEE-------------EECCEE---------EEEEEEECCC
Confidence 47999999999999999999987654 344555433211110 011110 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCC-hHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQN-AFELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~-~~~~~~v~~~~~ 518 (921)
.. .+......++..+|.+++|+|.+++.+.... .++..+. ..+.|+++|+||+|+... .....+.....
T Consensus 58 ~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~- 132 (164)
T cd04139 58 QE----DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA- 132 (164)
T ss_pred hh----hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-
Confidence 63 4455677788999999999998865433222 2223222 256899999999999752 11222222211
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.. + ..+++++||+++ .|++++.+.+.+.+
T Consensus 133 ---~~-~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~ 161 (164)
T cd04139 133 ---RQ-W---GVPYVETSAKTR---------------------------QNVEKAFYDLVREI 161 (164)
T ss_pred ---HH-h---CCeEEEeeCCCC---------------------------CCHHHHHHHHHHHH
Confidence 11 1 368999999987 78888888776654
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=131.22 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=91.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCC-CCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGK-RYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~-~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|.+|+|||||+++|.+. ...+....||+..-....... ...+.. ..+.++||||
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~---------~~l~i~Dt~G 61 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVP-----------VDTDNT---------VELFIFDSAG 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEE-----------eCCCCE---------EEEEEEECCC
Confidence 7999999999999999999864 334455555553221111000 001110 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
. +....+...++..+|++++|+|.+++.+..+. .++..+... +.|+++|+||+|+.... +.... .....
T Consensus 62 ~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~---~~~~~ 133 (164)
T cd04101 62 Q----ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA-EVTDA---QAQAF 133 (164)
T ss_pred H----HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-CCCHH---HHHHH
Confidence 5 44456678889999999999999876554433 355555443 58999999999986431 11110 00111
Q ss_pred HHhhCCCCCeEEEecccch
Q 002437 522 MKLLNIENVTIYPVSARST 540 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++.+||+++
T Consensus 134 ~~~---~~~~~~~~Sa~~~ 149 (164)
T cd04101 134 AQA---NQLKFFKTSALRG 149 (164)
T ss_pred HHH---cCCeEEEEeCCCC
Confidence 111 1367999999887
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=133.89 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=102.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eE--EEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-IT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.++|+++|.+|+|||||+|.+.+..+.+ ...||... +. .+.+....... ....+.. ..+.||
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------~~~~i~ 68 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGG-----TLGRGQR---------IHLQLW 68 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccc-----cccCCCE---------EEEEEE
Confidence 4789999999999999999999876543 23333221 11 11111100000 0000110 148899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
||||. ++....+..+++.+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+..... ..++..
T Consensus 69 Dt~G~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~ 144 (180)
T cd04127 69 DTAGQ----ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK 144 (180)
T ss_pred eCCCh----HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence 99996 45566788889999999999999876555544 34555543 2578999999999864311 111111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
. +.... ..+++++||+.+ .|++++.+.+.+.+
T Consensus 145 ~-----~~~~~---~~~~~e~Sak~~---------------------------~~v~~l~~~l~~~~ 176 (180)
T cd04127 145 A-----LADKY---GIPYFETSAATG---------------------------TNVEKAVERLLDLV 176 (180)
T ss_pred H-----HHHHc---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHH
Confidence 1 11112 367999999987 57888777776544
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=149.13 Aligned_cols=192 Identities=20% Similarity=0.161 Sum_probs=115.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
....+|+++|+.++|||||+++|++..... +... ..... ..+....+..+.......... +.. --..++|+|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~-g~~~-~~~~~---~~d~~~~E~~rg~Ti~~~~~~--~~~-~~~~i~~iD 81 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKK-GGAE-AKAYD---QIDKAPEEKARGITINTAHVE--YET-EKRHYAHVD 81 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhc-cCCc-ccchh---hccCChHHHhcCeEEeeeEEE--EcC-CCeEEEEEE
Confidence 456899999999999999999999742100 0000 00000 000001111111111111110 100 013589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.. .+...+...+..+|++++|+|+..+......+++..+...+.|.+ +++||+|+...++..+.+...+...
T Consensus 82 tPG~~----~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 82 CPGHA----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred CCCHH----HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 99973 344445566789999999999998888888888888888888876 6899999975433334444455554
Q ss_pred HHHhhC-CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLN-IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~-~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...-. ....+++++||+.+.+.. ....|. .|+..|.+.|.+++.
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~----------------~~~~w~-~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGD----------------DDEEWE-KKILELMDAVDSYIP 203 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCC----------------Cccccc-ccHHHHHHHHHhcCC
Confidence 443211 235789999999874310 112343 367788888877654
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=135.45 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=78.9
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-CCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-LTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~ 512 (921)
..+.||||||. +.+...+...+..+|++++|+|+..+ ........+..+...+ +|+++|+||+|+... .....
T Consensus 83 ~~i~~iDtPG~----~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~-~~~~~ 157 (203)
T cd01888 83 RHVSFVDCPGH----EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE-EQALE 157 (203)
T ss_pred cEEEEEECCCh----HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH-HHHHH
Confidence 46899999995 33444566667889999999999874 2333344455444434 479999999999743 33344
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+.+++.+... .....+++++||+++ .|+++|.+++.+.+..
T Consensus 158 ~~~~i~~~~~~~-~~~~~~i~~vSA~~g---------------------------~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGT-IAENAPIIPISAQLK---------------------------YNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhcc-ccCCCcEEEEeCCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 444444433322 123578999999987 6899999988876653
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=135.92 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=102.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||++.|++..+.. ...||... + ..+.+. .+.. ..+.+||
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~--------------~~~~---------~~l~l~D 56 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWD--------------PNTV---------VRLQLWD 56 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEEC--------------CCCE---------EEEEEEE
Confidence 479999999999999999999876532 33444321 1 111111 0110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh-------hcCCeEEEEEeCCCCCCCh-HHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ-------QWKKKVVFVLNKSDLYQNA-FELEE 512 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~-------~~~~~vivVlNK~D~~~~~-~~~~~ 512 (921)
|||. +.+..++..+++.+|++|+|+|.+++.+..+.. ++..+. ....|+++|.||+|+.... ...++
T Consensus 57 t~G~----~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 132 (201)
T cd04107 57 IAGQ----ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ 132 (201)
T ss_pred CCCc----hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH
Confidence 9997 455667888999999999999998876655543 333332 2457999999999996321 11222
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+..+ . .+ ..+++++||+++ .|++++.+.+.+.+.
T Consensus 133 ~~~~~~----~-~~--~~~~~e~Sak~~---------------------------~~v~e~f~~l~~~l~ 168 (201)
T cd04107 133 MDQFCK----E-NG--FIGWFETSAKEG---------------------------INIEEAMRFLVKNIL 168 (201)
T ss_pred HHHHHH----H-cC--CceEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 222221 1 11 257999999987 578887777776655
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-13 Score=132.32 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=89.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||++.|....+. ...||+.. ....... .+ ..+.++||
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~-~~~~~~~-------------~~-----------~~~~l~Dt 60 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGF-NVETVTY-------------KN-----------VKFNVWDV 60 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCccc-ceEEEEE-------------CC-----------EEEEEEEC
Confidence 4579999999999999999999876543 23444321 1111000 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. +....+..++..+|++|||+|++++.+..+. ..+..+ .. .+.|+++|.||+|+.... ..+++.+.+
T Consensus 61 ~G~~----~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~ 135 (168)
T cd04149 61 GGQD----KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM-KPHEIQEKL 135 (168)
T ss_pred CCCH----HHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC-CHHHHHHHc
Confidence 9973 4455677889999999999999976544333 233333 22 357999999999986431 112222221
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. .. +.....+++++||+++
T Consensus 136 ~~--~~-~~~~~~~~~~~SAk~g 155 (168)
T cd04149 136 GL--TR-IRDRNWYVQPSCATSG 155 (168)
T ss_pred CC--Cc-cCCCcEEEEEeeCCCC
Confidence 10 00 1112246899999998
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-13 Score=155.49 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=101.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
++++|+++|++++|||||+|+|.+.++........|..+....+.. .++ +.++||||
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~------------~~~-----------~~i~~iDT 142 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVEN------------EDG-----------KMITFLDT 142 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEE------------CCC-----------cEEEEEEC
Confidence 5789999999999999999999998765443333343322211110 011 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH--
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN-- 520 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~-- 520 (921)
||.. .+..+....+..+|++++|+|++++...+..+.+..+...+.|+++++||+|+... +.+++...+...
T Consensus 143 PGhe----~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~--~~e~v~~~L~~~g~ 216 (587)
T TIGR00487 143 PGHE----AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA--NPDRVKQELSEYGL 216 (587)
T ss_pred CCCc----chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC--CHHHHHHHHHHhhh
Confidence 9974 33445567789999999999999887777777788777788999999999998643 123333333221
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
....++ ...+++++||+++
T Consensus 217 ~~~~~~-~~~~~v~iSAktG 235 (587)
T TIGR00487 217 VPEDWG-GDTIFVPVSALTG 235 (587)
T ss_pred hHHhcC-CCceEEEEECCCC
Confidence 111111 2368999999987
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=135.12 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=103.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||++.+.+..+.. ...||.. .+....+. .+|.. ..+.|||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~~---------~~l~l~D 61 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVE-------------INGER---------VKLQIWD 61 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEE-------------ECCEE---------EEEEEEe
Confidence 46899999999999999999999887532 2333322 11111100 01110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|||. +.+..+...++..+|++++|+|.+++.+..+. .++..+.. ...|+++|+||+|+..... ..++.....
T Consensus 62 ~~G~----~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~ 137 (199)
T cd04110 62 TAGQ----ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFA 137 (199)
T ss_pred CCCc----hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 9996 34556778889999999999999876554443 35555543 2468999999999875311 112222111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ...++|.+||+.+ .|+.++.+.+...+.
T Consensus 138 -----~~---~~~~~~e~Sa~~~---------------------------~gi~~lf~~l~~~~~ 167 (199)
T cd04110 138 -----GQ---MGISLFETSAKEN---------------------------INVEEMFNCITELVL 167 (199)
T ss_pred -----HH---cCCEEEEEECCCC---------------------------cCHHHHHHHHHHHHH
Confidence 11 2367999999987 578888887776654
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=148.96 Aligned_cols=193 Identities=20% Similarity=0.175 Sum_probs=112.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+..+..+|+++|++++|||||+|+|++.... .+.. ........+....+..+......... .++. --..++|
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~-~g~~----~~~~~~~~d~~~~E~~rGiT~~~~~~--~~~~-~~~~i~~ 79 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAK-KGGG----EAKAYDQIDNAPEEKARGITINTSHV--EYET-ANRHYAH 79 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhh-cCCc----ccchhhhccCChhHHhcCceEEEeee--EEcC-CCcEEEE
Confidence 3456789999999999999999999973110 0000 00000000000011111111000000 0000 0125899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCCCChHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
+||||.. .+...+...+..+|++++|+|+..+...+..+++..+...+.|.+ +|+||+|+...++..+.+...+.
T Consensus 80 iDtPGh~----~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 80 VDCPGHA----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred EECCCHH----HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 9999963 343445566788999999999998777777778888877788855 67999999754322333333444
Q ss_pred HHHHHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+... +. ...+++++||..+.+.. ....|. .++..|.+.|.+.+.
T Consensus 156 ~~l~~~-~~~~~~~~ii~~Sa~~g~n~~----------------~~~~w~-~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 156 ELLSKY-DFPGDDTPIIRGSALKALEGD----------------DDEEWE-AKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHc-CCCcCceeEEecchhccccCC----------------CCCccc-ccHHHHHHHHHhcCC
Confidence 444332 21 24789999999884421 012343 467788888777654
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=132.28 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=89.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||++.|.+..+.. ..||.. .....+.. ++ ..+.++||
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~l~D~ 66 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH--TSPTIG-SNVEEIVY-------------KN-----------IRFLMWDI 66 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC--cCCccc-cceEEEEE-------------CC-----------eEEEEEEC
Confidence 35789999999999999999998776542 233322 11111100 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .+...+..++..+|+++||+|++++.+..+. ..+..+ .. .+.|+++|+||+|+.... ..+++.+.+
T Consensus 67 ~G~~----~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~-~~~~i~~~l 141 (174)
T cd04153 67 GGQE----SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM-TPAEISESL 141 (174)
T ss_pred CCCH----HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC-CHHHHHHHh
Confidence 9973 4455667788999999999999876433222 233333 22 358999999999986431 122222221
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ........+++++||+++
T Consensus 142 ~~---~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 142 GL---TSIRDHTWHIQGCCALTG 161 (174)
T ss_pred Cc---ccccCCceEEEecccCCC
Confidence 10 001112357999999987
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=153.57 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=86.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+++.|+++|++|+|||||+|+|++..+.......+|..+-........... ........ .. +..+ ...+.||||
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~--~~~~~~~~-~~--v~~~-~~~l~~iDT 76 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEG--ICGDLLKK-FK--IRLK-IPGLLFIDT 76 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccc--cccccccc-cc--cccc-cCcEEEEEC
Confidence 467899999999999999999999876543333344322211111000000 00000000 00 0000 024899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
||.. .+..+...++..+|++++|+|++++.+.+..+.+..+...+.|+++|+||+|+..
T Consensus 77 pG~e----~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 77 PGHE----AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CCcH----hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 9973 3445566678999999999999987777777777777778899999999999974
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=130.64 Aligned_cols=144 Identities=20% Similarity=0.285 Sum_probs=90.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||++.+++..+.+.. .++.. .+...... .++.. ..+.|||
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~---------~~l~i~D 60 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL-FHTIGVEFLNKDLE-------------VDGHF---------VTLQIWD 60 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc-CCceeeEEEEEEEE-------------ECCeE---------EEEEEEe
Confidence 4579999999999999999999987765432 22221 11110000 01110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-------cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-------WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-------~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|||. ++...+...+++.+|++++|+|.+++.+..... ++..+.. .+.|+++|+||+|+.......+++
T Consensus 61 ~~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 136 (170)
T cd04116 61 TAGQ----ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEA 136 (170)
T ss_pred CCCh----HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHH
Confidence 9996 455667788899999999999998765444432 3333221 346999999999986332122222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+... .+ ...+++++||+++
T Consensus 137 ~~~~~----~~---~~~~~~e~Sa~~~ 156 (170)
T cd04116 137 QAWCR----EN---GDYPYFETSAKDA 156 (170)
T ss_pred HHHHH----HC---CCCeEEEEECCCC
Confidence 22221 11 1257899999887
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=131.94 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=99.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|..|+|||||++.+....+. ...||+.. +..+.+. + ..+.++|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~~~~~~~~~~---------------~-----------~~l~l~D 63 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIGFNVETVTYK---------------N-----------ISFTVWD 63 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccccceEEEEEC---------------C-----------EEEEEEE
Confidence 4589999999999999999999755442 23444431 1111110 0 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhh-h---cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQ-Q---WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~-~---~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||. ..+..++..++..+|++|||+|.+++.+..+ .+++..+. . .+.|+++|+||+|+.... ..+++.+.
T Consensus 64 ~~G~----~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~ 138 (175)
T smart00177 64 VGGQ----DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM-KAAEITEK 138 (175)
T ss_pred CCCC----hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-CHHHHHHH
Confidence 9997 3455678888999999999999987654333 23444432 2 347999999999986431 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+.. .. .......++++||+++ .|+.++.++|.+.+
T Consensus 139 ~~~--~~-~~~~~~~~~~~Sa~~g---------------------------~gv~e~~~~l~~~~ 173 (175)
T smart00177 139 LGL--HS-IRDRNWYIQPTCATSG---------------------------DGLYEGLTWLSNNL 173 (175)
T ss_pred hCc--cc-cCCCcEEEEEeeCCCC---------------------------CCHHHHHHHHHHHh
Confidence 110 00 1112345778999987 68888877776553
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-13 Score=135.89 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=89.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+|+|.+|+|||||+|.|.+..+. ....||+........ ..++.. ..+.||||||.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~-------------~~~~~~---------~~l~i~Dt~G~ 57 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQV-------------VVDGQP---------CMLEVLDTAGQ 57 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEE-------------EECCEE---------EEEEEEECCCc
Confidence 4889999999999999999977653 234454432211000 001111 13789999996
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
+++......+++.+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+...... ..+.
T Consensus 58 ----~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~---- 129 (190)
T cd04144 58 ----EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG---- 129 (190)
T ss_pred ----hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH----
Confidence 34555677889999999999999876655543 34444432 35799999999998643111 1111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+...+ ..+++.+||+++
T Consensus 130 -~~~~~~~---~~~~~e~SAk~~ 148 (190)
T cd04144 130 -AALARRL---GCEFIEASAKTN 148 (190)
T ss_pred -HHHHHHh---CCEEEEecCCCC
Confidence 1111222 357999999987
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-13 Score=143.52 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=100.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|++|+|||||+|+|+...-............+...+. ..+..+..........+.+.. ..+++|||||.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~---~~E~~rgiti~~~~~~~~~~~---~~i~liDTPG~ 74 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFM---EQERERGITIQSAATTCFWKD---HRINIIDTPGH 74 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCC---ccccCCCcCeeccEEEEEECC---EEEEEEECCCc
Confidence 489999999999999999974321111111011111111111 111222222222222222221 35899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
.. +...+..++..+|++|+|+|+..+.......++..+...+.|+++++||+|+... +.+.+.+.+++.+...
T Consensus 75 ~d----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a--~~~~~~~~l~~~l~~~- 147 (270)
T cd01886 75 VD----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA--DFFRVVEQIREKLGAN- 147 (270)
T ss_pred HH----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHhCCC-
Confidence 43 3334677889999999999999888888888888888889999999999998753 2344555555544322
Q ss_pred CCCCCeEEEecccchH
Q 002437 526 NIENVTIYPVSARSTL 541 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l 541 (921)
..+.++|+|+...+
T Consensus 148 --~~~~~~Pisa~~~f 161 (270)
T cd01886 148 --PVPLQLPIGEEDDF 161 (270)
T ss_pred --ceEEEeccccCCCc
Confidence 34568999997654
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.7e-13 Score=133.89 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=94.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|..|+|||||++.+....+ +....||+......... . ++.. ..+.||||||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~G 58 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVM------------I-GGEP---------YTLGLFDTAG 58 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 6899999999999999999998775 34555665321111110 0 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH----
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF---- 516 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~---- 516 (921)
.. ++..+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+....+..+.....
T Consensus 59 ~~----~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~ 134 (175)
T cd01874 59 QE----DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP 134 (175)
T ss_pred cc----chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCC
Confidence 73 3445666788999999999999987766655 25555543 357999999999986542211111000
Q ss_pred H-HHHHHHhhCC-CCCeEEEecccch
Q 002437 517 V-KENTMKLLNI-ENVTIYPVSARST 540 (921)
Q Consensus 517 ~-~~~~~~~~~~-~~~~v~~vSA~~~ 540 (921)
+ .+....+... ....+|.+||+++
T Consensus 135 v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 135 ITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred cCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 0 0111111111 2367999999987
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=132.92 Aligned_cols=155 Identities=22% Similarity=0.282 Sum_probs=100.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||++.++...+. ....||.. .+....+.. ++.. ..+.++|||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~Dt~ 57 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLDFHT-------------NRGK---------IRFNVWDTA 57 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 47999999999999999999866542 22233322 111111110 1110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|.. ........++..+|++|+|+|.+++.+.... .+++.+... +.|+++|.||+|+...... .+..+
T Consensus 58 G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~----- 127 (166)
T cd00877 58 GQE----KFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK-AKQIT----- 127 (166)
T ss_pred CCh----hhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC-HHHHH-----
Confidence 973 3334456678899999999999987665554 355555432 5899999999998733111 11111
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+. .....++|.+||+.+ .|+.++.+.+.+.+.
T Consensus 128 ~~---~~~~~~~~e~Sa~~~---------------------------~~v~~~f~~l~~~~~ 159 (166)
T cd00877 128 FH---RKKNLQYYEISAKSN---------------------------YNFEKPFLWLARKLL 159 (166)
T ss_pred HH---HHcCCEEEEEeCCCC---------------------------CChHHHHHHHHHHHH
Confidence 11 113478999999987 688888888876654
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=131.11 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=100.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEE-EEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|.+|+|||||++++++..+. ....||...-.. ..+.. +|.. ..+.+|||||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~Dt~G 58 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEI-------------LGVP---------FSLQLWDTAG 58 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEE-------------CCEE---------EEEEEEeCCC
Confidence 6899999999999999999998653 344555432111 11100 1110 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc----CCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW----KKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~----~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
. +++..+...+++.+|++++|+|++++.+.... .++..+.+. ..|+++|.||+|+.... +..........
T Consensus 59 ~----~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-~~~~~~~~~~~ 133 (170)
T cd04108 59 Q----ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA-QYALMEQDAIK 133 (170)
T ss_pred h----HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc-cccccHHHHHH
Confidence 6 45566778889999999999999875444332 455554332 25689999999986431 11111111111
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...+ ..+++.+||+++ .|+.++.+.+.+.+.
T Consensus 134 -~~~~~---~~~~~e~Sa~~g---------------------------~~v~~lf~~l~~~~~ 165 (170)
T cd04108 134 -LAAEM---QAEYWSVSALSG---------------------------ENVREFFFRVAALTF 165 (170)
T ss_pred -HHHHc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11112 357899999887 678888777766543
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=133.75 Aligned_cols=163 Identities=19% Similarity=0.236 Sum_probs=101.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|.+|+|||||++.+++..+. ....||+........ ...++.. -.+.++||||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i------------~~~~~~~---------~~l~i~Dt~G 58 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNI------------QGPNGKI---------IELALWDTAG 58 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEE------------EecCCcE---------EEEEEEECCC
Confidence 37999999999999999999987753 333444321110000 0011111 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. +++......++..+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+.........+.......
T Consensus 59 ~----~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~ 134 (187)
T cd04132 59 Q----EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES 134 (187)
T ss_pred c----hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHH
Confidence 6 344556667889999999999999876665542 4444432 3579999999999865321000011111111
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+....+ ..+++.+||+++ .|+.++...+.+.+.
T Consensus 135 ~~~~~~--~~~~~e~Sa~~~---------------------------~~v~~~f~~l~~~~~ 167 (187)
T cd04132 135 VAKKQG--AFAYLECSAKTM---------------------------ENVEEVFDTAIEEAL 167 (187)
T ss_pred HHHHcC--CcEEEEccCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111122 237899999987 678777777766554
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=131.17 Aligned_cols=142 Identities=20% Similarity=0.216 Sum_probs=93.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|..|+|||||++.+.+.++. ....||+......... .++.. ..+.|+|||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~ 58 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQAR-------------IDNEP---------ALLDILDTA 58 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEE-------------ECCEE---------EEEEEEeCC
Confidence 378999999999999999999987653 3344444321111100 01111 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|. .+...+...++..+|++|+|+|.+++.+..... ++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 59 G~----~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-- 132 (172)
T cd04141 59 GQ----AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN-- 132 (172)
T ss_pred Cc----hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH--
Confidence 96 345667888899999999999999887766654 3333332 3579999999999864310 1111111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+. ...+++.+||+.+
T Consensus 133 ---~a~~---~~~~~~e~Sa~~~ 149 (172)
T cd04141 133 ---LARE---FNCPFFETSAALR 149 (172)
T ss_pred ---HHHH---hCCEEEEEecCCC
Confidence 1111 2468999999987
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.7e-13 Score=132.16 Aligned_cols=147 Identities=21% Similarity=0.275 Sum_probs=89.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|++.++. ....|+.......... . ++.. ..+.++||||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~------------~-~~~~---------~~l~~~D~~g 57 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVT------------V-DGKQ---------VNLGLWDTAG 57 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEE------------E-CCEE---------EEEEEEeCCC
Confidence 47999999999999999999998763 2233333211111000 0 1110 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHH-------HH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELE-------EA 513 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~-------~v 513 (921)
... .......+++.+|++++|+|.+++.+..+. .++..+... +.|+++|+||+|+........ .+
T Consensus 58 ~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v 133 (171)
T cd00157 58 QEE----YDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPI 133 (171)
T ss_pred ccc----ccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCcc
Confidence 742 223444566899999999999876544332 355555433 489999999999976532211 01
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
............+ ..+++.+||+.+
T Consensus 134 ~~~~~~~~~~~~~--~~~~~~~Sa~~~ 158 (171)
T cd00157 134 TPEEGEKLAKEIG--AIGYMECSALTQ 158 (171)
T ss_pred CHHHHHHHHHHhC--CeEEEEeecCCC
Confidence 1111111222222 238999999887
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-12 Score=134.91 Aligned_cols=175 Identities=18% Similarity=0.277 Sum_probs=110.5
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
....+++|+|+|.+|+|||||+|+|+|.....++ ..++|.....+.... +| ..+.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-------------~g-----------~~i~ 82 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-------------DG-----------FKLN 82 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-------------CC-----------eEEE
Confidence 4557899999999999999999999999876544 335555544432211 11 2589
Q ss_pred EEeCCCCChhh--h----HHHHHHHHhcC--CCCEEEEEEeCCC-CCCHHHHHHHHHhhh-cC----CeEEEEEeCCCCC
Q 002437 439 IVDTPGTNVIL--Q----RQQRLTEEFVP--RADLVLFVISADR-PLTESEVVFLRYTQQ-WK----KKVVFVLNKSDLY 504 (921)
Q Consensus 439 lvDTPG~~~~~--~----~~~~~~~~~l~--~aD~il~V~da~~-~~t~~e~~~l~~l~~-~~----~~vivVlNK~D~~ 504 (921)
+|||||+++.. . .....+..++. ..|+++||...+. ..+..+..+++.+.+ .+ .++++|+||+|..
T Consensus 83 vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 83 IIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred EEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 99999997441 1 11222344553 6899999987764 467777888887765 23 5899999999997
Q ss_pred CChH---------HHHHHHHHHHHHHHHhhC---CCCCeEEEecccchHHhhcccccccccCcccccccCcccc
Q 002437 505 QNAF---------ELEEAISFVKENTMKLLN---IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWR 566 (921)
Q Consensus 505 ~~~~---------~~~~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 566 (921)
.+.. .....+..+.+....... ....||+.|+....-. .....+.-+|++..|.
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~c~--------~n~~~~~vlp~g~~w~ 228 (249)
T cd01853 163 PPDGLNGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPRCR--------KNREGEKVLPNGTVWK 228 (249)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCccc--------CCCCCCeECCCCCccH
Confidence 5521 122334444443322221 2357888887754311 1122345677777774
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=130.23 Aligned_cols=146 Identities=20% Similarity=0.237 Sum_probs=89.8
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
.....++|+++|++|+|||||++.|.+..+.. ..|+.. +...... .++ ..+.+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~--~~~t~g-~~~~~i~-------------~~~-----------~~~~~ 62 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH--ITPTQG-FNIKTVQ-------------SDG-----------FKLNV 62 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc--cCCCCC-cceEEEE-------------ECC-----------EEEEE
Confidence 44567899999999999999999999975422 222221 1110000 011 24889
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
+||||.. .....+..++..+|++++|+|+.+..+..+. ..+..+ ...+.|+++++||+|+... ...+++.
T Consensus 63 ~D~~G~~----~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~i~ 137 (173)
T cd04155 63 WDIGGQR----AIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA-APAEEIA 137 (173)
T ss_pred EECCCCH----HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC-CCHHHHH
Confidence 9999963 3445567788999999999999864332221 122222 2346899999999998643 2233333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+. +.. +.....+++++||+++
T Consensus 138 ~~l~--~~~-~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 138 EALN--LHD-LRDRTWHIQACSAKTG 160 (173)
T ss_pred HHcC--Ccc-cCCCeEEEEEeECCCC
Confidence 2221 111 1112346889999987
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=132.63 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+|+|..|+|||||+|.+++..+.. ...||... ....... .++.. ..+.++|||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~~---------~~~~i~Dt~ 57 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVY-------------IENKI---------IKLQIWDTN 57 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEE-------------ECCEE---------EEEEEEECC
Confidence 479999999999999999999887643 22333221 1111000 01110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. +.+......++..+|++|+|+|.+++.+..+.. ++..+.. ...|+++|.||+|+..... ..+....
T Consensus 58 g~----~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~--- 130 (188)
T cd04125 58 GQ----ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKS--- 130 (188)
T ss_pred Cc----HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHH---
Confidence 96 345557788899999999999998765544432 4444443 3478999999999874311 1111111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.... ..+++.+||+++
T Consensus 131 --~~~~~---~~~~~evSa~~~ 147 (188)
T cd04125 131 --FCDSL---NIPFFETSAKQS 147 (188)
T ss_pred --HHHHc---CCeEEEEeCCCC
Confidence 11112 357999999887
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=129.32 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=90.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+|+|.+|+|||||+|++++.. .+....|++.......+.. .+.. ..+.++|+||.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D~~g~ 57 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVV-------------DGET---------YTLDILDTAGQ 57 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEE-------------CCEE---------EEEEEEECCCh
Confidence 48999999999999999999877 4455566655322211111 0100 14789999996
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFVKE 519 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~~ 519 (921)
. .+......++..+|++++|+|.+++.+..+. .++..+. ....|+++|+||+|+..... ..+++.....
T Consensus 58 ~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~- 132 (160)
T cd00876 58 E----EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK- 132 (160)
T ss_pred H----HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-
Confidence 3 3445566788899999999999876544443 2333332 24689999999999875311 1122222211
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ...+++++|++.+
T Consensus 133 ---~----~~~~~~~~S~~~~ 146 (160)
T cd00876 133 ---E----WGCPFIETSAKDN 146 (160)
T ss_pred ---H----cCCcEEEeccCCC
Confidence 1 1268999999886
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=130.96 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=93.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+..+++..+. ....||.......... .++.. ..+.|+||||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~G 58 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVM-------------VDGKP---------VNLGLWDTAG 58 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CcCCCcceeeeEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 68999999999999999999987653 3445554321111110 01111 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH----
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF---- 516 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~---- 516 (921)
. +....+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+.......+.+...
T Consensus 59 ~----~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~ 134 (174)
T cd01871 59 Q----EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 134 (174)
T ss_pred c----hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCC
Confidence 6 34445667788999999999999987766664 24554443 257999999999986442222211110
Q ss_pred ----HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 ----VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ----~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
-...+...+ ...+++.+||+++
T Consensus 135 v~~~~~~~~~~~~--~~~~~~e~Sa~~~ 160 (174)
T cd01871 135 ITYPQGLAMAKEI--GAVKYLECSALTQ 160 (174)
T ss_pred CCHHHHHHHHHHc--CCcEEEEeccccc
Confidence 011111112 2248899999987
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=132.43 Aligned_cols=159 Identities=23% Similarity=0.234 Sum_probs=99.9
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
|+|+|.+|+|||||++.+.+..+. ....|+.......... . ++.. ..+.++||||..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~------------~-~~~~---------~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVE------------V-DGKP---------VELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEE------------E-CCEE---------EEEEEEECCCCc
Confidence 579999999999999999997753 3333333211100000 0 1111 148899999973
Q ss_pred hhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH--------
Q 002437 447 VILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI-------- 514 (921)
Q Consensus 447 ~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~-------- 514 (921)
....+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+.......++..
T Consensus 58 ----~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 133 (174)
T smart00174 58 ----DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVT 133 (174)
T ss_pred ----ccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCcc
Confidence 3334566678999999999999987655554 35565554 3689999999999975432221111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
......+....+ ..+++++||+++ .|++++.+.+.+.+
T Consensus 134 ~~~~~~~~~~~~--~~~~~e~Sa~~~---------------------------~~v~~lf~~l~~~~ 171 (174)
T smart00174 134 YEQGEALAKRIG--AVKYLECSALTQ---------------------------EGVREVFEEAIRAA 171 (174)
T ss_pred HHHHHHHHHHcC--CcEEEEecCCCC---------------------------CCHHHHHHHHHHHh
Confidence 000111222222 247899999987 67888877776544
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=135.17 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=93.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||++.|++..+.. ...||.. .+...... .++.. ..+.|||
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~-------------~~~~~---------~~l~l~D 67 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQ-------------VEGKT---------VKAQIWD 67 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEE-------------ECCEE---------EEEEEEE
Confidence 45799999999999999999999887543 2223321 11111110 01111 1488999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||. +++..++..+++.+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+........+...
T Consensus 68 t~G~----~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~-- 141 (216)
T PLN03110 68 TAGQ----ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQ-- 141 (216)
T ss_pred CCCc----HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHH--
Confidence 9996 45566788889999999999999877665554 35555543 35799999999998543111111111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+... ...+++.+||+.+
T Consensus 142 --~l~~~---~~~~~~e~SA~~g 159 (216)
T PLN03110 142 --ALAEK---EGLSFLETSALEA 159 (216)
T ss_pred --HHHHH---cCCEEEEEeCCCC
Confidence 11122 2478999999987
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=147.89 Aligned_cols=168 Identities=20% Similarity=0.137 Sum_probs=99.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..+++|+++|+.++|||||+++|++... ..+.. ..+.. ...+...++.++......+...+..+ -+.++|+|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~---~~~~~-~~~D~~~~E~~rGiTi~~~~~~~~~~---~~~i~~iD 130 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKA---KAVAF-DEIDKAPEEKARGITIATAHVEYETA---KRHYAHVD 130 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc---cceee-ccccCChhHhhcCceeeeeEEEEcCC---CeEEEEEE
Confidence 4678999999999999999999974310 00000 00000 00111111111221111111111111 13589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||+.. +...+...+..+|++++|+|+..+...++.+.+..+...+.| +|+++||+|+...++..+.+...+.+.
T Consensus 131 tPGh~~----f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~ 206 (447)
T PLN03127 131 CPGHAD----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELREL 206 (447)
T ss_pred CCCccc----hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 999843 222233445679999999999988888888888888888888 578999999985432233333344443
Q ss_pred HHHh-hCCCCCeEEEecccchH
Q 002437 521 TMKL-LNIENVTIYPVSARSTL 541 (921)
Q Consensus 521 ~~~~-~~~~~~~v~~vSA~~~l 541 (921)
+..+ +.....+++++|+..+.
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~ 228 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSAL 228 (447)
T ss_pred HHHhCCCCCcceEEEeccceee
Confidence 3321 11235789999997663
|
|
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=132.74 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=90.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||++.+.+..+. ....||+........ .. ++.. ..+.+|||
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~------------~~-~~~~---------~~l~i~Dt 60 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQC------------VI-DEET---------CLLDILDT 60 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEE------------EE-CCEE---------EEEEEEeC
Confidence 3589999999999999999999987653 233444322111000 00 1110 13789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||.. +...+...++..+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+..... ...+....
T Consensus 61 ~G~~----~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~ 136 (189)
T PTZ00369 61 AGQE----EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL 136 (189)
T ss_pred CCCc----cchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 9974 34456777889999999999998775544432 3444432 3569999999999854311 11111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+ ..+++.+||+++
T Consensus 137 -----~~~~---~~~~~e~Sak~~ 152 (189)
T PTZ00369 137 -----AKSF---GIPFLETSAKQR 152 (189)
T ss_pred -----HHHh---CCEEEEeeCCCC
Confidence 1111 367999999987
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=135.19 Aligned_cols=143 Identities=23% Similarity=0.281 Sum_probs=91.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|.|++.++.+. ..||+. .+...... ..++.. ..+.++||
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~------------~~~~~~---------~~l~i~Dt 59 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIE------------IEPGVR---------IKLQLWDT 59 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEE------------ECCCCE---------EEEEEEeC
Confidence 37899999999999999999998876433 223322 11110000 011111 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHH-HHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFE-LEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~-~~~v~~~ 516 (921)
||. +.+......+++.+|++|+|+|.+++.+..+. +++..+.. ...|+++|.||+|+...... .++. .
T Consensus 60 ~G~----~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~- 133 (211)
T cd04111 60 AGQ----ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-E- 133 (211)
T ss_pred Ccc----hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-H-
Confidence 996 44556678889999999999999987555544 34444432 34678999999998753111 1111 1
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.. ..+++.+||+++
T Consensus 134 ---~~~~~~---~~~~~e~Sak~g 151 (211)
T cd04111 134 ---KLAKDL---GMKYIETSARTG 151 (211)
T ss_pred ---HHHHHh---CCEEEEEeCCCC
Confidence 122222 368999999987
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=130.88 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=99.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||++.+....+. ...||+. ........ .+ ..+.++||
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~~-~~~~~~~~-------------~~-----------~~~~l~D~ 68 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTIG-FNVETVEY-------------KN-----------LKFTMWDV 68 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCccc-cceEEEEE-------------CC-----------EEEEEEEC
Confidence 4589999999999999999999765543 2334433 11111100 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||. +.....+..++..+|++|||+|++++.+..+. ..+..+ .. ...|+++|+||.|+.... ..+++...+
T Consensus 69 ~G~----~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~l 143 (182)
T PTZ00133 69 GGQ----DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-STTEVTEKL 143 (182)
T ss_pred CCC----HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-CHHHHHHHh
Confidence 997 34556788899999999999999865433332 223332 22 357999999999986431 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .........++.+||+++ .|++++.++|.+.+.
T Consensus 144 ~~---~~~~~~~~~~~~~Sa~tg---------------------------~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 144 GL---HSVRQRNWYIQGCCATTA---------------------------QGLYEGLDWLSANIK 178 (182)
T ss_pred CC---CcccCCcEEEEeeeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 10 011112235678899987 788888888876554
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=134.53 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||++.+++.++.. ..||+.. ...... .+. ..+.||||||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~-~~~~~~--------------~~~----------~~l~iwDt~G 53 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGG-AFYLKQ--------------WGP----------YNISIWDTAG 53 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccce-EEEEEE--------------eeE----------EEEEEEeCCC
Confidence 378999999999999999999987642 3344322 111000 000 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~ 505 (921)
.. .+..+...+++.+|++|+|+|.+++.+..+.. ++..+.. ...|+|+|.||+|+..
T Consensus 54 ~e----~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 54 RE----QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred cc----cchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 73 44556778899999999999999876666653 3433332 3478999999999875
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=129.82 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=100.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|..++|||||++.+....+. ...||+. +....... .+ ..+.++||
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g-~~~~~~~~-------------~~-----------~~~~i~D~ 68 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG-FNVETVEY-------------KN-----------ISFTVWDV 68 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--cccCCcc-eeEEEEEE-------------CC-----------EEEEEEEC
Confidence 4589999999999999999999865543 2344433 11111100 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||. ++....+..++..+|++|||+|++++.+..+. ..+..+ .. ...|+++|+||+|+.... ..+++.+.+
T Consensus 69 ~Gq----~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~l 143 (181)
T PLN00223 69 GGQ----DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKL 143 (181)
T ss_pred CCC----HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-CHHHHHHHh
Confidence 996 45566788899999999999999876543332 233333 21 357999999999986542 222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. +.. +......++++||+++ .|+.++.++|.+.+.
T Consensus 144 ~--l~~-~~~~~~~~~~~Sa~~g---------------------------~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 144 G--LHS-LRQRHWYIQSTCATSG---------------------------EGLYEGLDWLSNNIA 178 (181)
T ss_pred C--ccc-cCCCceEEEeccCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1 000 0111234667899998 688888888876654
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=157.39 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=100.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+++.|+|+|..++|||||+++|.+.++........|..+..+.+ .++. ..++|||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v---------------------~~~~---~~ItfiD 343 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQV---------------------ETNG---GKITFLD 343 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEE---------------------EECC---EEEEEEE
Confidence 468999999999999999999999877643322222222211111 1110 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH-
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN- 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~- 520 (921)
|||... +..+....+..+|++|+|+|++++...+..+.+..+...+.|+|+|+||+|+... +.+.+...+...
T Consensus 344 TPGhe~----F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a--~~e~V~~eL~~~~ 417 (787)
T PRK05306 344 TPGHEA----FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGA--NPDRVKQELSEYG 417 (787)
T ss_pred CCCCcc----chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccccc--CHHHHHHHHHHhc
Confidence 999753 3345566778899999999999887777777788888888999999999999643 223333332221
Q ss_pred -HHHhhCCCCCeEEEecccch
Q 002437 521 -TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 -~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...++ ...+++++||+++
T Consensus 418 ~~~e~~g-~~vp~vpvSAktG 437 (787)
T PRK05306 418 LVPEEWG-GDTIFVPVSAKTG 437 (787)
T ss_pred ccHHHhC-CCceEEEEeCCCC
Confidence 111111 2478999999987
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=155.00 Aligned_cols=152 Identities=16% Similarity=0.280 Sum_probs=101.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+++.|+|+|++++|||||+++|.+..+........|..+..+..... ....+ ..++|||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~---------~~~~~-----------~kItfiD 301 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFE---------YKDEN-----------QKIVFLD 301 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEE---------ecCCc-----------eEEEEEE
Confidence 367899999999999999999999876643222222322211111000 00001 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH-
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN- 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~- 520 (921)
|||. ..+..++..++..+|++|+|+|++++...+..+.+..+...+.|+|+|+||+|+... ..+++...+...
T Consensus 302 TPGh----e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~--~~e~v~~eL~~~~ 375 (742)
T CHL00189 302 TPGH----EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA--NTERIKQQLAKYN 375 (742)
T ss_pred CCcH----HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc--CHHHHHHHHHHhc
Confidence 9996 345556677889999999999999887777777788888888999999999998743 223333333221
Q ss_pred -HHHhhCCCCCeEEEecccch
Q 002437 521 -TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 -~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...++ ...+++++||+++
T Consensus 376 ll~e~~g-~~vpvv~VSAktG 395 (742)
T CHL00189 376 LIPEKWG-GDTPMIPISASQG 395 (742)
T ss_pred cchHhhC-CCceEEEEECCCC
Confidence 111111 2468999999987
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=129.43 Aligned_cols=141 Identities=27% Similarity=0.299 Sum_probs=89.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|.|.+. .+....||... ....... .+ ..+.++||||.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~~~~t~g~-~~~~~~~-------------~~-----------~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKKVAPTVGF-TPTKLRL-------------DK-----------YEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCccccCcccc-eEEEEEE-------------CC-----------EEEEEEECCCc
Confidence 4789999999999999999987 23333444321 1111100 01 14899999996
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
..+..++..++..+|++|||+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...++.+...
T Consensus 54 ----~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~~~-- 126 (167)
T cd04161 54 ----ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL-LGADVIEYLS-- 126 (167)
T ss_pred ----HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC-CHHHHHHhcC--
Confidence 34556778899999999999999876544443 34554432 468999999999987542 1222322211
Q ss_pred HHHhhCC--CCCeEEEecccch
Q 002437 521 TMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~--~~~~v~~vSA~~~ 540 (921)
+..+... ....++++||+++
T Consensus 127 l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 127 LEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred cccccCCCCceEEEEEeEceeC
Confidence 1111111 2346888999886
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=131.25 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=101.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE---EEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT---FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+.++|+++|.+|+|||||++.+++..+.+....||+.... .+.+ +|.. ..+.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~---------------~~~~---------~~l~~ 58 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV---------------YGQE---------KYLIL 58 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE---------------CCeE---------EEEEE
Confidence 4689999999999999999999998765355666654211 1111 1111 14789
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-cCCeEEEEEeCCCCCCChHH-HHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-WKKKVVFVLNKSDLYQNAFE-LEEAISF 516 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-~~~~vivVlNK~D~~~~~~~-~~~v~~~ 516 (921)
+||+|.. ....+...++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+...... ..+.
T Consensus 59 ~d~~g~~----~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~--- 131 (169)
T cd01892 59 REVGEDE----VAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQP--- 131 (169)
T ss_pred EecCCcc----cccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCH---
Confidence 9999963 2234556677999999999999876443332 34444422 36899999999998643211 0111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+.+.+.++. ..++++||+.+ .|+.++.+.+.+.+
T Consensus 132 --~~~~~~~~~--~~~~~~Sa~~~---------------------------~~v~~lf~~l~~~~ 165 (169)
T cd01892 132 --DEFCRKLGL--PPPLHFSSKLG---------------------------DSSNELFTKLATAA 165 (169)
T ss_pred --HHHHHHcCC--CCCEEEEeccC---------------------------ccHHHHHHHHHHHh
Confidence 112222332 24689999887 57888777776554
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=137.31 Aligned_cols=156 Identities=23% Similarity=0.338 Sum_probs=101.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||++.+++..+. ....||+..+....+.. +|.. ..+.||||||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i-------------~~~~---------~~l~I~Dt~G 57 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSI-------------RGEV---------YQLDILDTSG 57 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEE-------------CCEE---------EEEEEEECCC
Confidence 47999999999999999999987653 34556654322211110 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------------cCCeEEEEEeCCCCCCCh-HHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------------WKKKVVFVLNKSDLYQNA-FEL 510 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------------~~~~vivVlNK~D~~~~~-~~~ 510 (921)
.. .+..+...++..+|++|+|+|.++..+.++. .++..+.. .+.|+|+|.||+|+.... ...
T Consensus 58 ~~----~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 58 NH----PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR 133 (247)
T ss_pred Ch----hhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence 63 3334555677899999999999976655444 24444432 257999999999987421 112
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+++.+.+. . .....++++||+++ .|++++...|.+..
T Consensus 134 ~ei~~~~~----~---~~~~~~~evSAktg---------------------------~gI~elf~~L~~~~ 170 (247)
T cd04143 134 DEVEQLVG----G---DENCAYFEVSAKKN---------------------------SNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHHHH----h---cCCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHh
Confidence 22222211 1 12467999999987 67888877777654
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=147.67 Aligned_cols=169 Identities=20% Similarity=0.128 Sum_probs=104.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+..+|+++|++++|||||+++|++......+..+.. +...+...++..+......+...+... -..++|||
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~-----~~~~D~~~~Er~rGiTi~~~~~~~~~~---~~~i~liD 150 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK-----YDEIDAAPEERARGITINTATVEYETE---NRHYAHVD 150 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc-----cccccCChhHHhCCeeEEEEEEEEecC---CcEEEEEE
Confidence 4568899999999999999999996432111100000 000111111111111111111111111 13589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.. .+...+...+..+|++++|+|+..+...+..+.+..+...+.| +++++||+|+...++..+.+.+.+...
T Consensus 151 tPGh~----~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 151 CPGHA----DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred CCCHH----HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 99963 3333455566789999999999988888888888888888887 788999999986433344444455555
Q ss_pred HHHh-hCCCCCeEEEecccchHH
Q 002437 521 TMKL-LNIENVTIYPVSARSTLE 542 (921)
Q Consensus 521 ~~~~-~~~~~~~v~~vSA~~~l~ 542 (921)
+... +.....+++++|+..+.+
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHhcCCCcCcceEEEEEcccccc
Confidence 5442 122368999999998743
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=135.16 Aligned_cols=169 Identities=19% Similarity=0.137 Sum_probs=94.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-----------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVV-----------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL 434 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-----------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l 434 (921)
+|+++|+.++|||||+++|+...-...... ..+ .+.+..+.+....+..+..........+.+..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~-~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--- 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKG-SFKYAWVLDTLKEERERGVTIDVGLAKFETEK--- 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCc-chhHHhhhcCCHHHhhCccCeecceEEEeeCC---
Confidence 489999999999999999975321110000 000 00000011111111222222211222221211
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~ 506 (921)
..+.++||||... +...+...+..+|++|+|+|+..+ ...+....+..+...+ +|+++|+||+|+...
T Consensus 77 ~~i~liDtpG~~~----~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 77 YRFTILDAPGHRD----FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred eEEEEEECCChHH----HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 3589999999732 223355667889999999999874 2223334444444444 689999999999742
Q ss_pred ---hHHHHHHHHHHHHHHHHhh-CCCCCeEEEecccchHH
Q 002437 507 ---AFELEEAISFVKENTMKLL-NIENVTIYPVSARSTLE 542 (921)
Q Consensus 507 ---~~~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~l~ 542 (921)
+...+++.+.+...+...- .....+|+++||+++.+
T Consensus 153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~g 192 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDN 192 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCC
Confidence 3445666666655554431 12357899999998843
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-12 Score=131.80 Aligned_cols=142 Identities=16% Similarity=0.262 Sum_probs=92.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.|+++|..|+|||||++.+....+. ....+|.. .+...... .+|.. ..+.+|||+|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~-------------~~~~~---------v~l~iwDtaG 58 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVE-------------LRGKK---------IRLQIWDTAG 58 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEE-------------ECCEE---------EEEEEEeCCC
Confidence 5889999999999999999987763 23334432 11110000 01111 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. +++..++..|++.+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+.... + +.......
T Consensus 59 q----e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~-~---v~~~~~~~ 130 (202)
T cd04120 59 Q----ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR-E---ISRQQGEK 130 (202)
T ss_pred c----hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-c---cCHHHHHH
Confidence 7 456677889999999999999999877666653 4444433 357999999999986431 1 11111111
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.... ....+|.+||+++
T Consensus 131 ~a~~~--~~~~~~etSAktg 148 (202)
T cd04120 131 FAQQI--TGMRFCEASAKDN 148 (202)
T ss_pred HHHhc--CCCEEEEecCCCC
Confidence 11111 1367999999987
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=132.97 Aligned_cols=157 Identities=19% Similarity=0.242 Sum_probs=101.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+++|++..+. ...|++.. .....+.. ++.. ..+.|+|
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~l~D 68 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTV-------------GGKR---------LKLTIWD 68 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEE-------------CCEE---------EEEEEEE
Confidence 4589999999999999999999987653 33344322 11111100 1110 1479999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||. +++..+...+++.+|++|+|+|.+++.+..+.. +...+.. ...|+++|+||+|+..... ..++..
T Consensus 69 t~G~----~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~ 144 (211)
T PLN03118 69 TAGQ----ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM 144 (211)
T ss_pred CCCc----hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence 9997 344556778889999999999999766555543 2222321 3468999999999864311 111111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . .. ...++|++||+.+ .|++++.+.+...+.
T Consensus 145 ~~----~-~~---~~~~~~e~SAk~~---------------------------~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 145 AL----A-KE---HGCLFLECSAKTR---------------------------ENVEQCFEELALKIM 177 (211)
T ss_pred HH----H-HH---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 1 11 2367999999987 678888877776654
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-13 Score=140.41 Aligned_cols=162 Identities=9% Similarity=-0.008 Sum_probs=119.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH---HHH-HHHHHHHHHHh-hc-CceEEecC---cHHHHHhCCCCe--EEcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG---KSV-YEAACLLKSVV-KD-RALFLIAE---RVDIAAAVNASG--VLLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~---~~~-~~~a~~l~~~~-~~-~~~~ivnd---~~dla~~~~a~G--vHL~~~~ 168 (921)
++.+.++.+.++|+++||||.++... ..+ .+.++++++.| .. .+.+++|| +++.+.++|+|| ||.++.+
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~~~ 92 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAEATD 92 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccchh
Confidence 77889999999999999999987632 111 36788888887 44 57899996 899999999999 6777776
Q ss_pred CCHHHHHHhcccCCCCccccCeEEEecCC--HHHHHcccccCCCCEEEeCCC----CCCCC---Ccc-hhhhhhcC----
Q 002437 169 LPAIVARNTMKDSMSESVVLPLVGRNVQT--LDAAFNASSSEGADFLVCCFG----EGQKA---DVI-ENSLFTNV---- 234 (921)
Q Consensus 169 l~~~~~r~~~~~~~~~~~~~~~ig~S~h~--~~e~~~A~~~~gaDyv~~gpv----Tk~~~---g~~-~~~~~~~~---- 234 (921)
.+....+...+ .+ . .+|.+||. ..+..++ ...++||+.++|+ |+... ++. ...+++..
T Consensus 93 ~~~~~~~~~~~---~~-~---~~g~~~~~~~~~~~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~ 164 (211)
T cd00429 93 HLHRTIQLIKE---LG-M---KAGVALNPGTPVEVLEP-YLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENN 164 (211)
T ss_pred hHHHHHHHHHH---CC-C---eEEEEecCCCCHHHHHH-HHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcC
Confidence 66556665543 33 2 57777763 4444444 3556999999987 33221 122 24454444
Q ss_pred -CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 -KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 -~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||++.|||+++|+.++.++|++||++.++.++.
T Consensus 165 ~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 165 LNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred CCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 48999999999999999999999999999888764
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=126.90 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=90.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||++.+++..+.+. ..||... ....... ..+.. ..+.++|||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~-------------~~~~~---------~~l~i~D~~ 57 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS-HISTIGVDFKMKTIE-------------VDGIK---------VRIQIWDTA 57 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEE-------------ECCEE---------EEEEEEeCC
Confidence 4799999999999999999998876533 3333321 1110000 01110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|. ++.......++..+|++++|+|.+++.+..+. .+++.+.. ...|+++|.||+|+..... +......
T Consensus 58 g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----v~~~~~~ 129 (161)
T cd04117 58 GQ----ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----VGDEQGN 129 (161)
T ss_pred Cc----HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC----CCHHHHH
Confidence 96 34555677788999999999999876555544 34554443 3579999999999864311 1011111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.. ..+++++||+.+
T Consensus 130 ~~~~~~---~~~~~e~Sa~~~ 147 (161)
T cd04117 130 KLAKEY---GMDFFETSACTN 147 (161)
T ss_pred HHHHHc---CCEEEEEeCCCC
Confidence 222222 367999999987
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=151.94 Aligned_cols=150 Identities=22% Similarity=0.303 Sum_probs=100.1
Q ss_pred eCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhhh
Q 002437 371 GEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQ 450 (921)
Q Consensus 371 G~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~ 450 (921)
|.+|+|||||+|+|+|.+....+...+|.+.....+.. ++ ..+.++||||+.+...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-------------~~-----------~~i~lvDtPG~~~~~~ 56 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-------------QG-----------EDIEIVDLPGIYSLTT 56 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-------------CC-----------eEEEEEECCCccccCc
Confidence 89999999999999998764444444554433222111 11 2489999999875432
Q ss_pred --HHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 002437 451 --RQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN 526 (921)
Q Consensus 451 --~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~ 526 (921)
..+.....++ ..+|++++|+|+++. +....+..++.+.+.|+++|+||+|+.... ....- .+.+.+.+
T Consensus 57 ~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~-~i~~d----~~~L~~~l- 128 (591)
T TIGR00437 57 FSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKK-GIRID----EEKLEERL- 128 (591)
T ss_pred cchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhC-CChhh----HHHHHHHc-
Confidence 2334555554 479999999999863 345566667777889999999999985321 11111 12233333
Q ss_pred CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 527 IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 527 ~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+.+++++||+++ .|++++.+.+.+..
T Consensus 129 --g~pvv~tSA~tg---------------------------~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 129 --GVPVVPTSATEG---------------------------RGIERLKDAIRKAI 154 (591)
T ss_pred --CCCEEEEECCCC---------------------------CCHHHHHHHHHHHh
Confidence 368999999987 68888888877653
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=130.99 Aligned_cols=145 Identities=20% Similarity=0.225 Sum_probs=89.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|.|.+..+. ...||.. ++...+.. ++ ..+.++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~~~T~~-~~~~~i~~-------------~~-----------~~~~l~D 69 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QHVPTLH-PTSEELTI-------------GN-----------IKFKTFD 69 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc--ccCCccC-cceEEEEE-------------CC-----------EEEEEEE
Confidence 35689999999999999999999987653 2223221 11111100 01 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||. ......+..++..+|++++|+|..+..+..+ ...+..+. ..+.|+++|+||+|+... ...+++...
T Consensus 70 ~~G~----~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-~~~~~~~~~ 144 (190)
T cd00879 70 LGGH----EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA-VSEEELRQA 144 (190)
T ss_pred CCCC----HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-cCHHHHHHH
Confidence 9996 3344567788899999999999986533222 22333332 245899999999998643 122333332
Q ss_pred HHHHHHHhh----------CCCCCeEEEecccch
Q 002437 517 VKENTMKLL----------NIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~----------~~~~~~v~~vSA~~~ 540 (921)
+... ... .....+++++||+++
T Consensus 145 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 176 (190)
T cd00879 145 LGLY--GTTTGKGVSLKVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred hCcc--cccccccccccccCceeEEEEEeEecCC
Confidence 2210 000 012356899999987
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-12 Score=131.63 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=85.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------cccccE
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------ILKEMI 438 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------~l~~l~ 438 (921)
+|+++|+.++|||||+++|+...-........+ ..+.+....+..+........+...++.. .-..+.
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~-----~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ 76 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGK-----ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLIN 76 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCc-----eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEE
Confidence 699999999999999999986432111111001 11222222223333333222222222211 012488
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY 504 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~ 504 (921)
||||||... +...+..++..+|++++|+|+..+.+.+...+++.+...+.|+++|+||+|+.
T Consensus 77 iiDTPG~~~----f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 77 LIDSPGHVD----FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EECCCCccc----cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999843 34457788899999999999999888888888888777788999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=129.46 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=95.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|..++|||||+..+.+..+. ....|+.. ....... ...++.. -.+.++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~-~~~~~~~-----------i~~~~~~---------~~l~iwD 61 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMG-IDYKTTT-----------ILLDGRR---------VKLQLWD 61 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcce-eEEEEEE-----------EEECCEE---------EEEEEEe
Confidence 35689999999999999999999986543 22222211 1110000 0001111 1488999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|||. +++..++..+++.+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||.|+..... ..++.....
T Consensus 62 t~G~----~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a 137 (189)
T cd04121 62 TSGQ----GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYA 137 (189)
T ss_pred CCCc----HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHH
Confidence 9997 456677888999999999999999887766654 5666654 3579999999999864210 112222221
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. ...++|.+||+++
T Consensus 138 ----~~----~~~~~~e~SAk~g 152 (189)
T cd04121 138 ----ER----NGMTFFEVSPLCN 152 (189)
T ss_pred ----HH----cCCEEEEecCCCC
Confidence 11 2468999999987
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=132.30 Aligned_cols=158 Identities=19% Similarity=0.155 Sum_probs=99.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||++.+++..+. ....+|+.......+.. .+.. ..+.|+||||.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~D~~G~ 57 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEV-------------GGVS---------LTLDILDTSGS 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEE-------------CCEE---------EEEEEEECCCc
Confidence 4899999999999999999987754 23344443222111110 0100 14789999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
. .+..+...++..+|++|+|+|.+++.+..+.. ++..+. ..+.|+++|+||+|+......... ....+.
T Consensus 58 ~----~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~--~~~~~~ 131 (198)
T cd04147 58 Y----SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA--KDALST 131 (198)
T ss_pred h----hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH--HHHHHH
Confidence 4 33445667889999999999998765555442 223332 256899999999998753111110 011111
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ....+++++||+++ .|+.++.+.+.+.+.
T Consensus 132 ~~~---~~~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~~~ 163 (198)
T cd04147 132 VEL---DWNCGFVETSAKDN---------------------------ENVLEVFKELLRQAN 163 (198)
T ss_pred HHh---hcCCcEEEecCCCC---------------------------CCHHHHHHHHHHHhh
Confidence 111 12357899999987 688888888876544
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-12 Score=127.74 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=102.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE---EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT---FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|..++|||||++.+++..+. ....||...-. .+.. ++.. ..+.+||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~---------------~~~~---------~~l~iwD 55 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISI---------------RGTE---------ITFSIWD 55 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEE---------------CCEE---------EEEEEEe
Confidence 47999999999999999999987653 34555543211 1111 1111 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh--HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA--FELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~--~~~~~v~~ 515 (921)
|+|. +++..+...+++.+|++++|+|.+++.+..+. +++..+.. ...| |+|.||+|+.... ++.+.+.+
T Consensus 56 t~G~----~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~ 130 (182)
T cd04128 56 LGGQ----REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITK 130 (182)
T ss_pred CCCc----hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHH
Confidence 9996 34456677889999999999999987665554 35555543 2345 6889999996421 11111222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+ +... .+.+++++||+++ .|++++.+.+.+.+.
T Consensus 131 ~~~~-~a~~---~~~~~~e~SAk~g---------------------------~~v~~lf~~l~~~l~ 166 (182)
T cd04128 131 QARK-YAKA---MKAPLIFCSTSHS---------------------------INVQKIFKIVLAKAF 166 (182)
T ss_pred HHHH-HHHH---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 2222 2222 2368999999987 688888887776554
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.9e-12 Score=129.94 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=105.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|..++|||||++.+....+. ....||......... .. ++.. -.+.+||||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~------------~~-~~~~---------~~l~i~Dt~ 59 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP-KEYIPTVFDNYSAQT------------AV-DGRT---------VSLNLWDTA 59 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC-cCCCCceEeeeEEEE------------EE-CCEE---------EEEEEEECC
Confidence 478999999999999999999987653 334444432111000 00 1111 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH---
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF--- 516 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~--- 516 (921)
|. +++..+...+++.+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||.|+.......+.+.+.
T Consensus 60 G~----e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 135 (191)
T cd01875 60 GQ----EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQA 135 (191)
T ss_pred Cc----hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence 97 455667778899999999999999877766653 4444443 357999999999996542222211110
Q ss_pred --HHHHHHHhhCCCC-CeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 --VKENTMKLLNIEN-VTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 --~~~~~~~~~~~~~-~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+....+..... .+++.+||+++ .|+.++...+.+.+..
T Consensus 136 ~v~~~~~~~~a~~~~~~~~~e~SAk~g---------------------------~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 136 PITPQQGGALAKQIHAVKYLECSALNQ---------------------------DGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCCC---------------------------CCHHHHHHHHHHHHhc
Confidence 0011111111122 57999999987 5777777777665543
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=145.06 Aligned_cols=168 Identities=18% Similarity=0.104 Sum_probs=98.5
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....++|+++|+.++|||||+++|++... ..+... .......+....+.++........ ..++. --+.+.||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~-~~g~~~----~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~-~~~~~~li 80 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA-KEGGAA----ARAYDQIDNAPEEKARGITINTAH--VEYET-ENRHYAHV 80 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH-Hhhccc----ccccccccCCHHHHhcCcceeeEE--EEEcC-CCEEEEEE
Confidence 34678999999999999999999985411 000000 000000000111111111111110 01110 01358999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCCCChHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||||.. ++...+...+..+|++++|+|+..+...+..+.+..+...+.|.+ +|+||+|+...++..+.+.+.++.
T Consensus 81 DtpGh~----~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~ 156 (394)
T TIGR00485 81 DCPGHA----DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (394)
T ss_pred ECCchH----HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence 999973 333334445578899999999998777777888888877777755 689999998543333334444544
Q ss_pred HHHHhhC-CCCCeEEEecccch
Q 002437 520 NTMKLLN-IENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~-~~~~~v~~vSA~~~ 540 (921)
.+...-. ....+++++||..+
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred HHHhcCCCccCccEEECccccc
Confidence 4443311 12378999999886
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=134.46 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=95.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-ee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++|+++|.+|+|||||++.+++..+......|+.. .. ..+.+. +.. ..+.+||
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~---------------~~~---------~~l~i~D 56 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD---------------GEE---------STLVVID 56 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC---------------CEE---------EEEEEEe
Confidence 47999999999999999999876653122222221 11 111111 100 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcC-CCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVP-RADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~-~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||.. ......++. .+|++++|+|++++.+.... +++..+.. .+.|+|+|.||+|+..... ..++.
T Consensus 57 t~G~~------~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~- 129 (221)
T cd04148 57 HWEQE------MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG- 129 (221)
T ss_pred CCCcc------hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-
Confidence 99975 112223445 89999999999976554433 34454443 3579999999999864411 01111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+... ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 130 ----~~~a~~---~~~~~~e~SA~~~---------------------------~gv~~l~~~l~~~~~ 163 (221)
T cd04148 130 ----RACAVV---FDCKFIETSAGLQ---------------------------HNVDELLEGIVRQIR 163 (221)
T ss_pred ----HHHHHH---cCCeEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111111 1357899999887 688888887776654
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-12 Score=127.55 Aligned_cols=144 Identities=17% Similarity=0.287 Sum_probs=89.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||++.+++..+.. ...++.. ....... ...++.. ..+.++|||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~-~~~~~~~-----------~~~~~~~---------~~~~i~Dt~ 59 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIG-VDFRERT-----------VEIDGER---------IKVQLWDTA 59 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cccccee-EEEEEEE-----------EEECCeE---------EEEEEEeCC
Confidence 3789999999999999999999876532 2222221 1111000 0001110 148899999
Q ss_pred CCChhhhHHH-HHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 444 GTNVILQRQQ-RLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~-~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|.. +.. .+...+++.+|++++|+|.+++.+..+.. ++..+.. ...|+++|.||+|+........+..
T Consensus 60 G~~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~--- 132 (170)
T cd04115 60 GQE----RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLA--- 132 (170)
T ss_pred ChH----HHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHH---
Confidence 963 222 35677889999999999999876655553 4444443 3479999999999864311111111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+... ...+++.+||+.+
T Consensus 133 -~~~~~~---~~~~~~e~Sa~~~ 151 (170)
T cd04115 133 -QRFADA---HSMPLFETSAKDP 151 (170)
T ss_pred -HHHHHH---cCCcEEEEeccCC
Confidence 111121 2367999999984
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-13 Score=144.51 Aligned_cols=240 Identities=18% Similarity=0.185 Sum_probs=162.2
Q ss_pred cccccchHHHHHhhhcccCCCcccccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 002437 265 EDLSLFNDGVLSQMFCANGTTNEKTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAIDVIKKA 344 (921)
Q Consensus 265 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~ 344 (921)
-.+.+|...+++.+ ++..+....+++.+..+..... ...++...+.+.++.-...+..+..+.++...+++.
T Consensus 73 ~~ihPfy~dL~~~l----y~~dhYk~aLgqv~~ak~lv~~----vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q 144 (620)
T KOG1490|consen 73 NDIHPFYADLLNIL----YDRDHYKIALGQVSTAKHLVEN----VARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQ 144 (620)
T ss_pred cccCcchHHHHHHH----hcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666655 5666667778888877776443 223444455566777788888899999999999999
Q ss_pred CccHHHHHHHHHHHhcCC----CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhccccc
Q 002437 345 SPLMEEVSLLIDAVSQID----EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH 420 (921)
Q Consensus 345 ~~~~~~~~~l~~~~~~~~----~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~ 420 (921)
.+.++.+..+.+.+.++. +..++.++|.||+|||||+|-++..++-...+.+||..+-..++..
T Consensus 145 ~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy------------ 212 (620)
T KOG1490|consen 145 KSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY------------ 212 (620)
T ss_pred cchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh------------
Confidence 988888888888777765 4578999999999999999999988877667777776543322110
Q ss_pred CCCeEEeecCCCcccccEEEeCCCCChhh-hHHHHH----HHHhcCCCCEEEEEEeCCCC--CC-HHHHHHHHHhhh--c
Q 002437 421 PDGQYICYLPSPILKEMIIVDTPGTNVIL-QRQQRL----TEEFVPRADLVLFVISADRP--LT-ESEVVFLRYTQQ--W 490 (921)
Q Consensus 421 ~~g~~~~~~p~~~l~~l~lvDTPG~~~~~-~~~~~~----~~~~l~~aD~il~V~da~~~--~t-~~e~~~l~~l~~--~ 490 (921)
.+ ..+.++||||+-+-. +....+ +.....---+|||++|.+.. .+ .++..+++.|+. .
T Consensus 213 ---kY---------lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa 280 (620)
T KOG1490|consen 213 ---KY---------LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA 280 (620)
T ss_pred ---he---------eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc
Confidence 01 147899999995331 211111 11111233479999998743 33 445678888886 5
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++|+|+|+||+|.... +++.+-.+.+-+.+. ....++|+..|+.+.
T Consensus 281 NK~~IlvlNK~D~m~~-edL~~~~~~ll~~~~---~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 281 NKVTILVLNKIDAMRP-EDLDQKNQELLQTII---DDGNVKVVQTSCVQE 326 (620)
T ss_pred CCceEEEeecccccCc-cccCHHHHHHHHHHH---hccCceEEEecccch
Confidence 6899999999999876 333333333333222 223478999998663
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=129.03 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=89.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.+.+.++. ....|++.......... ++.. ..+.+|||||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~G 57 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTV-------------GGKQ---------YLLGLYDTAG 57 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEE-------------CCEE---------EEEEEEeCCC
Confidence 47999999999999999999988764 23344432211111100 1110 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH------
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI------ 514 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~------ 514 (921)
... .......++..+|++|+|+|..++.+..+. .++..+.. .+.|+++|+||+|+.........+.
T Consensus 58 ~~~----~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 133 (174)
T cd04135 58 QED----YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKP 133 (174)
T ss_pred ccc----ccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCC
Confidence 742 233455677899999999999877655444 24444433 4689999999999865432221110
Q ss_pred --HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 --SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 --~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
......+...++ ..+++.+||+++
T Consensus 134 v~~~~~~~~~~~~~--~~~~~e~Sa~~~ 159 (174)
T cd04135 134 VTVEQGQKLAKEIG--AHCYVECSALTQ 159 (174)
T ss_pred CCHHHHHHHHHHcC--CCEEEEecCCcC
Confidence 000111111122 246899999987
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=142.69 Aligned_cols=124 Identities=29% Similarity=0.364 Sum_probs=90.6
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
..++..+.|+++|+||+|||||+|+|..++...+++. .||++.....+.. +| ..+
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-------------~G-----------~~v 318 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-------------NG-----------VPV 318 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-------------CC-----------eEE
Confidence 3455679999999999999999999999987765555 4777655544432 22 258
Q ss_pred EEEeCCCCCh-----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh------------cCCeEEEEEeC
Q 002437 438 IIVDTPGTNV-----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ------------WKKKVVFVLNK 500 (921)
Q Consensus 438 ~lvDTPG~~~-----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~------------~~~~vivVlNK 500 (921)
.|+||.|+-. +....-...++.+..||+|++|+|+....+.++..+.+.+.. .+.|++++.||
T Consensus 319 ~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk 398 (531)
T KOG1191|consen 319 RLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANK 398 (531)
T ss_pred EEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEech
Confidence 9999999842 122234456777899999999999976666666654444422 23689999999
Q ss_pred CCCCCC
Q 002437 501 SDLYQN 506 (921)
Q Consensus 501 ~D~~~~ 506 (921)
+|+..+
T Consensus 399 ~D~~s~ 404 (531)
T KOG1191|consen 399 SDLVSK 404 (531)
T ss_pred hhccCc
Confidence 999865
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=129.99 Aligned_cols=162 Identities=21% Similarity=0.226 Sum_probs=101.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||++.+++..+. ....||......... ..++.. ..+.|+||||.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i-------------~~~~~~---------~~l~i~Dt~G~ 58 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDI-------------FVDGLH---------IELSLWDTAGQ 58 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEE-------------EECCEE---------EEEEEEECCCC
Confidence 6899999999999999999987653 223343321110000 001110 14899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH-----
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF----- 516 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~----- 516 (921)
. .+..+...++..+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+....+. .+....
T Consensus 59 ~----~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~-~~~~~~~~~~~ 133 (189)
T cd04134 59 E----EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNE-RDDLQRYGKHT 133 (189)
T ss_pred h----hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhh-HHHHhhccCCC
Confidence 3 3344556678999999999999987666544 35666654 35799999999999754221 111000
Q ss_pred -HHHHHHHhh-CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 -VKENTMKLL-NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 -~~~~~~~~~-~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+. .....+++.+||+++ .|++++...+.+.+.
T Consensus 134 v~~~~~~~~~~~~~~~~~~e~SAk~~---------------------------~~v~e~f~~l~~~~~ 174 (189)
T cd04134 134 ISYEEGLAVAKRINALRYLECSAKLN---------------------------RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCcC---------------------------CCHHHHHHHHHHHHh
Confidence 000111111 112367999999987 688888777776655
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.4e-12 Score=126.42 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=89.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||++.+.+..+. ....||.......... . ++.. ..+.++||||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~l~i~Dt~G 58 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIE------------V-DGKQ---------VELALWDTAG 58 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEE------------E-CCEE---------EEEEEEeCCC
Confidence 57999999999999999999987653 2334443221111110 0 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHH-----
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAIS----- 515 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~----- 515 (921)
.. ........++..+|++++|+|.++..+.... .++..+.. .+.|+++|.||+|+.......+++..
T Consensus 59 ~~----~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~ 134 (175)
T cd01870 59 QE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 134 (175)
T ss_pred ch----hhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCC
Confidence 73 3334444577899999999999876544333 24444443 36799999999998754222221110
Q ss_pred ---HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 ---FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ---~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.-...+...+ ...+++++||+.+
T Consensus 135 v~~~~~~~~~~~~--~~~~~~~~Sa~~~ 160 (175)
T cd01870 135 VKPEEGRDMANKI--GAFGYMECSAKTK 160 (175)
T ss_pred ccHHHHHHHHHHc--CCcEEEEeccccC
Confidence 0001111111 2347999999987
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=131.80 Aligned_cols=142 Identities=23% Similarity=0.327 Sum_probs=92.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|..|+|||||++.++..++. ....||... +....+.. ..+. -.+.+||
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~-~~~~~tig~~~~~~~~~~------------~~~~----------~~l~i~D 68 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFT------------NCGK----------IRFYCWD 68 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCC-CccCCccceeEEEEEEEE------------CCeE----------EEEEEEE
Confidence 5689999999999999999998876543 233444321 11111110 0111 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|||.. .+..+...+++.+|++|+|+|.+++.+.... .++..+.. .+.|+++|.||+|+.......+++ ..
T Consensus 69 t~G~~----~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~-- 141 (219)
T PLN03071 69 TAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TF-- 141 (219)
T ss_pred CCCch----hhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HH--
Confidence 99973 4456677789999999999999987655544 35555543 357999999999985331111111 11
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ....++|.+||+++
T Consensus 142 ---~~---~~~~~~~e~SAk~~ 157 (219)
T PLN03071 142 ---HR---KKNLQYYEISAKSN 157 (219)
T ss_pred ---HH---hcCCEEEEcCCCCC
Confidence 11 13467999999987
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=138.71 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=130.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCC---
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGL--- 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l--- 169 (921)
++++.++.+.+.|++.+|+|+++.....+...+..++++|+. +.+++++ ++++.+...||++||+|...+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~ 112 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENP 112 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhCh
Confidence 677899999999999999999998877778889999999999 8999994 347788899999999999776
Q ss_pred -CHHHHHHhcccCCCCccccCeEEEecC---------------CHHH-HHcccccCCCCEEEeCCCC----CCCCCcc-h
Q 002437 170 -PAIVARNTMKDSMSESVVLPLVGRNVQ---------------TLDA-AFNASSSEGADFLVCCFGE----GQKADVI-E 227 (921)
Q Consensus 170 -~~~~~r~~~~~~~~~~~~~~~ig~S~h---------------~~~e-~~~A~~~~gaDyv~~gpvT----k~~~g~~-~ 227 (921)
....++..+| ++ ++ +++.+++ ++.+ ++.+ ...|+|.+++-+++ ...++.. .
T Consensus 113 ~~~~~i~~~~g---~~-~i--~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~G~~~i~~~~~~~~g~~~g~~~~~i 185 (241)
T PRK13585 113 EIVRELSEEFG---SE-RV--MVSLDAKDGEVVIKGWTEKTGYTPVEAAKRF-EELGAGSILFTNVDVEGLLEGVNTEPV 185 (241)
T ss_pred HHHHHHHHHhC---CC-cE--EEEEEeeCCEEEECCCcccCCCCHHHHHHHH-HHcCCCEEEEEeecCCCCcCCCCHHHH
Confidence 3455566554 44 43 4677775 4444 5555 78999999987762 2233343 5
Q ss_pred hhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 228 NSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++++.+++||++.|||. ++++..+..+|++||++.++.+..
T Consensus 186 ~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 186 KELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 788888899999999998 899999999999999998888765
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=126.89 Aligned_cols=142 Identities=23% Similarity=0.311 Sum_probs=89.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++++.+..+. ....|++......... . ++.. ..+.+|||||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~~~i~Dt~G 58 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVE------------I-DGRQ---------CDLEILDTAG 58 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEE------------E-CCEE---------EEEEEEeCCC
Confidence 68999999999999999999987653 3344444322110000 0 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChHH-HHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAFE-LEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~~-~~~v~~~~~ 518 (921)
.. .+..+...++..+|.+++|+|.+++.+..... +...+. ..+.|+++|.||+|+...... .++...
T Consensus 59 ~~----~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~--- 131 (168)
T cd04177 59 TE----QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS--- 131 (168)
T ss_pred cc----cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH---
Confidence 73 44556777889999999999998764443332 333332 346899999999998654211 111111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.+..+ ..+++++||+.+
T Consensus 132 --~~~~~~--~~~~~~~SA~~~ 149 (168)
T cd04177 132 --LSQQWG--NVPFYETSARKR 149 (168)
T ss_pred --HHHHcC--CceEEEeeCCCC
Confidence 111111 368999999887
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=129.15 Aligned_cols=141 Identities=23% Similarity=0.291 Sum_probs=86.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||++++++..+. ....|++......... .++.. -.+.+|||||.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~~~i~D~~g~ 57 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GEYDPNLESLYSRQVT-------------IDGEQ---------VSLEILDTAGQ 57 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cccCCChHHhceEEEE-------------ECCEE---------EEEEEEECCCC
Confidence 4899999999999999999976553 3344444221111110 01111 13789999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
... .......+++.+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 58 ~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~--- 131 (165)
T cd04146 58 QQA---DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK--- 131 (165)
T ss_pred ccc---ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH---
Confidence 521 1123556778999999999999875555432 3333332 3689999999999853210 1111111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...+ ..+++.+||+.+
T Consensus 132 --~~~~~---~~~~~e~Sa~~~ 148 (165)
T cd04146 132 --LASEL---GCLFFEVSAAED 148 (165)
T ss_pred --HHHHc---CCEEEEeCCCCC
Confidence 11222 357999999876
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-12 Score=153.39 Aligned_cols=172 Identities=22% Similarity=0.250 Sum_probs=103.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-----------CCCcc-ceeEEEEccCCccchhhcccccCCCeEEeec
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDG-----------VVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYL 429 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-----------~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (921)
...++|+++|++++|||||+|+|+...-.... ...+| ..+.+..+.+...++..+......+...+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 35678999999999999999999976432221 12233 2222212222222233333333322222222
Q ss_pred CCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC-h
Q 002437 430 PSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN-A 507 (921)
Q Consensus 430 p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~-~ 507 (921)
+. ..++|+||||... +...+...+..+|++++|+|+..+.+.+..+.+..+...+ +++|+|+||+|+... +
T Consensus 102 ~~---~~~~liDtPG~~~----f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 102 PK---RKFIVADTPGHEQ----YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred CC---ceEEEEECCChHH----HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchh
Confidence 11 3589999999632 2233444578999999999998877655555555555444 678999999999752 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 508 FELEEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
+.++++...+...+.. ++....+++++||+.+.
T Consensus 175 ~~~~~i~~~i~~~~~~-~~~~~~~iipiSA~~g~ 207 (632)
T PRK05506 175 EVFDEIVADYRAFAAK-LGLHDVTFIPISALKGD 207 (632)
T ss_pred HHHHHHHHHHHHHHHH-cCCCCccEEEEecccCC
Confidence 3344444444433332 24445789999999873
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-12 Score=125.99 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=90.1
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
|+++|.+|+|||||++.+.+..+ +....||... ...... .+. ..+.+|||||..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~-~~~~i~--------------~~~----------~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGF-NSVAIP--------------TQD----------AIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cccccccCCc-ceEEEe--------------eCC----------eEEEEEECCCCc
Confidence 78999999999999999998754 2344455431 111110 000 148999999973
Q ss_pred hhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh--hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 002437 447 VILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ--QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMK 523 (921)
Q Consensus 447 ~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~--~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~ 523 (921)
+...++..+++.+|++|||+|.+++.+..+. .++..+. ..+.|+++|.||+|+... ....++.... .+..
T Consensus 56 ----~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~--~~~~ 128 (164)
T cd04162 56 ----NLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA-RSVQEIHKEL--ELEP 128 (164)
T ss_pred ----chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC-CCHHHHHHHh--CChh
Confidence 4456677889999999999999876543322 3444443 256899999999998643 1222222221 1122
Q ss_pred hhCCCCCeEEEecccch
Q 002437 524 LLNIENVTIYPVSARST 540 (921)
Q Consensus 524 ~~~~~~~~v~~vSA~~~ 540 (921)
+.......++.+||+..
T Consensus 129 ~~~~~~~~~~~~Sa~~~ 145 (164)
T cd04162 129 IARGRRWILQGTSLDDD 145 (164)
T ss_pred hcCCCceEEEEeeecCC
Confidence 22224567899999873
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=123.21 Aligned_cols=140 Identities=22% Similarity=0.251 Sum_probs=89.3
Q ss_pred EEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 369 vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
|+|.+|+|||||+|+|.+....+....++........+.... .. ..+.++||||....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~------------~~----------~~~~l~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG------------KK----------VKLQIWDTAGQERF 58 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC------------EE----------EEEEEEecCChHHH
Confidence 579999999999999999876433333333222222221100 00 25899999997432
Q ss_pred hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHH-----HHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 002437 449 LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL-----RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMK 523 (921)
Q Consensus 449 ~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l-----~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~ 523 (921)
......++..+|++++|+|++++.+..+...+ ......+.|+++|+||+|........... ....
T Consensus 59 ----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~---~~~~--- 128 (157)
T cd00882 59 ----RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE---LAEQ--- 128 (157)
T ss_pred ----HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH---HHHH---
Confidence 23346678999999999999987665555432 23345678999999999997653221111 0111
Q ss_pred hhCCCCCeEEEecccch
Q 002437 524 LLNIENVTIYPVSARST 540 (921)
Q Consensus 524 ~~~~~~~~v~~vSA~~~ 540 (921)
.......+++++|++.+
T Consensus 129 ~~~~~~~~~~~~s~~~~ 145 (157)
T cd00882 129 LAKELGVPYFETSAKTG 145 (157)
T ss_pred HHhhcCCcEEEEecCCC
Confidence 11223578999999876
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-12 Score=146.47 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=100.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-----------CCCccc-eeEEEEccCCccchhhcccccCCCeEEeec
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDG-----------VVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYL 429 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-----------~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (921)
...++|+|+|++++|||||+++|+...-.... ...+|. .+.+-.+.+...++..+......+...+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 46789999999999999999999865422111 011221 111111222222333333332222111111
Q ss_pred CCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC-h
Q 002437 430 PSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN-A 507 (921)
Q Consensus 430 p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~-~ 507 (921)
+ -..+.||||||.. .+...+...+..+|++|+|+|+..+...+..+.+..+...+ +++|+|+||+|+... +
T Consensus 105 ~---~~~i~~iDTPGh~----~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 105 E---KRKFIIADTPGHE----QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred C---CcEEEEEECCCcH----HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh
Confidence 1 1358999999963 33233344468999999999998876554444333333333 578999999999743 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 508 FELEEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
+.++++.+.+...+..+-.....+++++||+.+.
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ 211 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGD 211 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCC
Confidence 2344444444433332211335889999999873
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-12 Score=128.22 Aligned_cols=141 Identities=21% Similarity=0.178 Sum_probs=87.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+++|.+|+|||||++.+++..+ +....|++.......+.. ++.- ..+.+|||||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~D~~g 58 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRY-------------KGQD---------YHLEIVDTAG 58 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEE-------------CCEE---------EEEEEEECCC
Confidence 5799999999999999999998764 344555553221111100 0100 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
.. ++......+...+|++++|+|.++..+.+... ++..+ ...+.|+++|+||+|+..... ..++.. .
T Consensus 59 ~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~-~-- 131 (180)
T cd04137 59 QD----EYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK-E-- 131 (180)
T ss_pred hH----hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHH-H--
Confidence 73 34445566788999999999998754433332 22333 234579999999999864311 111111 1
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... ...+++++||+.+
T Consensus 132 --~~~~---~~~~~~~~Sa~~~ 148 (180)
T cd04137 132 --LAES---WGAAFLESSAREN 148 (180)
T ss_pred --HHHH---cCCeEEEEeCCCC
Confidence 1111 2368999999886
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-12 Score=147.05 Aligned_cols=168 Identities=19% Similarity=0.180 Sum_probs=96.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC------------CCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV------------VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~------------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
...+|+++|++++|||||+|+|+...-..... ...+..... ..+...++..+......+...+.+.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~--~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAW--VMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhh--hhccCHhHhhcCccceeeeEEEecC
Confidence 45789999999999999999999654221110 000000000 0011111111111111111111111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCC--CCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC-
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADR--PLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN- 506 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~--~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~- 506 (921)
-..+.||||||... +...+...+..+|++|+|+|+++ +......+.+..+...+ +|+++|+||+|+...
T Consensus 83 ---~~~i~liDtpG~~~----~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 83 ---KYYFTIVDCPGHRD----FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYD 155 (425)
T ss_pred ---CeEEEEEECCCccc----chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccccc
Confidence 12589999999632 22223445678999999999987 55555555555555555 479999999999753
Q ss_pred hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccch
Q 002437 507 AFELEEAISFVKENTMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~ 540 (921)
.+..+.+.+.+.+.+... +. ...+++++||+.+
T Consensus 156 ~~~~~~~~~~i~~~l~~~-g~~~~~~~ii~iSA~~g 190 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMV-GYKPDDIPFIPVSAFEG 190 (425)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCcCcceEEEeecccC
Confidence 233444455555444332 22 2468999999987
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.1e-12 Score=130.28 Aligned_cols=169 Identities=21% Similarity=0.201 Sum_probs=96.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC--CcccccEEEeCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--PILKEMIIVDTP 443 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~l~~l~lvDTP 443 (921)
+|+++|+.++|||||+++|++.............. ...+.+....+..+............++. .....+.+||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~--~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtp 79 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWK--PLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTP 79 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCC--ceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECC
Confidence 58999999999999999999764332210000000 00111111111111111111111111110 001248999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC------Ch---HHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ------NA---FELEEAI 514 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~------~~---~~~~~v~ 514 (921)
|... +...+..++..+|++|+|+|+.+..+.....++..+...+.|+++|+||+|+.. .. +.+.++.
T Consensus 80 G~~~----f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i 155 (213)
T cd04167 80 GHVN----FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHII 155 (213)
T ss_pred CCcc----hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHH
Confidence 9753 334567778899999999999988777666677776666799999999999862 11 2244444
Q ss_pred HHHHHHHHHhhC-------CCCCeEEEecccch
Q 002437 515 SFVKENTMKLLN-------IENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~-------~~~~~v~~vSA~~~ 540 (921)
+.+...+..... +....|++.|++.+
T Consensus 156 ~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~ 188 (213)
T cd04167 156 DEVNNIIASFSTTLSFLFSPENGNVCFASSKFG 188 (213)
T ss_pred HHHHHHHHHhcCCCceEeccCCCeEEEEecCCC
Confidence 555444443311 12234666677655
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=126.54 Aligned_cols=116 Identities=27% Similarity=0.343 Sum_probs=83.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|..++|||||++.+.+..+. ....||.......... .++.. -.+.||||
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~-------------~~~~~---------~~l~iwDt 60 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFE-------------IDTQR---------IELSLWDT 60 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEE-------------ECCEE---------EEEEEEEC
Confidence 3578999999999999999999987653 3455554321111100 01111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQ 505 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~ 505 (921)
+|. +++..+...+++.+|++|+|+|.+++.+..+. .++..++.. ..|+++|.||+|+..
T Consensus 61 aG~----e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 61 SGS----PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred CCc----hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 996 45566777889999999999999988777664 466666543 479999999999864
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=128.17 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=78.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.+.+..+. ....||+......... . ++.. ..+.+|||||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~------------~-~~~~---------~~~~i~Dt~G 57 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP-TEYVPTAFDNFSVVVL------------V-DGKP---------VRLQLCDTAG 57 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEE------------E-CCEE---------EEEEEEECCC
Confidence 47899999999999999999887653 3444444221111100 0 1110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~ 506 (921)
.. +.......++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+...
T Consensus 58 ~~----~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 58 QD----EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred Ch----hhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence 73 3344456678999999999999987665553 46666654 35799999999998754
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=136.50 Aligned_cols=145 Identities=21% Similarity=0.146 Sum_probs=96.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|+++|.||||||||+|+|...+-....+.+||-.+........+ . .++++-|.|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-------------f----------~q~tVADiP 252 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-------------F----------SQITVADIP 252 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-------------c----------ceeEeccCc
Confidence 35689999999999999999999987777888898776654222111 1 248999999
Q ss_pred CCChhh---hHHHHHHHHhcCCCCEEEEEEeCCCCC---CHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHH
Q 002437 444 GTNVIL---QRQQRLTEEFVPRADLVLFVISADRPL---TESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 444 G~~~~~---~~~~~~~~~~l~~aD~il~V~da~~~~---t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|+-... .-..-...+.+.+|+.++||+|.+.+. .-++.+ ++.++.. ..+|.++|+||+|+...++
T Consensus 253 GiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--- 329 (366)
T KOG1489|consen 253 GIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--- 329 (366)
T ss_pred cccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---
Confidence 984221 111223455678999999999999772 223333 2233322 3478999999999863322
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..++.+..+++ .+.|+++||+++
T Consensus 330 ~~l~~L~~~lq------~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 330 NLLSSLAKRLQ------NPHVVPVSAKSG 352 (366)
T ss_pred HHHHHHHHHcC------CCcEEEeeeccc
Confidence 22233333322 346999999987
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=129.49 Aligned_cols=141 Identities=23% Similarity=0.297 Sum_probs=91.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeE--EEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EIT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|.|++.++.+.. .||.. .+. .+.. ++.. -.+.+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~---------------~~~~---------i~l~l 59 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITI---------------DNKP---------IKLQI 59 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEE---------------CCEE---------EEEEE
Confidence 4589999999999999999999988765432 22221 111 1111 1110 13789
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||||. ..+..++..++..+|++|+|+|.+++.+.... .++..+.. ...|+++|.||+|+..... ..++..
T Consensus 60 ~Dt~G~----~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~ 135 (210)
T PLN03108 60 WDTAGQ----ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGE 135 (210)
T ss_pred EeCCCc----HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHH
Confidence 999996 34555677888999999999999877655544 34444432 3579999999999864311 112222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.. .. ...+++.+||+++
T Consensus 136 ~~~----~~----~~~~~~e~Sa~~~ 153 (210)
T PLN03108 136 QFA----KE----HGLIFMEASAKTA 153 (210)
T ss_pred HHH----HH----cCCEEEEEeCCCC
Confidence 221 11 2367999999887
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=125.68 Aligned_cols=114 Identities=28% Similarity=0.352 Sum_probs=81.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|..++|||||++.+.+..+ +....||.......... . ++.. -.+.+|||||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~------------~-~~~~---------~~l~iwDt~G 58 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFE------------I-DEQR---------IELSLWDTSG 58 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEE------------E-CCEE---------EEEEEEECCC
Confidence 6899999999999999999998765 34455554321110000 0 1111 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~ 505 (921)
. +.+..+...+++.+|++|+|+|.+++.+..+. .|+..++. ...|+++|.||+|+..
T Consensus 59 ~----~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 59 S----PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred c----hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 6 34455667788999999999999988777763 46666654 3578999999999864
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=139.96 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=120.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhc
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTM 178 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~ 178 (921)
..++.+.+++++|++.||||.++++.++.++.++++.++|+. |+ +++.++|+.| |++|.
T Consensus 85 ~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv--------~Ve~ElG~~g---g~ed~--------- 144 (282)
T TIGR01859 85 SSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV--------SVEAELGTLG---GIEDG--------- 144 (282)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC--------EEEEeeCCCc---Ccccc---------
Confidence 357899999999999999999999999999999999999999 75 3666677765 44331
Q ss_pred ccCCCCccccCeEE--EecCCHHHHHccccc-CCCCEEE--eCCC----CC-CCCCcc-hhhhhhcCCCCEEEEc--CCC
Q 002437 179 KDSMSESVVLPLVG--RNVQTLDAAFNASSS-EGADFLV--CCFG----EG-QKADVI-ENSLFTNVKIPIFIMN--ASP 245 (921)
Q Consensus 179 ~~~~~~~~~~~~ig--~S~h~~~e~~~A~~~-~gaDyv~--~gpv----Tk-~~~g~~-~~~~~~~~~~Pv~aiG--Gi~ 245 (921)
++| .|+|+++|+.++ .+ .|+||+. +||+ ++ +..+++ ++++++.+++|+|++| ||+
T Consensus 145 -----------~~g~~~~~t~~eea~~f-~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~ 212 (282)
T TIGR01859 145 -----------VDEKEAELADPDEAEQF-VKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP 212 (282)
T ss_pred -----------ccccccccCCHHHHHHH-HHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC
Confidence 234 689999999999 65 8999999 7886 23 334555 6888988999999999 999
Q ss_pred ccChHHHHHcCCcEEEEeecccccchHHHHHhh
Q 002437 246 LVDVSKFLKSGASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 246 ~~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~~ 278 (921)
.+|+..+.++|+.+|++.......|...+.+.+
T Consensus 213 ~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~ 245 (282)
T TIGR01859 213 EEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVL 245 (282)
T ss_pred HHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHH
Confidence 999999999999999887777666666665544
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=134.20 Aligned_cols=148 Identities=22% Similarity=0.356 Sum_probs=94.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC--------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVV--------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~--------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
.++|+++|.+|+|||||+|+|++..+.+.... +.|..+...... ...+|.. -
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~-----------i~~~g~~---------~ 63 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAE-----------IEENGVK---------L 63 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEE-----------EEECCEE---------E
Confidence 58999999999999999999999987654321 112111111110 0111211 1
Q ss_pred ccEEEeCCCCChhhh---HHHHHH-----------H--------Hhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhc
Q 002437 436 EMIIVDTPGTNVILQ---RQQRLT-----------E--------EFV--PRADLVLFVISADR-PLTESEVVFLRYTQQW 490 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~---~~~~~~-----------~--------~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~~ 490 (921)
.+++|||||+++... ....++ . ..+ .++|+++|+++... ..+..+.++++.+..
T Consensus 64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~- 142 (276)
T cd01850 64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK- 142 (276)
T ss_pred EEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-
Confidence 489999999864311 011110 0 112 25899999999874 677888999999986
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+.|+++|+||+|+.. .+++....+.+.+.+.. ...++|+...
T Consensus 143 ~v~vi~VinK~D~l~-~~e~~~~k~~i~~~l~~----~~i~~~~~~~ 184 (276)
T cd01850 143 RVNIIPVIAKADTLT-PEELKEFKQRIMEDIEE----HNIKIYKFPE 184 (276)
T ss_pred cCCEEEEEECCCcCC-HHHHHHHHHHHHHHHHH----cCCceECCCC
Confidence 789999999999984 34555555555555444 2455665544
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=147.35 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=94.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC--CCcccccEEEe
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP--SPILKEMIIVD 441 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p--~~~l~~l~lvD 441 (921)
..+|+++|+.++|||||+++|+...-........+ .+.+....+.++........+.+.+. ..--..+.|||
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~------~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liD 76 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMRE------QVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLID 76 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccc------cccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEE
Confidence 46899999999999999999987532111100000 00010000111111111111111111 00002489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||... +...+..++..+|++|+|+|++++.+.+....+..+...+.|+++|+||+|+.... .+++.+.+
T Consensus 77 TPG~~d----F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~--~~~~~~el---- 146 (595)
T TIGR01393 77 TPGHVD----FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD--PERVKKEI---- 146 (595)
T ss_pred CCCcHH----HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC--HHHHHHHH----
Confidence 999843 44456778899999999999998877776665555556678999999999986431 12222222
Q ss_pred HHhhCCCCCeEEEecccch
Q 002437 522 MKLLNIENVTIYPVSARST 540 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.++.....++++||+++
T Consensus 147 ~~~lg~~~~~vi~vSAktG 165 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTG 165 (595)
T ss_pred HHHhCCCcceEEEeeccCC
Confidence 2333433346899999987
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=145.59 Aligned_cols=131 Identities=18% Similarity=0.257 Sum_probs=84.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc-ccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI-LKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-l~~l~lvD 441 (921)
+++.|+++|++++|||||+|+|.+..+........|..+......... . . ...+.....++... +.+++|||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~-~--~----~~~~~~~~~~~~~~~~~~i~~iD 77 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDV-I--E----KIAGPLKKPLPIKLKIPGLLFID 77 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccc-c--c----cccceeccccccccccCCEEEEE
Confidence 578999999999999999999998765432222223222111110000 0 0 00010000011100 12489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY 504 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~ 504 (921)
|||.. .+..++...+..+|++++|+|++++...+....+..+...+.|+++++||+|+.
T Consensus 78 TPG~e----~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 78 TPGHE----AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CCChH----HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 99974 344455667788999999999998777777777777777889999999999986
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=130.26 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=82.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|..++|||||++.+.+..+. ....||......... ..++.. ..+.|||||
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~i-------------~~~~~~---------v~l~iwDTa 69 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTAGL-------------ETEEQR---------VELSLWDTS 69 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeeeEEEE-------------EECCEE---------EEEEEEeCC
Confidence 478999999999999999999987653 344555432111100 001111 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH--HHHHHHhhh--cCCeEEEEEeCCCCCC
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE--VVFLRYTQQ--WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e--~~~l~~l~~--~~~~vivVlNK~D~~~ 505 (921)
|. +.+..+...++..+|++|+|+|.+++.+... ..|+..+.. ...|+|+|.||+|+..
T Consensus 70 G~----e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 70 GS----PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred Cc----hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 96 4556677789999999999999998877665 246666654 2568999999999853
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=129.57 Aligned_cols=145 Identities=19% Similarity=0.241 Sum_probs=99.7
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...+..|+|+|.+|+|||||+|+|++..... ........++.... ....++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-~~~~~~g~i~i~~~--------------------------~~~~i~~v 88 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-NISDIKGPITVVTG--------------------------KKRRLTFI 88 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-ccccccccEEEEec--------------------------CCceEEEE
Confidence 3567889999999999999999998752110 00000000111100 01358999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-ivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||||.. ..+.+.+..+|++++|+|+..+....+..++..+...+.|. ++|+||+|+..+....+++.+.++.
T Consensus 89 DtPg~~-------~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~ 161 (225)
T cd01882 89 ECPNDI-------NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKH 161 (225)
T ss_pred eCCchH-------HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHH
Confidence 999842 22344568899999999999888888888888888777775 5599999998654446666666666
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+...+. ...+|+++||++.
T Consensus 162 ~~~~~~~-~~~ki~~iSa~~~ 181 (225)
T cd01882 162 RFWTEVY-QGAKLFYLSGIVH 181 (225)
T ss_pred HHHHhhC-CCCcEEEEeeccC
Confidence 5543322 3579999999876
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=138.36 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc
Q 002437 102 LDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKD 180 (921)
Q Consensus 102 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~ 180 (921)
++.+.+|+++|++.||+|.+.++.++.++.+++++++|+. |+.| +.++| |++..
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v--------E~ElG----~i~g~------------- 143 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV--------EAEVG----TIGGE------------- 143 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE--------EEecC----cccCc-------------
Confidence 5789999999999999999999999999999999999999 8877 44444 23210
Q ss_pred CCCCccccCeEEEec-CCHHHHHcccccCCCCEEEeC--CC-----CC-CCCCcc-hhhhhhcC-CCCEEEEcC--CCcc
Q 002437 181 SMSESVVLPLVGRNV-QTLDAAFNASSSEGADFLVCC--FG-----EG-QKADVI-ENSLFTNV-KIPIFIMNA--SPLV 247 (921)
Q Consensus 181 ~~~~~~~~~~ig~S~-h~~~e~~~A~~~~gaDyv~~g--pv-----Tk-~~~g~~-~~~~~~~~-~~Pv~aiGG--i~~~ 247 (921)
++ +++|.|+ |+++++.++ .+.|+||+.+| |+ |+ +..+++ ++++.+.+ ++|++++|| |+.+
T Consensus 144 --ed----~~~g~s~~t~peea~~f-~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e 216 (293)
T PRK07315 144 --ED----GIIGKGELAPIEDAKAM-VETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDD 216 (293)
T ss_pred --Cc----cccCccCCCCHHHHHHH-HHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHH
Confidence 12 1577788 999999999 79999999999 88 32 334555 68888888 599999999 9999
Q ss_pred ChHHHHHcCCcEEEEeecccccchHHHH
Q 002437 248 DVSKFLKSGASGFVISLEDLSLFNDGVL 275 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~~~~~~~~ 275 (921)
|+..+.++|+.+|+++++....|...+.
T Consensus 217 ~~~~~i~~Gi~KiNv~T~i~~~~~~~~~ 244 (293)
T PRK07315 217 QIQEAIKLGVAKVNVNTECQIAFANATR 244 (293)
T ss_pred HHHHHHHcCCCEEEEccHHHHHHHHHHH
Confidence 9999999999999998888765554444
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.5e-12 Score=142.36 Aligned_cols=169 Identities=21% Similarity=0.197 Sum_probs=100.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-----------CCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGV-----------VPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-----------~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
++|+|+|+.++|||||+++|+...-..... ..++ ..+.+-...+...++.++......+...+.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 479999999999999999998653221110 1111 122222223333333344433333322222221
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCCh-HHH
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNA-FEL 510 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~-~~~ 510 (921)
..+.|+||||... +...+...+..+|++|+|+|+..+...+..+.+..+...+ +++|+|+||+|+.... +.+
T Consensus 80 --~~~~liDtPGh~~----f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~ 153 (406)
T TIGR02034 80 --RKFIVADTPGHEQ----YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVF 153 (406)
T ss_pred --eEEEEEeCCCHHH----HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHH
Confidence 3589999999643 3333445678999999999999877666655555555544 4689999999997532 223
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
+++.+.+...+.. ++....+++++||+.+.
T Consensus 154 ~~i~~~~~~~~~~-~~~~~~~iipiSA~~g~ 183 (406)
T TIGR02034 154 ENIKKDYLAFAEQ-LGFRDVTFIPLSALKGD 183 (406)
T ss_pred HHHHHHHHHHHHH-cCCCCccEEEeecccCC
Confidence 3344443333222 24345789999999873
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-12 Score=122.37 Aligned_cols=140 Identities=24% Similarity=0.309 Sum_probs=82.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++.. .+....+++. ......+.. ++.. ..+.++|||
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D~~ 58 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEE-------------DGKT---------YKFNLLDTA 58 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEE-------------CCEE---------EEEEEEECC
Confidence 689999999999999999999988 5555544433 222211111 1100 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|.. ........+...++.+++++|.... .......+.... ..+.|+++|+||+|+.... ....
T Consensus 59 G~~----~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-----~~~~ 128 (161)
T TIGR00231 59 GQE----DYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAK-----LKTH 128 (161)
T ss_pred Ccc----cchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcch-----hhHH
Confidence 963 2233344445566666666665433 111111122222 2278999999999997542 2222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
....+... ...+++++||+.+
T Consensus 129 ~~~~~~~~---~~~~~~~~sa~~~ 149 (161)
T TIGR00231 129 VAFLFAKL---NGEPIIPLSAETG 149 (161)
T ss_pred HHHHHhhc---cCCceEEeecCCC
Confidence 22222222 2456999999887
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=124.08 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=83.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|..++|||||+..+....+. ....||.......... .++.. -.+.||||+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~~~~~Ti~~~~~~~~~-------------~~~~~---------v~l~i~Dt~G 58 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVS-------------VDGNT---------VNLGLWDTAG 58 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcceeeeEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 57999999999999999999987763 3455655322111110 01211 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~ 505 (921)
. +++..+...+++.+|++|+|+|.+++.+..+. .++..++. .+.|+++|.||+|+..
T Consensus 59 ~----~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 59 Q----EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred C----ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 7 34555677789999999999999988877765 46776653 3579999999999964
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=129.13 Aligned_cols=148 Identities=24% Similarity=0.324 Sum_probs=94.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCC--CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGV--VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~--~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.+|+++|.+|+||||++|.|+|.+..+++. .++|.......... +| +.+++|||
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-------------~g-----------~~v~VIDT 56 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-------------DG-----------RQVTVIDT 56 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-------------TT-----------EEEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-------------cc-----------eEEEEEeC
Confidence 379999999999999999999999887653 34554444332211 12 25899999
Q ss_pred CCCChhhhHHH---HHHHH----hcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh-----cCCeEEEEEeCCCCCCChHHH
Q 002437 443 PGTNVILQRQQ---RLTEE----FVPRADLVLFVISADRPLTESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 443 PG~~~~~~~~~---~~~~~----~l~~aD~il~V~da~~~~t~~e~~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~ 510 (921)
||+.+...... ..+.+ ..+..|++|||++.+ .++..+...++.+.. .-+.+++|+|.+|...+. .+
T Consensus 57 PGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-~~ 134 (212)
T PF04548_consen 57 PGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-SL 134 (212)
T ss_dssp -SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-TH
T ss_pred CCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-cH
Confidence 99965432222 22222 236789999999998 789999988887754 225799999999988653 34
Q ss_pred HHHHHH-HHHHHHHhhCCCCCeEEEeccc
Q 002437 511 EEAISF-VKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 511 ~~v~~~-~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
++..+. ....++.++.....+++.++.+
T Consensus 135 ~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 135 EDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred HHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 444442 2234555655556788888876
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=144.86 Aligned_cols=188 Identities=18% Similarity=0.119 Sum_probs=114.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|+.++|||||+++|+...-........+. ...+....+.++..........+.+.. ..+.||||||
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~-----~~~D~~~~ErerGiTI~~~~~~v~~~~---~kinlIDTPG 73 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE-----RVMDSNDLERERGITILAKNTAIRYNG---TKINIVDTPG 73 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee-----ecccCchHHHhCCccEEeeeEEEEECC---EEEEEEECCC
Confidence 47999999999999999999864211111110110 111111122222222211111112211 2589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
..+ +...+..++..+|++|+|+|+..+...+...++..+...+.|+++|+||+|+... ...++.+.+.+.+..+
T Consensus 74 h~D----F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a--~~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 74 HAD----FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSA--RPDEVVDEVFDLFAEL 147 (594)
T ss_pred HHH----HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCc--CHHHHHHHHHHHHHhh
Confidence 743 3345677889999999999999877777778888888889999999999998643 2234444444444322
Q ss_pred hCC---CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 525 LNI---ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 525 ~~~---~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
-.. ...+++++||+.+....... ....|+..|.+.+.+.+..
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~-----------------~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLD-----------------DPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccccCcEEechhhcCcccccCc-----------------ccccCHHHHHHHHHHhCCC
Confidence 111 24689999999884321110 0134677777777776654
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-11 Score=126.21 Aligned_cols=147 Identities=27% Similarity=0.289 Sum_probs=94.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|..|+|||||++.+.+..+ +..+.||........+. .++.. ..+.||||+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~-------------~~~~~---------v~L~iwDt~G 58 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFE-------------IDKRR---------IELNMWDTSG 58 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEE-------------ECCEE---------EEEEEEeCCC
Confidence 6899999999999999999998765 44556665322111110 11221 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-H-HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHH-------
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-V-FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEA------- 513 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~-~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v------- 513 (921)
. +.+..+...+++.+|++|+|+|.+++.+..+. . +...+.. .+.|+++|.||+|+..+.......
T Consensus 59 ~----e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~p 134 (222)
T cd04173 59 S----SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIP 134 (222)
T ss_pred c----HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCc
Confidence 6 34556677788999999999999987666554 2 3333433 357999999999997542221111
Q ss_pred -HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 -ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 -~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.......+.+.++ ..+++.+||+++
T Consensus 135 Is~e~g~~~ak~~~--~~~y~E~SAk~~ 160 (222)
T cd04173 135 VTHEQGTVLAKQVG--AVSYVECSSRSS 160 (222)
T ss_pred cCHHHHHHHHHHcC--CCEEEEcCCCcC
Confidence 1111122222222 247889999875
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=127.85 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=66.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.-+|+++|.||+|||||+|.|++.+.-+.++.+||..+........+ -.+.++|+|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g------------------------a~IQild~P 118 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG------------------------AQIQLLDLP 118 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC------------------------ceEEEEcCc
Confidence 35899999999999999999999998888888888765433222111 148999999
Q ss_pred CCChhhh---HHHHHHHHhcCCCCEEEEEEeCCCCCC
Q 002437 444 GTNVILQ---RQQRLTEEFVPRADLVLFVISADRPLT 477 (921)
Q Consensus 444 G~~~~~~---~~~~~~~~~l~~aD~il~V~da~~~~t 477 (921)
|+-.... .....+...++.||+|++|+|+..+..
T Consensus 119 gii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 119 GIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPH 155 (365)
T ss_pred ccccCcccCCCCcceeeeeeccCCEEEEEEecCCChh
Confidence 9842211 112346667799999999999986543
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-12 Score=133.27 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=119.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH----HHHHHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCe--EEcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG----KSVYEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASG--VLLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~----~~~~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~G--vHL~~~~ 168 (921)
.+.+.++.+.++|+++||||.++.+- ....+.++++++.|. . ++.|++|| +++.+.++|+|| ||.++.+
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~~~ 96 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEASE 96 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeeccch
Confidence 77889999999999999999987642 113678888888885 5 68899999 999999999999 9998877
Q ss_pred CCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEeCCC----CCCCC---Ccc-hhhhhhcCC---
Q 002437 169 LPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVCCFG----EGQKA---DVI-ENSLFTNVK--- 235 (921)
Q Consensus 169 l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~gpv----Tk~~~---g~~-~~~~~~~~~--- 235 (921)
.+....+...+ .+ . .+|.+| |+..+..++ ...++||+.++|+ |+... ++. ...+++..+
T Consensus 97 ~~~~~~~~~~~---~~-~---~~g~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~ 168 (220)
T PRK05581 97 HIHRLLQLIKS---AG-I---KAGLVLNPATPLEPLED-VLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERG 168 (220)
T ss_pred hHHHHHHHHHH---cC-C---EEEEEECCCCCHHHHHH-HHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcC
Confidence 66555555543 23 2 567777 566666555 4567999999987 33211 222 233333222
Q ss_pred --CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 236 --IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 236 --~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.||.+.|||+++|+.++.++|+++|++.++.++.
T Consensus 169 ~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 169 LDILIEVDGGINADNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 3356779999999999999999999999998864
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-10 Score=125.10 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCccHHH-HHHHHHHHh-cCCCCeEEEEEeCCCCCHHHHHHHHHC------CCCCCCCC
Q 002437 323 EKQLIETERSVLLEAIDVIKKASPLMEE-VSLLIDAVS-QIDEPFLLVIVGEYNSGKSSVINALLG------KRYLKDGV 394 (921)
Q Consensus 323 ~~~~~e~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~~~-~~~~~~~I~vvG~~~aGKSTLiNaLlg------~~~~~~~~ 394 (921)
.+.++..+++.+.+.++.++...+.... ..++.+... ....++.|+|+|.+|+|||||++.|.. .++.....
T Consensus 13 ~~~~~~g~~~a~a~~it~~e~~~~~~~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~ 92 (332)
T PRK09435 13 VEGVLAGDRAALARAITLVESTRPDHRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92 (332)
T ss_pred HHHHHcCCHHHHHHHHHHHhCCCchhhHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 4556677889999999999987664321 223444333 356789999999999999999998753 23332233
Q ss_pred CCccceeEEEEccCCccchhhcccccCCCeEEeecC-------------------CCcccccEEEeCCCCChhhhHHHHH
Q 002437 395 VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP-------------------SPILKEMIIVDTPGTNVILQRQQRL 455 (921)
Q Consensus 395 ~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p-------------------~~~l~~l~lvDTPG~~~~~~~~~~~ 455 (921)
.|++...- ..-.+...........++.++...+ .....+++||||+|++... ..
T Consensus 93 Dp~s~~~~---gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~---~~- 165 (332)
T PRK09435 93 DPSSTRTG---GSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSE---TA- 165 (332)
T ss_pred CCCccccc---hhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccch---hH-
Confidence 33221000 0000000000000000111111100 0011368999999986221 11
Q ss_pred HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHH-hhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh---CCCCCe
Q 002437 456 TEEFVPRADLVLFVISADRPLTESEVVFLRY-TQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL---NIENVT 531 (921)
Q Consensus 456 ~~~~l~~aD~il~V~da~~~~t~~e~~~l~~-l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~ 531 (921)
....||++++|++.. +..+.+.++. +.+ ..-++|+||+|+.... ........+...+...- ..+.++
T Consensus 166 ---i~~~aD~vlvv~~p~---~gd~iq~~k~gi~E--~aDIiVVNKaDl~~~~-~a~~~~~el~~~L~l~~~~~~~w~~p 236 (332)
T PRK09435 166 ---VAGMVDFFLLLQLPG---AGDELQGIKKGIME--LADLIVINKADGDNKT-AARRAAAEYRSALRLLRPKDPGWQPP 236 (332)
T ss_pred ---HHHhCCEEEEEecCC---chHHHHHHHhhhhh--hhheEEeehhcccchh-HHHHHHHHHHHHHhcccccccCCCCC
Confidence 356799999997633 3344433332 222 2238999999998542 33334444444333211 124478
Q ss_pred EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 532 IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 532 v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
|+++||+++ .|+++|.+.+.+++..
T Consensus 237 Vi~vSA~~g---------------------------~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 237 VLTCSALEG---------------------------EGIDEIWQAIEDHRAA 261 (332)
T ss_pred EEEEECCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 999999887 7999999999887653
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=143.46 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=108.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc--ccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI--LKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~--l~~l~lv 440 (921)
...+|+++|+.++|||||+++|+...-........+ .+.+....+.++........+.+.|.... -..+.||
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~------~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLi 79 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKA------QVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLI 79 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCccccccc------ccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEE
Confidence 456899999999999999999986421110000000 01111111112222222222212121000 1248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
||||..+ +...+..++..+|++|+|+|++++........+..+...+.|+++|+||+|+... +.+.+.+.+
T Consensus 80 DTPGh~d----F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a--~~~~v~~ei--- 150 (600)
T PRK05433 80 DTPGHVD----FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA--DPERVKQEI--- 150 (600)
T ss_pred ECCCcHH----HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc--cHHHHHHHH---
Confidence 9999853 3344667788999999999999887777666666666678899999999998643 122222332
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.++.....++++||+++ .|+++|.+.|.+.+..
T Consensus 151 -~~~lg~~~~~vi~iSAktG---------------------------~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 151 -EDVIGIDASDAVLVSAKTG---------------------------IGIEEVLEAIVERIPP 185 (600)
T ss_pred -HHHhCCCcceEEEEecCCC---------------------------CCHHHHHHHHHHhCcc
Confidence 2334433346999999987 5777777777666553
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=128.96 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=59.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|+|.........++|..+....... .+ ..+.++||||+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-------------~~-----------~~i~l~DtpG~ 57 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-------------KG-----------AKIQLLDLPGI 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-------------CC-----------eEEEEEECCCc
Confidence 5899999999999999999998755555556664433221110 01 24889999998
Q ss_pred Chhhh---HHHHHHHHhcCCCCEEEEEEeCCCC
Q 002437 446 NVILQ---RQQRLTEEFVPRADLVLFVISADRP 475 (921)
Q Consensus 446 ~~~~~---~~~~~~~~~l~~aD~il~V~da~~~ 475 (921)
....+ ........+++.+|++++|+|++++
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 58 IEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred ccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 53321 1222345678999999999998754
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=143.53 Aligned_cols=165 Identities=21% Similarity=0.164 Sum_probs=100.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+++|+.++|||||+++|+...-....... +.. +...+... +.++..........+.+. -..+.+|||
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~-~~~-~v~D~~~~---E~erGiTi~~~~~~i~~~---~~~inliDT 75 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE-TQE-RVMDSNDL---EKERGITILAKNTAIKWN---DYRINIVDT 75 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccc-cce-eeeccccc---cccCceEEEEEEEEEecC---CEEEEEEEC
Confidence 4678999999999999999999974211100000 000 11111111 111111100000001110 025899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||.... ...+..+++.+|++|+|+|+..+...+....+..+...+.|+++|+||+|+... ..+++.+.+.+.+.
T Consensus 76 PG~~df----~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a--~~~~vl~ei~~l~~ 149 (607)
T PRK10218 76 PGHADF----GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA--RPDWVVDQVFDLFV 149 (607)
T ss_pred CCcchh----HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC--chhHHHHHHHHHHh
Confidence 997533 345677889999999999999877777777788878888999999999998643 23334444444433
Q ss_pred Hhh---CCCCCeEEEecccchH
Q 002437 523 KLL---NIENVTIYPVSARSTL 541 (921)
Q Consensus 523 ~~~---~~~~~~v~~vSA~~~l 541 (921)
.+- .....||+++||+.+.
T Consensus 150 ~l~~~~~~~~~PVi~~SA~~G~ 171 (607)
T PRK10218 150 NLDATDEQLDFPIVYASALNGI 171 (607)
T ss_pred ccCccccccCCCEEEeEhhcCc
Confidence 211 1135789999999985
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=134.15 Aligned_cols=148 Identities=21% Similarity=0.291 Sum_probs=112.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+++|.|.++|+...|||||+.+|.+..+........|..+-. +...+| ..+.++|+|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGA---------------------F~V~~p--~G~~iTFLD 207 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGA---------------------FTVTLP--SGKSITFLD 207 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceece---------------------EEEecC--CCCEEEEec
Confidence 368999999999999999999999998876666655554322 222222 124699999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH-
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN- 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~- 520 (921)
|||. ..+..+..+-..-+|.|++|+.++++...+..+.++..+..+.|+++.+||+|.... ..+.+++.+...
T Consensus 208 TPGH----aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a--~pekv~~eL~~~g 281 (683)
T KOG1145|consen 208 TPGH----AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA--NPEKVKRELLSQG 281 (683)
T ss_pred CCcH----HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC--CHHHHHHHHHHcC
Confidence 9996 344455666678899999999999999999999999999999999999999997654 344454444322
Q ss_pred --HHHhhCCCCCeEEEecccch
Q 002437 521 --TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 --~~~~~~~~~~~v~~vSA~~~ 540 (921)
+..+ | .+++++++||+++
T Consensus 282 i~~E~~-G-GdVQvipiSAl~g 301 (683)
T KOG1145|consen 282 IVVEDL-G-GDVQVIPISALTG 301 (683)
T ss_pred ccHHHc-C-CceeEEEeecccC
Confidence 1222 2 3689999999997
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=129.97 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=88.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|..|+|||||+++|+...-............+. .+....+..+..........+.+.. ..+.+|||||.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~---~D~~~~e~~rg~ti~~~~~~~~~~~---~~i~liDTPG~ 74 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTR---TDTMELERQRGITIFSAVASFQWED---TKVNLIDTPGH 74 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCccc---CCCchhHhhCCCceeeeeEEEEECC---EEEEEEeCCCc
Confidence 48999999999999999998653221111100000000 1111111112111111111111111 25899999998
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
... ...+..+++.+|++++|+|+..+.......++..+...+.|+++|+||+|+... +.+++.+.+++.+
T Consensus 75 ~~f----~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a--~~~~~~~~i~~~~ 144 (237)
T cd04168 75 MDF----IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA--DLEKVYQEIKEKL 144 (237)
T ss_pred cch----HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCC--CHHHHHHHHHHHH
Confidence 533 334667888999999999999888777777888888888999999999998753 3355555555543
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=135.39 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=113.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
++|.|.++|+...|||||+..+.+.++.+.....-|..+-.++...... ..+.++|+||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~---------------------~~~~itFiDT 62 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI---------------------KIPGITFIDT 62 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC---------------------CCceEEEEcC
Confidence 6799999999999999999999999998877777777665544332110 1136999999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH--
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN-- 520 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~-- 520 (921)
||. +.+..+..+-..-+|.+++|++++++...+..+-+..++..+.|+++.+||+|.... ....+...+.+.
T Consensus 63 PGH----eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~--np~~v~~el~~~gl 136 (509)
T COG0532 63 PGH----EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA--NPDKVKQELQEYGL 136 (509)
T ss_pred CcH----HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC--CHHHHHHHHHHcCC
Confidence 996 344455555568899999999999999999999999999999999999999999854 233333333322
Q ss_pred HHHhhCCCCCeEEEecccch
Q 002437 521 TMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+.++ ....++++||+++
T Consensus 137 ~~E~~g-g~v~~VpvSA~tg 155 (509)
T COG0532 137 VPEEWG-GDVIFVPVSAKTG 155 (509)
T ss_pred CHhhcC-CceEEEEeeccCC
Confidence 111122 3588999999998
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=136.67 Aligned_cols=114 Identities=27% Similarity=0.255 Sum_probs=76.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v 513 (921)
.+.++||||.. .+...+...+..+|++++|+|++++. ..+..+.+..+...+ +|+++|+||+|+... +...+.
T Consensus 81 ~i~liDtPGh~----~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-~~~~~~ 155 (406)
T TIGR03680 81 RVSFVDAPGHE----TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-EKALEN 155 (406)
T ss_pred EEEEEECCCHH----HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-HHHHHH
Confidence 58999999973 33344556667899999999999765 444445555555544 579999999999853 233333
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.+.+.+... .....+++++||+.+ .|++.|.+.|...+.
T Consensus 156 ~~~i~~~l~~~-~~~~~~ii~vSA~~g---------------------------~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGT-VAENAPIIPVSALHN---------------------------ANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhc-ccCCCeEEEEECCCC---------------------------CChHHHHHHHHHhCC
Confidence 33333322222 123578999999987 577888888877654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=123.78 Aligned_cols=146 Identities=22% Similarity=0.299 Sum_probs=94.4
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.....+|+++|..||||||+++.|...+... ..||.. +....... .+ ..+.++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~--~~pT~g-~~~~~i~~-------------~~-----------~~~~~~ 63 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE--TIPTIG-FNIEEIKY-------------KG-----------YSLTIW 63 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE--EEEESS-EEEEEEEE-------------TT-----------EEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc--cCcccc-cccceeee-------------Cc-----------EEEEEE
Confidence 3567899999999999999999999765432 334432 22211111 01 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHh-h---hcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYT-Q---QWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l-~---~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|.+|.. .....+..|+..+|++|||+|++++....+ ...|..+ . -.+.|+++++||.|..... ..+++..
T Consensus 64 d~gG~~----~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-~~~~i~~ 138 (175)
T PF00025_consen 64 DLGGQE----SFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-SEEEIKE 138 (175)
T ss_dssp EESSSG----GGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-THHHHHH
T ss_pred eccccc----cccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc-hhhHHHh
Confidence 999963 334567888999999999999987543222 2334333 2 2468999999999987542 2233333
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+. +..+-......|+.+||.++
T Consensus 139 ~l~--l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 139 YLG--LEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp HTT--GGGTTSSSCEEEEEEBTTTT
T ss_pred hhh--hhhcccCCceEEEeeeccCC
Confidence 321 11221245678999999987
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-10 Score=122.99 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=80.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+||||++|+|+|.++...+. .++|...+..... .+| ..+.+||
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~-------------~~G-----------~~l~VID 92 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT-------------RAG-----------FTLNIID 92 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE-------------ECC-----------eEEEEEE
Confidence 56899999999999999999999998754333 2333222221110 012 2589999
Q ss_pred CCCCChhhh---HHHHHHHHhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhc-----CCeEEEEEeCCCCCCC
Q 002437 442 TPGTNVILQ---RQQRLTEEFV--PRADLVLFVISADR-PLTESEVVFLRYTQQW-----KKKVVFVLNKSDLYQN 506 (921)
Q Consensus 442 TPG~~~~~~---~~~~~~~~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~~-----~~~vivVlNK~D~~~~ 506 (921)
|||+.+... ........++ ...|+||||.+.+. ..+..+.++++.+... -.++|+|+|++|..++
T Consensus 93 TPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 93 TPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 999975421 2223334443 36999999976542 4677778877777652 2689999999998743
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=139.38 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=126.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC---------cHHHHHh
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE---------RVDIAAA 156 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd---------~~dla~~ 156 (921)
+|++..|.. ..++.++.+++++++|+++++. +. ........+.++.+|+. +..+|+|| +++.|.+
T Consensus 5 ~l~~alD~~-~~~~~~~~~~~~~~~Gv~~ie~---g~-p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~ 79 (430)
T PRK07028 5 ILQVALDLL-ELDRAVEIAKEAVAGGADWIEA---GT-PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAK 79 (430)
T ss_pred eEEEEeccC-CHHHHHHHHHHHHhcCCcEEEe---CC-HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHH
Confidence 566666653 3457889999999999999985 33 23335567888899987 67899999 9999999
Q ss_pred CCCCeEEc-CCCCC-CHH----HHHHhcccCCCCccccCeEE-EecCC-HHHHHcccccCCCCEEEeCCC-CCC---CCC
Q 002437 157 VNASGVLL-SDQGL-PAI----VARNTMKDSMSESVVLPLVG-RNVQT-LDAAFNASSSEGADFLVCCFG-EGQ---KAD 224 (921)
Q Consensus 157 ~~a~GvHL-~~~~l-~~~----~~r~~~~~~~~~~~~~~~ig-~S~h~-~~e~~~A~~~~gaDyv~~gpv-Tk~---~~g 224 (921)
+|+||||+ ++.+. +.. .+|. .| .. . .+| .|+++ .+.+..| .+.|+||+.++|. ++. +.+
T Consensus 80 aGAdgV~v~g~~~~~~~~~~i~~a~~-~G---~~-~---~~g~~s~~t~~e~~~~a-~~~GaD~I~~~pg~~~~~~~~~~ 150 (430)
T PRK07028 80 AGADIVCILGLADDSTIEDAVRAARK-YG---VR-L---MADLINVPDPVKRAVEL-EELGVDYINVHVGIDQQMLGKDP 150 (430)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHH-cC---CE-E---EEEecCCCCHHHHHHHH-HhcCCCEEEEEeccchhhcCCCh
Confidence 99999996 65442 222 3333 23 22 1 344 58876 5667887 7899999999997 332 223
Q ss_pred cc-hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++ .+++++..++||+++|||+++|+.++.++||+||++.++.++.
T Consensus 151 ~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 151 LELLKEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred HHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCC
Confidence 33 4677777789999999999999999999999999999888764
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.3e-11 Score=135.62 Aligned_cols=184 Identities=22% Similarity=0.232 Sum_probs=103.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCC--CCCC-CCCccceeEEEEccCCc--c----chhhcccccCC-CeEEeecC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRY--LKDG-VVPTTNEITFLRFSDLA--S----EEQQRCERHPD-GQYICYLP 430 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~--~~~~-~~~tT~~~~~~~~~~~~--~----~~~~~~~~~~~-g~~~~~~p 430 (921)
..+.++|+++|+.++|||||+.+|.+... .+.. ....|............ . ........... + .+
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 80 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCG-----SE 80 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccc-----cc
Confidence 34678999999999999999999977421 1100 00112111110000000 0 00000000000 0 00
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChH
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~ 508 (921)
......+.|+||||.. .+...+...+..+|++++|+|++++. .......+..+...+ +|+++|+||+|+... +
T Consensus 81 ~~~~~~i~liDtPG~~----~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~-~ 155 (411)
T PRK04000 81 TELLRRVSFVDAPGHE----TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK-E 155 (411)
T ss_pred cccccEEEEEECCCHH----HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc-h
Confidence 0001358999999963 33333444456789999999999875 455555555555554 479999999999754 2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.....+.+...+... .....+++++||+.+ .|++.|.+.|.+.+.
T Consensus 156 ~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g---------------------------~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 156 RALENYEQIKEFVKGT-VAENAPIIPVSALHK---------------------------VNIDALIEAIEEEIP 201 (411)
T ss_pred hHHHHHHHHHHHhccc-cCCCCeEEEEECCCC---------------------------cCHHHHHHHHHHhCC
Confidence 2222223333322211 123578999999987 678888888877654
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=139.04 Aligned_cols=171 Identities=20% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC---------CCc-cceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV---------VPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~---------~~t-T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
..++|+++|+.++|||||+++|+...-..... ... +..+.+....+....+..+......+...+.+.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~-- 83 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD-- 83 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC--
Confidence 56789999999999999999998532110000 000 000000000111111111111111111111111
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC---CCHHHHHHHHHhhhcC-CeEEEEEeCCCCCC-Ch
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP---LTESEVVFLRYTQQWK-KKVVFVLNKSDLYQ-NA 507 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~---~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~-~~ 507 (921)
-..+.||||||.. .+...+...+..+|++++|+|++++ ........+..+...+ .|+++|+||+|+.. ++
T Consensus 84 -~~~i~iiDtpGh~----~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 -KYEVTIVDCPGHR----DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred -CeEEEEEECCCHH----HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 1258999999963 3333455566889999999999877 3222223233333333 57999999999975 33
Q ss_pred HHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchH
Q 002437 508 FELEEAISFVKENTMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l 541 (921)
+..+.+.+.+.+.+... +. ...+++++||+.+.
T Consensus 159 ~~~~~~~~ei~~~~~~~-g~~~~~~~~i~iSA~~g~ 193 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKV-GYNPDTVPFIPISAWNGD 193 (426)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcccceEEEeeccccc
Confidence 34555555555544432 22 34789999999873
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=134.35 Aligned_cols=184 Identities=18% Similarity=0.223 Sum_probs=109.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC---CCCccceeEEEEccCCccc------hhhcccccCCC---eEEe---
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG---VVPTTNEITFLRFSDLASE------EQQRCERHPDG---QYIC--- 427 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~---~~~tT~~~~~~~~~~~~~~------~~~~~~~~~~g---~~~~--- 427 (921)
....|+++|+..+|||||+.+|+|.....-. ....|.. +.|...... ........+.+ ...+
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~---lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIK---LGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchh---ccccccccccCcccCCcccccccCCCcccccccccc
Confidence 4679999999999999999999986432110 0111111 111110000 00000000000 0000
Q ss_pred ecCCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-CCHHHHHHHHHhhhcC-CeEEEEEeCCCCCC
Q 002437 428 YLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-LTESEVVFLRYTQQWK-KKVVFVLNKSDLYQ 505 (921)
Q Consensus 428 ~~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~ 505 (921)
..+..+.+.+.||||||. +.+...+...+..+|++++|+|++.+ ...+..+.+..+...+ +++|+|+||+|+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH----~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGH----DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCH----HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 000111236899999995 34444455566889999999999975 3444445555444444 46899999999984
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 506 NAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 506 ~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+..++..+.+++.+.... ....+++++||+.+ .|++.|.+.|.+.+.
T Consensus 186 -~~~~~~~~~ei~~~l~~~~-~~~~~iipVSA~~G---------------------------~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 186 -EAQAQDQYEEIRNFVKGTI-ADNAPIIPISAQLK---------------------------YNIDVVLEYICTQIP 233 (460)
T ss_pred -HHHHHHHHHHHHHHHHhhc-cCCCeEEEeeCCCC---------------------------CCHHHHHHHHHhhCC
Confidence 3455555566655544432 25689999999987 578888888886554
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-10 Score=116.58 Aligned_cols=222 Identities=21% Similarity=0.170 Sum_probs=132.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhCccHHHH--HHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHH------CCCCCC
Q 002437 320 EDREKQLIETERSVLLEAIDVIKKASPLMEEV--SLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALL------GKRYLK 391 (921)
Q Consensus 320 ~~~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~ 391 (921)
.+-.+.++..+++.+.+++..+++..+.-... ..+........+..+|+|.|.||+|||||+.+|. |.++..
T Consensus 5 ~~l~e~l~~GdrrAlARaITlvEs~~~~h~~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaV 84 (323)
T COG1703 5 DELIERLLAGDRRALARAITLVESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAV 84 (323)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCchhhhHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEE
Confidence 33456778889999999999999876653332 3344555667778899999999999999999986 334433
Q ss_pred CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHH
Q 002437 392 DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQ 452 (921)
Q Consensus 392 ~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~ 452 (921)
..+.|+.... ...-.++...........|.++...|+. ...+++||.|-|++-.
T Consensus 85 lAVDPSSp~T---GGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQs---- 157 (323)
T COG1703 85 LAVDPSSPFT---GGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQS---- 157 (323)
T ss_pred EEECCCCCCC---CccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc----
Confidence 3333332100 0000011111111111223333333311 1357999999998622
Q ss_pred HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH-HHhhCCCCCe
Q 002437 453 QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT-MKLLNIENVT 531 (921)
Q Consensus 453 ~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~ 531 (921)
--....-+|.+++|+-..-+ .+.+.++. .-+..--++|+||+|....+....++...+.... ...-..+.+|
T Consensus 158 ---ev~I~~~aDt~~~v~~pg~G---D~~Q~iK~-GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 158 ---EVDIANMADTFLVVMIPGAG---DDLQGIKA-GIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred ---hhHHhhhcceEEEEecCCCC---cHHHHHHh-hhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 12344668999999876543 23332221 1122345899999996654333333333333221 1112347899
Q ss_pred EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 532 IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 532 v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
|+.+||.++ .|+++|++.+.++..
T Consensus 231 v~~t~A~~g---------------------------~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 231 VVTTSALEG---------------------------EGIDELWDAIEDHRK 254 (323)
T ss_pred eeEeeeccC---------------------------CCHHHHHHHHHHHHH
Confidence 999999887 699999999988755
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-11 Score=129.50 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=86.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|++..-........+...+...+. .....+..........+.+.. ..+++|||||.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~---~~e~~r~~ti~~~~~~~~~~~---~~i~liDtPG~ 74 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYD---PEEIKRKMSISTSVAPLEWKG---HKINLIDTPGY 74 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCC---HHHHhhcccccceeEEEEECC---EEEEEEECcCH
Confidence 489999999999999999986432211111000000111111 111111111111111111111 25899999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
. .+...+..++..+|++++|+|++.+.......+++.+...+.|+++|+||+|.... +.++..+.+++
T Consensus 75 ~----~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~--~~~~~~~~l~~ 142 (268)
T cd04170 75 A----DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA--DFDKTLAALQE 142 (268)
T ss_pred H----HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC--CHHHHHHHHHH
Confidence 4 33345677888999999999999887777777888888888999999999998754 34444444444
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-11 Score=122.87 Aligned_cols=161 Identities=23% Similarity=0.222 Sum_probs=97.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|..|+|||||++.+....+. ....+++......... .++.. ..+.++||||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt~g 58 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCR-------------VDGKP---------VQLALWDTAG 58 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEE-------------ECCEE---------EEEEEEECCC
Confidence 57999999999999999999865542 2333333221111100 01110 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHH------H-
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEE------A- 513 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~------v- 513 (921)
.... ......++..+|++++|+|.++..+..+. .++..+.. ...|+++|.||+|+.......++ +
T Consensus 59 ~~~~----~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~ 134 (187)
T cd04129 59 QEEY----ERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP 134 (187)
T ss_pred Chhc----cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCC
Confidence 7422 22233456899999999999876655554 35565543 25799999999998542110000 0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.... ..+.+.++ ..++|.+||+++ .|++++.+.+.+.+.
T Consensus 135 ~~~~-~~~~~~~~--~~~~~e~Sa~~~---------------------------~~v~~~f~~l~~~~~ 173 (187)
T cd04129 135 IQQG-KRVAKEIG--AKKYMECSALTG---------------------------EGVDDVFEAATRAAL 173 (187)
T ss_pred HHHH-HHHHHHhC--CcEEEEccCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 0011 11112222 247999999987 688888887765443
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=126.08 Aligned_cols=132 Identities=16% Similarity=0.098 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc----ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT----NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+|+++|++|+|||||+|+|+...-......... ...+.. +....+..+..........+.+. -..+.+|
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~---D~~~~e~~rg~si~~~~~~~~~~---~~~i~li 76 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATS---DWMEIEKQRGISVTSSVMQFEYR---DCVINLL 76 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccC---CCcHHHHhCCCCeEEEEEEEeeC---CEEEEEE
Confidence 5799999999999999999986422111100000 000000 11111111111111111111111 1258999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||||.... ...+..+++.+|++|+|+|+..+.......+++.+...+.|+++++||+|+...
T Consensus 77 DTPG~~df----~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 77 DTPGHEDF----SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred ECCCchHH----HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 99997433 333566778999999999998877666666777777778999999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=107.96 Aligned_cols=142 Identities=21% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|.++|..||||||+++.|.+.+. ....||-. .+..+.+.. ..+.++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~--~~i~pt~gf~Iktl~~~~--------------------------~~L~iw 65 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT--DTISPTLGFQIKTLEYKG--------------------------YTLNIW 65 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc--cccCCccceeeEEEEecc--------------------------eEEEEE
Confidence 3479999999999999999999999873 33333322 122222211 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCC--hHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQN--AFELEEA 513 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~--~~~~~~v 513 (921)
|..|. ....+.+.+|+..+|++|||+|.+.+...++- ..|..+ +-.+.|++++.||.|+.+. .+++..+
T Consensus 66 DvGGq----~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~ 141 (185)
T KOG0073|consen 66 DVGGQ----KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKA 141 (185)
T ss_pred EcCCc----chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHh
Confidence 99997 45677899999999999999999866543332 233322 3356899999999999844 2222222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ++.++......+++.+|+.+|
T Consensus 142 ~-----~L~~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 142 L-----DLEELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred h-----CHHHhccccCceEEEEecccc
Confidence 1 233444556789999999987
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=127.03 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=101.1
Q ss_pred HHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC----------------CCCCCC---ccceeEEEEccCCccchhhcc
Q 002437 357 AVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL----------------KDGVVP---TTNEITFLRFSDLASEEQQRC 417 (921)
Q Consensus 357 ~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~----------------~~~~~~---tT~~~~~~~~~~~~~~~~~~~ 417 (921)
...+......|+|+|+.++|||||||++.+.-++ |++... ||.++.++.-.
T Consensus 10 Ia~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~k---------- 79 (492)
T TIGR02836 10 IAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNE---------- 79 (492)
T ss_pred HHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCc----------
Confidence 3446677899999999999999999999998333 333333 44444332111
Q ss_pred cccCCCeEEeecCCCcccccEEEeCCCCChh---hhHHHHH----------------------HHHhcC-CCCEEEEEE-
Q 002437 418 ERHPDGQYICYLPSPILKEMIIVDTPGTNVI---LQRQQRL----------------------TEEFVP-RADLVLFVI- 470 (921)
Q Consensus 418 ~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---~~~~~~~----------------------~~~~l~-~aD~il~V~- 470 (921)
-+........--.+.+|||+|+... ......- +++.+. ++|+.|+|+
T Consensus 80 ------AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtT 153 (492)
T TIGR02836 80 ------AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTT 153 (492)
T ss_pred ------ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEc
Confidence 0111100001125899999998422 1111111 677776 999999998
Q ss_pred eCC------CCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 471 SAD------RPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 471 da~------~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
|.+ ......+.+++..+++.++|+++|+||.|-..++ -.+.. +.+.+.+ +.+++++|+.+
T Consensus 154 Dgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~e--t~~l~----~~l~eky---~vpvl~v~c~~ 219 (492)
T TIGR02836 154 DGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPE--TEALR----QELEEKY---DVPVLAMDVES 219 (492)
T ss_pred CCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCch--hHHHH----HHHHHHh---CCceEEEEHHH
Confidence 764 4567888899999999999999999999954331 12222 2222333 37889999854
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-11 Score=143.96 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=104.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+++|++|+|||||+|+|+...-............+ +.+....+..+..........+.+.. ..++||||
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~---~~D~~~~E~~rg~ti~~~~~~~~~~~---~~~~liDT 82 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAA---TMDWMEQEQERGITITSAATTCFWKD---HRINIIDT 82 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcc---cCCCCHHHHhCCCCEeccEEEEEECC---eEEEEEeC
Confidence 4579999999999999999999742111000000000000 11111111222222222222222221 35999999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||..... .-+...+..+|++|+|+|+..+.+.++..++..+...+.|+++++||||+... +...+.+.+++.+.
T Consensus 83 PG~~~f~----~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~--~~~~~~~~i~~~l~ 156 (693)
T PRK00007 83 PGHVDFT----IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA--DFYRVVEQIKDRLG 156 (693)
T ss_pred CCcHHHH----HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHhC
Confidence 9974322 23666778899999999999998889999999999999999999999999854 34555666655543
Q ss_pred HhhCCCCCeEEEecccchH
Q 002437 523 KLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 523 ~~~~~~~~~v~~vSA~~~l 541 (921)
.. ....++|+|+..++
T Consensus 157 ~~---~~~~~ipisa~~~f 172 (693)
T PRK00007 157 AN---PVPIQLPIGAEDDF 172 (693)
T ss_pred CC---eeeEEecCccCCcc
Confidence 32 23567899987764
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=134.42 Aligned_cols=169 Identities=20% Similarity=0.145 Sum_probs=102.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--C----------CCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD--G----------VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~----------~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
...+|+++|+.++|||||+.+|+...-... + ....+.... ...+...++..+..........+.+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a--~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYA--WVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhh--hhhcCChHHHhcCEeEEeeeEEEccC
Confidence 457899999999999999999985311100 0 000000000 00111111222222211111111111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-------CHHHHHHHHHhhhcCCe-EEEEEeCCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-------TESEVVFLRYTQQWKKK-VVFVLNKSD 502 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-------t~~e~~~l~~l~~~~~~-vivVlNK~D 502 (921)
-..++|+||||.. ++...+...+..+|++++|+|+..+. ..+..+.+..+...+.| +|+++||+|
T Consensus 84 ---~~~i~lIDtPGh~----~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 84 ---KYYFTIIDAPGHR----DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred ---CeEEEEEECCChH----HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 1358999999963 44444566678999999999998765 24556667777777865 779999999
Q ss_pred CCC---ChHHHHHHHHHHHHHHHHhh-CCCCCeEEEecccch
Q 002437 503 LYQ---NAFELEEAISFVKENTMKLL-NIENVTIYPVSARST 540 (921)
Q Consensus 503 ~~~---~~~~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~ 540 (921)
... +++.++++.+.+...+...- .....+++|+|+..+
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g 198 (446)
T PTZ00141 157 DKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQG 198 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccC
Confidence 532 34567777777777766532 124689999999987
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=118.86 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=97.9
Q ss_pred EeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChh
Q 002437 370 VGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVI 448 (921)
Q Consensus 370 vG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~ 448 (921)
+|..++|||||++.++...+. ....||.. .+....+.. ++.. ..+.||||||.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~~~~Tig~~~~~~~~~~-------------~~~~---------~~l~iwDt~G~--- 54 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHT-------------NRGP---------IRFNVWDTAGQ--- 54 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEE-------------CCEE---------EEEEEEECCCc---
Confidence 599999999999999976542 33444432 111111110 1110 14899999997
Q ss_pred hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 449 LQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 449 ~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
+++..++..+++.+|++|+|+|.++..+.... .++..+.. .+.|+++|.||+|+.......+. .. +..
T Consensus 55 -e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~-~~-----~~~-- 125 (200)
T smart00176 55 -EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS-IT-----FHR-- 125 (200)
T ss_pred -hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHH-HH-----HHH--
Confidence 45666778899999999999999987665544 35555654 45799999999998532111111 11 111
Q ss_pred CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 526 NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
....++|.+||+.+ .|+.++..++...+.
T Consensus 126 -~~~~~~~e~SAk~~---------------------------~~v~~~F~~l~~~i~ 154 (200)
T smart00176 126 -KKNLQYYDISAKSN---------------------------YNFEKPFLWLARKLI 154 (200)
T ss_pred -HcCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 12478999999987 577777777766554
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-11 Score=124.51 Aligned_cols=162 Identities=23% Similarity=0.170 Sum_probs=109.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
-|+++|-||+||||||+++...+.-..++.+||-.+......... + +.+++-|.||+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~------------~-----------~sfv~ADIPGL 217 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG------------G-----------ESFVVADIPGL 217 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC------------C-----------CcEEEecCccc
Confidence 488999999999999999999987778899999766543221100 0 35899999998
Q ss_pred Chhhh---HHHHHHHHhcCCCCEEEEEEeCCCCCC---HHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 446 NVILQ---RQQRLTEEFVPRADLVLFVISADRPLT---ESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 446 ~~~~~---~~~~~~~~~l~~aD~il~V~da~~~~t---~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
-.... -..-.-.+.+.++-++++|+|.+.... .++.. +..++.. ..+|.++|+||+|+..++++++..
T Consensus 218 IEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~ 297 (369)
T COG0536 218 IEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEEL 297 (369)
T ss_pred ccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHH
Confidence 42211 111224556788999999999874331 23333 3344443 458999999999987776666666
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.+.+. .+ +...++ ||+.+. .|++.|...+.+++..
T Consensus 298 ~~~l~~~----~~-~~~~~~-ISa~t~---------------------------~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 298 KKALAEA----LG-WEVFYL-ISALTR---------------------------EGLDELLRALAELLEE 334 (369)
T ss_pred HHHHHHh----cC-CCccee-eehhcc---------------------------cCHHHHHHHHHHHHHH
Confidence 5555432 12 122233 999875 6888888888877763
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=114.43 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=85.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|..|+|||||++.++...+.+. ..|+..... ... ..+|.. ..+.++||+|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~~-~~i-------------~~~~~~---------~~l~i~D~~g 56 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRFK-KEV-------------LVDGQS---------HLLLIRDEGG 56 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccceE-EEE-------------EECCEE---------EEEEEEECCC
Confidence 3699999999999999999887665432 223221110 000 011211 1378999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
... ..+...+|++++|+|.++..+.++. .++..+.. ...|+++|.||.|+..... ..+......
T Consensus 57 ~~~---------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~--~~v~~~~~~ 125 (158)
T cd04103 57 APD---------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP--RVIDDARAR 125 (158)
T ss_pred CCc---------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC--cccCHHHHH
Confidence 731 2456789999999999988777763 46666653 2469999999999742110 111111111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.. ....++.+||+++
T Consensus 126 ~~~~~~--~~~~~~e~SAk~~ 144 (158)
T cd04103 126 QLCADM--KRCSYYETCATYG 144 (158)
T ss_pred HHHHHh--CCCcEEEEecCCC
Confidence 122111 2368999999987
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-10 Score=116.15 Aligned_cols=124 Identities=25% Similarity=0.239 Sum_probs=76.1
Q ss_pred CeEEEEEeCCCCCHHHHHH-HHHCCCC----CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 364 PFLLVIVGEYNSGKSSVIN-ALLGKRY----LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiN-aLlg~~~----~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
.++|+++|..|+|||||++ .+.+..+ .+....||......+.... . ...+.....+|.. -.+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~-~--~~~~~~~~~~~~~---------v~l~ 69 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQ-E--VLERSRDVVDGVS---------VSLR 69 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEe-e--eccccceeeCCEE---------EEEE
Confidence 4789999999999999996 5544432 2334445542101000000 0 0000000112221 1489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCC
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~ 505 (921)
||||+|... .....+++.+|++|+|+|.+++.+..+.. ++..+.. ...|+++|.||+|+..
T Consensus 70 iwDTaG~~~------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 70 LWDTFGDHD------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEeCCCChh------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 999999732 23445789999999999999887766652 5566654 3579999999999863
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.9e-11 Score=142.92 Aligned_cols=165 Identities=14% Similarity=0.119 Sum_probs=102.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
++..+|+|+|++|+|||||+|+|+...-.......+....+. .+....+..+..........+.+.. ..+++||
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~---~D~~~~e~~rgiti~~~~~~~~~~~---~~i~liD 81 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAAT---MDWMEQEKERGITITSAATTVFWKG---HRINIID 81 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccc---cCCCHHHHhcCCCEecceEEEEECC---eEEEEEE
Confidence 355799999999999999999998532211110000000000 0111111112222111111222211 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||..... ..+..++..+|++|+|+|+..+....+..++..+...+.|+++|+||+|+... +...+.+.+...+
T Consensus 82 TPG~~~~~----~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~--~~~~~~~~i~~~l 155 (689)
T TIGR00484 82 TPGHVDFT----VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA--NFLRVVNQIKQRL 155 (689)
T ss_pred CCCCcchh----HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHh
Confidence 99985432 24667788999999999999888888888888888888999999999999854 2445555555443
Q ss_pred HHhhCCCCCeEEEecccchH
Q 002437 522 MKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l 541 (921)
.. .....++|+|+..++
T Consensus 156 ~~---~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 156 GA---NAVPIQLPIGAEDNF 172 (689)
T ss_pred CC---CceeEEeccccCCCc
Confidence 21 123458899987764
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=120.05 Aligned_cols=200 Identities=22% Similarity=0.221 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHH------CCCCCCCCCCCccceeEEEEcc
Q 002437 334 LLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALL------GKRYLKDGVVPTTNEITFLRFS 407 (921)
Q Consensus 334 l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~~~~~~tT~~~~~~~~~ 407 (921)
+.+.++.+++..+...+ .+........+.++|+|.|+||+|||||+++|. |.++....+.|+... + ...
T Consensus 1 LAraITlvE~~~~~~~~--ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~-t--GGA 75 (266)
T PF03308_consen 1 LARAITLVENRRPEARE--LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF-T--GGA 75 (266)
T ss_dssp HHHHHHHHH-SSHHHHH--HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC-C-----
T ss_pred CHHHHHHHhCCCHHHHH--HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC-C--CCc
Confidence 34667777776553222 233333455678999999999999999999986 444443344443321 0 000
Q ss_pred CCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEE
Q 002437 408 DLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLF 468 (921)
Q Consensus 408 ~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~ 468 (921)
-.++...........+.++...++. ...+++||.|.|++-. -.+...-+|.+++
T Consensus 76 lLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs-------E~~I~~~aD~~v~ 148 (266)
T PF03308_consen 76 LLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS-------EVDIADMADTVVL 148 (266)
T ss_dssp SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH-------HHHHHTTSSEEEE
T ss_pred ccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc-------HHHHHHhcCeEEE
Confidence 0111111111222344454433311 1257999999998621 2234567999999
Q ss_pred EEeCCCCCCHH-HHH-HHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh---hCCCCCeEEEecccchHHh
Q 002437 469 VISADRPLTES-EVV-FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL---LNIENVTIYPVSARSTLEA 543 (921)
Q Consensus 469 V~da~~~~t~~-e~~-~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~v~~vSA~~~l~a 543 (921)
|+....+..-+ .+. +++ ..-++|+||+|.... +.....++..+.-. ...+.+||+.+||.++
T Consensus 149 v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD~~gA----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~--- 215 (266)
T PF03308_consen 149 VLVPGLGDEIQAIKAGIME------IADIFVVNKADRPGA----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEG--- 215 (266)
T ss_dssp EEESSTCCCCCTB-TTHHH------H-SEEEEE--SHHHH----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTT---
T ss_pred EecCCCccHHHHHhhhhhh------hccEEEEeCCChHHH----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCC---
Confidence 99876443211 111 111 245899999995433 22233333222211 1235689999999876
Q ss_pred hcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 544 KLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.|+++|.+.|.++..
T Consensus 216 ------------------------~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 216 ------------------------EGIDELWEAIDEHRD 230 (266)
T ss_dssp ------------------------BSHHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHH
Confidence 799999998887644
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-10 Score=109.76 Aligned_cols=143 Identities=18% Similarity=0.250 Sum_probs=96.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|..++||||||+.+.-+.+. ..+.+|-. ++..-.+ ...+.. -.+.||||
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~------------~l~d~~----------vrLQlWDT 78 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTM------------YLEDRT----------VRLQLWDT 78 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEE------------EEcCcE----------EEEEEEec
Confidence 489999999999999999999877654 22333322 1110000 000111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-cC---CeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-WK---KKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-~~---~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.|+ +++..++..|+++++++|+|+|..+..+..+. .|++.+.. .+ .-+++|.||.|+... .++...-
T Consensus 79 AGQ----ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk----rqvs~eE 150 (221)
T KOG0094|consen 79 AGQ----ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK----RQVSIEE 150 (221)
T ss_pred ccH----HHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch----hhhhHHH
Confidence 997 78899999999999999999999987766654 57777654 22 457789999999965 1221111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.....+ +..+..+||+.|
T Consensus 151 g~~kAkel---~a~f~etsak~g 170 (221)
T KOG0094|consen 151 GERKAKEL---NAEFIETSAKAG 170 (221)
T ss_pred HHHHHHHh---CcEEEEecccCC
Confidence 12222222 357888999988
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=142.21 Aligned_cols=166 Identities=15% Similarity=0.166 Sum_probs=104.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+...+|+|+|+.++|||||+|+|+...-............+ +.+....+..+..........+.+.. ..+++||
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~---~~D~~~~E~~rgiti~~~~~~~~~~~---~~i~liD 79 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAA---TMDWMEQEQERGITITSAATTCFWKG---HRINIID 79 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCcc---ccCCChhHhhcCCCccceeEEEEECC---EEEEEEc
Confidence 35678999999999999999999853211100000000000 11111111222222222222222211 3589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||+.. +...+...+..+|++|+|+|+..+...++..++..+...+.|+|+++||+|+... +...+.+.+++.+
T Consensus 80 TPG~~~----f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~--~~~~~~~~i~~~l 153 (691)
T PRK12739 80 TPGHVD----FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA--DFFRSVEQIKDRL 153 (691)
T ss_pred CCCHHH----HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHHh
Confidence 999743 2234777888999999999999988888888999998889999999999999854 3455555555544
Q ss_pred HHhhCCCCCeEEEecccchHH
Q 002437 522 MKLLNIENVTIYPVSARSTLE 542 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l~ 542 (921)
... ....++|+|+..++.
T Consensus 154 ~~~---~~~~~iPis~~~~f~ 171 (691)
T PRK12739 154 GAN---AVPIQLPIGAEDDFK 171 (691)
T ss_pred CCC---ceeEEecccccccce
Confidence 321 224577889877654
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=112.85 Aligned_cols=144 Identities=22% Similarity=0.354 Sum_probs=98.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|..|+|||||+-.+...++.+. ..||+...-...-- ...+.. -.+.||||
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TIGaaF~tktv-----------~~~~~~----------ikfeIWDT 61 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTIGAAFLTKTV-----------TVDDNT----------IKFEIWDT 61 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccc-cccccccEEEEEEE-----------EeCCcE----------EEEEEEEc
Confidence 358999999999999999999988776532 33444321111000 000111 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCe-EE--EEEeCCCCCCC-hHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWKKK-VV--FVLNKSDLYQN-AFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~-vi--vVlNK~D~~~~-~~~~~~v~~~~ 517 (921)
.|. +++..+..-|++.|+++|+|+|.++..+.... .+++.|.+...| ++ +|.||+|+... .-+.+++..+.
T Consensus 62 AGQ----ERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yA 137 (200)
T KOG0092|consen 62 AGQ----ERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYA 137 (200)
T ss_pred CCc----ccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHH
Confidence 997 56778888999999999999999987666554 477888765544 44 59999999863 22334443332
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ....+|.+||+++
T Consensus 138 e~--------~gll~~ETSAKTg 152 (200)
T KOG0092|consen 138 ES--------QGLLFFETSAKTG 152 (200)
T ss_pred Hh--------cCCEEEEEecccc
Confidence 22 4578999999998
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-11 Score=124.75 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=108.8
Q ss_pred chHHHHHHHHhcCCcEE--EEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIV--VLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~v--qlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.+...++++++.|++.| |+|.+..+..+..+.+.++.++|++ +.++|+++++ +|+|+++.
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--------~g~~~~~~--------- 139 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--------RGPAVKNE--------- 139 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--------cCCcccCc---------
Confidence 55567999999999877 9999998888899999999999999 9999998776 49999771
Q ss_pred hcccCCCCccccCeEEEecCCHHH-HHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCc-------c
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDA-AFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPL-------V 247 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e-~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~-------~ 247 (921)
+ ++|..+. ++.| .+.|||||.+++.+ +++ .+++++.+++||+++||++. +
T Consensus 140 -~---------------~~~~i~~~~~~a-~~~GaD~Ik~~~~~----~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~ 198 (235)
T cd00958 140 -K---------------DPDLIAYAARIG-AELGADIVKTKYTG----DAESFKEVVEGCPVPVVIAGGPKKDSEEEFLK 198 (235)
T ss_pred -c---------------CHHHHHHHHHHH-HHHCCCEEEecCCC----CHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHH
Confidence 0 2345554 5556 68899999996432 455 57888889999999999965 5
Q ss_pred ChHHHHHcCCcEEEEeecccccch
Q 002437 248 DVSKFLKSGASGFVISLEDLSLFN 271 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~~~~ 271 (921)
++.++.++||+||++.++.+..-.
T Consensus 199 ~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 199 MVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHHHHHHcCCcEEEechhhhcCCC
Confidence 589999999999999888876543
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=121.64 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=116.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCCHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
++.+..+....+|++.+++=+-+..-..-.+..+.+++.+ +.++++-+ .++.+.+.|||||||+..+++...
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~ 109 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQ 109 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHH
Confidence 6778888888999999987432111111123444444444 34555433 688899999999999999998766
Q ss_pred HHHhcccCCCCccccCeEEE----ecCCHHHHHcccccCCCCEEEeCCC--CCCCCCcc-hhhhhhc--CCCCEEEEcCC
Q 002437 174 ARNTMKDSMSESVVLPLVGR----NVQTLDAAFNASSSEGADFLVCCFG--EGQKADVI-ENSLFTN--VKIPIFIMNAS 244 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~----S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~-~~~~~~~--~~~Pv~aiGGi 244 (921)
.+.+.. .. . .+|. .||+.+++.++ .+.|+||+++++. +...+++. ...+++. .++||+|.|||
T Consensus 110 ~~~~~~---~~-~---~~g~~~~v~v~~~~e~~~~-~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI 181 (217)
T cd00331 110 LKELYE---LA-R---ELGMEVLVEVHDEEELERA-LALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGI 181 (217)
T ss_pred HHHHHH---HH-H---HcCCeEEEEECCHHHHHHH-HHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCC
Confidence 666642 11 1 2344 47999999999 8999999999987 33344554 4667666 46899999999
Q ss_pred C-ccChHHHHHcCCcEEEEeecccccc
Q 002437 245 P-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 245 ~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
+ ++|+.++.++||+||++.+|.++.-
T Consensus 182 ~s~edi~~~~~~Ga~gvivGsai~~~~ 208 (217)
T cd00331 182 STPEDVKRLAEAGADAVLIGESLMRAP 208 (217)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 6 5999999999999999999987753
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-11 Score=127.95 Aligned_cols=131 Identities=12% Similarity=0.193 Sum_probs=101.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCC--CHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEA--SGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~--~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.+...++.+++.|++.||+|.|.. +..++.+.+.++.++|++ |++|++. ..++|+|+++.+
T Consensus 91 ~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~--------~~~~Gvh~~~~~-------- 154 (258)
T TIGR01949 91 RIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAM--------MYPRGPHIDDRD-------- 154 (258)
T ss_pred eeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE--------EeccCccccccc--------
Confidence 355779999999999999999944 456788899999999998 9999982 227899997621
Q ss_pred hcccCCCCccccCeEEEecCCHHH-HHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCC-------cc
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDA-AFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASP-------LV 247 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e-~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~-------~~ 247 (921)
++...+ ++.| .+.|||||.++- + .|+. .+.+++..++||+|+|||+ .+
T Consensus 155 ------------------~~~~~~~~~~a-~~~GADyikt~~--~--~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~ 211 (258)
T TIGR01949 155 ------------------PELVAHAARLG-AELGADIVKTPY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQ 211 (258)
T ss_pred ------------------HHHHHHHHHHH-HHHCCCEEeccC--C--CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHH
Confidence 112223 3455 578999999862 2 3454 5778888899999999998 66
Q ss_pred ChHHHHHcCCcEEEEeeccccc
Q 002437 248 DVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++.+++++||.|++++++.++.
T Consensus 212 ~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 212 MIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHHcCCcEEehhhHhhcC
Confidence 8999999999999888887765
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-10 Score=116.32 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+.|+++|.+++|||||++.|.+.++..+ ..+++.....+..... ..+ ..+.||||||
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~~~~~~~~~~~~-----------~~~-----------~~~~l~D~pG 57 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILNSE-----------GKG-----------KKFRLVDVPG 57 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEeecceEEEeecC-----------CCC-----------ceEEEEECCC
Confidence 4689999999999999999998765332 1112111111111000 000 2489999999
Q ss_pred CChhhhHHHHHHHHhcCCC-CEEEEEEeCCCCC-CHHH-HHHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRA-DLVLFVISADRPL-TESE-VVFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~a-D~il~V~da~~~~-t~~e-~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.. +.......++..+ +++|||+|+.... +..+ ..++..+ ...+.|+++|+||+|+... ...+.+++
T Consensus 58 ~~----~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a-~~~~~i~~ 132 (203)
T cd04105 58 HP----KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA-KPAKKIKE 132 (203)
T ss_pred CH----HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc-CCHHHHHH
Confidence 74 3445567778888 9999999998752 1111 2233222 1246899999999998754 22234444
Q ss_pred HHHHHH
Q 002437 516 FVKENT 521 (921)
Q Consensus 516 ~~~~~~ 521 (921)
.+...+
T Consensus 133 ~le~ei 138 (203)
T cd04105 133 QLEKEL 138 (203)
T ss_pred HHHHHH
Confidence 444433
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.2e-10 Score=111.96 Aligned_cols=140 Identities=29% Similarity=0.409 Sum_probs=90.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+|+|..++|||||++.+.+..+. ....||.. +........ ++.. -.+.++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~D~~g 57 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSI-------------DGKP---------VNLEIWDTSG 57 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEE-------------TTEE---------EEEEEEEETT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-cccccccccccccccccc-------------cccc---------cccccccccc
Confidence 6899999999999999999987653 34445441 211111111 0110 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh---cCCeEEEEEeCCCCCCC-hHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ---WKKKVVFVLNKSDLYQN-AFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~---~~~~vivVlNK~D~~~~-~~~~~~v~~~~~~ 519 (921)
.. .+......++..+|++|+|+|.+++.+..... ++..+.. ...|+++|.||.|+... .-..++..+..++
T Consensus 58 ~~----~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~ 133 (162)
T PF00071_consen 58 QE----RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKE 133 (162)
T ss_dssp SG----GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHH
T ss_pred cc----cccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHH
Confidence 63 34455667789999999999998765544443 4455443 34799999999998752 1112222222221
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+++.+||+.+
T Consensus 134 --------~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 134 --------LGVPYFEVSAKNG 146 (162)
T ss_dssp --------TTSEEEEEBTTTT
T ss_pred --------hCCEEEEEECCCC
Confidence 2378999999886
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-08 Score=108.58 Aligned_cols=148 Identities=20% Similarity=0.361 Sum_probs=97.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC----CCCCc--cceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD----GVVPT--TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~----~~~~t--T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
.-.|+|+++|+.|.|||||||.|++..+... +..+. ...+....+.. ....+|.- -
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~---------~l~e~~~~---------~ 82 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKA---------ELEEDGFH---------L 82 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeee---------eeecCCeE---------E
Confidence 5679999999999999999999999844322 11111 11111111111 11122221 1
Q ss_pred ccEEEeCCCCChhhhH---H-------HHHHHHhc--------------CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhc
Q 002437 436 EMIIVDTPGTNVILQR---Q-------QRLTEEFV--------------PRADLVLFVISAD-RPLTESEVVFLRYTQQW 490 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~---~-------~~~~~~~l--------------~~aD~il~V~da~-~~~t~~e~~~l~~l~~~ 490 (921)
+++++||||+++.... + ......|+ .+.|++||.+... +.+..-+.++++.+.+.
T Consensus 83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~ 162 (373)
T COG5019 83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR 162 (373)
T ss_pred EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc
Confidence 5899999999753111 0 11122222 3578999999754 67899999999998864
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIY 533 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~ 533 (921)
.++|.|+.|+|.. +.+++...++.+++.+... ..+||
T Consensus 163 -vNlIPVI~KaD~l-T~~El~~~K~~I~~~i~~~----nI~vf 199 (373)
T COG5019 163 -VNLIPVIAKADTL-TDDELAEFKERIREDLEQY----NIPVF 199 (373)
T ss_pred -cCeeeeeeccccC-CHHHHHHHHHHHHHHHHHh----CCcee
Confidence 7999999999999 5578888888888877653 45555
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=111.25 Aligned_cols=117 Identities=13% Similarity=0.157 Sum_probs=81.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.+|+++|..++|||||++.+.+..+.. ...||... + ..+.+... .+++.. -.+.|||
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~-~~~~Tig~~~~~k~~~~~~~----------~~~~~~---------~~l~IwD 60 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG-RPSWTVGCSVDVKHHTYKEG----------TPEEKT---------FFVELWD 60 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcceeeeEEEEEEEEcCC----------CCCCcE---------EEEEEEe
Confidence 379999999999999999999887643 33444432 1 11111110 011111 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----------------------cCCeEEEEE
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----------------------WKKKVVFVL 498 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----------------------~~~~vivVl 498 (921)
|+|. +++..+...+++.+|++|+|+|.+++.+..... |+..+.. ...|+++|.
T Consensus 61 taG~----e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVG 136 (202)
T cd04102 61 VGGS----ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIG 136 (202)
T ss_pred cCCc----hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEE
Confidence 9997 456677888999999999999999887776664 5555532 246999999
Q ss_pred eCCCCCC
Q 002437 499 NKSDLYQ 505 (921)
Q Consensus 499 NK~D~~~ 505 (921)
||+|+..
T Consensus 137 nK~Dl~~ 143 (202)
T cd04102 137 TKLDQIP 143 (202)
T ss_pred ECccchh
Confidence 9999864
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.4e-10 Score=121.25 Aligned_cols=103 Identities=18% Similarity=0.101 Sum_probs=60.7
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCC---cc-chhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDL---AS-EEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~---~~-~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
|+++|.+|+|||||+|+|++......+..+||..++....... +. .....+ ....|.. ....-.-.+.++||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~-~~~~~~~---~~~~~~v~i~l~D~ 76 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSC-NPRYGKC---IDGKRYVPVELIDV 76 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhh-ccccccc---ccCcCcceEEEEEC
Confidence 5799999999999999999988766677777766654322110 00 000000 0000000 00000014899999
Q ss_pred CCCChhhhHHH---HHHHHhcCCCCEEEEEEeCC
Q 002437 443 PGTNVILQRQQ---RLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 443 PG~~~~~~~~~---~~~~~~l~~aD~il~V~da~ 473 (921)
||+.....+.. ......++.||++++|+|+.
T Consensus 77 aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 77 AGLVPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 99842222222 33445689999999999996
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.1e-10 Score=107.23 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=100.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC----------CCccceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV----------VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~----------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
...+|+|+|..++||||++.++.......+.. .+||.... .|.+..+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D-------------------~g~~~~~~~-- 67 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMD-------------------FGSIELDED-- 67 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeec-------------------ccceEEcCc--
Confidence 35799999999999999999998876422111 11222111 111111111
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHH
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~ 511 (921)
..+.|+||||. +++.-++.-+++.++..|+++|++.+.+..+..++..+.... .|+++.+||.|+.... -.+
T Consensus 68 --~~v~LfgtPGq----~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~-ppe 140 (187)
T COG2229 68 --TGVHLFGTPGQ----ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL-PPE 140 (187)
T ss_pred --ceEEEecCCCc----HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC-CHH
Confidence 25899999997 678888889999999999999999999887777777776655 8999999999997642 123
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.+.+...+ ...+++.++|.++
T Consensus 141 ~i~e~l~~~~------~~~~vi~~~a~e~ 163 (187)
T COG2229 141 KIREALKLEL------LSVPVIEIDATEG 163 (187)
T ss_pred HHHHHHHhcc------CCCceeeeecccc
Confidence 3333333211 3588999999865
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=110.92 Aligned_cols=145 Identities=18% Similarity=0.301 Sum_probs=98.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..|+|.++|..|+|||-|+-.+.+..+.. ....|-. ++.... ..-+|..+ .+.+|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e-~~~sTIGVDf~~rt-------------~e~~gk~i---------KlQIW 63 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTE-SYISTIGVDFKIRT-------------VELDGKTI---------KLQIW 63 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcch-hhcceeeeEEEEEE-------------eeecceEE---------EEEee
Confidence 457999999999999999999999887642 2221111 111110 11122211 48999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc---CCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW---KKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~---~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||.|. +++..++..|++.|+.||+|+|.+...+.... +|+..+.+. +.|.++|.||+|+.... .+...
T Consensus 64 DTAGQ----ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~----~v~~~ 135 (205)
T KOG0084|consen 64 DTAGQ----ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR----VVSTE 135 (205)
T ss_pred ecccc----HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe----ecCHH
Confidence 99997 78889999999999999999999976666655 477777663 35899999999987541 11111
Q ss_pred HHHHHHHhhCCCCCe-EEEecccch
Q 002437 517 VKENTMKLLNIENVT-IYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~-v~~vSA~~~ 540 (921)
..+.+... .+.+ ++.+||+.+
T Consensus 136 ~a~~fa~~---~~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 136 EAQEFADE---LGIPIFLETSAKDS 157 (205)
T ss_pred HHHHHHHh---cCCcceeecccCCc
Confidence 11222222 3355 999999987
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-10 Score=120.52 Aligned_cols=138 Identities=24% Similarity=0.357 Sum_probs=86.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCC--CCC------ccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDG--VVP------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~--~~~------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
.++|+|+|.+|+|||||||.|++..+.+.. ..+ .|..+...... ...+|.. -
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------l~e~~~~---------l 63 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVE-----------LEENGVK---------L 63 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEE-----------EEETCEE---------E
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEE-----------eccCCcc---------e
Confidence 489999999999999999999998766543 111 11111111110 1112211 1
Q ss_pred ccEEEeCCCCChhhh--------------HHHHHHHHhc---------CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcC
Q 002437 436 EMIIVDTPGTNVILQ--------------RQQRLTEEFV---------PRADLVLFVISAD-RPLTESEVVFLRYTQQWK 491 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~--------------~~~~~~~~~l---------~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~ 491 (921)
.+++|||||+++... ++.....+-. .+.|++||+++.+ +.+...+.++++.|...
T Consensus 64 ~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~- 142 (281)
T PF00735_consen 64 NLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR- 142 (281)
T ss_dssp EEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-
T ss_pred EEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-
Confidence 589999999864211 1111111111 3578999999986 56889999999999875
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 002437 492 KKVVFVLNKSDLYQNAFELEEAISFVKENTMK 523 (921)
Q Consensus 492 ~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~ 523 (921)
.++|.|+.|+|... .+++...+..+.+.+..
T Consensus 143 vNvIPvIaKaD~lt-~~el~~~k~~i~~~l~~ 173 (281)
T PF00735_consen 143 VNVIPVIAKADTLT-PEELQAFKQRIREDLEE 173 (281)
T ss_dssp SEEEEEESTGGGS--HHHHHHHHHHHHHHHHH
T ss_pred ccEEeEEecccccC-HHHHHHHHHHHHHHHHH
Confidence 78999999999995 67888888888887765
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=121.26 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=68.7
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc-ccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI-LKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-l~~l~ 438 (921)
+....++|+++|.||+|||||+|+|++.+....+..+||..+........+......... +-|... ...+.
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~--------~~~~~~~~aqi~ 88 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKH--------FKPKSIVPAQLD 88 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHH--------cCCcccCCCCeE
Confidence 446778999999999999999999999988777788888766654432211110000000 000000 02489
Q ss_pred EEeCCCCChhh---hHHHHHHHHhcCCCCEEEEEEeCC
Q 002437 439 IVDTPGTNVIL---QRQQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 439 lvDTPG~~~~~---~~~~~~~~~~l~~aD~il~V~da~ 473 (921)
++||||+.... ..........++.+|++++|+|+.
T Consensus 89 lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 89 ITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred EEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 99999985221 223334556678999999999984
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-10 Score=108.56 Aligned_cols=109 Identities=21% Similarity=0.312 Sum_probs=66.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCC----CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLK----DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~----~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+|+|+|..|+||||||+.|.+....+ ....+.+............ ..+.++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~d 56 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR------------------------QSLQFWD 56 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE------------------------EEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc------------------------eEEEEEe
Confidence 58999999999999999999887651 1111222111111111000 1278999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HH---HHHhhh--cCCeEEEEEeCCC
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VF---LRYTQQ--WKKKVVFVLNKSD 502 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~---l~~l~~--~~~~vivVlNK~D 502 (921)
++|.... ......++..+|++++|+|.+++.+.... ++ +..+.. ...|+++|.||.|
T Consensus 57 ~~g~~~~----~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 57 FGGQEEF----YSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ESSSHCH----HCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCcccee----cccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9997322 22223337889999999999976655553 23 344433 3489999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-10 Score=104.20 Aligned_cols=143 Identities=21% Similarity=0.342 Sum_probs=93.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+.+.++|-.++|||||+|.+....+. ....|| ..+....++. |.+ .+.++|.|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~-edmipt-vGfnmrk~tk--------------gnv----------tiklwD~g 73 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL-EDMIPT-VGFNMRKVTK--------------GNV----------TIKLWDLG 73 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch-hhhccc-ccceeEEecc--------------Cce----------EEEEEecC
Confidence 478999999999999999988754432 223333 3334443332 221 38899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC----CHHHHH-HHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPL----TESEVV-FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~----t~~e~~-~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|. +.+..++..|++.+|+++||+|+.++. +.+|+. +|..-.-.+.|++++.||.|+...-+.. ++...+
T Consensus 74 Gq----~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~-~li~rm- 147 (186)
T KOG0075|consen 74 GQ----PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI-ALIERM- 147 (186)
T ss_pred CC----ccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH-HHHHHh-
Confidence 97 678889999999999999999998754 233332 2222233678999999999998653221 111111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.. +...++-+|.+|+++.
T Consensus 148 -gL~s-itdREvcC~siScke~ 167 (186)
T KOG0075|consen 148 -GLSS-ITDREVCCFSISCKEK 167 (186)
T ss_pred -Cccc-cccceEEEEEEEEcCC
Confidence 1111 1224677899999874
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=122.92 Aligned_cols=102 Identities=20% Similarity=0.128 Sum_probs=63.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCc---c-chhhccc----ccCCCeEEeecCCCccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLA---S-EEQQRCE----RHPDGQYICYLPSPILK 435 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~---~-~~~~~~~----~~~~g~~~~~~p~~~l~ 435 (921)
+++|+++|.+|+|||||+|+|++.+....++.+||..++........ . .....+. ...++.. .-
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~--------~~ 72 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTR--------FI 72 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcc--------ee
Confidence 36899999999999999999999987666777788666653221100 0 0000000 0011110 01
Q ss_pred ccEEEeCCCCChhhhH---HHHHHHHhcCCCCEEEEEEeCC
Q 002437 436 EMIIVDTPGTNVILQR---QQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~---~~~~~~~~l~~aD~il~V~da~ 473 (921)
.+.++||||+.....+ ........++.+|++++|+|+.
T Consensus 73 ~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 73 PVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4789999998432222 2223444589999999999996
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=107.68 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=100.7
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+..++|+++|.+++|||+++-.+....+.+.- .+|-.+.. .. +. ..-+|.. -.+.+|
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~sTiGIDF---k~-------kt-i~l~g~~---------i~lQiW 66 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--ISTIGIDF---KI-------KT-IELDGKK---------IKLQIW 66 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cceEEEEE---EE-------EE-EEeCCeE---------EEEEEE
Confidence 345789999999999999999999887654221 12211111 00 00 1112221 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc---CCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW---KKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~---~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||.|. +++..++..|++.|+.|++|+|..+.-+.++. .|++.+.++ ..|+++|.||+|+... .++...
T Consensus 67 DtaGQ----erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~V~~e 138 (207)
T KOG0078|consen 67 DTAGQ----ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQVSKE 138 (207)
T ss_pred Ecccc----hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----ccccHH
Confidence 99997 78889999999999999999999876655554 477777654 4689999999998753 222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
-.+.+...+ +.+.+.+||+.+
T Consensus 139 ~ge~lA~e~---G~~F~EtSAk~~ 159 (207)
T KOG0078|consen 139 RGEALAREY---GIKFFETSAKTN 159 (207)
T ss_pred HHHHHHHHh---CCeEEEccccCC
Confidence 223333333 488999999997
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.8e-10 Score=126.75 Aligned_cols=172 Identities=16% Similarity=0.099 Sum_probs=100.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--C---C-----CCccceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD--G---V-----VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~---~-----~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
++.+|+++|+.++|||||+.+|+...-... + . ......+.+..+.+...++.++......+...+.++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~-- 83 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT-- 83 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC--
Confidence 567899999999999999999974321100 0 0 000000000001121222222222221111111111
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCC-------HHHHHHHHHhhhcCC-eEEEEEeCCCCC
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLT-------ESEVVFLRYTQQWKK-KVVFVLNKSDLY 504 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t-------~~e~~~l~~l~~~~~-~vivVlNK~D~~ 504 (921)
-+.++|+||||. +++...+...+..+|++|+|+|+..+.- .+..+.+..+...+. ++|+++||+|+.
T Consensus 84 -~~~i~liDtPGh----~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 -KYYCTVIDAPGH----RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred -CEEEEEEECCCH----HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 135899999996 4455556777899999999999987421 233445555666676 578899999976
Q ss_pred CC---hHHHHHHHHHHHHHHHHhh-CCCCCeEEEecccchH
Q 002437 505 QN---AFELEEAISFVKENTMKLL-NIENVTIYPVSARSTL 541 (921)
Q Consensus 505 ~~---~~~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~l 541 (921)
.. .+.++++.+.+...+...- .....+++|+||..|.
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ 199 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGD 199 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccc
Confidence 21 3445666666666655431 1235789999999873
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-10 Score=122.98 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=81.1
Q ss_pred ceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCC
Q 002437 143 ALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQK 222 (921)
Q Consensus 143 ~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~ 222 (921)
..+|.++|++++ |+.+.++..+|+..+ |+ + .||+||||.+|+.+| .+.|+|||.|+|++.
T Consensus 150 ~ilikdnHi~~~----------G~~~~av~~~r~~~~---~~-~---~Igvev~t~eea~~A-~~~gaDyI~ld~~~~-- 209 (265)
T TIGR00078 150 AVMIKDNHIAAA----------GSIEKAVKRARAAAP---FA-L---KIEVEVESLEEAEEA-AEAGADIIMLDNMKP-- 209 (265)
T ss_pred ceeeeccHHHHh----------CCHHHHHHHHHHhCC---CC-C---eEEEEeCCHHHHHHH-HHcCCCEEEECCCCH--
Confidence 457888887766 445668889999885 55 3 699999999999999 899999999999822
Q ss_pred CCcchhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEEEeeccc
Q 002437 223 ADVIENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 223 ~g~~~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~ 267 (921)
.. .+++.+.. .+|++|+|||+++|+.++.++|+++|++ ++..
T Consensus 210 e~--lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isv-gait 253 (265)
T TIGR00078 210 EE--IKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISS-GALT 253 (265)
T ss_pred HH--HHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEe-CHHH
Confidence 11 23334333 3899999999999999999999999988 4443
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=125.11 Aligned_cols=122 Identities=19% Similarity=0.294 Sum_probs=80.7
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
++...+|+++|.+|+||||++|+|+|.+...++. .+.|.....+.... +| ..+.+
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i-------------dG-----------~~L~V 170 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV-------------QG-----------VKIRV 170 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE-------------CC-----------ceEEE
Confidence 4455789999999999999999999998665543 34444433322111 11 25899
Q ss_pred EeCCCCChhh------hHHHHHHHHhcC--CCCEEEEEEeCCCCC-CHHHHHHHHHhhhc-----CCeEEEEEeCCCCCC
Q 002437 440 VDTPGTNVIL------QRQQRLTEEFVP--RADLVLFVISADRPL-TESEVVFLRYTQQW-----KKKVVFVLNKSDLYQ 505 (921)
Q Consensus 440 vDTPG~~~~~------~~~~~~~~~~l~--~aD~il~V~da~~~~-t~~e~~~l~~l~~~-----~~~vivVlNK~D~~~ 505 (921)
|||||+.+.. ......+..++. .+|+||||...+... ..++...++.+... -..+|||+|++|..+
T Consensus 171 IDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 171 IDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred EECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 9999997532 111222333443 589999999876332 33566677777542 268999999999986
Q ss_pred C
Q 002437 506 N 506 (921)
Q Consensus 506 ~ 506 (921)
+
T Consensus 251 p 251 (763)
T TIGR00993 251 P 251 (763)
T ss_pred C
Confidence 3
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-08 Score=110.98 Aligned_cols=207 Identities=18% Similarity=0.171 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCHHHHHHHHHCC------CCCCCCCCCccceeE
Q 002437 330 ERSVLLEAIDVIKKASPLMEEVSLLIDAV-SQIDEPFLLVIVGEYNSGKSSVINALLGK------RYLKDGVVPTTNEIT 402 (921)
Q Consensus 330 ~~~~l~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~I~vvG~~~aGKSTLiNaLlg~------~~~~~~~~~tT~~~~ 402 (921)
+++.+.+.+..+++..+... .+.+.. ........|+|+|.+|+|||||++.|... ++...+..|.+....
T Consensus 2 ~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~ 78 (300)
T TIGR00750 2 NRRALARAITLVENRHPEAK---QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTG 78 (300)
T ss_pred CHHHHHHHHHHHhCCChHHH---HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcch
Confidence 35677888888887655422 222222 23456789999999999999999998642 222111111110000
Q ss_pred EEEccCCccchhhcccccCCCeEEeecCC-------------------CcccccEEEeCCCCChhhhHHHHHHHHhcCCC
Q 002437 403 FLRFSDLASEEQQRCERHPDGQYICYLPS-------------------PILKEMIIVDTPGTNVILQRQQRLTEEFVPRA 463 (921)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-------------------~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~a 463 (921)
-.-.++. ..........+.++...|. ..-.+++|+||||.+.. ....+..+
T Consensus 79 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~-------e~~i~~~a 148 (300)
T TIGR00750 79 GSILGDR---TRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQS-------EVDIANMA 148 (300)
T ss_pred hhhcccc---hhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchh-------hhHHHHhh
Confidence 0000000 0000000001111111111 01246899999998521 12346678
Q ss_pred CEEEEEEeCCCCCCHHHHHHHH-HhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh---CCCCCeEEEecccc
Q 002437 464 DLVLFVISADRPLTESEVVFLR-YTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL---NIENVTIYPVSARS 539 (921)
Q Consensus 464 D~il~V~da~~~~t~~e~~~l~-~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~v~~vSA~~ 539 (921)
|.++++.... +..+...+. .+ ..+|.++|+||+|+....+ .......+...+..+. ..+.++++++||++
T Consensus 149 D~i~vv~~~~---~~~el~~~~~~l--~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~ 222 (300)
T TIGR00750 149 DTFVVVTIPG---TGDDLQGIKAGL--MEIADIYVVNKADGEGATN-VTIARLMLALALEEIRRREDGWRPPVLTTSAVE 222 (300)
T ss_pred ceEEEEecCC---ccHHHHHHHHHH--hhhccEEEEEcccccchhH-HHHHHHHHHHHHhhccccccCCCCCEEEEEccC
Confidence 9999986543 334433222 22 3578899999999985532 2221111111112111 12335799999988
Q ss_pred hHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 540 TLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 540 ~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+ .|+++|.+.+.++..
T Consensus 223 g---------------------------~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 223 G---------------------------RGIDELWDAIEEHKT 238 (300)
T ss_pred C---------------------------CCHHHHHHHHHHHHH
Confidence 7 789999888877644
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-09 Score=111.31 Aligned_cols=143 Identities=20% Similarity=0.315 Sum_probs=86.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||++.++...+. ....||.. ........ ....+.+ .+.++||
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~~~~t~~-~~~~~~~~----------~~~~~~i----------~i~~~Dt 65 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE-KKYIPTLG-VEVHPLKF----------YTNCGPI----------CFNVWDT 65 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccc-eEEEEEEE----------EECCeEE----------EEEEEEC
Confidence 4579999999999999999866554432 22333322 11111100 0011111 4889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||. .....+...++..+|++++|+|.++..+..+. .++..+.. ...|+++|.||+|+...... .+....
T Consensus 66 ~g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~-~~~~~~--- 137 (215)
T PTZ00132 66 AGQ----EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK-ARQITF--- 137 (215)
T ss_pred CCc----hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC-HHHHHH---
Confidence 996 33445567788899999999999876554443 23444332 34789999999998643111 111111
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ....++.+||+++
T Consensus 138 --~~~---~~~~~~e~Sa~~~ 153 (215)
T PTZ00132 138 --HRK---KNLQYYDISAKSN 153 (215)
T ss_pred --HHH---cCCEEEEEeCCCC
Confidence 111 2367899999887
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.4e-10 Score=129.04 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=93.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC--CCCCCCCCC--ccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK--RYLKDGVVP--TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~--~~~~~~~~~--tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+..+|+|+|.+++|||||+++|+.. .+...+... .+...+...+. ..+.++..........+.+. -..+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~---~~E~~rgisi~~~~~~~~~~---~~~i 82 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWM---EMEKQRGISITTSVMQFPYR---DCLV 82 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCC---HHHHhcCCcEEEEEEEEeeC---CeEE
Confidence 45689999999999999999998632 221111110 00001111111 11111111111110111111 1258
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.++||||.. .+...+..++..+|++|+|+|+..........+++.+...+.|+++++||+|+... +..++.+.+
T Consensus 83 nliDTPG~~----df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~--~~~~ll~~i 156 (527)
T TIGR00503 83 NLLDTPGHE----DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR--DPLELLDEV 156 (527)
T ss_pred EEEECCChh----hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC--CHHHHHHHH
Confidence 999999974 33344666788999999999999877766667777777788999999999998643 233444444
Q ss_pred HHHHHHhhCCCCCeEEEecc
Q 002437 518 KENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA 537 (921)
+..+.. ...+.++|+..
T Consensus 157 ~~~l~~---~~~~~~~PIg~ 173 (527)
T TIGR00503 157 ENELKI---NCAPITWPIGC 173 (527)
T ss_pred HHHhCC---CCccEEEEecC
Confidence 443321 12345677744
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=119.26 Aligned_cols=170 Identities=20% Similarity=0.249 Sum_probs=102.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC--CCC----------CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR--YLK----------DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~--~~~----------~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
...+++|+|+..+|||||+-.|+-+- +.+ ......+-.+..+ -+...++.++......+...+..+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawv--lD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWV--LDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEE--ecCChhHHhcceEEEEEEEEeecC
Confidence 56789999999999999999987431 110 0011122222221 122222333333322222211111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhc-CCeEEEEEeCCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQW-KKKVVFVLNKSD 502 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~-~~~vivVlNK~D 502 (921)
. ..++|+|+||.- .+..-+..-...||+.|+|+|+..+ ...+..+.+-.++-. ...+|+++||+|
T Consensus 84 k---~~~tIiDaPGHr----dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD 156 (428)
T COG5256 84 K---YNFTIIDAPGHR----DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMD 156 (428)
T ss_pred C---ceEEEeeCCchH----HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccc
Confidence 1 258999999953 2222233445789999999999876 333333333333333 367999999999
Q ss_pred CCC-ChHHHHHHHHHHHHHHHHhhCCC--CCeEEEecccchHH
Q 002437 503 LYQ-NAFELEEAISFVKENTMKLLNIE--NVTIYPVSARSTLE 542 (921)
Q Consensus 503 ~~~-~~~~~~~v~~~~~~~~~~~~~~~--~~~v~~vSA~~~l~ 542 (921)
..+ +++..+++...+.. +.+.++.. +++++|||+..|-+
T Consensus 157 ~v~wde~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~N 198 (428)
T COG5256 157 LVSWDEERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDN 198 (428)
T ss_pred ccccCHHHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCc
Confidence 984 45568888888877 55555543 58899999999843
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-10 Score=107.23 Aligned_cols=145 Identities=22% Similarity=0.272 Sum_probs=98.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCC-----CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLK-----DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-----~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
...++|.+.|.+|+|||||+|.+...++.. .|....|.++.+ ++.. ..
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V------------------d~~~---------vt 59 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV------------------DDRS---------VT 59 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE------------------cCeE---------EE
Confidence 356899999999999999999999876532 333344443322 1221 14
Q ss_pred cEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-----HHHHhhhc---CCeEEEEEeCCCCCCChH
Q 002437 437 MIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-----FLRYTQQW---KKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 437 l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-----~l~~l~~~---~~~vivVlNK~D~~~~~~ 508 (921)
+.||||.|. +++..+-..+++.||..++|+|.+.+.+...++ ||.+.... .-|.|++.||+|.....+
T Consensus 60 lQiWDTAGQ----ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~ 135 (210)
T KOG0394|consen 60 LQIWDTAGQ----ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS 135 (210)
T ss_pred EEEEecccH----HHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc
Confidence 899999997 677777888899999999999999876665553 55555433 348999999999976321
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
. ....+..+..+.. ..+.|.|.+||+.+.
T Consensus 136 r-~VS~~~Aq~WC~s---~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 136 R-QVSEKKAQTWCKS---KGNIPYFETSAKEAT 164 (210)
T ss_pred c-eeeHHHHHHHHHh---cCCceeEEecccccc
Confidence 1 1111112222222 246899999999874
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=132.87 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=97.4
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC------
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP------ 432 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~------ 432 (921)
...++..+|+|+|+.++|||||+++|+...-........+ ..+.+....+..+........+.+.+...
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-----VRMTDTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCc-----eeeccCcHHHHHhCCceecceeEEEeecccccccc
Confidence 3445678999999999999999999986542211111100 11222222233333333333333333210
Q ss_pred -------cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 433 -------ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 433 -------~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
-...++||||||..+ +...+...+..+|.+|+|+|+..+........++.+...+.|+++++||+|+..
T Consensus 89 ~~~~~~~~~~~inliDtPGh~d----F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVD----FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
T ss_pred cccccCCCceEEEEECCCCHHH----HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccc
Confidence 012478999999743 333356667899999999999999888888889999899999999999999872
Q ss_pred C-----h----HHHHHHHHHHH
Q 002437 506 N-----A----FELEEAISFVK 518 (921)
Q Consensus 506 ~-----~----~~~~~v~~~~~ 518 (921)
. . .++..+++.++
T Consensus 165 ~~~~~~~~~~~~~~~~vi~~in 186 (843)
T PLN00116 165 LELQVDGEEAYQTFSRVIENAN 186 (843)
T ss_pred hhhcCCHHHHHHHHHHHHHHHH
Confidence 1 1 34555666655
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=127.09 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=88.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC--CCCCCCCCC-cc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK--RYLKDGVVP-TT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~--~~~~~~~~~-tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
...+|+++|+.++|||||+++|+.. .+...+... ++ ...+...+ ...+.++..........+.+. ...++
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~---~~~E~~rgiSi~~~~~~~~~~---~~~in 82 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDW---MEMEKQRGISVTSSVMQFPYR---DCLIN 82 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCC---cHHHHhhCCceeeeeEEEEEC---CEEEE
Confidence 5679999999999999999999732 221111110 00 01010111 111111221111111111111 02489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
+|||||..+ +...+..++..+|++|+|+|+..+.......+++.+...+.|+++++||+|+... +..++.+.++
T Consensus 83 liDTPG~~d----f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a--~~~~~l~~i~ 156 (526)
T PRK00741 83 LLDTPGHED----FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR--EPLELLDEIE 156 (526)
T ss_pred EEECCCchh----hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc--CHHHHHHHHH
Confidence 999999743 3334666778999999999999887777777888887889999999999998754 2334444444
Q ss_pred HH
Q 002437 519 EN 520 (921)
Q Consensus 519 ~~ 520 (921)
+.
T Consensus 157 ~~ 158 (526)
T PRK00741 157 EV 158 (526)
T ss_pred HH
Confidence 33
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=132.28 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=99.9
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC------
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP------ 432 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~------ 432 (921)
...+...+|+|+|+.++|||||+++|+...-........+ + .+.+....+.++........+.+.+...
T Consensus 14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~---~--~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (836)
T PTZ00416 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGD---A--RFTDTRADEQERGITIKSTGISLYYEHDLEDGDD 88 (836)
T ss_pred hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCc---e--eecccchhhHhhcceeeccceEEEeecccccccC
Confidence 3445667999999999999999999997532211111111 0 1112222223333333322222222210
Q ss_pred -cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC----C-C
Q 002437 433 -ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY----Q-N 506 (921)
Q Consensus 433 -~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~----~-~ 506 (921)
--..++|+||||.... ...+...+..+|++|+|+|+..+.......+++.+...+.|+|+++||+|+. . +
T Consensus 89 ~~~~~i~liDtPG~~~f----~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~ 164 (836)
T PTZ00416 89 KQPFLINLIDSPGHVDF----SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLD 164 (836)
T ss_pred CCceEEEEEcCCCHHhH----HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCC
Confidence 0123899999998533 3335677799999999999999888888889999988889999999999997 2 1
Q ss_pred h----HHHHHHHHHHHHHHH
Q 002437 507 A----FELEEAISFVKENTM 522 (921)
Q Consensus 507 ~----~~~~~v~~~~~~~~~ 522 (921)
+ ..+..+++.++..+.
T Consensus 165 ~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 165 PEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 1 345666666666554
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-10 Score=121.26 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=81.3
Q ss_pred ceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCC
Q 002437 143 ALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQK 222 (921)
Q Consensus 143 ~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~ 222 (921)
..+|.++|++++. |+ +.+...+|+..+ ++ + .||+||||.+|+.+| .+.|||||.+||++
T Consensus 154 ~vlikdnHi~~~g-----~i-----~~~v~~~r~~~~---~~-~---~Igvev~s~eea~~A-~~~gaDyI~ld~~~--- 212 (268)
T cd01572 154 AVLIKDNHIAAAG-----SI-----TEAVRRARAAAP---FT-L---KIEVEVETLEQLKEA-LEAGADIIMLDNMS--- 212 (268)
T ss_pred eeeeehHHHHHhC-----CH-----HHHHHHHHHhCC---CC-C---eEEEEECCHHHHHHH-HHcCCCEEEECCcC---
Confidence 4577788876653 33 557889999885 45 3 699999999999999 89999999999983
Q ss_pred CCcc-hhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEEEeecc
Q 002437 223 ADVI-ENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 223 ~g~~-~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
++ ..++.+.. ++|++|+|||+++|+.++.++|++||++++--
T Consensus 213 --~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~ 257 (268)
T cd01572 213 --PEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALT 257 (268)
T ss_pred --HHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeee
Confidence 23 35555544 69999999999999999999999999887643
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=119.74 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=102.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+++|+-+...|||||...|+...-......+.- ++-+.-..+.+|..........+++.+.-..-+++|||
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~------q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDT 132 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQE------QVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDT 132 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchh------hhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecC
Confidence 456899999999999999999985321110000000 00000011111221111111111111111123899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||.-++..+ ..+.+.-||.+|+|+|++++...+....+...-+.+..+|.|+||+|+... +.+.+..++.
T Consensus 133 PGHvDFs~E----VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a--dpe~V~~q~~---- 202 (650)
T KOG0462|consen 133 PGHVDFSGE----VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA--DPERVENQLF---- 202 (650)
T ss_pred CCcccccce----ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC--CHHHHHHHHH----
Confidence 998655433 445567799999999999998888887777777888999999999999764 4455555544
Q ss_pred HhhCCCCCeEEEecccchH
Q 002437 523 KLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 523 ~~~~~~~~~v~~vSA~~~l 541 (921)
+++..+..+++.+||++|+
T Consensus 203 ~lF~~~~~~~i~vSAK~G~ 221 (650)
T KOG0462|consen 203 ELFDIPPAEVIYVSAKTGL 221 (650)
T ss_pred HHhcCCccceEEEEeccCc
Confidence 4556667799999999983
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=115.67 Aligned_cols=120 Identities=28% Similarity=0.394 Sum_probs=76.8
Q ss_pred ccEEEeCCCCChhhh--HHHHHHHHhcCC--CCEEEEEEeCCCCCCHHHHHHHHHhh-----hcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQ--RQQRLTEEFVPR--ADLVLFVISADRPLTESEVVFLRYTQ-----QWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~--~~~~~~~~~l~~--aD~il~V~da~~~~t~~e~~~l~~l~-----~~~~~vivVlNK~D~~~~ 506 (921)
++.++||||...... .......+++.. +++++||+|+....+..+......+. ..+.|+++|+||+|....
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 689999999754321 111222233333 89999999998766666654333322 467899999999999865
Q ss_pred hHHHHHHHHHHHH------H--------------HHHhhC--CCCCeEEEecccchHHhhcccccccccCcccccccCcc
Q 002437 507 AFELEEAISFVKE------N--------------TMKLLN--IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSH 564 (921)
Q Consensus 507 ~~~~~~v~~~~~~------~--------------~~~~~~--~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~ 564 (921)
++.+...+.+.. . +.+.+. ....+++++|++.+
T Consensus 178 -~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~------------------------ 232 (253)
T PRK13768 178 -EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTG------------------------ 232 (253)
T ss_pred -hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCC------------------------
Confidence 333444443331 1 101111 12357899998875
Q ss_pred ccccchHHHHHHHHHhhcc
Q 002437 565 WRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 565 ~~~sg~~~L~~~l~~~l~~ 583 (921)
.|+++|.++|.+++..
T Consensus 233 ---~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 233 ---EGFDELYAAIQEVFCG 248 (253)
T ss_pred ---cCHHHHHHHHHHHcCC
Confidence 7999999999998865
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.7e-09 Score=101.16 Aligned_cols=144 Identities=23% Similarity=0.277 Sum_probs=98.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..+++.++|.+|+|||.|+-.++...+.|... .|-. +.|+... ....+.++ .+.+|||
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiG---vefg~r~-------~~id~k~I----------KlqiwDt 62 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIG---VEFGARM-------VTIDGKQI----------KLQIWDT 62 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc--ceee---eeeceeE-------EEEcCceE----------EEEEEec
Confidence 45899999999999999999999998876433 2221 1222111 11111111 4899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcC---CeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQWK---KKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~---~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
.|. +.+.+++.+|++.|-.+|+|+|.++..+...+. +|..+++.. .-++++.||+|+....+ .-++...+.
T Consensus 63 aGq----e~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA 138 (216)
T KOG0098|consen 63 AGQ----ESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFA 138 (216)
T ss_pred CCc----HHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHH
Confidence 997 677889999999999999999999887777664 777777653 45677889999976521 112222222
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++ .....+.+||+++
T Consensus 139 ~e--------hgLifmETSakt~ 153 (216)
T KOG0098|consen 139 RE--------HGLIFMETSAKTA 153 (216)
T ss_pred HH--------cCceeehhhhhhh
Confidence 21 2456778899887
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-09 Score=97.16 Aligned_cols=141 Identities=25% Similarity=0.333 Sum_probs=96.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+++++|..|+|||||.|+|-|...++...+ .++|.+ =-.|||||-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQ-------Ave~~d----------------------------~~~IDTPGE 47 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ-------AVEFND----------------------------KGDIDTPGE 47 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccc-------eeeccC----------------------------ccccCCchh
Confidence 689999999999999999999987643222 122221 236899996
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
.--.+..-....-...++|++++|-.++++.+.-.-.|+ .-..+|+|-|++|.|+.. +.+++.+.+++.+.
T Consensus 48 y~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~---~~~~k~vIgvVTK~DLae-d~dI~~~~~~L~ea----- 118 (148)
T COG4917 48 YFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFL---DIGVKKVIGVVTKADLAE-DADISLVKRWLREA----- 118 (148)
T ss_pred hhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccc---cccccceEEEEecccccc-hHhHHHHHHHHHHc-----
Confidence 432333333344455899999999999876432211121 223467999999999985 45666666655542
Q ss_pred CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 526 NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 526 ~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
| ..+||.+|+... +|+++|.+++..
T Consensus 119 G--a~~IF~~s~~d~---------------------------~gv~~l~~~L~~ 143 (148)
T COG4917 119 G--AEPIFETSAVDN---------------------------QGVEELVDYLAS 143 (148)
T ss_pred C--CcceEEEeccCc---------------------------ccHHHHHHHHHh
Confidence 3 468999999764 789888888764
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=130.12 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=92.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
...+|+|+|..++|||||+++|+...-............+ +.+....+..+..........+.+. ...+.+|||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~---~~d~~~~e~~r~~ti~~~~~~~~~~---~~~i~liDt 80 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTT---VTDWMPQEQERGITIESAATSCDWD---NHRINLIDT 80 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcc---cCCCCHHHHhcCCCcccceEEEEEC---CEEEEEEEC
Confidence 4579999999999999999999854211100000000000 0000001111111111111222221 135899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
||.. ++...+..++..+|++++|+|+..+........+..+...+.|+++|+||+|+... ++....+.++..+
T Consensus 81 PG~~----df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~--~~~~~~~~i~~~l 153 (687)
T PRK13351 81 PGHI----DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA--DLFKVLEDIEERF 153 (687)
T ss_pred CCcH----HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC--CHHHHHHHHHHHH
Confidence 9974 33445778889999999999999888877778888888888999999999998854 4555555555544
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=99.53 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=94.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce--eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE--ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|.++|+.|+|||||+-.+....+-+. .|+|-. +..-... -+|.- -.+.||
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~--~~~tIGvDFkvk~m~-------------vdg~~---------~KlaiW 65 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDL--HPTTIGVDFKVKVMQ-------------VDGKR---------LKLAIW 65 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCcc--CCceeeeeEEEEEEE-------------EcCce---------EEEEEE
Confidence 458999999999999999999998876543 344322 1111111 11110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcC----CeEEEEEeCCCCCCC-hHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQWK----KKVVFVLNKSDLYQN-AFELEEAI 514 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~----~~vivVlNK~D~~~~-~~~~~~v~ 514 (921)
||.|. +++..++..|++.|-.||+|+|..+..+...++ |++.+.-.. .-.++|.||+|...+ .-+.++-+
T Consensus 66 DTAGq----ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~ 141 (209)
T KOG0080|consen 66 DTAGQ----ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGL 141 (209)
T ss_pred eccch----HhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHH
Confidence 99997 788899999999999999999999877766665 455554322 224679999997532 11123333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.++ ...-++.+||++-
T Consensus 142 kfAr~--------h~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 142 KFARK--------HRCLFIECSAKTR 159 (209)
T ss_pred HHHHh--------hCcEEEEcchhhh
Confidence 33222 3466788899875
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=114.53 Aligned_cols=192 Identities=18% Similarity=0.151 Sum_probs=120.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+|+-+...|||||++.|+...-.-....... -+..+....+.++....-.....+.|.. -.++||||
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~-----ERvMDSnDlEkERGITILaKnTav~~~~---~~INIvDT 75 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA-----ERVMDSNDLEKERGITILAKNTAVNYNG---TRINIVDT 75 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchh-----hhhcCccchhhhcCcEEEeccceeecCC---eEEEEecC
Confidence 456899999999999999999997532100000000 0111111111222211111000011110 24899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||.-++..+ ..+.+.-.|.+++++||..+...+.+-.++..-..+.+.|+|+||+|.... ..+++...+-+.+.
T Consensus 76 PGHADFGGE----VERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~A--rp~~Vvd~vfDLf~ 149 (603)
T COG1217 76 PGHADFGGE----VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDA--RPDEVVDEVFDLFV 149 (603)
T ss_pred CCcCCccch----hhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCC--CHHHHHHHHHHHHH
Confidence 998666544 556677789999999999988888888888888889999999999998754 34555566555554
Q ss_pred HhhCC---CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCC
Q 002437 523 KLLNI---ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSS 585 (921)
Q Consensus 523 ~~~~~---~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~ 585 (921)
++-.. .+.||+.-|++.|.......+. ...+..|.+.|.+.+....
T Consensus 150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~-----------------~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 150 ELGATDEQLDFPIVYASARNGTASLDPEDE-----------------ADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HhCCChhhCCCcEEEeeccCceeccCcccc-----------------ccchhHHHHHHHHhCCCCC
Confidence 44222 3688999999998654422221 2347777777777765443
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=110.28 Aligned_cols=186 Identities=21% Similarity=0.265 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC------CCCC--CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK------DGVV--PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL 434 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~------~~~~--~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l 434 (921)
...+|+++|+...|||||..||.|-.... .+.. --..+...+++.+.... ........+-.+..+..++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~---~~y~~~~~C~~cg~~~~l~ 85 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP---ECYTTEPKCPNCGAETELV 85 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC---cccccCCCCCCCCCCccEE
Confidence 45789999999999999999999853221 0000 00001111111110000 0000000011122223566
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~ 512 (921)
+.+.|||.||.. -.-..+.+-..--|..|+|+.++.+. ..+..+.|-.+.-.+ +++++|-||+|++..+..+ +
T Consensus 86 R~VSfVDaPGHe----~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~Al-E 160 (415)
T COG5257 86 RRVSFVDAPGHE----TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERAL-E 160 (415)
T ss_pred EEEEEeeCCchH----HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHH-H
Confidence 889999999952 11111222224458999999998654 223333344343333 6899999999999663222 2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
-.+++++-++-.. .++.||+|+||... -.++.|.++|.+++...
T Consensus 161 ~y~qIk~FvkGt~-Ae~aPIIPiSA~~~---------------------------~NIDal~e~i~~~IptP 204 (415)
T COG5257 161 NYEQIKEFVKGTV-AENAPIIPISAQHK---------------------------ANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHhcccc-cCCCceeeehhhhc---------------------------cCHHHHHHHHHHhCCCC
Confidence 2223332222211 35789999999775 56888888888887643
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-09 Score=114.37 Aligned_cols=101 Identities=20% Similarity=0.073 Sum_probs=63.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc-cccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL-KEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l-~~l~lvDTP 443 (921)
++|+++|.||+|||||+|+|++.+....+...||..+........+........ .+-|.... ..+.++|||
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~--------~~~p~~~~~a~i~lvD~p 74 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAE--------IVKPKKIVPATIEFVDIA 74 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHH--------hcCCccccCceEEEEECC
Confidence 689999999999999999999998666667778866654332211110000000 00010001 248999999
Q ss_pred CCChhhh---HHHHHHHHhcCCCCEEEEEEeCC
Q 002437 444 GTNVILQ---RQQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 444 G~~~~~~---~~~~~~~~~l~~aD~il~V~da~ 473 (921)
|+..... .........++.+|++++|+|+.
T Consensus 75 GL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 75 GLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 9853222 22234555678999999999984
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.1e-09 Score=112.28 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=82.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce---eEEEEccCCccchhhccccc-CCCeEEeecCCCcccccEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE---ITFLRFSDLASEEQQRCERH-PDGQYICYLPSPILKEMII 439 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~---~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~p~~~l~~l~l 439 (921)
.++|+|+|..++|||||++.+.+..+. ....||... ...+.+...... ..... .++.. -.+.|
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~-~~~~pTIG~d~~ik~I~~~~~~~~---~~~ik~d~~k~---------v~LqI 87 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSI-ARPPQTIGCTVGVKHITYGSPGSS---SNSIKGDSERD---------FFVEL 87 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcc-cccCCceeeeEEEEEEEECCcccc---cccccccCCce---------EEEEE
Confidence 579999999999999999999987653 233444322 112222210000 00000 00110 13899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhc---------------CCeEEEEEeCCCC
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQW---------------KKKVVFVLNKSDL 503 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~---------------~~~vivVlNK~D~ 503 (921)
|||+|. +.+..+...+++.+|++|+|+|.++..+..+.. +++.+... ..|+++|.||+|+
T Consensus 88 WDTAGq----ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 88 WDVSGH----ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred EECCCC----hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 999996 456677888999999999999999876665553 55666542 3689999999999
Q ss_pred CC
Q 002437 504 YQ 505 (921)
Q Consensus 504 ~~ 505 (921)
..
T Consensus 164 ~~ 165 (334)
T PLN00023 164 AP 165 (334)
T ss_pred cc
Confidence 64
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-09 Score=127.91 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=87.1
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-cccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-ILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~l~~l~ 438 (921)
..++..+|+++|+.++|||||+++|+...-....... ...+ +.+....+.++........+.+.|... --..++
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~--g~~~---~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~ 90 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELA--GEQL---ALDFDEEEQARGITIKAANVSMVHEYEGKEYLIN 90 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhc--Ccce---ecCccHHHHHhhhhhhccceEEEEEecCCcEEEE
Confidence 4446678999999999999999999854211111000 0001 112222223333333333222222100 012489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
|+||||..+. ...+...+..+|++|+|+|+..+.......++..+...+.|+|+++||+|+..
T Consensus 91 liDtPG~~df----~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 91 LIDTPGHVDF----GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred EEcCCCccCh----HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 9999998543 34466777899999999999988877777788877777788899999999863
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.2e-09 Score=109.78 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=112.8
Q ss_pred HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHHHHh-hc-CceEEecC-------cHHHHHhCCCCeEEcCCCCCCHH
Q 002437 103 DLIDEAVAKF-VGIVVLNGGEASGKSVYEAACLLKSVV-KD-RALFLIAE-------RVDIAAAVNASGVLLSDQGLPAI 172 (921)
Q Consensus 103 ~~~~~~l~~g-~~~vqlR~k~~~~~~~~~~a~~l~~~~-~~-~~~~ivnd-------~~dla~~~~a~GvHL~~~~l~~~ 172 (921)
+....+.+.| +.++ -....+..++.+.++++++.+ .. ++.+++|+ ..+.+.+.|+||||++.. .+..
T Consensus 17 ~~~~~~~~~G~ig~i--~~~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~-~~~~ 93 (236)
T cd04730 17 ELAAAVSNAGGLGFI--GAGYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG-PPAE 93 (236)
T ss_pred HHHHHHHhCCCcccc--CCCCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC-CCHH
Confidence 3344444454 4555 122346778888899998887 33 67889988 588999999999999876 4444
Q ss_pred HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC-CCCC------CCcc-hhhhhhcCCCCEEEEcCC
Q 002437 173 VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG-EGQK------ADVI-ENSLFTNVKIPIFIMNAS 244 (921)
Q Consensus 173 ~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv-Tk~~------~g~~-~~~~~~~~~~Pv~aiGGi 244 (921)
..+.+.. .+ . .++.++|+.+++..+ .+.|+||+.+.+. +..+ ..+. ..++++..++||++.|||
T Consensus 94 ~~~~~~~---~~-i---~~i~~v~~~~~~~~~-~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI 165 (236)
T cd04730 94 VVERLKA---AG-I---KVIPTVTSVEEARKA-EAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGI 165 (236)
T ss_pred HHHHHHH---cC-C---EEEEeCCCHHHHHHH-HHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCC
Confidence 4444432 22 2 467889999999988 7899999998553 1111 1122 366677779999999999
Q ss_pred Cc-cChHHHHHcCCcEEEEeeccccc
Q 002437 245 PL-VDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 245 ~~-~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. +|+.+++++|++||++.++.+..
T Consensus 166 ~~~~~v~~~l~~GadgV~vgS~l~~~ 191 (236)
T cd04730 166 ADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred CCHHHHHHHHHcCCcEEEEchhhhcC
Confidence 87 99999999999999998887765
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=106.29 Aligned_cols=184 Identities=24% Similarity=0.260 Sum_probs=112.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCC---CCCCCCCccceeEEE-EccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRY---LKDGVVPTTNEITFL-RFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~---~~~~~~~tT~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
-.+++++.|...+|||||-.+|..-.. .-..+..+++.++.- .++.-. .......+.|. --+++
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~---v~~parLpq~e---------~lq~t 73 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMT---VLSPARLPQGE---------QLQFT 73 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeee---cccccccCccc---------cceeE
Confidence 347899999999999999999964321 112223333333321 010000 00000111111 01489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC---hHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN---AFELEEAIS 515 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~---~~~~~~v~~ 515 (921)
+||+||..+.. ..+.....-.|+.++|+|+..+...+..+.|-.-...+++.++|+||+|..+. ...+++...
T Consensus 74 lvDCPGHasLI----RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k 149 (522)
T KOG0461|consen 74 LVDCPGHASLI----RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK 149 (522)
T ss_pred EEeCCCcHHHH----HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH
Confidence 99999964321 22223335679999999998776555555554444567899999999999866 233455555
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccCC
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSS 585 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~ 585 (921)
.++..+...--..+.||++||+..|. +...++++|.+.+++.+....
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~-----------------------~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGY-----------------------FKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCc-----------------------cchhHHHHHHHHHHHhhcCCC
Confidence 55555555433356899999998872 234789999999988776544
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-08 Score=104.83 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=80.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc--eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN--EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
++|+|+|..|+|||||+|+|.+..+.... .+|.. .+........ .. -.+.+|||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~-------------~~----------~~~~~~Dt 61 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY-PPTIGNLDPAKTIEPYR-------------RN----------IKLQLWDT 61 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC-CCceeeeeEEEEEEeCC-------------CE----------EEEEeecC
Confidence 89999999999999999999998765322 23221 1111111100 00 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHH-HHHHHHhhhc---CCeEEEEEeCCCCCCChHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESE-VVFLRYTQQW---KKKVVFVLNKSDLYQNAFE 509 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e-~~~l~~l~~~---~~~vivVlNK~D~~~~~~~ 509 (921)
+|+ ++...++..|...++++++|+|..... .... ..+...+... ..|+++|.||+|+......
T Consensus 62 ~gq----~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 62 AGQ----EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred CCH----HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhH
Confidence 997 566678899999999999999988622 2222 2345555543 4799999999999876433
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-09 Score=96.50 Aligned_cols=144 Identities=20% Similarity=0.259 Sum_probs=95.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee---EEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI---TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+-.+++.++|..++|||||+-..++..+.+.-+...--.+ ++++. +.. -++.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~---------------~kR----------iklQ 73 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS---------------DKR----------IKLQ 73 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeec---------------ccE----------EEEE
Confidence 3468999999999999999999999887652111000000 11111 111 1589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCChH-HHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNAF-ELEEA 513 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~~-~~~~v 513 (921)
++||.|. ++...++..|++.++.+|+++|..+..+....+ +..+++ ..+.|+|+|.||+|+....- ..+..
T Consensus 74 iwDTagq----EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g 149 (193)
T KOG0093|consen 74 IWDTAGQ----ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERG 149 (193)
T ss_pred EEecccc----hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHH
Confidence 9999997 567889999999999999999998765544433 444444 35689999999999864310 01111
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHH
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLE 542 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~ 542 (921)
+ .+.+.+| ...|..||+...+
T Consensus 150 ~-----~l~~~LG---fefFEtSaK~Nin 170 (193)
T KOG0093|consen 150 R-----QLADQLG---FEFFETSAKENIN 170 (193)
T ss_pred H-----HHHHHhC---hHHhhhccccccc
Confidence 1 2223344 5688999987643
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=103.21 Aligned_cols=194 Identities=19% Similarity=0.285 Sum_probs=108.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC---CCCC---CCCCCccceeEE-----EEccCCccchhhcccccCCCeEEeec
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK---RYLK---DGVVPTTNEITF-----LRFSDLASEEQQRCERHPDGQYICYL 429 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~---~~~~---~~~~~tT~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (921)
...+..|.|+|..|+|||||+..|... +..| .+..|......+ ++-...-.+..+.....|+|.+...+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 446789999999999999999988642 2111 222232221111 11111112233455566777654322
Q ss_pred CCCc---------------ccccEEEeCCCCChh---hhHHHHHHHHhc-CCCCEEEEEEeCCCCCCHHH-----HHHHH
Q 002437 430 PSPI---------------LKEMIIVDTPGTNVI---LQRQQRLTEEFV-PRADLVLFVISADRPLTESE-----VVFLR 485 (921)
Q Consensus 430 p~~~---------------l~~l~lvDTPG~~~~---~~~~~~~~~~~l-~~aD~il~V~da~~~~t~~e-----~~~l~ 485 (921)
+... -.+.+||||||.... .....-++..+. .-.-+|+||+|..+.-.... +..-.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 2100 124899999998422 111111233332 23457889999764322222 22233
Q ss_pred HhhhcCCeEEEEEeCCCCCCChH------HHHHHHHHHHH---------------HHHHhhCCCCCeEEEecccchHHhh
Q 002437 486 YTQQWKKKVVFVLNKSDLYQNAF------ELEEAISFVKE---------------NTMKLLNIENVTIYPVSARSTLEAK 544 (921)
Q Consensus 486 ~l~~~~~~vivVlNK~D~~~~~~------~~~~v~~~~~~---------------~~~~~~~~~~~~v~~vSA~~~l~a~ 544 (921)
.+.+.+.|+|+|+||+|....+- +.+...+.+.+ .+.+++ ...+.+.|||.+|
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY--~~lrtv~VSs~tG---- 249 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY--RSLRTVGVSSVTG---- 249 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH--hhCceEEEecccC----
Confidence 45567889999999999987731 12222222221 112222 3578899999888
Q ss_pred cccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 545 LSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.||++|...+.+.+.+
T Consensus 250 -----------------------~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 250 -----------------------EGFDDFFTAVDESVDE 265 (366)
T ss_pred -----------------------CcHHHHHHHHHHHHHH
Confidence 7999988888777653
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-09 Score=127.31 Aligned_cols=138 Identities=19% Similarity=0.135 Sum_probs=83.9
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc-ccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI-LKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-l~~l~ 438 (921)
......+|+++|+.++|||||+++|+...-...... ........+ ...+.++...........++.... -..++
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~--~~~~~~~d~---~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~ 89 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL--AGQQLYLDF---DEQEQERGITINAANVSMVHEYEGNEYLIN 89 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc--CCceeecCC---CHHHHhhcchhhcccceeEEeecCCceEEE
Confidence 344567999999999999999999985321110000 000001111 111111111111111110000001 12589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||||||+.... ..+...+..+|++|+|+|+..+.......++..+...+.|+++|+||+|....
T Consensus 90 liDTPG~~~f~----~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 90 LIDTPGHVDFG----GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLIN 153 (720)
T ss_pred EEeCCCccccH----HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccc
Confidence 99999985432 34677889999999999999887777777787777777888999999998743
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=100.85 Aligned_cols=149 Identities=23% Similarity=0.336 Sum_probs=95.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
-.|.|+|+|.+|.|||||+|.|....+..++.. |.|..+..+.+.. ..+|. . -
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi-----------eE~gV-k--------l 104 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI-----------EEKGV-K--------L 104 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee-----------eecce-E--------E
Confidence 458999999999999999999987655432222 2233332222211 11221 1 1
Q ss_pred ccEEEeCCCCChh--------------hhHHHHHHHHh--------c--CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhc
Q 002437 436 EMIIVDTPGTNVI--------------LQRQQRLTEEF--------V--PRADLVLFVISAD-RPLTESEVVFLRYTQQW 490 (921)
Q Consensus 436 ~l~lvDTPG~~~~--------------~~~~~~~~~~~--------l--~~aD~il~V~da~-~~~t~~e~~~l~~l~~~ 490 (921)
.++++||||+++. .+.+.+..++. + .+.++++|.+... +.+..-+.+|++.+.+.
T Consensus 105 kltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v 184 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV 184 (336)
T ss_pred EEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh
Confidence 5899999999643 12222222222 2 2567899998765 55677888999988764
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
.+++-|+-|+|... -++..+.++.+++++... ...+||-.+
T Consensus 185 -vNvvPVIakaDtlT-leEr~~FkqrI~~el~~~----~i~vYPq~~ 225 (336)
T KOG1547|consen 185 -VNVVPVIAKADTLT-LEERSAFKQRIRKELEKH----GIDVYPQDS 225 (336)
T ss_pred -heeeeeEeeccccc-HHHHHHHHHHHHHHHHhc----Ccccccccc
Confidence 68999999999884 456666777777766543 456666544
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=123.90 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=83.4
Q ss_pred EeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhh
Q 002437 370 VGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVIL 449 (921)
Q Consensus 370 vG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~ 449 (921)
+|++++|||||+|+|+...-............+.. +....+..+..........+.+.. ..+++|||||...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~---d~~~~e~~rgiTi~~~~~~~~~~~---~~i~liDtPG~~~-- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTM---DFMPEERERGISITSAATTCEWKG---HKINLIDTPGHVD-- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccC---CCChHHHhcCCCeeeceEEEEECC---EEEEEEECCCcHH--
Confidence 59999999999999976532211110000000111 111111112111111111111111 2589999999743
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
+...+..++..+|++|+|+|++.+.+......+..+...+.|+++|+||+|.... +..++.+.+++.
T Consensus 73 --~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~l~~~ 139 (668)
T PRK12740 73 --FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA--DFFRVLAQLQEK 139 (668)
T ss_pred --HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC--CHHHHHHHHHHH
Confidence 3344667788999999999999888888778888888888999999999998754 334444444443
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-09 Score=108.87 Aligned_cols=160 Identities=9% Similarity=-0.048 Sum_probs=106.8
Q ss_pred chHHHHHHHHhcCCcEEEEe------CCCCCHHHHHHHHHHHHHHhhcC--ceEEecC---cHHHHHhCCCCe--EEcCC
Q 002437 100 DALDLIDEAVAKFVGIVVLN------GGEASGKSVYEAACLLKSVVKDR--ALFLIAE---RVDIAAAVNASG--VLLSD 166 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR------~k~~~~~~~~~~a~~l~~~~~~~--~~~ivnd---~~dla~~~~a~G--vHL~~ 166 (921)
.+.+.++.+.+.|++.|++= .++.+ .-.+.++++++.+... +-+++++ .++.+.++|+|| +|..+
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~--~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~ 89 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLT--FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEA 89 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcc--cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCC
Confidence 56788888889999999993 23333 2244566666543322 3355655 455777889999 55554
Q ss_pred CCCCHHHHHHh--cccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCCC---Ccc-hhhhhhcC--
Q 002437 167 QGLPAIVARNT--MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQKA---DVI-ENSLFTNV-- 234 (921)
Q Consensus 167 ~~l~~~~~r~~--~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~~---g~~-~~~~~~~~-- 234 (921)
.+.+....+.+ .| .. . .++.++|+..+..++ ...++||+.++|+ |+... ++. ...+++..
T Consensus 90 ~~~~~~~~~~~~~~g---~~-~---~~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~ 161 (210)
T TIGR01163 90 SEHIHRLLQLIKDLG---AK-A---GIVLNPATPLEFLEY-VLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDE 161 (210)
T ss_pred chhHHHHHHHHHHcC---Cc-E---EEEECCCCCHHHHHH-HHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHh
Confidence 44333333333 22 23 1 567889987776666 5678999999887 33221 222 23344332
Q ss_pred ---CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 ---KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 ---~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||++.|||+++|+.++.++|++|+++.++.+..
T Consensus 162 ~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 162 NGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred cCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 37999999999999999999999999999888754
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=92.74 Aligned_cols=142 Identities=22% Similarity=0.275 Sum_probs=96.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce---eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE---ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
-.|+|+++|..|+|||.|+..++..-+ |.|...|... +..++.+ |.- -.+.|
T Consensus 6 flfkivlvgnagvgktclvrrftqglf-ppgqgatigvdfmiktvev~---------------gek---------iklqi 60 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEVN---------------GEK---------IKLQI 60 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCC-CCCCCceeeeeEEEEEEEEC---------------CeE---------EEEEE
Confidence 458999999999999999999886543 4454444321 1111111 110 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|||.|. +++..++..|.+.|+++|+|+|.+...+..-+ +||..+.+ .+.--|+|.||+|+.+. .++-.
T Consensus 61 wdtagq----erfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr----revp~ 132 (213)
T KOG0095|consen 61 WDTAGQ----ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR----REVPQ 132 (213)
T ss_pred eeccch----HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh----hhhhH
Confidence 999997 78889999999999999999999865555443 57777754 33446789999998643 34444
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.+.+.+. .+.-+...||+.+
T Consensus 133 qigeefs~~---qdmyfletsakea 154 (213)
T KOG0095|consen 133 QIGEEFSEA---QDMYFLETSAKEA 154 (213)
T ss_pred HHHHHHHHh---hhhhhhhhcccch
Confidence 554444432 3455667788876
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-09 Score=103.18 Aligned_cols=147 Identities=23% Similarity=0.290 Sum_probs=101.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+..|+|+++|.+++|||-|+..++..++.+.+.. |-.+...... ..-+|..+ ...||
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks--TIGvef~t~t-----------~~vd~k~v---------kaqIW 68 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS--TIGVEFATRT-----------VNVDGKTV---------KAQIW 68 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCccccc--ceeEEEEeec-----------eeecCcEE---------EEeee
Confidence 34679999999999999999999998877643322 1111111000 11133322 47899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcC---CeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWK---KKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~---~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||.|+ ++++.++..|.+.|-..++|+|..+..|.+.. +||++|+.+. .++++|.||+|+..- ..+-.
T Consensus 69 DTAGQ----ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l----raV~t- 139 (222)
T KOG0087|consen 69 DTAGQ----ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL----RAVPT- 139 (222)
T ss_pred cccch----hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc----cccch-
Confidence 99997 78888999999999999999999988877766 4888888644 578899999999752 11111
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+..+.+...+...++.+||..+
T Consensus 140 --e~~k~~Ae~~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 140 --EDGKAFAEKEGLFFLETSALDA 161 (222)
T ss_pred --hhhHhHHHhcCceEEEeccccc
Confidence 1111122224567889999876
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.2e-09 Score=111.94 Aligned_cols=151 Identities=11% Similarity=0.049 Sum_probs=117.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhc
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTM 178 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~ 178 (921)
..++.+++|+++|.+.||+|.+.++.++-.+..+++.++|+. |+ ++..++|+ +|+.+.+. ..
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv--------~VE~ElG~----vgg~e~~v-----~~ 147 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGV--------SVEAELGA----VGGDEGGA-----LY 147 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC--------eEEeecCc----ccCCCCCc-----cc
Confidence 446889999999999999999999999999999999999998 76 45556664 66655432 11
Q ss_pred ccCCCCccccCeEEEecC-CHHHHHcccccCCCCEEEeCCC----CC----CCCCcc-hhhhhhcCCCCEEEEcC--CCc
Q 002437 179 KDSMSESVVLPLVGRNVQ-TLDAAFNASSSEGADFLVCCFG----EG----QKADVI-ENSLFTNVKIPIFIMNA--SPL 246 (921)
Q Consensus 179 ~~~~~~~~~~~~ig~S~h-~~~e~~~A~~~~gaDyv~~gpv----Tk----~~~g~~-~~~~~~~~~~Pv~aiGG--i~~ 246 (921)
+ + .|.|++ +++++.+...+.|+||+.+ ++ ++ ++.+++ +..+++.+++|+++.|| |+.
T Consensus 148 ~---~-------~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~ 216 (286)
T PRK06801 148 G---E-------ADSAKFTDPQLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISD 216 (286)
T ss_pred C---C-------cccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCH
Confidence 1 1 134565 5699888834799999998 55 22 123444 57888888999999999 999
Q ss_pred cChHHHHHcCCcEEEEeecccccchHHHHHhh
Q 002437 247 VDVSKFLKSGASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~~ 278 (921)
+++.++.++|+.+|.+..+....|.+.+.+.+
T Consensus 217 e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~ 248 (286)
T PRK06801 217 ADFRRAIELGIHKINFYTGMSQAALAAVEQRM 248 (286)
T ss_pred HHHHHHHHcCCcEEEehhHHHHHHHHHHHHHH
Confidence 99999999999999998888888777776554
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.5e-08 Score=108.64 Aligned_cols=157 Identities=21% Similarity=0.254 Sum_probs=117.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCC--CCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKR--YLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~--~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.|+-+|+...|||||+.++.|.. .+| .+...+|.++.++.+...+ ..+.|||.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d------------------------~~~~fIDv 57 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED------------------------GVMGFIDV 57 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC------------------------CceEEeeC
Confidence 57889999999999999999863 233 3445677766665443322 13899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCC-eEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKK-KVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~-~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
||. ++.-.-+...+...|..++|++++++.+.+..+.+.-+.-.+. +.++|+||+|...+ ..+++..+.+...+
T Consensus 58 pgh----~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~-~r~e~~i~~Il~~l 132 (447)
T COG3276 58 PGH----PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE-ARIEQKIKQILADL 132 (447)
T ss_pred CCc----HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH-HHHHHHHHHHHhhc
Confidence 997 4444445555678999999999999998888888887777665 56999999999854 45666666655544
Q ss_pred HHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 522 MKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ....++|.+|+..+ .|+++|.++|.+...
T Consensus 133 ~----l~~~~i~~~s~~~g---------------------------~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 133 S----LANAKIFKTSAKTG---------------------------RGIEELKNELIDLLE 162 (447)
T ss_pred c----cccccccccccccC---------------------------CCHHHHHHHHHHhhh
Confidence 4 45688999999987 799999999888773
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=102.43 Aligned_cols=132 Identities=20% Similarity=0.328 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|.++|+.|||||+|+..|......++ .|...... .+.. +.+..+.+.+||+|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T---~tS~e~n~-~~~~---------------------~~~~~~~~~lvD~P 57 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT---VTSMENNI-AYNV---------------------NNSKGKKLRLVDIP 57 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------SSEEE-ECCG---------------------SSTCGTCECEEEET
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe---eccccCCc-eEEe---------------------ecCCCCEEEEEECC
Confidence 46899999999999999999998743221 11111111 1110 01111358999999
Q ss_pred CCChhhhHHHHHHHH--hcCCCCEEEEEEeCCCCCC--HHHHHHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 444 GTNVILQRQQRLTEE--FVPRADLVLFVISADRPLT--ESEVVFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 444 G~~~~~~~~~~~~~~--~l~~aD~il~V~da~~~~t--~~e~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|....... .... +...+..||||+|+..... ....++|-.+ ...+.|+++++||.|+... .....+
T Consensus 58 GH~rlr~~---~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A-~~~~~I 133 (181)
T PF09439_consen 58 GHPRLRSK---LLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA-KPPKKI 133 (181)
T ss_dssp T-HCCCHH---HHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT----HHHH
T ss_pred CcHHHHHH---HHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc-CCHHHH
Confidence 97543322 2333 5788999999999874110 1111233222 2466899999999999864 223445
Q ss_pred HHHHHHHHHHh
Q 002437 514 ISFVKENTMKL 524 (921)
Q Consensus 514 ~~~~~~~~~~~ 524 (921)
+..+...+..+
T Consensus 134 k~~LE~Ei~~l 144 (181)
T PF09439_consen 134 KKLLEKEIDKL 144 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-08 Score=103.54 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=85.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+++|..++||||..+.+.+.-... +.....|..+....... .+. -.+.+||+||
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~-------------~~~----------~~l~iwD~pG 57 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF-------------LSF----------LPLNIWDCPG 57 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC-------------TTS----------CEEEEEEE-S
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec-------------CCC----------cEEEEEEcCC
Confidence 58999999999999999999864211 11222333333222110 111 1489999999
Q ss_pred CChhhhH-HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH----HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 445 TNVILQR-QQRLTEEFVPRADLVLFVISADRPLTESEVV----FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 445 ~~~~~~~-~~~~~~~~l~~aD~il~V~da~~~~t~~e~~----~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.....+. .........+.++++|||+|+....-..+.. ++..+.+ .+.++.++++|+|+..+ +..+++.+..
T Consensus 58 q~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~-~~r~~~~~~~ 136 (232)
T PF04670_consen 58 QDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE-DEREEIFRDI 136 (232)
T ss_dssp SCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H-HHHHHHHHHH
T ss_pred ccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH-HHHHHHHHHH
Confidence 9655332 1222445568999999999998444455554 3444444 34579999999999854 4555555555
Q ss_pred HHHHHHhhCCC---CCeEEEecccc
Q 002437 518 KENTMKLLNIE---NVTIYPVSARS 539 (921)
Q Consensus 518 ~~~~~~~~~~~---~~~v~~vSA~~ 539 (921)
.+.+.+.+... ...+|.+|-..
T Consensus 137 ~~~i~~~~~~~~~~~~~~~~TSI~D 161 (232)
T PF04670_consen 137 QQRIRDELEDLGIEDITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHTT-TSEEEEEE-TTS
T ss_pred HHHHHHHhhhccccceEEEeccCcC
Confidence 55555544332 36677777643
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-08 Score=101.59 Aligned_cols=187 Identities=18% Similarity=0.219 Sum_probs=113.2
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCc--cchhhcccccCCCeEEeecCCCccccc
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLA--SEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
+...+.+|+.+|..+.|||||..|++..-... + .. ....|...+ .++..+.......++..... -+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~-~-~~-----~~~~y~~id~aPeEk~rGITIntahveyet~---~rhy 77 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKK-G-GA-----EAKAYDQIDNAPEEKARGITINTAHVEYETA---NRHY 77 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhh-c-cc-----cccchhhhccCchHhhcCceeccceeEEecC---CceE
Confidence 44567899999999999999999987421100 0 00 000111111 11111211111111111111 1358
Q ss_pred EEEeCCCCChhhhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCC-eEEEEEeCCCCCCChHHHHHH
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFV---PRADLVLFVISADRPLTESEVVFLRYTQQWKK-KVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~-~vivVlNK~D~~~~~~~~~~v 513 (921)
..||+||.- ..+++.+ ...|..|+|+++.++...+.++.+-..++.+. .+++++||+|++++++-++.+
T Consensus 78 ahVDcPGHa-------DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelV 150 (394)
T COG0050 78 AHVDCPGHA-------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELV 150 (394)
T ss_pred EeccCCChH-------HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHH
Confidence 899999953 2344443 56799999999988777777777777777776 578899999999875556655
Q ss_pred HHHHHHHHHHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...+++.+.. ++. .+.||+.-||..++... ..|. .-+.+|.+.+.+++..
T Consensus 151 emEvreLLs~-y~f~gd~~Pii~gSal~ale~~------------------~~~~-~~i~eLm~avd~yip~ 202 (394)
T COG0050 151 EMEVRELLSE-YGFPGDDTPIIRGSALKALEGD------------------AKWE-AKIEELMDAVDSYIPT 202 (394)
T ss_pred HHHHHHHHHH-cCCCCCCcceeechhhhhhcCC------------------cchH-HHHHHHHHHHHhcCCC
Confidence 5556655544 344 46788888988775432 2232 4466777777776654
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=114.86 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=96.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.|.++|+|+..+|||-|+..+.+.++.-......|..+-...+....... .......++.-....| ++.+|||
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e-~tk~~~~~~K~~~kvP-----g~lvIdt 547 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIRE-KTKELKKDAKKRLKVP-----GLLVIDT 547 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHH-HHHHHHhhhhhhcCCC-----eeEEecC
Confidence 357899999999999999999999988776666666654332222111000 0011111222112222 5899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||. +.+..+.......||++|+|+|..+++..+..+-|..|+..+.|+||.+||+|.+..
T Consensus 548 pgh----EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYg 607 (1064)
T KOG1144|consen 548 PGH----ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYG 607 (1064)
T ss_pred CCc----hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcc
Confidence 996 455566677778999999999999999888889999999999999999999998755
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-06 Score=95.59 Aligned_cols=144 Identities=19% Similarity=0.291 Sum_probs=98.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccc----------hh----------------
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASE----------EQ---------------- 414 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~----------~~---------------- 414 (921)
+..|+|+|+|..++||||++..+....++|.|.+. .|..+.-+.....+.. ..
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 45689999999999999999999999999977664 4444444433332211 00
Q ss_pred hcccccCCCe------EEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCCCCEEEEEEeCCCC-CCH
Q 002437 415 QRCERHPDGQ------YICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPRADLVLFVISADRP-LTE 478 (921)
Q Consensus 415 ~~~~~~~~g~------~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~aD~il~V~da~~~-~t~ 478 (921)
.......+|+ +......|-|..+++||.||+.+. .+....+...|+.+.++||+++.-.+- ...
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence 0011122333 345566788889999999998432 234567888999999999999843321 112
Q ss_pred HH-HHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 479 SE-VVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 479 ~e-~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
+. .++..++..++...|+|++|.|+..
T Consensus 466 SnVTDLVsq~DP~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRRTIFVLTKVDLAE 493 (980)
T ss_pred hhHHHHHHhcCCCCCeeEEEEeecchhh
Confidence 22 2466777788999999999999864
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.6e-09 Score=111.76 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=67.3
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCCCc
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNASPL 246 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi~~ 246 (921)
++..+|+.++ +. + +||+||||.+|+.+| ...||||+++.+ .|++ .+++++.. ++|++|+|||++
T Consensus 177 ~v~~aR~~~~---~~-~---~Igvsv~tleea~~A-~~~gaDyI~lD~-----~~~e~l~~~~~~~~~~i~i~AiGGIt~ 243 (277)
T PRK08072 177 AVTSVREKLG---HM-V---KIEVETETEEQVREA-VAAGADIIMFDN-----RTPDEIREFVKLVPSAIVTEASGGITL 243 (277)
T ss_pred HHHHHHHhCC---CC-C---EEEEEeCCHHHHHHH-HHcCCCEEEECC-----CCHHHHHHHHHhcCCCceEEEECCCCH
Confidence 5678888875 44 3 799999999999999 799999999964 3444 45666554 478889999999
Q ss_pred cChHHHHHcCCcEEEEee
Q 002437 247 VDVSKFLKSGASGFVISL 264 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~ 264 (921)
+|+.++.++|++|||+..
T Consensus 244 ~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 244 ENLPAYGGTGVDYISLGF 261 (277)
T ss_pred HHHHHHHHcCCCEEEECh
Confidence 999999999999998754
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=109.56 Aligned_cols=160 Identities=14% Similarity=0.078 Sum_probs=109.2
Q ss_pred chHHHHHHHHhcCCcEEEE-eCCCCCHHHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCCHH
Q 002437 100 DALDLIDEAVAKFVGIVVL-NGGEASGKSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLPAI 172 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vql-R~k~~~~~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~~~ 172 (921)
+..+.......+|+..+-. =++..-... ++..+.++..+ ..+++..| .++.|...|||+|||....++..
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~-~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~ 147 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGS-LEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDE 147 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCC-HHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHH
Confidence 4456666666888877644 222211111 22333333332 45655544 35677889999999999998876
Q ss_pred HHHHhcccCCCCccccCeEEEe----cCCHHHHHcccccCCCCEEEeCCCCC--CCCCcc-hhhhhhcC--CCCEEEEcC
Q 002437 173 VARNTMKDSMSESVVLPLVGRN----VQTLDAAFNASSSEGADFLVCCFGEG--QKADVI-ENSLFTNV--KIPIFIMNA 243 (921)
Q Consensus 173 ~~r~~~~~~~~~~~~~~~ig~S----~h~~~e~~~A~~~~gaDyv~~gpvTk--~~~g~~-~~~~~~~~--~~Pv~aiGG 243 (921)
..+.+.. .. + .+|.+ |||.+|+.+| .+.|+||+++++.+. ..+.+. ..++.... ..|++|.||
T Consensus 148 ~l~~li~---~a-~---~lGl~~lvevh~~~E~~~A-~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegG 219 (260)
T PRK00278 148 QLKELLD---YA-H---SLGLDVLVEVHDEEELERA-LKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESG 219 (260)
T ss_pred HHHHHHH---HH-H---HcCCeEEEEeCCHHHHHHH-HHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeC
Confidence 6766653 11 1 34666 9999999999 799999999998622 122333 35555544 369999999
Q ss_pred C-CccChHHHHHcCCcEEEEeecccccc
Q 002437 244 S-PLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 244 i-~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
| +++++..+.++|++||+|.++.++.-
T Consensus 220 I~t~ed~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 220 IFTPEDLKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 9 69999999999999999999988863
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=108.46 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=99.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCC--CHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEA--SGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~--~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.+...+++|++.|++.|++|.+.. ...++.+.+.++.++|+. |.+++++. .++|+|+... ..
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~--------~~~g~~~e~~-~~------ 158 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMM--------YPRGPGIKNE-YD------ 158 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEE--------ecCCCccCCC-cc------
Confidence 556779999999999999997644 467789999999999998 99999865 3679999432 11
Q ss_pred hcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCccC-------
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPLVD------- 248 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~------- 248 (921)
++ .+. ..++.| .+.|||||=.+.. .++. .+++.+..++||+|+|||+.+|
T Consensus 159 ------~~-----~i~------~a~~~a-~e~GAD~vKt~~~----~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~ 216 (267)
T PRK07226 159 ------PE-----VVA------HAARVA-AELGADIVKTNYT----GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEM 216 (267)
T ss_pred ------HH-----HHH------HHHHHH-HHHCCCEEeeCCC----CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHH
Confidence 11 011 112445 5789999955521 2333 4677777789999999999886
Q ss_pred hHHHHHcCCcEEEEeeccccc
Q 002437 249 VSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 249 ~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+.+++++||.|+++.++.+..
T Consensus 217 v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 217 VRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHcCCcEEehhhhhhcC
Confidence 778889999999888887765
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=93.58 Aligned_cols=144 Identities=22% Similarity=0.270 Sum_probs=96.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++..|+|.+++|||||+-.+....+. .++..|+..--.++--+ -+|.- -.+.||||
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs-~sYitTiGvDfkirTv~------------i~G~~---------VkLqIwDt 64 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFS-GSYITTIGVDFKIRTVD------------INGDR---------VKLQIWDT 64 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccc-cceEEEeeeeEEEEEee------------cCCcE---------EEEEEeec
Confidence 3467789999999999999988877543 23332222111111100 01211 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcC--CeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWK--KKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~--~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
.|. +++..++..|.+..+++++|+|..+..+..+. .||+.++... .|-++|.||.|...... +-++.+.+
T Consensus 65 AGq----ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~-- 138 (198)
T KOG0079|consen 65 AGQ----ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAF-- 138 (198)
T ss_pred ccH----HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHH--
Confidence 996 77889999999999999999999988776664 5888888755 47789999999864410 11222222
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..--+..+|..|+++.
T Consensus 139 ------A~~mgie~FETSaKe~ 154 (198)
T KOG0079|consen 139 ------ALQMGIELFETSAKEN 154 (198)
T ss_pred ------HHhcCchheehhhhhc
Confidence 1113477899999875
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-08 Score=105.27 Aligned_cols=149 Identities=23% Similarity=0.364 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
-.|++.++|+.|.|||||||.|++..+...... +.|..+.. .+....++|.-.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~-----------~~~~iee~g~~l--------- 79 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIES-----------TKVEIEENGVKL--------- 79 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeee-----------eeeeecCCCeEE---------
Confidence 359999999999999999999998855432100 11111111 111122233321
Q ss_pred ccEEEeCCCCChhhh----------HHHHHHHHhc-------------CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcC
Q 002437 436 EMIIVDTPGTNVILQ----------RQQRLTEEFV-------------PRADLVLFVISAD-RPLTESEVVFLRYTQQWK 491 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~----------~~~~~~~~~l-------------~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~ 491 (921)
+++++||||+++... -.......|+ .+.|++||.+... +++..-+..+++.+.. .
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~ 158 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-K 158 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-c
Confidence 589999999964311 1111222222 2788999999876 5588999999998876 4
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 492 KKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 492 ~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
.++|.|+-|+|... .+++...++.+.+.+... .++||....
T Consensus 159 vNiIPVI~KaD~lT-~~El~~~K~~I~~~i~~~----nI~vf~fp~ 199 (366)
T KOG2655|consen 159 VNLIPVIAKADTLT-KDELNQFKKRIRQDIEEH----NIKVFDFPT 199 (366)
T ss_pred ccccceeeccccCC-HHHHHHHHHHHHHHHHHc----CcceecCCC
Confidence 79999999999994 477888888887776553 345554433
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.1e-08 Score=119.12 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=80.1
Q ss_pred CHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-cccccEEEeCCCCChhhhHHHH
Q 002437 376 GKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-ILKEMIIVDTPGTNVILQRQQR 454 (921)
Q Consensus 376 GKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~l~~l~lvDTPG~~~~~~~~~~ 454 (921)
+||||+.+|.+.++.......-|..+-.+.......... .+.....+..+ -..++.||||||.. .+..
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~-------~~~~~~~~~~~~~~p~i~fiDTPGhe----~F~~ 541 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKI-------CGPLLKLLKAEIKIPGLLFIDTPGHE----AFTS 541 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccc-------cccccccccccCCcCcEEEEECCCcH----HHHH
Confidence 599999999999987666666676554333221110000 00000000000 01358999999963 3344
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
+.......+|++++|+|++++++.+..+.+..+...+.|+++|+||+|+..
T Consensus 542 lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 542 LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 455567889999999999988888888888888888899999999999974
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.1e-08 Score=104.95 Aligned_cols=104 Identities=18% Similarity=0.000 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++++++|.||+|||||+||++.....+.++++||-++........+..............-+.+. .+.+||.+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~------~ve~vDIA 75 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPA------PVEFVDIA 75 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEee------eeEEEEec
Confidence 368999999999999999999999877788999998877654433221111111111111112222 48999999
Q ss_pred CCChh---hhHHHHHHHHhcCCCCEEEEEEeCC
Q 002437 444 GTNVI---LQRQQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 444 G~~~~---~~~~~~~~~~~l~~aD~il~V~da~ 473 (921)
|+-.. .+.....-..-++++|+|+.|+++.
T Consensus 76 GLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 76 GLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 98311 1222334556679999999999986
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-08 Score=102.91 Aligned_cols=167 Identities=23% Similarity=0.275 Sum_probs=97.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCcc------------chhhcccccCCCeEEee
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLAS------------EEQQRCERHPDGQYICY 428 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~------------~~~~~~~~~~~g~~~~~ 428 (921)
....++..+|...-||||||-.|+.+.-. ..+...+- ....-+++..+. .+.++..... --|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l-~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITID-VAYRy- 80 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASL-ERDSKRKGTQGEKIDLALLVDGLEAEREQGITID-VAYRY- 80 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHH-hcccccccCCCCccchhhhhhhhHHHHhcCceEE-EEeee-
Confidence 35678999999999999999999876322 11111000 000000000000 0001111100 00111
Q ss_pred cCCCcccccEEEeCCCCChhhhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHH--HHHHhhhcCCeEEEEEeCCCC
Q 002437 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEFV---PRADLVLFVISADRPLTESEVV--FLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 429 ~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~--~l~~l~~~~~~vivVlNK~D~ 503 (921)
-+---+.+.+.||||. ++.++++. ..||+.|+++|+..+..++.++ ++..+.. -+.+++.+||+|+
T Consensus 81 -FsT~KRkFIiADTPGH-------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDL 151 (431)
T COG2895 81 -FSTEKRKFIIADTPGH-------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG-IRHVVVAVNKMDL 151 (431)
T ss_pred -cccccceEEEecCCcH-------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC-CcEEEEEEeeecc
Confidence 1111256999999994 44566655 7899999999999887666664 3333332 2578999999999
Q ss_pred CCChHH-HHHHHHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 504 YQNAFE-LEEAISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 504 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
++-.++ .+++...... +...++.....++|+||..|-
T Consensus 152 vdy~e~~F~~I~~dy~~-fa~~L~~~~~~~IPiSAl~GD 189 (431)
T COG2895 152 VDYSEEVFEAIVADYLA-FAAQLGLKDVRFIPISALLGD 189 (431)
T ss_pred cccCHHHHHHHHHHHHH-HHHHcCCCcceEEechhccCC
Confidence 976433 4444444443 334456677899999999883
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.2e-09 Score=110.58 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhc----CCCCEEEE
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTN----VKIPIFIM 241 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~----~~~Pv~ai 241 (921)
+.+.+...+|+..+ ++ + .||+||||++|+.+| ...|+|||.++|++. .. ..++.+. .++|++|+
T Consensus 166 ~~~~~v~~~r~~~~---~~-~---~I~vev~t~eea~~A-~~~gaD~I~ld~~~~--e~--l~~~v~~i~~~~~i~i~as 233 (269)
T cd01568 166 GITEAVKRARAAAP---FE-K---KIEVEVETLEEAEEA-LEAGADIIMLDNMSP--EE--LKEAVKLLKGLPRVLLEAS 233 (269)
T ss_pred CHHHHHHHHHHhCC---CC-C---eEEEecCCHHHHHHH-HHcCCCEEEECCCCH--HH--HHHHHHHhccCCCeEEEEE
Confidence 33457888999874 34 3 699999999999999 799999999999822 11 1222222 37899999
Q ss_pred cCCCccChHHHHHcCCcEEEE
Q 002437 242 NASPLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 242 GGi~~~~~~~~~~~Ga~gva~ 262 (921)
|||+++|+.++.++|+++|++
T Consensus 234 GGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 234 GGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999986
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-08 Score=95.46 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=96.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC------CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL------KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~------~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
+.+.|++.|.-|||||||+.++-..... |....||..- . .|.+... ...
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL-n-------------------ig~i~v~-----~~~ 70 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL-N-------------------IGTIEVC-----NAP 70 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce-e-------------------ecceeec-----cce
Confidence 4588999999999999999988543221 1112222110 0 0111000 024
Q ss_pred cEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHH-HHHHHHH----hhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 437 MIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTES-EVVFLRY----TQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 437 l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~-e~~~l~~----l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
+.+||.-|. +...+++..|+..|++|+||+|+.++...+ ....++. -...+.|+++..||-|+.+. -+..
T Consensus 71 l~fwdlgGQ----e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~-~~~~ 145 (197)
T KOG0076|consen 71 LSFWDLGGQ----ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA-MEAA 145 (197)
T ss_pred eEEEEcCCh----HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh-hhHH
Confidence 899999997 667889999999999999999998743222 2222332 23467899999999998744 3444
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++...... .+..+....++.||||..+
T Consensus 146 El~~~~~~--~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 146 ELDGVFGL--AELIPRRDNPFQPVSALTG 172 (197)
T ss_pred HHHHHhhh--hhhcCCccCccccchhhhc
Confidence 44444332 3445667889999999988
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.9e-08 Score=98.18 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=94.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||+|+..+++..+. ..+.||......-.. .. +|.. ..+.|+||+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~------------~v-~~~~---------~~l~ilDt~ 59 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKEL------------TV-DGEV---------CMLEILDTA 59 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEE------------EE-CCEE---------EEEEEEcCC
Confidence 578999999999999999999988764 335565542111111 11 1221 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCC-hHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQN-AFELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~-~~~~~~v~~~~ 517 (921)
|. +++..+-..++..+|++++|++.++..+.++.. ++.+|.+ ...|+++|.||+|+... .-..++..
T Consensus 60 g~----~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~--- 132 (196)
T KOG0395|consen 60 GQ----EEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGK--- 132 (196)
T ss_pred Cc----ccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHH---
Confidence 94 344556777889999999999999887777664 4445522 33599999999999753 11112211
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+ .....++.+.+||+..
T Consensus 133 --~l---a~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 133 --AL---ARSWGCAFIETSAKLN 150 (196)
T ss_pred --HH---HHhcCCcEEEeeccCC
Confidence 11 2224577899999764
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-08 Score=117.49 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=102.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.....+|+++|+..+|||||...|+-..-.......+...-+.. +....+.+|..........++|.. -..++||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~---D~~e~EqeRGITI~saa~s~~~~~--~~~iNlI 81 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATM---DWMEQEQERGITITSAATTLFWKG--DYRINLI 81 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccC---CCcHHHHhcCCEEeeeeeEEEEcC--ceEEEEe
Confidence 34567999999999999999999974321111111111111111 112223344444444444444432 1258999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
||||.-++..+ +...++-+|..|+|+|+..+...+....++++.+.+.|.++++||+|.... ++..+.+.+..+
T Consensus 82 DTPGHVDFt~E----V~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a--~~~~~~~~l~~~ 155 (697)
T COG0480 82 DTPGHVDFTIE----VERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA--DFYLVVEQLKER 155 (697)
T ss_pred CCCCccccHHH----HHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc--ChhhhHHHHHHH
Confidence 99998655433 666778899999999999999888888999999999999999999999865 555666666665
Q ss_pred HHH
Q 002437 521 TMK 523 (921)
Q Consensus 521 ~~~ 523 (921)
+..
T Consensus 156 l~~ 158 (697)
T COG0480 156 LGA 158 (697)
T ss_pred hCC
Confidence 443
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=106.42 Aligned_cols=100 Identities=19% Similarity=0.080 Sum_probs=61.3
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
|+++|.||+|||||+|+|++.+....+..+||..+........+......+........ .| ..+.++|+||+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~---~~----~~i~lvD~pGl~ 73 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKI---VP----ATIEFVDIAGLV 73 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCcee---ee----eEEEEEECCCcC
Confidence 57999999999999999999998666777788665543322111100000000000000 00 148999999985
Q ss_pred hhhhH---HHHHHHHhcCCCCEEEEEEeCC
Q 002437 447 VILQR---QQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 447 ~~~~~---~~~~~~~~l~~aD~il~V~da~ 473 (921)
..... ........++.+|++++|+|+.
T Consensus 74 ~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 74 KGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred CCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 32222 2223445568899999999975
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-07 Score=91.81 Aligned_cols=130 Identities=25% Similarity=0.343 Sum_probs=77.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..+..|.++|..+||||+|+-.|......++-..-...+.+ +++++ ..+.|||
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~-~r~gs--------------------------~~~~LVD 88 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEAT-YRLGS--------------------------ENVTLVD 88 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceee-EeecC--------------------------cceEEEe
Confidence 34578999999999999999888766332110000000111 11110 1379999
Q ss_pred CCCCChhhhHHHHHHHHhcC---CCCEEEEEEeCCCCC--CHHHHHHHHHh------hhcCCeEEEEEeCCCCCCChHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVP---RADLVLFVISADRPL--TESEVVFLRYT------QQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~---~aD~il~V~da~~~~--t~~e~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
.||. ++......++++ .+-+||||+|+.... -..--+||-.+ ...+.|+++.+||.|+.-.. ..
T Consensus 89 ~PGH----~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk-t~ 163 (238)
T KOG0090|consen 89 LPGH----SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK-TA 163 (238)
T ss_pred CCCc----HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC-cH
Confidence 9996 455556667775 799999999986322 11222333222 24567999999999997542 22
Q ss_pred HHHHHHHHHHHHH
Q 002437 511 EEAISFVKENTMK 523 (921)
Q Consensus 511 ~~v~~~~~~~~~~ 523 (921)
+.+++++...+..
T Consensus 164 ~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 164 EKIRQQLEKEIHK 176 (238)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=92.72 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+|+++|--||||||++..|--.++..+ .||-. .+..+.|.. -.+.+||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt--vPTiGfnVE~v~ykn--------------------------~~f~vWD 67 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--VPTIGFNVETVEYKN--------------------------ISFTVWD 67 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC--CCccccceeEEEEcc--------------------------eEEEEEe
Confidence 457999999999999999998876655433 44432 222233321 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
.-|.. +....+..|++..+.+|||+|+++...-.+. ++.+.+.. ...|+++..||.|+...-. ..++.+.
T Consensus 68 vGGq~----k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-~~ei~~~ 142 (181)
T KOG0070|consen 68 VGGQE----KLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS-AAEITNK 142 (181)
T ss_pred cCCCc----ccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC-HHHHHhH
Confidence 99984 4456799999999999999999875533332 23333333 3579999999999876521 1222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. +.+ +....-.|..++|.+|
T Consensus 143 L~--l~~-l~~~~w~iq~~~a~~G 163 (181)
T KOG0070|consen 143 LG--LHS-LRSRNWHIQSTCAISG 163 (181)
T ss_pred hh--hhc-cCCCCcEEeecccccc
Confidence 21 111 1223456777788776
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=104.26 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=101.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC------------CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK------------DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~------------~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
....++|+|...+|||||+-.|+-.---+ ...++.. +.+-..-+...++.++......+...+.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~S--f~yawiLDeT~eERerGvTm~v~~~~fe-- 251 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSS--FAYAWILDETKEERERGVTMDVKTTWFE-- 251 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcc--eeeeEEeccchhhhhcceeEEeeeEEEe--
Confidence 56789999999999999999886321000 0011111 1111112222333344333333332221
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCH-------HHHHHHHHhhhcC-CeEEEEEeCCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE-------SEVVFLRYTQQWK-KKVVFVLNKSD 502 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~-------~e~~~l~~l~~~~-~~vivVlNK~D 502 (921)
+--+.++|+|+||..++.+. +..-...||+.++|+|++...-+ +..+....++..+ ..+||++||+|
T Consensus 252 -s~~~~~tliDaPGhkdFi~n----mi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD 326 (603)
T KOG0458|consen 252 -SKSKIVTLIDAPGHKDFIPN----MISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMD 326 (603)
T ss_pred -cCceeEEEecCCCccccchh----hhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccc
Confidence 11145899999997544433 33445789999999999853221 1223333334444 57999999999
Q ss_pred CCC-ChHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchH
Q 002437 503 LYQ-NAFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 503 ~~~-~~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l 541 (921)
.+. +++.++++...+..-+.+..+. ..+.++|+|+..|-
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~Ge 368 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGE 368 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCC
Confidence 985 3455777777777766555565 34589999999883
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=101.20 Aligned_cols=145 Identities=19% Similarity=0.295 Sum_probs=102.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
....||.|+|+|++|+||||||..|..+-.- .-....+..+|++.... +.+++
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk-~ti~~i~GPiTvvsgK~--------------------------RRiTf 117 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK-QTIDEIRGPITVVSGKT--------------------------RRITF 117 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHH-hhhhccCCceEEeecce--------------------------eEEEE
Confidence 4456788999999999999999999865211 01111122222322111 35899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
+.+|. ++ ........-||+||+++|++-++.-+.++||..+..++.| ++.|++..|+..+...+..+.+.++
T Consensus 118 lEcp~--Dl-----~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlk 190 (1077)
T COG5192 118 LECPS--DL-----HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLK 190 (1077)
T ss_pred EeChH--HH-----HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHh
Confidence 99993 22 2234455779999999999999888889999998888865 7789999999999888888888777
Q ss_pred HHHHHhhCCCCCeEEEecccc
Q 002437 519 ENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~ 539 (921)
.++-..+. .+...|.+|...
T Consensus 191 hRfWtEiy-qGaKlFylsgV~ 210 (1077)
T COG5192 191 HRFWTEIY-QGAKLFYLSGVE 210 (1077)
T ss_pred hhHHHHHc-CCceEEEecccc
Confidence 66554432 356788887643
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=86.33 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=93.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
-.++++++|+.|+|||.|+..+...++.- +..+|. . +.++..- ..-.|..+ .+.||||
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkD-dssHTi-G---veFgSrI--------inVGgK~v---------KLQIWDT 65 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKD-DSSHTI-G---VEFGSRI--------VNVGGKTV---------KLQIWDT 65 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcc-ccccee-e---eeeccee--------eeecCcEE---------EEEEeec
Confidence 45899999999999999999998766531 112221 1 1111100 00112211 4899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCe---EEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWKKK---VVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~---vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
.|. +++..+++.|++.|-..++|+|+.+..+...+ .||..++....| ++++.||.|+....+ ...+..+
T Consensus 66 AGQ----ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~-- 139 (214)
T KOG0086|consen 66 AGQ----ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASR-- 139 (214)
T ss_pred ccH----HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHh--
Confidence 997 78889999999999999999999987776665 366666654443 556779999875411 1122222
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+........+..||++|
T Consensus 140 ------FaqEnel~flETSa~TG 156 (214)
T KOG0086|consen 140 ------FAQENELMFLETSALTG 156 (214)
T ss_pred ------hhcccceeeeeeccccc
Confidence 22223456778899887
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=104.05 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=70.4
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.+.||||||.-++.-+ ..+.+..|...|+|+|++++...+...-.-..-+++..++.|+||+|+... +.+.+..
T Consensus 77 ~lnlIDTPGHVDFsYE----VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A--dpervk~ 150 (603)
T COG0481 77 VLNLIDTPGHVDFSYE----VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA--DPERVKQ 150 (603)
T ss_pred EEEEcCCCCccceEEE----ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC--CHHHHHH
Confidence 3899999998544322 334456688999999999987666655444455678899999999999865 3344444
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchH
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
+ +.+.++.+....+.+||++|+
T Consensus 151 e----Ie~~iGid~~dav~~SAKtG~ 172 (603)
T COG0481 151 E----IEDIIGIDASDAVLVSAKTGI 172 (603)
T ss_pred H----HHHHhCCCcchheeEecccCC
Confidence 4 455678888889999999984
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-08 Score=104.59 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=69.1
Q ss_pred CeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CC
Q 002437 160 SGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KI 236 (921)
Q Consensus 160 ~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~ 236 (921)
.|+|.+ ...+|+.. |+ + .|+++|||.+|+.+| .+.|+|||.+++. +++ .+++.+.. ++
T Consensus 174 g~v~~a-----v~~~r~~~----~~-~---~I~VEv~tleea~eA-~~~gaD~I~LD~~-----~~e~l~~~v~~~~~~i 234 (277)
T PRK05742 174 GGIAQA-----VAAAHRIA----PG-K---PVEVEVESLDELRQA-LAAGADIVMLDEL-----SLDDMREAVRLTAGRA 234 (277)
T ss_pred CCHHHH-----HHHHHHhC----CC-C---eEEEEeCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhCCCC
Confidence 467773 66778764 55 3 699999999999999 8999999999866 333 34444433 79
Q ss_pred CEEEEcCCCccChHHHHHcCCcEEEEee
Q 002437 237 PIFIMNASPLVDVSKFLKSGASGFVISL 264 (921)
Q Consensus 237 Pv~aiGGi~~~~~~~~~~~Ga~gva~~~ 264 (921)
|++|+|||+++|+.++.++|+++|++..
T Consensus 235 ~leAsGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 235 KLEASGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred cEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 9999999999999999999999997644
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-08 Score=103.31 Aligned_cols=119 Identities=22% Similarity=0.286 Sum_probs=60.2
Q ss_pred ccEEEeCCCCChhh---hHHHHHHHHhcC-CCCEEEEEEeCCCCCCHHHHH--H---HHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVIL---QRQQRLTEEFVP-RADLVLFVISADRPLTESEVV--F---LRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~---~~~~~~~~~~l~-~aD~il~V~da~~~~t~~e~~--~---l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
++.|+||||+-... +....++...-+ ..=+++|++|+....+....- + +...-+.+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 58999999985432 222223333322 344789999988654433321 1 12233578999999999999963
Q ss_pred h--HHHHH---------H----HHHHHHHHHHhhCC-CCC-eEEEecccchHHhhcccccccccCcccccccCccccccc
Q 002437 507 A--FELEE---------A----ISFVKENTMKLLNI-ENV-TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINT 569 (921)
Q Consensus 507 ~--~~~~~---------v----~~~~~~~~~~~~~~-~~~-~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg 569 (921)
. ..++. . .+.+...+...+.. ... +++++|+..+ .|
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~---------------------------~~ 224 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDG---------------------------EG 224 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTT---------------------------TT
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCCh---------------------------HH
Confidence 1 11111 1 12233334444332 234 7899999876 78
Q ss_pred hHHHHHHHHHhh
Q 002437 570 FDKLEKLLYSFL 581 (921)
Q Consensus 570 ~~~L~~~l~~~l 581 (921)
+.+|...+.+.+
T Consensus 225 ~~~L~~~id~a~ 236 (238)
T PF03029_consen 225 MEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887653
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-07 Score=97.57 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=86.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++.+++.|.+|+|||||||.++..+.......+.+.....+.+... .+.+++||.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v------------------------~~~~~~vDl 190 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV------------------------GKSWYEVDL 190 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec------------------------cceEEEEec
Confidence 45899999999999999999999876543222223322222222111 135899999
Q ss_pred CCCC------hhhhHHHHHHHHhcCCC---CEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 443 PGTN------VILQRQQRLTEEFVPRA---DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~------~~~~~~~~~~~~~l~~a---D~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||++ .....+..++..|+.+- --+++.+|++.++...+...+..+.+.+.|+.+|+||+|....
T Consensus 191 PG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 191 PGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred CCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhh
Confidence 9942 12355677888887322 2456777999888888888999999999999999999998654
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.8e-08 Score=102.95 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=66.2
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc--hhhhhhc-CCCCEEEEcCCCc
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI--ENSLFTN-VKIPIFIMNASPL 246 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--~~~~~~~-~~~Pv~aiGGi~~ 246 (921)
....+|+.. |+ + .||+||||.+|+.+| .+.|+|||.+||+... ++. ...+... .++|++|+|||++
T Consensus 173 av~~~R~~~----~~-~---~IgVev~t~eea~~A-~~~gaD~I~ld~~~p~--~l~~~~~~~~~~~~~i~i~AsGGI~~ 241 (272)
T cd01573 173 ALARLRATA----PE-K---KIVVEVDSLEEALAA-AEAGADILQLDKFSPE--ELAELVPKLRSLAPPVLLAAAGGINI 241 (272)
T ss_pred HHHHHHHhC----CC-C---eEEEEcCCHHHHHHH-HHcCCCEEEECCCCHH--HHHHHHHHHhccCCCceEEEECCCCH
Confidence 356777765 55 3 689999999999999 7999999999998221 222 1223332 3699999999999
Q ss_pred cChHHHHHcCCcEEEEeeccc
Q 002437 247 VDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~ 267 (921)
+|+.++.++|+++| ++++..
T Consensus 242 ~ni~~~~~~Gvd~I-~vsai~ 261 (272)
T cd01573 242 ENAAAYAAAGADIL-VTSAPY 261 (272)
T ss_pred HHHHHHHHcCCcEE-EEChhh
Confidence 99999999999999 555553
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-06 Score=81.66 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=97.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+++.|+|..-+|||||+..++..++...+ .||... ....+.....+|.-+ .+.||||.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-dptvgv-----------dffarlie~~pg~ri---------klqlwdta 66 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGV-----------DFFARLIELRPGYRI---------KLQLWDTA 66 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccch-----------HHHHHHHhcCCCcEE---------EEEEeecc
Confidence 478999999999999999999987765322 333321 111222233334321 48999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhc----CCeE-EEEEeCCCCCCChHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQW----KKKV-VFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~----~~~v-ivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|. +++..+++.|++++-.++.|+|.++..+.+... +++..... .+++ .+|..|+|+... .++...-
T Consensus 67 gq----erfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----RqVt~EE 138 (213)
T KOG0091|consen 67 GQ----ERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQVTAEE 138 (213)
T ss_pred ch----HHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----ccccHHH
Confidence 97 788899999999999999999999887777664 44444321 2333 367899999743 2222222
Q ss_pred HHHHHHhhCCCCCeEEEecccchH
Q 002437 518 KENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
.+.+.. .....++.+||+.+-
T Consensus 139 aEklAa---~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 139 AEKLAA---SHGMAFVETSAKNGC 159 (213)
T ss_pred HHHHHH---hcCceEEEecccCCC
Confidence 222222 245789999999983
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.2e-07 Score=97.54 Aligned_cols=144 Identities=14% Similarity=0.123 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc
Q 002437 102 LDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKD 180 (921)
Q Consensus 102 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~ 180 (921)
++.+.+|++.|.+.|++|.+.++.++..+.++++.++|+. |+.+ ..++ |. +|.... +
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v--------E~El---G~-vg~~e~---------~- 138 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV--------EGEL---GT-IGNTGT---------S- 138 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE--------EEEE---ee-ccCccc---------c-
Confidence 5889999999999999999999999999999999999999 8877 2333 44 654321 0
Q ss_pred CCCCccccCeEEEe---cCCHHHHHcccccC-CCCEEEe-----CCC--C--CCCCCcc-hhhhhhcCCCCEEEEcCCC-
Q 002437 181 SMSESVVLPLVGRN---VQTLDAAFNASSSE-GADFLVC-----CFG--E--GQKADVI-ENSLFTNVKIPIFIMNASP- 245 (921)
Q Consensus 181 ~~~~~~~~~~ig~S---~h~~~e~~~A~~~~-gaDyv~~-----gpv--T--k~~~g~~-~~~~~~~~~~Pv~aiGGi~- 245 (921)
. .++.| .|+++|+.+. .+. |+||+.+ +++ | |+...++ ++++++.+++|+++.||++
T Consensus 139 -----~---~~~~~~~~~t~peea~~f-~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~ 209 (283)
T PRK08185 139 -----I---EGGVSEIIYTDPEQAEDF-VSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSAN 209 (283)
T ss_pred -----c---ccccccccCCCHHHHHHH-HHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCC
Confidence 0 12333 7899999998 554 9999999 555 4 3333343 5888888899999999875
Q ss_pred -ccChHHHHHcCCcEEEEeecccccchHHHHH
Q 002437 246 -LVDVSKFLKSGASGFVISLEDLSLFNDGVLS 276 (921)
Q Consensus 246 -~~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~ 276 (921)
.+++..+.+.|+.-|=+.......|...+.+
T Consensus 210 ~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~ 241 (283)
T PRK08185 210 PDAEIAESVQLGVGKINISSDMKYAFFKKVRE 241 (283)
T ss_pred CHHHHHHHHHCCCeEEEeChHHHHHHHHHHHH
Confidence 5568999999999996555554455544443
|
|
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=110.00 Aligned_cols=145 Identities=23% Similarity=0.318 Sum_probs=102.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccc---hhh---c--------------------
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE---EQQ---R-------------------- 416 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~---~~~---~-------------------- 416 (921)
..|.|+|+|..++||||+++++.|..++|.|....|+++.+.+....... ... +
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et 107 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSET 107 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhhH
Confidence 46899999999999999999999999999999999998887776443221 000 0
Q ss_pred --cc----ccCCCeEEeecCCCcccccEEEeCCCCCh---------hhhHHHHHHHHhcCCCCEEEEEEeCCC--CCCHH
Q 002437 417 --CE----RHPDGQYICYLPSPILKEMIIVDTPGTNV---------ILQRQQRLTEEFVPRADLVLFVISADR--PLTES 479 (921)
Q Consensus 417 --~~----~~~~g~~~~~~p~~~l~~l~lvDTPG~~~---------~~~~~~~~~~~~l~~aD~il~V~da~~--~~t~~ 479 (921)
.. ...+..+.....++...++++||+||+.. ...+...+...|+...+.++..+...+ -.+..
T Consensus 108 ~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~ 187 (657)
T KOG0446|consen 108 DRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSP 187 (657)
T ss_pred HHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcCH
Confidence 00 00011234455566667899999999842 234567788999988888877776543 12334
Q ss_pred HHHHHHHhhhcCCeEEEEEeCCCCCCCh
Q 002437 480 EVVFLRYTQQWKKKVVFVLNKSDLYQNA 507 (921)
Q Consensus 480 e~~~l~~l~~~~~~vivVlNK~D~~~~~ 507 (921)
-+.+.+.+...+..+|.|++|+|+.+..
T Consensus 188 alkiarevDp~g~RTigvitK~DlmdkG 215 (657)
T KOG0446|consen 188 ALVVAREVDPGGSRTLEVITKFDFMDKG 215 (657)
T ss_pred HHHHHHhhCCCccchhHHhhhHHhhhcC
Confidence 4455566666778999999999998653
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-07 Score=103.36 Aligned_cols=137 Identities=22% Similarity=0.188 Sum_probs=90.2
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc--ccc
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL--KEM 437 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l--~~l 437 (921)
.-....+|+++|.-.+|||+|+..|.++.. |....++.. ..+|.+.-..+.+|............++..-. .-+
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~~~e~---~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ 199 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSKNTEA---DLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLM 199 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecc-ccccccccc---cccccccchhhHhcCceEeecceEEEEecCcCceeee
Confidence 334457899999999999999999998765 222222221 22344433222333222222211111111111 127
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY 504 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~ 504 (921)
+++||||.-.+. .-+...+..+|++++|+|+..+.+-...++++..-+...|+.+|+||+|++
T Consensus 200 nilDTPGHVnF~----DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 200 NILDTPGHVNFS----DETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeecCCCcccch----HHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 999999974333 235556788999999999999998888889999888999999999999974
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=82.28 Aligned_cols=149 Identities=21% Similarity=0.256 Sum_probs=96.9
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
++....+|+|+|.-++|||+++..|+-.+..+ +...||..++........ .|. -..+.
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~------------rga---------rE~l~ 63 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETD------------RGA---------REQLR 63 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecC------------CCh---------hheEE
Confidence 34567899999999999999999987444333 344455544433322211 111 02489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHH-Hhhhc----CCeEEEEEeCCCCCCChHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLR-YTQQW----KKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~-~l~~~----~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|.||.|+.+. ..++-+.|+.-+|++++|++..++.+.+..+.|+ .|.+. ..|++++.||.|+..+..-..++
T Consensus 64 lyDTaGlq~~---~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~ 140 (198)
T KOG3883|consen 64 LYDTAGLQGG---QQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDV 140 (198)
T ss_pred EeecccccCc---hhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHH
Confidence 9999998422 3566778889999999999999887777766665 34332 25899999999997442111111
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
... +...+.+..+.|++..
T Consensus 141 A~~-------Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 141 AQI-------WAKREKVKLWEVTAMD 159 (198)
T ss_pred HHH-------HHhhhheeEEEEEecc
Confidence 111 2222457788888865
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-07 Score=91.97 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=29.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP 396 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~ 396 (921)
....|+|+|.+|+|||||||+|++.+..+++..|
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~ 134 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP 134 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC
Confidence 4578999999999999999999998877666555
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=94.10 Aligned_cols=57 Identities=32% Similarity=0.482 Sum_probs=43.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+|+|.+|+|||||||+|+|.+..+++..| +|.....+... .++.++
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---------------------------~~~~l~ 167 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---------------------------KKVKLL 167 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---------------------------CCEEEE
Confidence 45689999999999999999999999877766554 44443333221 248999
Q ss_pred eCCCC
Q 002437 441 DTPGT 445 (921)
Q Consensus 441 DTPG~ 445 (921)
||||+
T Consensus 168 DtPGi 172 (172)
T cd04178 168 DSPGI 172 (172)
T ss_pred ECcCC
Confidence 99995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=92.57 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=101.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccc--hhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE--EQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..+.+|+-+|....|||||..|++.--... .......|...+.. +..+........+... ...+.+.-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~-------g~A~~~kydeID~APEEkaRGITIn~aHveYe---Ta~RhYaH 121 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEK-------GGAKFKKYDEIDKAPEEKARGITINAAHVEYE---TAKRHYAH 121 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhc-------cccccccHhhhhcChhhhhccceEeeeeeeee---cccccccc
Confidence 356789999999999999999987311000 00001111111111 1111111111111100 01145778
Q ss_pred EeCCCCChhhhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFV---PRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
+|+||.. ..+++.+ ..-|..|+|+.+.++...+.++.|-..++.+ +.+++.+||.|.+++++.++-+.-
T Consensus 122 ~DCPGHA-------DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEm 194 (449)
T KOG0460|consen 122 TDCPGHA-------DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEM 194 (449)
T ss_pred CCCCchH-------HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHH
Confidence 9999953 3455555 5669999999999888888888777777766 568889999999977555554444
Q ss_pred HHHHHHHHhhCC--CCCeEEEecccchHHhh
Q 002437 516 FVKENTMKLLNI--ENVTIYPVSARSTLEAK 544 (921)
Q Consensus 516 ~~~~~~~~~~~~--~~~~v~~vSA~~~l~a~ 544 (921)
.+++.+..+ +. ...||+.-||..++..+
T Consensus 195 E~RElLse~-gf~Gd~~PvI~GSAL~ALeg~ 224 (449)
T KOG0460|consen 195 EIRELLSEF-GFDGDNTPVIRGSALCALEGR 224 (449)
T ss_pred HHHHHHHHc-CCCCCCCCeeecchhhhhcCC
Confidence 455444443 43 56899999999987664
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-07 Score=93.44 Aligned_cols=167 Identities=19% Similarity=0.254 Sum_probs=89.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccC---Cccchhh----cccccCCCeEEeecCCC--
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSD---LASEEQQ----RCERHPDGQYICYLPSP-- 432 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~---~~~~~~~----~~~~~~~g~~~~~~p~~-- 432 (921)
..++.|+|+|..|+|||||++.++..... +. .+.++.... .+..... ......+|++.+ ....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~--~~-----~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~-~~~~~~ 91 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD--EV-----KIAVIEGDVITKFDAERLRKYGAPAIQINTGKECH-LDAHMV 91 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc--CC-----eEEEEECCCCCcccHHHHHHcCCcEEEEcCCCccc-CChHHH
Confidence 36899999999999999999999864110 00 000000000 0000000 011122222111 0000
Q ss_pred ---------cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 433 ---------ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 433 ---------~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
.-.+++||+|.|.-.. +. .+-...+..+.|+|+.+..... .........+.++|+||+|+
T Consensus 92 ~~~l~~~~~~~~d~IiIEt~G~l~~-~~------~~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl 160 (207)
T TIGR00073 92 AHALEDLPLDDIDLLFIENVGNLVC-PA------DFDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADL 160 (207)
T ss_pred HHHHHHhccCCCCEEEEecCCCcCC-Cc------ccccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHc
Confidence 0126899999992111 11 1112356667888887543221 12222345688999999999
Q ss_pred CCCh-HHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 504 YQNA-FELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 504 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.... .+..++.+.++ +.. +..+++++||+++ .|++++.+++.+.
T Consensus 161 ~~~~~~~~~~~~~~l~----~~~--~~~~i~~~Sa~~g---------------------------~gv~~l~~~i~~~ 205 (207)
T TIGR00073 161 AEAVGFDVEKMKADAK----KIN--PEAEIILMSLKTG---------------------------EGLDEWLEFLEGQ 205 (207)
T ss_pred cccchhhHHHHHHHHH----HhC--CCCCEEEEECCCC---------------------------CCHHHHHHHHHHh
Confidence 7532 22334433333 221 3478999999987 6888888877654
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=80.37 Aligned_cols=144 Identities=25% Similarity=0.363 Sum_probs=94.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..|+-.++|..|+|||.|+..++..++.. .-|.|-.+ +++.. . ....|+-+ .+.+|||
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfma--dcphtigv---efgtr-------i-ievsgqki---------klqiwdt 67 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGV---EFGTR-------I-IEVSGQKI---------KLQIWDT 67 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhh--cCCcccce---eccee-------E-EEecCcEE---------EEEEeec
Confidence 35788899999999999999999887652 12222111 11110 0 11122211 4899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcC---CeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQWK---KKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~---~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
.|. +++..+++.|.+.+-..++|+|..+..+-..+. ||...+... .-+|++.||.|+....+ ..++...+.
T Consensus 68 agq----erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~fa 143 (215)
T KOG0097|consen 68 AGQ----ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFA 143 (215)
T ss_pred ccH----HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHH
Confidence 997 788899999999999999999998766655553 444444433 34778889999875421 134444433
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+ ....+...||++|
T Consensus 144 ee--------ngl~fle~saktg 158 (215)
T KOG0097|consen 144 EE--------NGLMFLEASAKTG 158 (215)
T ss_pred hh--------cCeEEEEeccccc
Confidence 32 3566788899987
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-07 Score=86.08 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=98.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
-.|+|+++|+.-+|||||+=.....++--... +|-...+ ..+.....+.+ -++.||||
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl--sTlQASF----------~~kk~n~ed~r----------a~L~IWDT 69 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHL--STLQASF----------QNKKVNVEDCR----------ADLHIWDT 69 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhH--HHHHHHH----------hhcccccccce----------eeeeeeec
Confidence 35899999999999999998887665431110 1110000 00111111111 25899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
.|. +++..+-.-|++.+|.+|+|+|..+..+.+.. .|...++. ....+++|.||+|+... ..+..+-.
T Consensus 70 AGQ----ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R~Vt~qeA 141 (218)
T KOG0088|consen 70 AGQ----ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----RQVTRQEA 141 (218)
T ss_pred cch----HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----hhhhHHHH
Confidence 997 55556666788999999999999876554443 35555554 34578999999998632 12222111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
....+. .....+.+||+.. .|+.+|...+.....+
T Consensus 142 e~YAes---vGA~y~eTSAk~N---------------------------~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 142 EAYAES---VGALYMETSAKDN---------------------------VGISELFESLTAKMIE 176 (218)
T ss_pred HHHHHh---hchhheecccccc---------------------------cCHHHHHHHHHHHHHH
Confidence 111222 2356788898774 6888777777655443
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.7e-07 Score=96.91 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=83.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHH--CCCCCCCCCCCccceeEEEEccCCccchh--hcccccCCCeEEeecCCCcccccEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALL--GKRYLKDGVVPTTNEITFLRFSDLASEEQ--QRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLl--g~~~~~~~~~~tT~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..+.+|+-+|.||||||...|+ |.-+...|.... -....+...+.... ++...... -++..+.. -.-++|
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~---rk~~~~a~SDWM~iEkqRGISVts--SVMqF~Y~-~~~iNL 85 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKG---RKSGKHAKSDWMEIEKQRGISVTS--SVMQFDYA-DCLVNL 85 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeee---ccCCcccccHHHHHHHhcCceEEe--eEEEeccC-CeEEec
Confidence 4689999999999999999876 333222111100 00000111111111 11111110 11111110 023899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+||||..+.. +-|.+.+.-+|..|.|+|+..+...+.+.+++-++-.+.|||-.+||+|....
T Consensus 86 LDTPGHeDFS----EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 86 LDTPGHEDFS----EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred cCCCCccccc----hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 9999985544 33666777799999999999999999999999999999999999999998754
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=88.46 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=72.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FEL 510 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~ 510 (921)
.+.||||||. ++...+...+++.||++|+|+|.+++.+..+. .++..+.. ...|+++|.||+|+.... -..
T Consensus 30 ~l~iwDt~G~----e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~ 105 (176)
T PTZ00099 30 RLQLWDTAGQ----ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTY 105 (176)
T ss_pred EEEEEECCCh----HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCH
Confidence 4899999997 34556677889999999999999986554443 35554432 346889999999986321 111
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
++.... .. . ....++.+||+++ .|+.++.+.|.+.+.
T Consensus 106 ~e~~~~----~~-~---~~~~~~e~SAk~g---------------------------~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 106 EEGMQK----AQ-E---YNTMFHETSAKAG---------------------------HNIKVLFKKIAAKLP 142 (176)
T ss_pred HHHHHH----HH-H---cCCEEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 222111 11 1 1356889999987 577777777766554
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.5e-06 Score=88.56 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=70.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC--CCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK--RYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~--~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+...|+|+|++++|||||+|.|+|. .+.. .+..+||..+......... ..+ ..+++
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~----------~~~-----------~~v~~ 64 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL----------GKE-----------HAVLL 64 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC----------CCc-----------ceEEE
Confidence 3457999999999999999999998 3322 1234677655443222110 000 25899
Q ss_pred EeCCCCChhhhH--HHHHHHHhcC--CCCEEEEEEeCCCCCCHHHHHHHHHh----------------hhcCCeEEEEEe
Q 002437 440 VDTPGTNVILQR--QQRLTEEFVP--RADLVLFVISADRPLTESEVVFLRYT----------------QQWKKKVVFVLN 499 (921)
Q Consensus 440 vDTPG~~~~~~~--~~~~~~~~l~--~aD~il~V~da~~~~t~~e~~~l~~l----------------~~~~~~vivVlN 499 (921)
+||||+++.... ......-.+. -+|++||.++... ...+.+.+..+ ....+.+++|+.
T Consensus 65 lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvR 142 (224)
T cd01851 65 LDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI--LGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVR 142 (224)
T ss_pred EecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc--cHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEe
Confidence 999999865331 2222222233 4899999998763 33443322211 112346778887
Q ss_pred CCCCC
Q 002437 500 KSDLY 504 (921)
Q Consensus 500 K~D~~ 504 (921)
-++..
T Consensus 143 D~~~~ 147 (224)
T cd01851 143 DFSLD 147 (224)
T ss_pred cCcCC
Confidence 76654
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=99.52 Aligned_cols=145 Identities=23% Similarity=0.255 Sum_probs=93.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
...+|+++|..|+||||||-+|+.+++.+ .+.+.-..+++ ... ..++. -...+|||
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~-~VP~rl~~i~I-Pad-----------vtPe~-----------vpt~ivD~ 63 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVD-AVPRRLPRILI-PAD-----------VTPEN-----------VPTSIVDT 63 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccc-cccccCCcccc-CCc-----------cCcCc-----------CceEEEec
Confidence 45799999999999999999999988643 22221111111 000 00111 13789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh-----cCCeEEEEEeCCCCCCChHH-HHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ-----WKKKVVFVLNKSDLYQNAFE-LEEAI 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~-----~~~~vivVlNK~D~~~~~~~-~~~v~ 514 (921)
+-- ++......+.+++||+|++|.+.+++.|-.-. .||-.+++ .+.|+|+|.||+|....... .+...
T Consensus 64 ss~----~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~ 139 (625)
T KOG1707|consen 64 SSD----SDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNT 139 (625)
T ss_pred ccc----cchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHH
Confidence 842 33345567788999999999999886655544 47777765 44799999999999865322 22223
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.-+...+.+. ..++.+||++-
T Consensus 140 ~pim~~f~Ei-----EtciecSA~~~ 160 (625)
T KOG1707|consen 140 LPIMIAFAEI-----ETCIECSALTL 160 (625)
T ss_pred HHHHHHhHHH-----HHHHhhhhhhh
Confidence 3334333332 45778888765
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-07 Score=86.68 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=73.5
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcC---CeEEEEEeCCCCCCChHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQWK---KKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~---~~vivVlNK~D~~~~~~~~~ 511 (921)
.+.+|||.|. +++..++..|.++||++++++|..+..+..+.+ ||.+|.+.. ..+.++.||+|+... .
T Consensus 48 klqiwdtagq----erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e----r 119 (192)
T KOG0083|consen 48 KLQIWDTAGQ----ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE----R 119 (192)
T ss_pred EEEEeeccch----HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh----h
Confidence 4899999997 788899999999999999999999888777664 788887654 467899999998643 1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhh
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAK 544 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~ 544 (921)
.+...-.+.+.+.+ ..|+...||++|++..
T Consensus 120 ~v~~ddg~kla~~y---~ipfmetsaktg~nvd 149 (192)
T KOG0083|consen 120 AVKRDDGEKLAEAY---GIPFMETSAKTGFNVD 149 (192)
T ss_pred ccccchHHHHHHHH---CCCceeccccccccHh
Confidence 11111223333334 4789999999997643
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-07 Score=85.87 Aligned_cols=118 Identities=23% Similarity=0.277 Sum_probs=77.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++++|+|..++||||+|...+..-+. .+...|.. +.+ .++.......- -.+.+|||
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifT-kdykktIg----vdf-------lerqi~v~~Ed----------vr~mlWdt 76 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFT-KDYKKTIG----VDF-------LERQIKVLIED----------VRSMLWDT 76 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccc-cccccccc----hhh-------hhHHHHhhHHH----------HHHHHHHh
Confidence 4689999999999999999998843221 11111110 000 00000000000 02679999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhhh--cCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQQ--WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~~--~~~~vivVlNK~D~~~~ 506 (921)
.|. ++++.++..|++.|.+.++|++..+..+.+- .++-+.+.. ...|.++|-||+|++.+
T Consensus 77 agq----eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 77 AGQ----EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred ccc----hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 997 7888999999999999999999886554443 234444443 34799999999999865
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.5e-07 Score=83.22 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=91.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCC-----CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLK-----DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~-----~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+....|.+|+|||||+-..+..++-+ +|+...... +-|...+.. ....|+-+ .+.||
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKr---vvY~s~gp~------g~gr~~ri---------hLQlW 72 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKR---VVYNSSGPG------GGGRGQRI---------HLQLW 72 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccce---EEEeccCCC------CCCcceEE---------EEeee
Confidence 45678999999999987777655432 111111111 111111100 00011111 37899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc----CCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW----KKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~----~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||.|. +++..++..+.++|-.+++++|..+..+.-+. .|+.+++.+ ++.++++.||+|+... ..+.+
T Consensus 73 DTAGQ----ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~----R~Vs~ 144 (219)
T KOG0081|consen 73 DTAGQ----ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ----RVVSE 144 (219)
T ss_pred ccccH----HHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh----hhhhH
Confidence 99997 78889999999999999999998865544443 477777643 3568899999998743 22222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.-...+.+.+ ..|+|..||-++
T Consensus 145 ~qa~~La~ky---glPYfETSA~tg 166 (219)
T KOG0081|consen 145 DQAAALADKY---GLPYFETSACTG 166 (219)
T ss_pred HHHHHHHHHh---CCCeeeeccccC
Confidence 2222333333 488999999887
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.1e-06 Score=87.58 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=106.4
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc------Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD------RA-LFLIAERVDIAAAVNASGVLLSDQGLPA 171 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~------~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~ 171 (921)
++....++.+.++|++.+-+--.+-. ..+..+.+++.... |+ .++=-+..+.|.+.||+=+-=+.-+ .
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~~~~~---a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~--~ 99 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTYTNPF---ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFN--R 99 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCcc---HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCC--H
Confidence 47788899999999999888554333 34445555443310 22 3444567888888998755533322 2
Q ss_pred HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCC-CCEEEEcCCCccCh
Q 002437 172 IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVK-IPIFIMNASPLVDV 249 (921)
Q Consensus 172 ~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~-~Pv~aiGGi~~~~~ 249 (921)
...+.... .+ + .+---|||+.|+.+| .+.|+||+.+=|. ...|+. .+.+....+ +|++++|||+++|+
T Consensus 100 ~v~~~~~~---~~--i--~~iPG~~T~~E~~~A-~~~Gad~vklFPa--~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~ 169 (213)
T PRK06552 100 ETAKICNL---YQ--I--PYLPGCMTVTEIVTA-LEAGSEIVKLFPG--STLGPSFIKAIKGPLPQVNVMVTGGVNLDNV 169 (213)
T ss_pred HHHHHHHH---cC--C--CEECCcCCHHHHHHH-HHcCCCEEEECCc--ccCCHHHHHHHhhhCCCCEEEEECCCCHHHH
Confidence 22222211 12 1 111236899999999 8999999999664 234555 577777776 99999999999999
Q ss_pred HHHHHcCCcEEEEeeccccc
Q 002437 250 SKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.+++|+.+++++++.+..
T Consensus 170 ~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 170 KDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred HHHHHCCCcEEEEchHHhCc
Confidence 99999999999988877543
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=88.32 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=101.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHH-HHHHHHhhc-CceEEec----CcHH-------HHHhCCCCeEEcCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAA-CLLKSVVKD-RALFLIA----ERVD-------IAAAVNASGVLLSD 166 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a-~~l~~~~~~-~~~~ivn----d~~d-------la~~~~a~GvHL~~ 166 (921)
...+.++.+.++|+.+|+++.+..+........ +.+..+++. +.+++++ +..+ .+...|+|+||+..
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 566888888899999999999766544332211 224444444 5565554 4343 67788999999988
Q ss_pred CCCC--------HHHHHHhcccCCCCccccCeEEEecCCHHHHHc--ccccCCCCEEEeCCC--CCC--CCCc---c-hh
Q 002437 167 QGLP--------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFN--ASSSEGADFLVCCFG--EGQ--KADV---I-EN 228 (921)
Q Consensus 167 ~~l~--------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~--A~~~~gaDyv~~gpv--Tk~--~~g~---~-~~ 228 (921)
.... ....|+.. ++ . .++..+|...+... + ...|+||+.+++. +.. .... . ..
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~----~~-~---~v~~~~~~~~~~~~~~~-~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (200)
T cd04722 93 AVGYLAREDLELIRELREAV----PD-V---KVVVKLSPTGELAAAAA-EEAGVDEVGLGNGGGGGGGRDAVPIADLLLI 163 (200)
T ss_pred cCCcHHHHHHHHHHHHHHhc----CC-c---eEEEEECCCCccchhhH-HHcCCCEEEEcCCcCCCCCccCchhHHHHHH
Confidence 8752 22334433 23 2 46666665443322 3 4679999999987 211 1111 1 23
Q ss_pred hhhhcCCCCEEEEcCCCc-cChHHHHHcCCcEEEEe
Q 002437 229 SLFTNVKIPIFIMNASPL-VDVSKFLKSGASGFVIS 263 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi~~-~~~~~~~~~Ga~gva~~ 263 (921)
.+....++||++.|||+. +++.++.++||++|.+.
T Consensus 164 ~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 164 LAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred HHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 445667899999999988 99999999999999753
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.8e-07 Score=101.95 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=72.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCC-----CC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRY-----LK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~-----~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
...++|+|.+|+|||||||+|++... .. +....||..+..+.. ..++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---------------------------~~~~ 206 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---------------------------DDGH 206 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---------------------------CCCC
Confidence 36899999999999999999998643 12 222334444333221 1257
Q ss_pred EEEeCCCCChhhhHHHHH----HHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 438 IIVDTPGTNVILQRQQRL----TEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~----~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
.++||||+.....-..-+ ..... .....+.|.++..+.+....+..+..+......+.+.+++.+.... -..+
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~-t~~~ 285 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHR-TKLE 285 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEe-echh
Confidence 899999995321111111 11111 3456788888877665544444344444444556677777665543 2223
Q ss_pred HHHHHHHHH
Q 002437 512 EAISFVKEN 520 (921)
Q Consensus 512 ~v~~~~~~~ 520 (921)
...+.+.+.
T Consensus 286 ~a~~~~~~~ 294 (360)
T TIGR03597 286 NADELYNKH 294 (360)
T ss_pred hhHHHHHhh
Confidence 344444443
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=79.38 Aligned_cols=116 Identities=19% Similarity=0.299 Sum_probs=79.4
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+...+|..+|-.|+|||||+..|.+.+. ....||.. +...... .+|.+ .++++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~--~hltpT~G-Fn~k~v~-------------~~g~f----------~Lnvw 67 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP--RHLTPTNG-FNTKKVE-------------YDGTF----------HLNVW 67 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh--hhccccCC-cceEEEe-------------ecCcE----------EEEEE
Confidence 34678999999999999999999999873 34444432 2221111 12211 48999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-----HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-----VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-----~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
|..|.-++ .-.+.+|+.+.|.+|||+|..+.-..++. ++++..+-...|+.+..||-|++-.
T Consensus 68 DiGGqr~I----RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 68 DIGGQRGI----RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ecCCcccc----chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 99997544 34688999999999999996643222222 2344444566899999999998744
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-06 Score=81.00 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=76.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
...-+++|+|--|||||||++.|-.++...- -.-||+....+. . -.++-
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig-------------------~----------m~ftt 68 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIG-------------------G----------MTFTT 68 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheec-------------------C----------ceEEE
Confidence 3556899999999999999999987764321 112333332221 1 13788
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH----HHHHHHh-hhcCCeEEEEEeCCCCCCC
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE----VVFLRYT-QQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e----~~~l~~l-~~~~~~vivVlNK~D~~~~ 506 (921)
+|.-|. ......+.+|+..+|.|+|.+|+-+.....+ .+.+-.+ .-...|+++..||+|....
T Consensus 69 ~DLGGH----~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 69 FDLGGH----LQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred EccccH----HHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 999995 4556789999999999999999975432222 2222222 2356899999999999765
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=94.89 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=67.4
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhh-----cCCCCEEEEcCC
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFT-----NVKIPIFIMNAS 244 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~-----~~~~Pv~aiGGi 244 (921)
+..+|...+ +. + .|+++|||++|+.+| ...|||||.|++. +++ .+++.+ .-++|+.|+|||
T Consensus 186 v~~~r~~~~---~~-~---~I~VEv~tleea~eA-~~~GaD~I~LDn~-----~~e~l~~av~~~~~~~~~i~leAsGGI 252 (288)
T PRK07428 186 ITRIRQRIP---YP-L---TIEVETETLEQVQEA-LEYGADIIMLDNM-----PVDLMQQAVQLIRQQNPRVKIEASGNI 252 (288)
T ss_pred HHHHHHhCC---CC-C---EEEEECCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 456677663 34 2 699999999999999 8999999999976 222 222222 347899999999
Q ss_pred CccChHHHHHcCCcEEEEeeccccc
Q 002437 245 PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 245 ~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|++|+.++.++|+++|++++.....
T Consensus 253 t~~ni~~ya~tGvD~Isvgsl~~sa 277 (288)
T PRK07428 253 TLETIRAVAETGVDYISSSAPITRS 277 (288)
T ss_pred CHHHHHHHHHcCCCEEEEchhhhCC
Confidence 9999999999999999887765543
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=90.57 Aligned_cols=144 Identities=23% Similarity=0.319 Sum_probs=91.9
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC---------------CccceeEEEEccCCccchhhcccccCCCe
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV---------------PTTNEITFLRFSDLASEEQQRCERHPDGQ 424 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~---------------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~ 424 (921)
..+....|++.|+.++|||||+-+|.-.+.- .+.. .-|..++.--|+ +.+|.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~D-DG~G~tR~~ldv~kHEverGlsa~iS~~v~G------------f~dgk 179 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLD-DGDGATRSYLDVQKHEVERGLSADISLRVYG------------FDDGK 179 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCC-CCCcchhhhhhhhhHHHhhccccceeEEEEE------------ecCCc
Confidence 3456789999999999999999988632211 0111 112333322222 12222
Q ss_pred EEeecCCCc------------ccccEEEeCCCCChhhhHHHHHHHH-hc-CCCCEEEEEEeCCCCCCHHHHHHHHHhhhc
Q 002437 425 YICYLPSPI------------LKEMIIVDTPGTNVILQRQQRLTEE-FV-PRADLVLFVISADRPLTESEVVFLRYTQQW 490 (921)
Q Consensus 425 ~~~~~p~~~------------l~~l~lvDTPG~~~~~~~~~~~~~~-~l-~~aD~il~V~da~~~~t~~e~~~l~~l~~~ 490 (921)
+. .+.+|+ -+-+.||||-|. +.+-..+.+ .+ ++.|..++|+.++++.+...++.|-.+...
T Consensus 180 ~~-rlknPld~aE~~~vv~~aDklVsfVDtvGH----EpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~ 254 (527)
T COG5258 180 VV-RLKNPLDEAEKAAVVKRADKLVSFVDTVGH----EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAM 254 (527)
T ss_pred eE-eecCcccHHHHhHhhhhcccEEEEEecCCc----cHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhh
Confidence 21 111111 022789999996 333333333 33 789999999999999988888888888888
Q ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 491 KKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
..|+|+|++|+|..++ +.+..+.+.+...++
T Consensus 255 ~lPviVvvTK~D~~~d-dr~~~v~~ei~~~Lk 285 (527)
T COG5258 255 ELPVIVVVTKIDMVPD-DRFQGVVEEISALLK 285 (527)
T ss_pred cCCEEEEEEecccCcH-HHHHHHHHHHHHHHH
Confidence 9999999999999965 455555555544443
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=88.12 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=63.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC-hHHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN-AFELEEAI 514 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~-~~~~~~v~ 514 (921)
+.++|+|.|.. ..... ... -+|.+|.|+|+.+....... .- .+....-++|+||+|+.+. ..+++.+.
T Consensus 93 D~iiIEt~G~~-l~~~~----~~~--l~~~~i~vvD~~~~~~~~~~-~~---~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 93 EMVFIESGGDN-LSATF----SPE--LADLTIFVIDVAAGDKIPRK-GG---PGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CEEEEECCCCC-ccccc----chh--hhCcEEEEEEcchhhhhhhh-hH---hHhhhccEEEEEhhhccccccccHHHHH
Confidence 68899999953 11111 111 26889999999864432211 01 1122234889999999842 22334333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.++ .+ . ...++|++||+++ .|++++.+++.+.+.
T Consensus 162 ~~~~----~~-~-~~~~i~~~Sa~~g---------------------------~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAK----KM-R-GEKPFIFTNLKTK---------------------------EGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHH----Hh-C-CCCCEEEEECCCC---------------------------CCHHHHHHHHHhhcC
Confidence 3333 32 2 3588999999998 799999998886643
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.9e-06 Score=76.13 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=73.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC--CHHHHHHHHHhhh---cCCeEEEEEeCCCCCCChHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL--TESEVVFLRYTQQ---WKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~--t~~e~~~l~~l~~---~~~~vivVlNK~D~~~~~~~~ 510 (921)
.+.++|.-|..+..+ .++.|..+.|.+|||+|.++.. +-+-.++...+.+ .+..++++.||.|.......-
T Consensus 63 k~~vwdLggqtSirP----yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~ 138 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRP----YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRS 138 (182)
T ss_pred cceeeEccCcccccH----HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHH
Confidence 378999999876544 5888999999999999988643 3333334443432 447888999999987542221
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.....-...++ .....||..||..+ .|++...+++.+-+.
T Consensus 139 E~~~~L~l~~Lk----~r~~~Iv~tSA~kg---------------------------~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 139 EVLKMLGLQKLK----DRIWQIVKTSAVKG---------------------------EGLDPAMDWLQRPLK 179 (182)
T ss_pred HHHHHhChHHHh----hheeEEEeeccccc---------------------------cCCcHHHHHHHHHHh
Confidence 111111112222 23478999999876 688888888877665
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-06 Score=88.58 Aligned_cols=26 Identities=46% Similarity=0.485 Sum_probs=23.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
...++++|.+|+|||||||+|++...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 46799999999999999999998654
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-05 Score=81.71 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=100.3
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEe----cC----cHHHHHhCCCCeEEcCCCCCC
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLI----AE----RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~iv----nd----~~dla~~~~a~GvHL~~~~l~ 170 (921)
++..+.++.+.++ ++++-+--+-.. ..=.+..+.+++... +.++++ ++ ..+.+.+.|+|++++.....+
T Consensus 13 ~~~~~~~~~l~~~-i~~ieig~~~~~-~~g~~~i~~i~~~~~-~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~ 89 (202)
T cd04726 13 EEALELAKKVPDG-VDIIEAGTPLIK-SEGMEAVRALREAFP-DKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPL 89 (202)
T ss_pred HHHHHHHHHhhhc-CCEEEcCCHHHH-HhCHHHHHHHHHHCC-CCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCH
Confidence 3556666666556 888777111100 000233444444321 344444 32 246677899999987554432
Q ss_pred ---HHHHHHhcccCCCCccccCeEE---EecCCHHHHHcccccCCCCEEEeCCC----CCC-CCCcc-hhhhhhcCCCCE
Q 002437 171 ---AIVARNTMKDSMSESVVLPLVG---RNVQTLDAAFNASSSEGADFLVCCFG----EGQ-KADVI-ENSLFTNVKIPI 238 (921)
Q Consensus 171 ---~~~~r~~~~~~~~~~~~~~~ig---~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~-~~g~~-~~~~~~~~~~Pv 238 (921)
....+.... .+ . .++ .++++..++.++ ...|+||+.++|. ++. ..+.. .+.+.+..++|+
T Consensus 90 ~~~~~~i~~~~~---~g-~---~~~v~~~~~~t~~e~~~~-~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i 161 (202)
T cd04726 90 STIKKAVKAAKK---YG-K---EVQVDLIGVEDPEKRAKL-LKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKV 161 (202)
T ss_pred HHHHHHHHHHHH---cC-C---eEEEEEeCCCCHHHHHHH-HHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCE
Confidence 111222110 12 2 234 588899998887 7889999999986 221 22233 355555568999
Q ss_pred EEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 239 FIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 239 ~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.|||+++|+.++.++||+++++.++.++.
T Consensus 162 ~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~ 192 (202)
T cd04726 162 AVAGGITPDTLPEFKKAGADIVIVGRAITGA 192 (202)
T ss_pred EEECCcCHHHHHHHHhcCCCEEEEeehhcCC
Confidence 9999999999999999999999999988653
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.8e-07 Score=87.26 Aligned_cols=27 Identities=44% Similarity=0.492 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLK 391 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~ 391 (921)
.+++|+|.+|+|||||||+|++.....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~ 62 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQK 62 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS---
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchh
Confidence 689999999999999999999985544
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.6e-06 Score=88.96 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=40.0
Q ss_pred CCeEEEEEeCCCCCCC-hHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccc
Q 002437 491 KKKVVFVLNKSDLYQN-AFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINT 569 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg 569 (921)
...-++|+||+|+.+. ..+++...+.++. +. +..+|+++||+++ .|
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~----ln--p~a~I~~vSA~tG---------------------------eG 276 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE----VN--PEIEIILISATSG---------------------------EG 276 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh----hC--CCCcEEEEECCCC---------------------------CC
Confidence 4567899999999853 2345555444433 22 3578999999987 68
Q ss_pred hHHHHHHHHH
Q 002437 570 FDKLEKLLYS 579 (921)
Q Consensus 570 ~~~L~~~l~~ 579 (921)
++.|.++|.+
T Consensus 277 ld~L~~~L~~ 286 (290)
T PRK10463 277 MDQWLNWLET 286 (290)
T ss_pred HHHHHHHHHH
Confidence 8888888865
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.7e-06 Score=84.20 Aligned_cols=57 Identities=39% Similarity=0.499 Sum_probs=42.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....+++++|.+|+|||||+|+|++....+.+. .+||.....+... ..+.++
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~li 150 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---------------------------NKIKLL 150 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---------------------------CCEEEE
Confidence 356889999999999999999999987655444 4566554443321 248999
Q ss_pred eCCCC
Q 002437 441 DTPGT 445 (921)
Q Consensus 441 DTPG~ 445 (921)
||||+
T Consensus 151 DtPG~ 155 (155)
T cd01849 151 DTPGI 155 (155)
T ss_pred ECCCC
Confidence 99995
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-05 Score=82.88 Aligned_cols=153 Identities=20% Similarity=0.150 Sum_probs=99.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCce-------------EEecC---cHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRAL-------------FLIAE---RVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~-------------~ivnd---~~dla~~~~a~GvH 163 (921)
...+.+..+..+|+..+-+.. .+..+.+++.. ..+ +++.. .++.|.+.|+|-|-
T Consensus 24 ~~~~~a~a~~~~G~~~~~~~~--------~~~i~~i~~~~--~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~ 93 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRANG--------VEDIKAIRAVV--DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIA 93 (221)
T ss_pred HHHHHHHHHHHCCCeEEEcCC--------HHHHHHHHHhC--CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEE
Confidence 455666667789988888732 23334444422 223 33322 47788889999554
Q ss_pred cCCCC------CCH-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCC-----CCCcc-hh
Q 002437 164 LSDQG------LPA-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQ-----KADVI-EN 228 (921)
Q Consensus 164 L~~~~------l~~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~-----~~g~~-~~ 228 (921)
+.... ... ...+.... . ++ . .+...+|+.+++..+ ...|+||+.+++. |.. ..+.. ..
T Consensus 94 ~d~~~~~~p~~~~~~~~i~~~~~-~-~~-i---~vi~~v~t~ee~~~a-~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~ 166 (221)
T PRK01130 94 LDATLRPRPDGETLAELVKRIKE-Y-PG-Q---LLMADCSTLEEGLAA-QKLGFDFIGTTLSGYTEETKKPEEPDFALLK 166 (221)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHh-C-CC-C---eEEEeCCCHHHHHHH-HHcCCCEEEcCCceeecCCCCCCCcCHHHHH
Confidence 42221 111 11222210 0 12 2 467889999999999 8999999988654 221 12232 46
Q ss_pred hhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 229 SLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+++.+++||++.||| +++++.++.++||+||++.++.++.
T Consensus 167 ~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 167 ELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred HHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 7777789999999999 6999999999999999998887764
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.3e-06 Score=91.44 Aligned_cols=58 Identities=34% Similarity=0.557 Sum_probs=43.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+|+|.+|+|||||||+|++.+...++..| +|.....+... ..+.|+
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---------------------------~~~~l~ 171 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---------------------------KGLELL 171 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---------------------------CcEEEE
Confidence 35689999999999999999999999876655544 45444333221 248999
Q ss_pred eCCCCC
Q 002437 441 DTPGTN 446 (921)
Q Consensus 441 DTPG~~ 446 (921)
||||+.
T Consensus 172 DtPGi~ 177 (287)
T PRK09563 172 DTPGIL 177 (287)
T ss_pred ECCCcC
Confidence 999984
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-06 Score=83.46 Aligned_cols=29 Identities=45% Similarity=0.574 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV 394 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~ 394 (921)
+++|+|.+|+|||||+|+|++......+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~ 113 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA 113 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC
Confidence 89999999999999999999987654333
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-06 Score=90.17 Aligned_cols=58 Identities=38% Similarity=0.588 Sum_probs=43.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....+++|+|.+|+|||||||+|.+.+...++..| +|.....+..+ ..+.|+
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---------------------------~~~~l~ 168 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS---------------------------DGLELL 168 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC---------------------------CCEEEE
Confidence 35688999999999999999999998876665554 44443333221 248999
Q ss_pred eCCCCC
Q 002437 441 DTPGTN 446 (921)
Q Consensus 441 DTPG~~ 446 (921)
||||+.
T Consensus 169 DtPG~~ 174 (276)
T TIGR03596 169 DTPGIL 174 (276)
T ss_pred ECCCcc
Confidence 999983
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-06 Score=94.44 Aligned_cols=57 Identities=37% Similarity=0.583 Sum_probs=43.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+++|+|.||+|||||||+|+|.....++..| +|.....+... .++.|+|
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---------------------------~~i~LlD 183 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---------------------------DGIYLLD 183 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---------------------------CCeEEec
Confidence 3478999999999999999999999987766665 44444443322 2589999
Q ss_pred CCCCC
Q 002437 442 TPGTN 446 (921)
Q Consensus 442 TPG~~ 446 (921)
|||+-
T Consensus 184 tPGii 188 (322)
T COG1161 184 TPGII 188 (322)
T ss_pred CCCcC
Confidence 99984
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=92.65 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=85.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
....+.++.+...|||||.+.|+-.+-..+..... .++|-+....+..|......+.+- ++..+ .-++|||+
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlag-----kirfld~redeq~rgitmkss~is-~~~~~--~~~nlids 79 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAG-----KIRFLDTREDEQTRGITMKSSAIS-LLHKD--YLINLIDS 79 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhcc-----ceeeccccchhhhhceeeeccccc-cccCc--eEEEEecC
Confidence 45689999999999999999998654322111111 122333222223333332222211 11111 12899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
||.-++.. .+.....-+|..++++|+..+...+...++++....+..+++|+||+|.
T Consensus 80 pghvdf~s----evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 80 PGHVDFSS----EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred CCccchhh----hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 99855433 3455567799999999999999999999999998889999999999993
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.3e-05 Score=82.29 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=98.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ecC---cHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IAE---RVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vnd---~~dla~~~~a~GvH 163 (921)
...+..+.++++|+..+-. +..+.. +.++..+ ..+++ +.. .++.|.+.|+|.|-
T Consensus 28 ~i~~~a~~~~~~G~~~~~~-----~~~~~~---~~i~~~~--~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~ 97 (219)
T cd04729 28 IMAAMALAAVQGGAVGIRA-----NGVEDI---RAIRARV--DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIA 97 (219)
T ss_pred HHHHHHHHHHHCCCeEEEc-----CCHHHH---HHHHHhC--CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEE
Confidence 4567777888999988654 112222 2333221 23333 211 56788889999776
Q ss_pred cCCCCC------C-H---HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCC-----CCCcc
Q 002437 164 LSDQGL------P-A---IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQ-----KADVI 226 (921)
Q Consensus 164 L~~~~l------~-~---~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~-----~~g~~ 226 (921)
+....+ . . ..++.. + + . .+.+.+|+.+++..+ ...|+||+.+++. |.. .++..
T Consensus 98 ~~~~~~~~p~~~~~~~~i~~~~~~-g----~-~---~iiv~v~t~~ea~~a-~~~G~d~i~~~~~g~t~~~~~~~~~~~~ 167 (219)
T cd04729 98 LDATDRPRPDGETLAELIKRIHEE-Y----N-C---LLMADISTLEEALNA-AKLGFDIIGTTLSGYTEETAKTEDPDFE 167 (219)
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHH-h----C-C---eEEEECCCHHHHHHH-HHcCCCEEEccCccccccccCCCCCCHH
Confidence 632221 1 1 122322 1 1 1 356688999999999 8999999987654 221 12233
Q ss_pred -hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+++..++||++.||| +++++.++.++||+||.+.++.++.
T Consensus 168 ~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 168 LLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 467777779999999999 6899999999999999988887664
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.8e-06 Score=80.24 Aligned_cols=94 Identities=27% Similarity=0.324 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeE
Q 002437 453 QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTI 532 (921)
Q Consensus 453 ~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v 532 (921)
.++.+.++.++|++|+|+|+..+.+..+..+...+...++|+++|+||+|+... +...... .+... ...++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-~~~~~~~-----~~~~~---~~~~~ 73 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-EVLEKWK-----SIKES---EGIPV 73 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-HHHHHHH-----HHHHh---CCCcE
Confidence 456777778899999999998876666656666566668999999999999743 2222111 11111 23579
Q ss_pred EEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 533 YPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 533 ~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+++||+.+ .|+++|.+.+.+++.
T Consensus 74 ~~iSa~~~---------------------------~gi~~L~~~l~~~~~ 96 (156)
T cd01859 74 VYVSAKER---------------------------LGTKILRRTIKELAK 96 (156)
T ss_pred EEEEcccc---------------------------ccHHHHHHHHHHHHh
Confidence 99999886 688888888877654
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.2e-06 Score=83.62 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=95.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..+++|||...+|||+|+...... .+|....||.-+-..... ...+|..+ .+.||||.
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~yvPTVFdnys~~v------------~V~dg~~v---------~L~LwDTA 61 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEYVPTVFDNYSANV------------TVDDGKPV---------ELGLWDTA 61 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCcccccCeEEccceEEE------------EecCCCEE---------EEeeeecC
Confidence 478999999999999999887765 446666665432111100 11123322 48999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhcC--CeEEEEEeCCCCCCChHHHHHHHH----
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQWK--KKVVFVLNKSDLYQNAFELEEAIS---- 515 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~~--~~vivVlNK~D~~~~~~~~~~v~~---- 515 (921)
|..+. ..+..--++.+|++|++++..++.+..+. .++.+++... .|+|+|.+|.|+..+...++....
T Consensus 62 GqedY----DrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~ 137 (198)
T KOG0393|consen 62 GQEDY----DRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLE 137 (198)
T ss_pred CCccc----ccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCC
Confidence 98433 33222245899999999999998877764 4777887755 799999999999855322222211
Q ss_pred ----HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 ----FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ----~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.-...+.+.++ ....+.+||++.
T Consensus 138 ~Vt~~~g~~lA~~ig--a~~y~EcSa~tq 164 (198)
T KOG0393|consen 138 PVTYEQGLELAKEIG--AVKYLECSALTQ 164 (198)
T ss_pred cccHHHHHHHHHHhC--cceeeeehhhhh
Confidence 11122333333 366788888764
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-06 Score=87.82 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=73.3
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhccccc-CCCeEEeecCCCccccc
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERH-PDGQYICYLPSPILKEM 437 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~p~~~l~~l 437 (921)
.+..+.++++|||.||+|||||+|+|+.....+.+...||-++..-+....+......+... +.+.+. -.+
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vp--------a~l 86 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVP--------AFL 86 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceee--------eeE
Confidence 34556789999999999999999999999988888999998776654433332221111111 111111 138
Q ss_pred EEEeCCCCCh---hhhHHHHHHHHhcCCCCEEEEEEeCCC
Q 002437 438 IIVDTPGTNV---ILQRQQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 438 ~lvDTPG~~~---~~~~~~~~~~~~l~~aD~il~V~da~~ 474 (921)
+++|..|+-- ........-.+.++.+|+++.|+++..
T Consensus 87 ~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 87 TVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred EEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 9999999831 122233446667799999999999863
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.9e-06 Score=88.32 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYL 390 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~ 390 (921)
...+++|.+|+|||||||+|.+....
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~ 190 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQ 190 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhh
Confidence 37789999999999999999986433
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.5e-06 Score=91.98 Aligned_cols=102 Identities=17% Similarity=-0.036 Sum_probs=64.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC-CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY-LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++++++|.||+|||||+|+|++... ....+.+||..+........+............... .| ..+.++|.|
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~---~~----a~i~~~Dia 75 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKV---PP----TTTEFVDIA 75 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCc---CC----ceEEEEecc
Confidence 6899999999999999999999987 556667787766553332222110000000000000 00 147999999
Q ss_pred CCChhh---hHHHHHHHHhcCCCCEEEEEEeCC
Q 002437 444 GTNVIL---QRQQRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 444 G~~~~~---~~~~~~~~~~l~~aD~il~V~da~ 473 (921)
|+.... ..........++.+|++++|+++.
T Consensus 76 Glv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 76 GLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 984221 112234666789999999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.5e-05 Score=69.42 Aligned_cols=142 Identities=15% Similarity=0.240 Sum_probs=88.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..+.|+.+|-.++||||++--|.-.. +....||+. .+..+.|... .+.++|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~--~~~~ipTvGFnvetVtykN~--------------------------kfNvwd 67 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ--SVTTIPTVGFNVETVTYKNV--------------------------KFNVWD 67 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC--CcccccccceeEEEEEeeee--------------------------EEeeee
Confidence 35889999999999999998886543 223344443 1222222211 378999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
..|.+ .....++.|....-.+|||+|+.....-++ ++-|+.+ .. ...++++..||-|+... -..+++.+.
T Consensus 68 vGGqd----~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A-~~pqei~d~ 142 (180)
T KOG0071|consen 68 VGGQD----KIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA-MKPQEIQDK 142 (180)
T ss_pred ccCch----hhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc-cCHHHHHHH
Confidence 99974 455679999999999999999875432222 2233333 22 33588889999999754 122333333
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. +.. +....-.+.|.++..+
T Consensus 143 le--Le~-~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 143 LE--LER-IRDRNWYVQPSCALSG 163 (180)
T ss_pred hc--ccc-ccCCccEeeccccccc
Confidence 22 111 2223456778887765
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.2e-06 Score=93.35 Aligned_cols=30 Identities=43% Similarity=0.550 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVV 395 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~ 395 (921)
.++|+|.+|+|||||||+|++...+.++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i 236 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDV 236 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccc
Confidence 478999999999999999999876654433
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-05 Score=77.67 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=51.3
Q ss_pred HHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEE
Q 002437 457 EEFVPRADLVLFVISADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534 (921)
Q Consensus 457 ~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~ 534 (921)
.+.+.++|+|++|+|+..+....+..+.+.+... ++|+++|+||+|+.+. ++.......+ .+.+ ...+++
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~-~~~~~~~~~~----~~~~---~~~~~~ 74 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT-WVTARWVKIL----SKEY---PTIAFH 74 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH-HHHHHHHHHH----hcCC---cEEEEE
Confidence 4567899999999999988766666666666543 4899999999999743 3332222222 2211 223688
Q ss_pred ecccch
Q 002437 535 VSARST 540 (921)
Q Consensus 535 vSA~~~ 540 (921)
+||+.+
T Consensus 75 iSa~~~ 80 (157)
T cd01858 75 ASINNP 80 (157)
T ss_pred eecccc
Confidence 999876
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.1e-05 Score=91.10 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..+.|+|.+|+|||||||+|++.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 57999999999999999999965
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.1e-05 Score=82.05 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=61.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE--EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.-+|+++|.|++|||||+..+++......++.+||-... .+.|.. -++.++|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--------------------------a~IQllD 115 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--------------------------ANIQLLD 115 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--------------------------ceEEEec
Confidence 358999999999999999999998766667777764322 222221 1589999
Q ss_pred CCCCChhhhHH---HHHHHHhcCCCCEEEEEEeCCCCC
Q 002437 442 TPGTNVILQRQ---QRLTEEFVPRADLVLFVISADRPL 476 (921)
Q Consensus 442 TPG~~~~~~~~---~~~~~~~l~~aD~il~V~da~~~~ 476 (921)
.||+-....+. ........+.||+|++|+|+....
T Consensus 116 LPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 116 LPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred CcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 99984322111 222334558899999999998653
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=89.41 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=24.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV 394 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~ 394 (921)
.++|+|.+|+|||||||+|++.....++.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~ 202 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGK 202 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccccc
Confidence 48999999999999999999886655443
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=80.25 Aligned_cols=56 Identities=38% Similarity=0.583 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++++++|.+|+|||||+|+|++......+..+ +|.....+... ..+.++|
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---------------------------~~~~~iD 166 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---------------------------PGIYLLD 166 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---------------------------CCEEEEE
Confidence 4578999999999999999999998765544433 44333333221 2489999
Q ss_pred CCCC
Q 002437 442 TPGT 445 (921)
Q Consensus 442 TPG~ 445 (921)
|||+
T Consensus 167 tpG~ 170 (171)
T cd01856 167 TPGI 170 (171)
T ss_pred CCCC
Confidence 9997
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.3e-05 Score=78.33 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCe
Q 002437 452 QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVT 531 (921)
Q Consensus 452 ~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (921)
....+..++.++|++++|+|+.++.......+.. ...++|+++|+||+|+.......+..............+....+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKD 101 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCccc
Confidence 3567888999999999999998765433333322 23468999999999997543222222222211111111222246
Q ss_pred EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 532 IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 532 v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+|++||+.+ .|+++|.+.+.+.+
T Consensus 102 i~~vSA~~~---------------------------~gi~eL~~~l~~~l 124 (190)
T cd01855 102 VILISAKKG---------------------------WGVEELINAIKKLA 124 (190)
T ss_pred EEEEECCCC---------------------------CCHHHHHHHHHHHh
Confidence 999999886 68888888887754
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.1e-05 Score=86.14 Aligned_cols=29 Identities=34% Similarity=0.298 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG 393 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~ 393 (921)
..++|+|.+|+|||||||+|++.....++
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~ 149 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVN 149 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccc
Confidence 47889999999999999999998655443
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.8e-05 Score=83.21 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCC------ccchhhcccccCCCeEEeecCC-------
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDL------ASEEQQRCERHPDGQYICYLPS------- 431 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~p~------- 431 (921)
.+++|+|...+|||||+-.|+...+-. .........+++... .....+..-....|.++.|...
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDn---G~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDN---GNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccC---CCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 689999999999999999887654321 111111111111110 0000000000011222222221
Q ss_pred -CcccccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 432 -PILKEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 432 -~~l~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
..-+-+++||..|.. ++...+...+ -..|..++|++++.+.+....+.|-.+...+.|+|++++|+|+...
T Consensus 245 e~SSKlvTfiDLAGh~----kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHA----KYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hhhcceEEEeecccch----hhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccc
Confidence 111348999999952 2222222222 3468889999999999888888888888899999999999999965
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.7e-05 Score=78.60 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=87.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..+|.++|.+|+||||+=..+....+... .....|-++ .++.. .--|.+ -+.++|+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidv---eHsh~----------RflGnl----------~LnlwDc 60 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDV---EHSHV----------RFLGNL----------VLNLWDC 60 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCccee---eehhh----------hhhhhh----------eeehhcc
Confidence 45799999999999998776664332210 011112111 11110 001111 2678999
Q ss_pred CCCChhhhHHHHH-HHHhcCCCCEEEEEEeCCCCCCHHHHHH----HHHhhhcC--CeEEEEEeCCCCCCChHHHHHHHH
Q 002437 443 PGTNVILQRQQRL-TEEFVPRADLVLFVISADRPLTESEVVF----LRYTQQWK--KKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~~~~~~-~~~~l~~aD~il~V~da~~~~t~~e~~~----l~~l~~~~--~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.|.....+..... -.......++++||+|++....+.+.+. |+.+.+.. .++++.+.|+|++.. +..+.+..
T Consensus 61 Ggqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~-d~r~~if~ 139 (295)
T KOG3886|consen 61 GGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE-DARELIFQ 139 (295)
T ss_pred CCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc-chHHHHHH
Confidence 9986554444332 2344588999999999997766666654 34444433 479999999999864 33344444
Q ss_pred HHHHHHHHhhCCCCCeEEEecc
Q 002437 516 FVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA 537 (921)
.....+..+.......+|+.|-
T Consensus 140 ~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 140 RRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred HHHHHHHHhcccccccccccch
Confidence 4444444443333455555554
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.7e-05 Score=77.31 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=38.6
Q ss_pred ccEEEeCCCCChhhhHHHHH----HHHhcCCCCEEEEEEeCCCCCCHH--HHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRL----TEEFVPRADLVLFVISADRPLTES--EVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~----~~~~l~~aD~il~V~da~~~~t~~--e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
+..+|||||+.....-.... .....-+.|.+++|+|+.+..... ...+..++.. --++|+||+|+
T Consensus 88 d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~ivlnk~dl 158 (158)
T cd03112 88 DRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRILLNKTDL 158 (158)
T ss_pred CEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEEEecccC
Confidence 57999999996443322221 222345689999999987532211 1112333333 23669999995
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.007 Score=62.99 Aligned_cols=139 Identities=20% Similarity=0.284 Sum_probs=79.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.|.|.-+|++|-||||||+.|++.++-.....++-..+ .......+ ...+.+. -.++++||.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V---~L~~~Tye-------lqEsnvr--------lKLtiv~tv 103 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNV---KLQANTYE-------LQESNVR--------LKLTIVDTV 103 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCc---eeecchhh-------hhhcCee--------EEEEEEeec
Confidence 58999999999999999999999876422222111111 11100000 0001110 148999999
Q ss_pred CCChhh--------------hHHHHHHHHhc-----------CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcCCeEEEE
Q 002437 444 GTNVIL--------------QRQQRLTEEFV-----------PRADLVLFVISAD-RPLTESEVVFLRYTQQWKKKVVFV 497 (921)
Q Consensus 444 G~~~~~--------------~~~~~~~~~~l-----------~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~~~vivV 497 (921)
|+++-. ..++....+.+ .+.++++|.+... +.+..-++-.++.+. .+.++|.|
T Consensus 104 GfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPv 182 (406)
T KOG3859|consen 104 GFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPV 182 (406)
T ss_pred ccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHH
Confidence 996421 11111111111 4678999999876 344444444455543 45789999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 498 LNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 498 lNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
+-|.|... .+++......+...+.
T Consensus 183 IAKaDtis-K~eL~~FK~kimsEL~ 206 (406)
T KOG3859|consen 183 IAKADTIS-KEELKRFKIKIMSELV 206 (406)
T ss_pred HHHhhhhh-HHHHHHHHHHHHHHHH
Confidence 99999984 4666665555554443
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.1e-05 Score=75.12 Aligned_cols=31 Identities=39% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG 393 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~ 393 (921)
...+++++|.+|+||||++|.|.+......+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~ 130 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS 130 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccC
Confidence 4578899999999999999999987654433
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00026 Score=78.29 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=90.5
Q ss_pred HHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCC----------------CCCCC---CccceeEEEEccCCccchhhc
Q 002437 356 DAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYL----------------KDGVV---PTTNEITFLRFSDLASEEQQR 416 (921)
Q Consensus 356 ~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~----------------~~~~~---~tT~~~~~~~~~~~~~~~~~~ 416 (921)
+...+......|+|||+.-+||||||..+...-++ |.+.. -+|..+.++
T Consensus 9 DIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFi------------ 76 (492)
T PF09547_consen 9 DIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFI------------ 76 (492)
T ss_pred HHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCccc------------
Confidence 34456778899999999999999999998643333 22111 122222221
Q ss_pred ccccCCCeEEeecCCCcccccEEEeCCCCC---hh------hhH----------------HHHHHHHhcCCCCEEEEEEe
Q 002437 417 CERHPDGQYICYLPSPILKEMIIVDTPGTN---VI------LQR----------------QQRLTEEFVPRADLVLFVIS 471 (921)
Q Consensus 417 ~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~---~~------~~~----------------~~~~~~~~l~~aD~il~V~d 471 (921)
|+.-+.+.+....--++.+|||-|+- +. .++ ..--|++.+.+-.-|=+|+.
T Consensus 77 ----P~eAv~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVT 152 (492)
T PF09547_consen 77 ----PNEAVEITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVT 152 (492)
T ss_pred ----CCcceEEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEe
Confidence 11112222222222358899998871 00 011 01114445555444545554
Q ss_pred CCCCC--------CHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 472 ADRPL--------TESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 472 a~~~~--------t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
++..+ -+.+.+.+..|+..++|+++++|-.+-.. ++-.+ +...+.+-+ +++|+++++.+
T Consensus 153 TDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s--~et~~----L~~eL~ekY---~vpVlpvnc~~ 219 (492)
T PF09547_consen 153 TDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS--EETQE----LAEELEEKY---DVPVLPVNCEQ 219 (492)
T ss_pred cCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC--HHHHH----HHHHHHHHh---CCcEEEeehHH
Confidence 44323 24455688999999999999999877543 23233 333344434 58999999854
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.8e-05 Score=73.98 Aligned_cols=77 Identities=26% Similarity=0.298 Sum_probs=55.6
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeE
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTI 532 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v 532 (921)
.+.+.+.++|++++|+|+..+.+..+..+.+.+... ++|+++|+||+|+... +......+ .+.. ...++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~-~~~~~~~~----~~~~----~~~~i 74 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE-EQRKAWAE----YFKK----EGIVV 74 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH-HHHHHHHH----HHHh----cCCeE
Confidence 366778999999999999998877766766766655 7899999999999743 22222222 2222 23579
Q ss_pred EEecccch
Q 002437 533 YPVSARST 540 (921)
Q Consensus 533 ~~vSA~~~ 540 (921)
+++||+.+
T Consensus 75 i~iSa~~~ 82 (141)
T cd01857 75 VFFSALKE 82 (141)
T ss_pred EEEEecCC
Confidence 99999876
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.8e-05 Score=79.46 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=83.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC---Cc-----cceeEEEEccCCccc----hhhcccccCCCe--EEee
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV---PT-----TNEITFLRFSDLASE----EQQRCERHPDGQ--YICY 428 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~---~t-----T~~~~~~~~~~~~~~----~~~~~~~~~~g~--~~~~ 428 (921)
....|+-+|..-.||||++.|+.|-....-... .. ......|...+.... +.......++.. -...
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 467899999999999999999988532110000 00 000111111110000 000000000000 0011
Q ss_pred cC--CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCC----CCCHHHHHHHHHhhhcCCeEEEEEeCCC
Q 002437 429 LP--SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADR----PLTESEVVFLRYTQQWKKKVVFVLNKSD 502 (921)
Q Consensus 429 ~p--~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~----~~t~~e~~~l~~l~~~~~~vivVlNK~D 502 (921)
.+ ..+++.+.+||+||.+-.. ..+.+-..-.|+.++++.++. |.|.+.+...+.++ -+.++++-||+|
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLM----aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiD 190 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILM----ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKID 190 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHH----HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhh
Confidence 11 2245679999999964211 111122233477788887664 33444333222222 267999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 503 LYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 503 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.......+ -.+++..-+... ..+..||+|+||.-.
T Consensus 191 li~e~~A~e-q~e~I~kFi~~t-~ae~aPiiPisAQlk 226 (466)
T KOG0466|consen 191 LIKESQALE-QHEQIQKFIQGT-VAEGAPIIPISAQLK 226 (466)
T ss_pred hhhHHHHHH-HHHHHHHHHhcc-ccCCCceeeehhhhc
Confidence 996532222 222222222221 236789999999764
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.6e-05 Score=73.56 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=39.2
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D 502 (921)
.+++||||||.+. ....++..||.+|+|+..+ ..+-+-+........--++|+||+|
T Consensus 92 ~D~iiIDtaG~~~-------~~~~~~~~Ad~~ivv~tpe----~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ-------SEVDIASMADTTVVVMAPG----AGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh-------hhhhHHHhCCEEEEEECCC----chhHHHHhhhhHhhhcCEEEEeCCC
Confidence 3799999999741 1335778899999999877 2333333333334445688999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.9e-05 Score=88.47 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+|++||.||+||||+||+|.|.+...++.+ ..|..+..+... ..+.|.|
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---------------------------~~v~LCD 365 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---------------------------PSVCLCD 365 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---------------------------CCceecC
Confidence 358999999999999999999999975544333 356666555443 2589999
Q ss_pred CCCC
Q 002437 442 TPGT 445 (921)
Q Consensus 442 TPG~ 445 (921)
|||+
T Consensus 366 CPGL 369 (562)
T KOG1424|consen 366 CPGL 369 (562)
T ss_pred CCCc
Confidence 9998
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00027 Score=75.91 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=102.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCc------HHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAER------VDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~------~dla~~~~a~GvHL~~~~l~-- 170 (921)
+..+.++.+...|++.+.+=+=+.+..........+..+++. +.+++++.- ..-+...||++|.++..-+.
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p 110 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANP 110 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCc
Confidence 666778888789998888866443221112223344444544 678888652 33344589999999875432
Q ss_pred --HHHHHHhcccCCCCccccCeEEEec---------------------CCH-HHHHcccccCCCCEEEeCCC----CCCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNV---------------------QTL-DAAFNASSSEGADFLVCCFG----EGQK 222 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~---------------------h~~-~e~~~A~~~~gaDyv~~gpv----Tk~~ 222 (921)
.......+| ++ ++ .++..+ -+. +.+.++ ...|+|++++.++ |++.
T Consensus 111 ~~~~ei~~~~g---~~-~i--v~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~g~~~ii~~~i~~~g~~~g 183 (253)
T PRK02083 111 ELISEAADRFG---SQ-CI--VVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEV-EELGAGEILLTSMDRDGTKNG 183 (253)
T ss_pred HHHHHHHHHcC---CC-CE--EEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHH-HHcCCCEEEEcCCcCCCCCCC
Confidence 222333333 23 32 233322 133 445666 7889999999886 3444
Q ss_pred CCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHH-cCCcEEEEeeccc
Q 002437 223 ADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLK-SGASGFVISLEDL 267 (921)
Q Consensus 223 ~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~-~Ga~gva~~~a~~ 267 (921)
+.+. ..++++..++||+|.||+. ++++.++.+ .|++||.+..|..
T Consensus 184 ~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~ 231 (253)
T PRK02083 184 YDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFH 231 (253)
T ss_pred cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence 4444 4778888899999999996 578988886 5999997766643
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=82.49 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=45.7
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||..............+ ....|.+++|+|+..+ .......+..++.-.+.-+|+||.|....
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLDGHAK 254 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECccCCCC
Confidence 3799999999864433332333333 2457899999998754 23344445555545677889999998654
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=97.78 E-value=8e-05 Score=78.44 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=61.9
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeC--CCCCC----------------------------------CCCcc-hhhhhhc
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCC--FGEGQ----------------------------------KADVI-ENSLFTN 233 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~g--pvTk~----------------------------------~~g~~-~~~~~~~ 233 (921)
+=+-|-|++|+.+| ..+|||+|.-= +.|.. .++++ +.++++.
T Consensus 117 fmad~~~l~EAlra-i~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~ 195 (287)
T TIGR00343 117 FVCGARDLGEALRR-INEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKL 195 (287)
T ss_pred EEccCCCHHHHHHH-HHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHh
Confidence 44457799999999 89999998532 11221 23444 4778888
Q ss_pred CCCCEE--EEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 234 VKIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 234 ~~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++||+ |+||| +|+|+..++++|++||+|.++.++.
T Consensus 196 ~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks 234 (287)
T TIGR00343 196 GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 234 (287)
T ss_pred CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcC
Confidence 899998 99999 9999999999999999999999764
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.3e-05 Score=85.66 Aligned_cols=146 Identities=15% Similarity=0.090 Sum_probs=93.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL--KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....|.+.-.-.+||||+-+.++--.-. ..+...+. .+...+.+ ...++.......-..+.|. -..++||
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~--~a~md~m~---~er~rgITiqSAAt~~~w~---~~~iNiI 109 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG--GATMDSME---LERQRGITIQSAATYFTWR---DYRINII 109 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccC--ceeeehHH---HHHhcCceeeeceeeeeec---cceeEEe
Confidence 4467999999999999999987632111 01111111 11111211 1122333333333333443 1369999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
||||..++.-+ +...++--|..|+|+++..+...+....++++++.+.|-+..+||+|.... ..-..++++...
T Consensus 110 DTPGHvDFT~E----VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa--~~~~~l~~i~~k 183 (721)
T KOG0465|consen 110 DTPGHVDFTFE----VERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGA--SPFRTLNQIRTK 183 (721)
T ss_pred cCCCceeEEEE----ehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCC--ChHHHHHHHHhh
Confidence 99998554322 445667789999999999888888888999999999999999999999876 334455555554
Q ss_pred HH
Q 002437 521 TM 522 (921)
Q Consensus 521 ~~ 522 (921)
+.
T Consensus 184 l~ 185 (721)
T KOG0465|consen 184 LN 185 (721)
T ss_pred cC
Confidence 43
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=77.06 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=63.3
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeC--CCCCC---------------------------------CCCcc-hhhhhhc
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCC--FGEGQ---------------------------------KADVI-ENSLFTN 233 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~g--pvTk~---------------------------------~~g~~-~~~~~~~ 233 (921)
++=+-|-|++|+.+| .++|+|+|.-- ..|.. .++++ +..+++.
T Consensus 114 l~MAD~stleEal~a-~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~ 192 (283)
T cd04727 114 PFVCGARNLGEALRR-ISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL 192 (283)
T ss_pred cEEccCCCHHHHHHH-HHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh
Confidence 455567899999999 89999998532 12322 23444 5778888
Q ss_pred CCCCEE--EEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 234 VKIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 234 ~~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++||+ |+||| +++|+..++++|++||+|.++.++.
T Consensus 193 ~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a 231 (283)
T cd04727 193 GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 231 (283)
T ss_pred cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcC
Confidence 899997 99999 9999999999999999999999764
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.5e-05 Score=83.89 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=24.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKD 392 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~ 392 (921)
..++|+|.+|+|||||||+|+|.....+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~ 192 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT 192 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 4788999999999999999999765443
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00075 Score=78.02 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=47.5
Q ss_pred cccEEEeCCCCChhhhHHHH---HHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQR---LTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~---~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
.+++||||||.......... ...... ....++|+++... ..++ ++++.+... .+.-+|+||+|.... +
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~--~~a~lLVLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlDEt~~---l 500 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR--QVTSLLVLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLDETGR---F 500 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhh--cCCcEEEEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCcCccc---h
Confidence 46999999998533222111 111112 2346677777643 2332 345544443 567799999998644 2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
-.++..+.. ...+|.+++.
T Consensus 501 G~aLsv~~~--------~~LPI~yvt~ 519 (559)
T PRK12727 501 GSALSVVVD--------HQMPITWVTD 519 (559)
T ss_pred hHHHHHHHH--------hCCCEEEEeC
Confidence 333333222 2467777765
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=73.76 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=96.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcH------HHHHhCCCCeEEcCCCCCCH-
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERV------DIAAAVNASGVLLSDQGLPA- 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~------dla~~~~a~GvHL~~~~l~~- 171 (921)
+..+.++..-+.|++.+++=+=+......-.....+..+++. +.++++...+ +-+...|+++|=+|...+.-
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~ 110 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENP 110 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCH
Confidence 556777777788998777654222111000112223344444 5678875422 22345689999998766542
Q ss_pred ---HHHHHhcccCCCCccccCeEEEec---------------------CC-HHHHHcccccCCCCEEEeCCCCC----CC
Q 002437 172 ---IVARNTMKDSMSESVVLPLVGRNV---------------------QT-LDAAFNASSSEGADFLVCCFGEG----QK 222 (921)
Q Consensus 172 ---~~~r~~~~~~~~~~~~~~~ig~S~---------------------h~-~~e~~~A~~~~gaDyv~~gpvTk----~~ 222 (921)
..+....+ .. .+ .+++.+ -+ .+.++.+ .+.|+|++.+..+++ +.
T Consensus 111 ~~~~~~~~~~~---~~-~i--~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~G~d~i~i~~i~~~g~~~g 183 (232)
T TIGR03572 111 DLIEEAARRFG---SQ-CV--VVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA-EQLGAGEILLNSIDRDGTMKG 183 (232)
T ss_pred HHHHHHHHHcC---Cc-eE--EEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH-HHcCCCEEEEeCCCccCCcCC
Confidence 12222222 12 11 223332 11 3455666 789999999999833 22
Q ss_pred CCcc-hhhhhhcCCCCEEEEcCCC-ccChHH-HHHcCCcEEEEeec
Q 002437 223 ADVI-ENSLFTNVKIPIFIMNASP-LVDVSK-FLKSGASGFVISLE 265 (921)
Q Consensus 223 ~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~-~~~~Ga~gva~~~a 265 (921)
+.++ ...+++.+++||+|.|||+ ++++.. +...|++||++..|
T Consensus 184 ~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 184 YDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred CCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 3333 4788888899999999996 677888 88899999987765
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=74.53 Aligned_cols=162 Identities=10% Similarity=0.087 Sum_probs=101.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCC---HHHHHHHHHHHHHHhhcCceEEecCc------HHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEAS---GKSVYEAACLLKSVVKDRALFLIAER------VDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~---~~~~~~~a~~l~~~~~~~~~~ivnd~------~dla~~~~a~GvHL~~~~l~ 170 (921)
+..+..+...+.|++.+.+=+=+.. ...-.+.++++.+.+ +.++++++. .+-+...|||.|-++..-+.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4456666666789887777532111 111233444444443 577888653 33445679999999876543
Q ss_pred ----HHHHHHhcccCCCCccccCeEE---------------EecCCHHHHHcccccCCCCEEEeCCCCC----CCCCcc-
Q 002437 171 ----AIVARNTMKDSMSESVVLPLVG---------------RNVQTLDAAFNASSSEGADFLVCCFGEG----QKADVI- 226 (921)
Q Consensus 171 ----~~~~r~~~~~~~~~~~~~~~ig---------------~S~h~~~e~~~A~~~~gaDyv~~gpvTk----~~~g~~- 226 (921)
...+.+.+| .+ ++ +++ .+-+++.++.+...+.|+|++++.+++. ..+..+
T Consensus 108 dp~~~~~i~~~~g---~~-~i--~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~ 181 (234)
T cd04732 108 NPELVKELLKEYG---GE-RI--VVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFEL 181 (234)
T ss_pred ChHHHHHHHHHcC---Cc-eE--EEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHH
Confidence 222333333 22 21 122 2345665544432678999999988733 223333
Q ss_pred hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..++++.+++||++.|||. ++++..+.+.|++||++.++.+..
T Consensus 182 i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 182 YKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 4778888899999999997 567999999999999988877654
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=79.17 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCe
Q 002437 452 QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVT 531 (921)
Q Consensus 452 ~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (921)
....+.+.+..+|+||+|+|+..|.+..+..+.+.+. ++|+++|+||+|+.+. .......+.+ .. ...+
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~-~~~~~~~~~~----~~----~~~~ 79 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADP-AVTKQWLKYF----EE----KGIK 79 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCH-HHHHHHHHHH----HH----cCCe
Confidence 3445677889999999999999887766666656553 5899999999999743 2222222222 11 1257
Q ss_pred EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 532 IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 532 v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
++++||+.+ .|+..|.+.+.+.+.
T Consensus 80 vi~iSa~~~---------------------------~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 80 ALAINAKKG---------------------------KGVKKIIKAAKKLLK 103 (276)
T ss_pred EEEEECCCc---------------------------ccHHHHHHHHHHHHH
Confidence 899999876 577888777776654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=73.21 Aligned_cols=93 Identities=25% Similarity=0.270 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCC
Q 002437 451 RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENV 530 (921)
Q Consensus 451 ~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 530 (921)
+..+.+.+.+.+||+|++|+|+..+....+..++..+. ++|+++|+||+|+... +......+. +.. ...
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~-~~~~~~~~~----~~~----~~~ 76 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADP-KKTKKWLKY----FES----KGE 76 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCCh-HHHHHHHHH----HHh----cCC
Confidence 33445677889999999999998877655555555443 4799999999999743 222222111 111 235
Q ss_pred eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 531 TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 531 ~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.++++||+.+ .|+++|.+.+.+.+
T Consensus 77 ~vi~iSa~~~---------------------------~gi~~L~~~l~~~l 100 (171)
T cd01856 77 KVLFVNAKSG---------------------------KGVKKLLKAAKKLL 100 (171)
T ss_pred eEEEEECCCc---------------------------ccHHHHHHHHHHHH
Confidence 6899999876 67888887777654
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00046 Score=71.75 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=92.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEec----C----cHHHHHhCCCCeE--EcCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIA----E----RVDIAAAVNASGV--LLSDQGL 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~ivn----d----~~dla~~~~a~Gv--HL~~~~l 169 (921)
+.+..++.+ ..|++++-+--. +....=.+..+.+++... +..++++ | ..+-+.+.|||-+ |......
T Consensus 13 ~a~~~~~~l-~~~v~~iev~~~-l~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~ 89 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEIGTP-LIKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDA 89 (206)
T ss_pred HHHHHHHHc-ccCeeEEEeCCH-HHHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHH
Confidence 556666665 899998887211 111111233444444321 2334422 2 3666777898864 6544221
Q ss_pred -C---HHHHHHhcccCCCCccccCeEEE-ecCC-HHHHHcccccCCCCEEEeCCCCC----CCCCcc-hhhhhhcCCCC-
Q 002437 170 -P---AIVARNTMKDSMSESVVLPLVGR-NVQT-LDAAFNASSSEGADFLVCCFGEG----QKADVI-ENSLFTNVKIP- 237 (921)
Q Consensus 170 -~---~~~~r~~~~~~~~~~~~~~~ig~-S~h~-~~e~~~A~~~~gaDyv~~gpvTk----~~~g~~-~~~~~~~~~~P- 237 (921)
+ ...+++ .| - + ..++. +..+ .+++..| ...|+||+.+.|.++ .+.++. ..++.+..+.|
T Consensus 90 ~~~~~i~~~~~-~g---~--~--~~~~~~~~~t~~~~~~~~-~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~ 160 (206)
T TIGR03128 90 TIKGAVKAAKK-HG---K--E--VQVDLINVKDKVKRAKEL-KELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEAR 160 (206)
T ss_pred HHHHHHHHHHH-cC---C--E--EEEEecCCCChHHHHHHH-HHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCc
Confidence 1 122333 22 1 1 12332 3233 4788888 678999999988632 223333 35555555444
Q ss_pred EEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 238 IFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 238 v~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+.+.|||+++|+.++.++|++++++.++.++.
T Consensus 161 i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 161 VAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred EEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 55599999999999999999999999998764
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.9e-05 Score=81.48 Aligned_cols=29 Identities=45% Similarity=0.533 Sum_probs=24.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG 393 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~ 393 (921)
..++++|.+|+|||||||+|+|.....++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g 190 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATG 190 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccc
Confidence 57999999999999999999997655433
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=72.09 Aligned_cols=69 Identities=25% Similarity=0.264 Sum_probs=47.1
Q ss_pred CEEEEEEeCCCCCCHHHHHHH-HHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 464 DLVLFVISADRPLTESEVVFL-RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 464 D~il~V~da~~~~t~~e~~~l-~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
|++|+|+|+..|.+..+..+. ..+...++|+++|+||+|+... ++..+... .+... ....++++||+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~-~~~~~~~~----~~~~~---~~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK-EVLRKWLA----YLRHS---YPTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH-HHHHHHHH----HHHhh---CCceEEEEeccCC
Confidence 899999999988766555544 4566678999999999999743 32222221 12222 1357899999886
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=76.55 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=62.9
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeC------C--------------------CCC---------CCCCcc-hhhhhhcC
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCC------F--------------------GEG---------QKADVI-ENSLFTNV 234 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~g------p--------------------vTk---------~~~g~~-~~~~~~~~ 234 (921)
+=+-|-|++|+.+| ..+|+|+|.-= . .|+ ..++++ +.++++..
T Consensus 124 fmad~~~l~EAlra-i~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~ 202 (293)
T PRK04180 124 FVCGARNLGEALRR-IAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG 202 (293)
T ss_pred EEccCCCHHHHHHH-HHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC
Confidence 44457799999999 89999998633 1 111 123444 57788888
Q ss_pred CCCEE--EEcCC-CccChHHHHHcCCcEEEEeecccccchH
Q 002437 235 KIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 235 ~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
++||+ |+||| +|+|+..++++||+||+|.++.+..-.+
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP 243 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDP 243 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCH
Confidence 99997 99999 9999999999999999999999754333
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00056 Score=73.09 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=99.4
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH---HHHHHHHHHHHHHhhcCceEEecCc---H---HHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG---KSVYEAACLLKSVVKDRALFLIAER---V---DIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~---~~~~~~a~~l~~~~~~~~~~ivnd~---~---dla~~~~a~GvHL~~~~l~ 170 (921)
+..+.++.+.+.|++.+.+=+=+.+. ..-.+.++++++.+ +.+++++.- . .-+...||++|=++..-+.
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 56677777778899877665533221 11223344443332 678888752 2 2233468999998865442
Q ss_pred H-HHH---HHhcccCCCCccccCeEEEec---------------------CCHHHHHcccccCCCCEEEeCCCCC----C
Q 002437 171 A-IVA---RNTMKDSMSESVVLPLVGRNV---------------------QTLDAAFNASSSEGADFLVCCFGEG----Q 221 (921)
Q Consensus 171 ~-~~~---r~~~~~~~~~~~~~~~ig~S~---------------------h~~~e~~~A~~~~gaDyv~~gpvTk----~ 221 (921)
- ... -..++ .+ ++ .++..+ ...+.+..+ .+.|+|++.++.++. +
T Consensus 106 ~p~~~~~i~~~~~---~~-~i--~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l-~~~G~d~i~v~~i~~~g~~~ 178 (243)
T cd04731 106 NPELIREIAKRFG---SQ-CV--VVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEV-EELGAGEILLTSMDRDGTKK 178 (243)
T ss_pred ChHHHHHHHHHcC---CC-CE--EEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHH-HHCCCCEEEEeccCCCCCCC
Confidence 1 111 22222 22 22 233322 123455667 789999999988832 3
Q ss_pred CCCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHc-CCcEEEEeecccc
Q 002437 222 KADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKS-GASGFVISLEDLS 268 (921)
Q Consensus 222 ~~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~-Ga~gva~~~a~~~ 268 (921)
.+.++ ...+.+.+++||+|.|||. ++++..+++. |++||++.+|...
T Consensus 179 g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 179 GYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 33333 4677778899999999994 8899999986 9999988777544
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00057 Score=73.97 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=41.8
Q ss_pred ccEEEeCCCCChhhhHHHHHHH---Hhc-----CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTE---EFV-----PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~---~~l-----~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||............. +.+ ..+|.+++|+|+.. ............+.-...-+|+||.|....
T Consensus 156 D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 156 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVGLTGIILTKLDGTAK 232 (272)
T ss_pred CEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCCCCEEEEEccCCCCC
Confidence 6899999998643322221122 222 24899999999974 333333333333323456789999998755
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00011 Score=75.50 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=50.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++||||||.+...........+++ ...+-+++|++++.. .++...+....+.-.+-=+++||.|...... .+
T Consensus 85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G---~~ 159 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG--QEDLEQALAFYEAFGIDGLILTKLDETARLG---AL 159 (196)
T ss_dssp SEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTCEEEEESTTSSSTTH---HH
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC--hHHHHHHHHHhhcccCceEEEEeecCCCCcc---cc
Confidence 5999999998644433323333332 257889999999854 3333333333332223356799999876532 22
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeccc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
...... ...||-+++.=
T Consensus 160 l~~~~~--------~~~Pi~~it~G 176 (196)
T PF00448_consen 160 LSLAYE--------SGLPISYITTG 176 (196)
T ss_dssp HHHHHH--------HTSEEEEEESS
T ss_pred eeHHHH--------hCCCeEEEECC
Confidence 222221 24778777753
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00021 Score=79.86 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=56.8
Q ss_pred hhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHH-HHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 002437 449 LQRQQRLTEEFVPRADLVLFVISADRPL-TESE-VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN 526 (921)
Q Consensus 449 ~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e-~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~ 526 (921)
.++...+.+..+.++|.+++|+|+.++. .... ..++..+...+.|+++|+||+|+... ++.+... +.+..
T Consensus 76 lpR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~-~~~~~~~----~~~~~--- 147 (352)
T PRK12289 76 LPRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP-TEQQQWQ----DRLQQ--- 147 (352)
T ss_pred eccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh-HHHHHHH----HHHHh---
Confidence 4555666777789999999999998654 3332 34566666678999999999999843 2222222 22221
Q ss_pred CCCCeEEEecccch
Q 002437 527 IENVTIYPVSARST 540 (921)
Q Consensus 527 ~~~~~v~~vSA~~~ 540 (921)
.+.+++++||+.+
T Consensus 148 -~g~~v~~iSA~tg 160 (352)
T PRK12289 148 -WGYQPLFISVETG 160 (352)
T ss_pred -cCCeEEEEEcCCC
Confidence 2457999999886
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00067 Score=75.01 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=49.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHH---hc-----CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEE---FV-----PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA 507 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~---~l-----~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~ 507 (921)
+++||||||.........+.... .+ ...|-+++|+|+..+. ....-.....+.-...-+|+||.|.....
T Consensus 198 D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTKlD~t~~~ 275 (318)
T PRK10416 198 DVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTKLDGTAKG 275 (318)
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEECCCCCCCc
Confidence 69999999985432221111111 11 3467899999998532 22221222222234567899999976442
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 508 FELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
-.+...... ...||.+++.
T Consensus 276 ---G~~l~~~~~--------~~~Pi~~v~~ 294 (318)
T PRK10416 276 ---GVVFAIADE--------LGIPIKFIGV 294 (318)
T ss_pred ---cHHHHHHHH--------HCCCEEEEeC
Confidence 222222211 1478988884
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00055 Score=75.93 Aligned_cols=89 Identities=20% Similarity=0.134 Sum_probs=50.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++||||||..............+. ...|.+++|+|+..+ ....+........-..--+++||.|...... .+
T Consensus 224 DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G---~~ 298 (336)
T PRK14974 224 DVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDADAKGG---AA 298 (336)
T ss_pred CEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCCCCcc---HH
Confidence 6899999998633222222222222 357899999999643 2222222333233345678999999875522 22
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
...... ...||.+++.
T Consensus 299 ls~~~~--------~~~Pi~~i~~ 314 (336)
T PRK14974 299 LSIAYV--------IGKPILFLGV 314 (336)
T ss_pred HHHHHH--------HCcCEEEEeC
Confidence 222211 1478888874
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=76.17 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=57.5
Q ss_pred hhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 002437 449 LQRQQRLTEEFVPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN 526 (921)
Q Consensus 449 ~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~ 526 (921)
.++...+++.++..+|.+++|+|+.+|. +.... .++..+...+.|+++|+||+|+.... ... ....+.+..
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~-~~~---~~~~~~~~~--- 95 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE-DME---KEQLDIYRN--- 95 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH-HHH---HHHHHHHHH---
Confidence 4555666777899999999999998765 55444 35555666789999999999997542 111 111122222
Q ss_pred CCCCeEEEecccch
Q 002437 527 IENVTIYPVSARST 540 (921)
Q Consensus 527 ~~~~~v~~vSA~~~ 540 (921)
...+++.+||+++
T Consensus 96 -~g~~v~~~SAktg 108 (245)
T TIGR00157 96 -IGYQVLMTSSKNQ 108 (245)
T ss_pred -CCCeEEEEecCCc
Confidence 2468999999987
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0003 Score=77.01 Aligned_cols=100 Identities=22% Similarity=0.319 Sum_probs=66.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
-||.. ......+.+.+..+|+||+|+|+..+.+..+..+.+.+. ++|+++|+||+|+.+. ...+...+.+.
T Consensus 7 fpgHm---~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-~~~~~~~~~~~--- 77 (287)
T PRK09563 7 FPGHM---AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-EVTKKWIEYFE--- 77 (287)
T ss_pred cHHHH---HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-HHHHHHHHHHH---
Confidence 36642 233344677789999999999999887766555555443 6899999999999643 22222222221
Q ss_pred HHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 522 MKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 522 ~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ...+++++|++.+ .|+..|.+.+.+.+.
T Consensus 78 -~----~~~~vi~vSa~~~---------------------------~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 78 -E----QGIKALAINAKKG---------------------------QGVKKILKAAKKLLK 106 (287)
T ss_pred -H----cCCeEEEEECCCc---------------------------ccHHHHHHHHHHHHH
Confidence 1 1357899999876 577777777766654
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00076 Score=75.54 Aligned_cols=99 Identities=14% Similarity=0.239 Sum_probs=64.5
Q ss_pred cEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-----------CHHHHHHHHHhhh----cCCeEEEEEeCC
Q 002437 437 MIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-----------TESEVVFLRYTQQ----WKKKVVFVLNKS 501 (921)
Q Consensus 437 l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-----------t~~e~~~l~~l~~----~~~~vivVlNK~ 501 (921)
+.++|..|.. .....+..++..+++||||+|.+... ..+....++.+.. .+.|+++++||.
T Consensus 186 ~~~~DvgGqr----~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 186 FRMFDVGGQR----SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred EEEEecCCch----hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 6789999963 33456777889999999999987521 1222334555443 347999999999
Q ss_pred CCCCC----------------hHHHHHHHHHHHHHHHHhhCC---CCCeEEEecccc
Q 002437 502 DLYQN----------------AFELEEAISFVKENTMKLLNI---ENVTIYPVSARS 539 (921)
Q Consensus 502 D~~~~----------------~~~~~~v~~~~~~~~~~~~~~---~~~~v~~vSA~~ 539 (921)
|+... ..+.+.+.+++.+.+...... ....+++++|..
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~D 318 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATD 318 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecc
Confidence 97532 134667777787777766542 223345555543
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0009 Score=70.98 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=101.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCC--H-HHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEAS--G-KSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~--~-~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~ 170 (921)
+..+.++...+.|++.+++=+=+.. . ..-.+..+++.+.+ +.++++.+ +++.+...||++|-++..-+.
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 5567777777889988887652211 1 12233444444443 56777754 344466689999999987654
Q ss_pred HH-HHHHhcccCCCCccccCeEEEe---------------cCCHHHHHcccccCCCCEEEeCCCCCC--CCC--cc-hhh
Q 002437 171 AI-VARNTMKDSMSESVVLPLVGRN---------------VQTLDAAFNASSSEGADFLVCCFGEGQ--KAD--VI-ENS 229 (921)
Q Consensus 171 ~~-~~r~~~~~~~~~~~~~~~ig~S---------------~h~~~e~~~A~~~~gaDyv~~gpvTk~--~~g--~~-~~~ 229 (921)
.. ..+.+.... ++ .+ .++.. -+++.++.++....|+|.+++-++++. ..| ++ ..+
T Consensus 109 ~~~~l~ei~~~~-~~-~i--~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~ 184 (233)
T PRK00748 109 NPELVKEACKKF-PG-KI--VVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRE 184 (233)
T ss_pred CHHHHHHHHHHh-CC-Cc--eeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHH
Confidence 21 222211000 12 11 23332 345555544436779998887777432 223 33 478
Q ss_pred hhhcCCCCEEEEcCCC-ccChHHHHHcC-CcEEEEeecccc
Q 002437 230 LFTNVKIPIFIMNASP-LVDVSKFLKSG-ASGFVISLEDLS 268 (921)
Q Consensus 230 ~~~~~~~Pv~aiGGi~-~~~~~~~~~~G-a~gva~~~a~~~ 268 (921)
+++.+++||++-|||. ++++.++.+.| ++||.+.+|.+.
T Consensus 185 l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 185 LAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 8888899999999995 68899999998 999988777654
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0001 Score=73.39 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=58.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCC-EEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRAD-LVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD-~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~v 513 (921)
++.||.+-| |=.- ..++ .-.| +-|||+|...+.....+- =-...+.-++|+||.|+.+.- .+++
T Consensus 98 Dll~iEs~G-NL~~------~~sp-~L~d~~~v~VidvteGe~~P~K~----gP~i~~aDllVInK~DLa~~v~~dle-- 163 (202)
T COG0378 98 DLLFIESVG-NLVC------PFSP-DLGDHLRVVVIDVTEGEDIPRKG----GPGIFKADLLVINKTDLAPYVGADLE-- 163 (202)
T ss_pred CEEEEecCc-ceec------ccCc-chhhceEEEEEECCCCCCCcccC----CCceeEeeEEEEehHHhHHHhCccHH--
Confidence 688899988 3110 1111 2234 889999988654211100 000112357899999998541 1222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
...++.++. . +..+|+++|++++ .|++++.+++...
T Consensus 164 --vm~~da~~~-n-p~~~ii~~n~ktg---------------------------~G~~~~~~~i~~~ 199 (202)
T COG0378 164 --VMARDAKEV-N-PEAPIIFTNLKTG---------------------------EGLDEWLRFIEPQ 199 (202)
T ss_pred --HHHHHHHHh-C-CCCCEEEEeCCCC---------------------------cCHHHHHHHHHhh
Confidence 223333332 2 4689999999998 6888887777653
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=71.47 Aligned_cols=143 Identities=18% Similarity=0.165 Sum_probs=97.7
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEec-----CcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCC
Q 002437 110 AKFVGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLIA-----ERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSM 182 (921)
Q Consensus 110 ~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~ivn-----d~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~ 182 (921)
++|+..+-. ...+.+++.+..+++++++.. |+-++.. +..+++.+.+++-|-++. ..|....+.+..
T Consensus 34 aGglG~l~~--~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~-g~p~~~i~~lk~--- 107 (307)
T TIGR03151 34 AGGLGIIGA--GNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA-GNPGKYIPRLKE--- 107 (307)
T ss_pred CCCcceecc--ccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC-CCcHHHHHHHHH---
Confidence 366777665 345677888888888887754 5555552 345667777887666543 345444444431
Q ss_pred CCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC-CCCCCC----cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHc
Q 002437 183 SESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG-EGQKAD----VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKS 255 (921)
Q Consensus 183 ~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv-Tk~~~g----~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~ 255 (921)
.. . .+-..|.+.+++.+| .+.|+|+|++-.. ..-|.| .. ..++++.+++||++.|||. ++++..++..
T Consensus 108 ~g-~---~v~~~v~s~~~a~~a-~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~ 182 (307)
T TIGR03151 108 NG-V---KVIPVVASVALAKRM-EKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFAL 182 (307)
T ss_pred cC-C---EEEEEcCCHHHHHHH-HHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHc
Confidence 12 1 334578999999999 8999999998333 222222 22 3677778899999999995 5669999999
Q ss_pred CCcEEEEe
Q 002437 256 GASGFVIS 263 (921)
Q Consensus 256 Ga~gva~~ 263 (921)
||+||.+.
T Consensus 183 GA~gV~iG 190 (307)
T TIGR03151 183 GAEAVQMG 190 (307)
T ss_pred CCCEeecc
Confidence 99999873
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.13 Score=60.59 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=65.5
Q ss_pred HHHhhhhhHHHHH---HHHHHHHHHHHHHhh-c----hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HH
Q 002437 807 LTSVLPTTLEDLL---ALGLCSAGGYIAVAN-F----PARRQRVIEKVNKIADGLA----REIEEAMQKDLQETV---GH 871 (921)
Q Consensus 807 ~~~i~~~~~~~~~---g~~~~~~~~~~~l~~-~----~~~~~~~~~k~r~~~~~~~----~~~~~~l~~q~~~~~---~~ 871 (921)
++.++-++.|..+ +...+++..|..+.. . +..+.+...+..+.++++. .+-....+.++..-+ .+
T Consensus 615 ggvi~K~vgwr~l~~l~a~y~~ly~~erl~w~i~dkeralk~q~~~~~~kkLq~~~~~h~a~cs~qi~~El~~vfa~l~r 694 (749)
T KOG0448|consen 615 GGVILKPVGWRSLSALLAPYGGLYLYERLTWTIHDKERALKVQFVNHLKKKLQEFDDSHTANCSHQIRQELRTVFAILCR 694 (749)
T ss_pred cceEEEeechHHHHHhhhHHHHHHhhhhceeeecCchhhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 3445555666544 444455555555432 1 2223333344444444432 222445555544433 44
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002437 872 LENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQ 916 (921)
Q Consensus 872 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~ 916 (921)
+..+.++.+..=...++.+++.++..|..+.-++++...+.++..
T Consensus 695 ~v~~~~~~~~d~~~~~~~~le~lds~q~~~K~~~~ka~~l~~el~ 739 (749)
T KOG0448|consen 695 TVDRVEEQMRDDLLATKKQLESLDSIQSRLKFFRSKALKLEYELI 739 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677778888999999999999999999998888765
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00023 Score=78.28 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=49.5
Q ss_pred cCCCCEEEEEEeCCCCCCHHH--HHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 460 VPRADLVLFVISADRPLTESE--VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 460 l~~aD~il~V~da~~~~t~~e--~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+.++|.+++|+|+.++..... ..++..+...+.|+++|+||+|+..+.+........ ... ...+++++||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~----~~~----~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLAL----YRA----IGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHH----HHH----CCCeEEEEeC
Confidence 489999999999976643222 346666777889999999999997443222222221 111 2368999999
Q ss_pred cch
Q 002437 538 RST 540 (921)
Q Consensus 538 ~~~ 540 (921)
+++
T Consensus 150 ~~g 152 (298)
T PRK00098 150 KEG 152 (298)
T ss_pred CCC
Confidence 876
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=69.71 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=104.7
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeC----CCCCHHHHH-----------------HHHHHHHHHhhcCceEE
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG----GEASGKSVY-----------------EAACLLKSVVKDRALFL 146 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~----k~~~~~~~~-----------------~~a~~l~~~~~~~~~~i 146 (921)
.|+..... +.+.+.+.+....++|++++++-- |-+|..... +..+.+++.+ ..+++
T Consensus 4 ~y~~~G~P-~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~ 80 (242)
T cd04724 4 PYITAGDP-DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIV 80 (242)
T ss_pred EEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEE
Confidence 45555532 234678888888899999999983 333433332 2233333222 34555
Q ss_pred e----cC--------cHHHHHhCCCCeEEcCCCCCCHHHHHHhccc---CCCCccccCeEEEecCCH-HHHHcccccCCC
Q 002437 147 I----AE--------RVDIAAAVNASGVLLSDQGLPAIVARNTMKD---SMSESVVLPLVGRNVQTL-DAAFNASSSEGA 210 (921)
Q Consensus 147 v----nd--------~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~---~~~~~~~~~~ig~S~h~~-~e~~~A~~~~ga 210 (921)
+ |. .++.+.+.|++|+-+. |+|.....++... .+.+ ..+.++.++. +.++.. .+...
T Consensus 81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~----~i~~i~P~T~~~~i~~i-~~~~~ 153 (242)
T cd04724 81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLD----LIFLVAPTTPDERIKKI-AELAS 153 (242)
T ss_pred EEEecCHHHHhCHHHHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCc----EEEEeCCCCCHHHHHHH-HhhCC
Confidence 4 42 3677888999999996 4454443322200 0022 1455677764 445544 33244
Q ss_pred CEE---EeCCCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 211 DFL---VCCFGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 211 Dyv---~~gpvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
||+ .+.|+|.. ..... .+.+++..++|++.=|||+ ++++..+.++ |+|+.+-++.++..
T Consensus 154 ~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~ 222 (242)
T cd04724 154 GFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKII 222 (242)
T ss_pred CCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHH
Confidence 443 34676432 22222 4677777899999999999 5599999999 99999888777654
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.29 Score=60.57 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=46.1
Q ss_pred EeCCCCCHHHHHHHHHCCCCCCCCC---CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCC
Q 002437 370 VGEYNSGKSSVINALLGKRYLKDGV---VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTN 446 (921)
Q Consensus 370 vG~~~aGKSTLiNaLlg~~~~~~~~---~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~ 446 (921)
+|.-|+|||||+|.|.|..+...+. .-||..+........ . ..-..+.++|+-|.+
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~-----------~----------~~~~~~~v~d~eg~d 59 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEV-----------E----------SSESNILVLDVEGTD 59 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhcccc-----------c----------cCCCceEEEeCCCCC
Confidence 5899999999999999998765443 335543221111100 0 000258899999997
Q ss_pred hhhh----HHH-HHHHHhcCCCCEEEEEE
Q 002437 447 VILQ----RQQ-RLTEEFVPRADLVLFVI 470 (921)
Q Consensus 447 ~~~~----~~~-~~~~~~l~~aD~il~V~ 470 (921)
+... .++ +...=.+.-+|++|+=+
T Consensus 60 ~~er~~~~~fe~~~alf~la~s~~~iiN~ 88 (742)
T PF05879_consen 60 GRERGEDQDFERKSALFALAVSDVLIINM 88 (742)
T ss_pred chhhccccchHHHHHHHHHHhhhheeeeh
Confidence 6521 111 12222335678777655
|
It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=65.99 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=41.4
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++++||||........-.....+. ...|.+++|+|+..+ ....+......+.....-+|+||.|....
T Consensus 84 d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~~~~viltk~D~~~~ 154 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALGITGVILTKLDGDAR 154 (173)
T ss_pred CEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCCCCEEEEECCcCCCC
Confidence 5899999998533222222222222 348999999998643 33334444443222246678899998765
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00011 Score=80.15 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=33.5
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT 398 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT 398 (921)
+....+++|+|.||+||||+||+|..++..+.|..|+-
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv 286 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV 286 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccc
Confidence 45678999999999999999999999999888887743
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.001 Score=75.11 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=57.2
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCC
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIEN 529 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~ 529 (921)
+.+..++..+...+|+|++|+|+.+....-..++.+.+ ..+|+++|+||+|+.+.....+.+.+++++.++. .+...
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~-~g~~~ 127 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE-LGLKP 127 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH-cCCCc
Confidence 45677788888999999999998765432222232222 2679999999999986533334445554444433 23222
Q ss_pred CeEEEecccch
Q 002437 530 VTIYPVSARST 540 (921)
Q Consensus 530 ~~v~~vSA~~~ 540 (921)
..++++||+.+
T Consensus 128 ~~i~~vSAk~g 138 (360)
T TIGR03597 128 VDIILVSAKKG 138 (360)
T ss_pred CcEEEecCCCC
Confidence 35999999887
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=7.3e-05 Score=80.78 Aligned_cols=34 Identities=35% Similarity=0.447 Sum_probs=29.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP 396 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~ 396 (921)
..+.|+|+|.||+||||+||+|...+++.+.+.|
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp 339 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP 339 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCC
Confidence 4689999999999999999999999988766554
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0037 Score=66.92 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=109.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----HH-----------------HHHHHHHHHHHHhhc-Cce
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----GK-----------------SVYEAACLLKSVVKD-RAL 144 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~~-----------------~~~~~a~~l~~~~~~-~~~ 144 (921)
-.|+..... +.+..++.+....++|++++-|=-|-.+ .. ...+.++++++ +. ..+
T Consensus 15 i~yi~aG~P-~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~--~~~~~p 91 (258)
T PRK13111 15 IPYITAGDP-DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIRE--KDPTIP 91 (258)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--cCCCCC
Confidence 556666542 2346778888888999999988665432 21 22333333331 22 445
Q ss_pred EEe----c--------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc---CCCCccccCeEEEecCCH-HHHHcccccC
Q 002437 145 FLI----A--------ERVDIAAAVNASGVLLSDQGLPAIVARNTMKD---SMSESVVLPLVGRNVQTL-DAAFNASSSE 208 (921)
Q Consensus 145 ~iv----n--------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~---~~~~~~~~~~ig~S~h~~-~e~~~A~~~~ 208 (921)
+++ | ...+.|.+.|+||++++ |||..+++..... .+-+ .+.-++.++. +.++.. .+.
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~----~I~lvap~t~~eri~~i-~~~ 164 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLD----LIFLVAPTTTDERLKKI-ASH 164 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCc----EEEEeCCCCCHHHHHHH-HHh
Confidence 443 2 24677888999999996 7888777655410 0022 1344666663 445544 345
Q ss_pred CCCEEEe-C--CCCCC----CCCcc--hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccccchH
Q 002437 209 GADFLVC-C--FGEGQ----KADVI--ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 209 gaDyv~~-g--pvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
.-+||-+ | ++|.. +..+. ...+++.+++||+.-+|| +++++.++.+. |+||.|.+|.++...+
T Consensus 165 s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~ 237 (258)
T PRK13111 165 ASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIEE 237 (258)
T ss_pred CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHh
Confidence 5566533 2 23332 22232 477888889999999999 78999999985 9999999988877543
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0007 Score=64.15 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=92.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCC-----CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLK-----DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~-----~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
..+|.++|....|||||+-...+..... .|...+... ..++. ..+ .+.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt-~~i~~----------------t~I----------sfS 72 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKT-VSIRG----------------TDI----------SFS 72 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeE-EEecc----------------eEE----------EEE
Confidence 3689999999999999999888875421 111111110 00100 001 378
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhhhcCCe--EEEEEeCCCCCCC--hHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQQWKKK--VVFVLNKSDLYQN--AFELEEA 513 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~~~~~~--vivVlNK~D~~~~--~~~~~~v 513 (921)
+||..|. ++...+..-.|.++-+|+|++|-+++.+-.. +++.++.+.+++. -|+|.+|.|..-. .+..+++
T Consensus 73 IwdlgG~----~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I 148 (205)
T KOG1673|consen 73 IWDLGGQ----REFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETI 148 (205)
T ss_pred EEecCCc----HhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHH
Confidence 9999996 4555556667789999999999988766544 4577777776643 3578999997543 3445556
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchH
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTL 541 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l 541 (921)
..+.+...+.. ..+.|++|+...+
T Consensus 149 ~~qar~YAk~m----nAsL~F~Sts~sI 172 (205)
T KOG1673|consen 149 SRQARKYAKVM----NASLFFCSTSHSI 172 (205)
T ss_pred HHHHHHHHHHh----CCcEEEeeccccc
Confidence 56555544433 4788999986653
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0016 Score=73.00 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.++|+|++|+||||++..|.+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.37 E-value=5.9e-05 Score=81.55 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCC--C---CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYL--K---DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~--~---~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..|+|+....+||||....++--.-. . ++...|..+ +-.. +.++........+..-|.. ..+.+
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtd-----fla~---erergitiqsaav~fdwkg---~rinl 106 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTD-----FLAI---ERERGITIQSAAVNFDWKG---HRINL 106 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHH-----HHHH---HHhcCceeeeeeeeccccc---ceEee
Confidence 47999999999999999887632110 0 111111111 1000 1112221111111111211 25899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|||||.-++.-+ +.+.++--|.++.|+|++.+...+.+.++++..+.+.|-++.+||+|.... ..+...+.+++
T Consensus 107 idtpghvdf~le----verclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a--nfe~avdsi~e 180 (753)
T KOG0464|consen 107 IDTPGHVDFRLE----VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA--NFENAVDSIEE 180 (753)
T ss_pred ecCCCcceEEEE----HHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh--hhhhHHHHHHH
Confidence 999997544322 344556679999999999888888888899999999999999999998754 33344444444
Q ss_pred H
Q 002437 520 N 520 (921)
Q Consensus 520 ~ 520 (921)
.
T Consensus 181 k 181 (753)
T KOG0464|consen 181 K 181 (753)
T ss_pred H
Confidence 3
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=73.59 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=42.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||-+......-.-...++ ...|.+++|+|+.... ..-.++++..+.. ..-=+++||.|-...
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~-~idglI~TKLDET~k 392 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDI-HIDGIVFTKFDETAS 392 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCC-CCCEEEEEcccCCCC
Confidence 7999999998643333222233333 3467889999886321 2224455555542 344578999998755
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00035 Score=77.57 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=77.3
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC---------
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP--------- 430 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p--------- 430 (921)
...+...+.|+.....|||||...|..+.-..++...... +|.++...+.+++......-+..+..
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~-----Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGET-----RFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCc-----cccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 3345567888889999999999999865322221111000 11111111112222211111111000
Q ss_pred ---CCc-ccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 431 ---SPI-LKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 431 ---~~~-l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
... ..-++|||+||.-++..+ ....++-.|..++|+|+-++...+....|.+.-.....-++|+||+|.
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSE----VTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSE----VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhh----hhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence 000 001799999998555433 556678899999999998887666666777665545555678999995
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=76.21 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=41.5
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||........-+-...+ +..+|.+++|+|+... ....+..+.....-...-+|+||.|....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~~l~i~gvIlTKlD~~a~ 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHEAVGIGGIIITKLDGTAK 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHhcCCCCEEEEecccCCCc
Confidence 799999999764433322212222 3468999999998764 23333333333222334678999997644
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=70.93 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=53.5
Q ss_pred cccEEEeCCCCChhhhHHHHHH-HHhc-CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLT-EEFV-PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~-~~~l-~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+-++|||..|.. .+-..+ .-.. .-.|...+++-++-+.....++.|........|+++|++|+|..+. +-+++
T Consensus 219 KviTFIDLAGHE----kYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPA-NiLqE 293 (641)
T KOG0463|consen 219 KVITFIDLAGHE----KYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPA-NILQE 293 (641)
T ss_pred eeEEEEeccchh----hhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcH-HHHHH
Confidence 348999999952 221111 1111 4578888888888766555556666666778999999999999854 44555
Q ss_pred HHHHHHHHH
Q 002437 513 AISFVKENT 521 (921)
Q Consensus 513 v~~~~~~~~ 521 (921)
..+.+...+
T Consensus 294 tmKll~rll 302 (641)
T KOG0463|consen 294 TMKLLTRLL 302 (641)
T ss_pred HHHHHHHHh
Confidence 555554443
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00064 Score=69.65 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=42.3
Q ss_pred ccEEEeC-CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCC
Q 002437 436 EMIIVDT-PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDT-PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~ 504 (921)
+++++|| .|+ + ..-+.....+|.+|.|+|.+...-..-.++-+...+.+ +++++|+||+|..
T Consensus 135 e~VivDtEAGi----E---HfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGI----E---HFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccch----h---hhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 5899999 454 2 23455678899999999987433222233333334567 8999999999954
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0019 Score=72.34 Aligned_cols=147 Identities=19% Similarity=0.232 Sum_probs=76.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccc--hh----------hcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE--EQ----------QRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~--~~----------~~~~~~~~g~~~~~~p 430 (921)
..+..++.|.-|||||||+|.|+... .+. ...+..-.++..+.. .. .......+|++-|...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~---~~~---~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~ 76 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNA---AGR---RIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVA 76 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcc---CCC---cEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCc
Confidence 44678899999999999999998532 110 000111111111100 00 0122334555444322
Q ss_pred CCc------------ccccEEEeCCCCChhhhHHHHHHHHhc---CCCCEEEEEEeCCCCCCHH----------------
Q 002437 431 SPI------------LKEMIIVDTPGTNVILQRQQRLTEEFV---PRADLVLFVISADRPLTES---------------- 479 (921)
Q Consensus 431 ~~~------------l~~l~lvDTPG~~~~~~~~~~~~~~~l---~~aD~il~V~da~~~~t~~---------------- 479 (921)
..+ -.+.++|.|.|+..+.+-........+ -..|.||.|+|+.+.....
T Consensus 77 ~dl~~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
T TIGR02475 77 DDFIPTMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADD 156 (341)
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccc
Confidence 111 125789999999654332222211111 2568899999997432100
Q ss_pred --------HHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 480 --------EVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 480 --------e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
...+..++. .--++|+||+|+.. +++++.+.+.++.
T Consensus 157 ~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~-~~~l~~~~~~l~~ 200 (341)
T TIGR02475 157 NLDHETPLEELFEDQLA---CADLVILNKADLLD-AAGLARVRAEIAA 200 (341)
T ss_pred cccccchHHHHHHHHHH---hCCEEEEeccccCC-HHHHHHHHHHHHH
Confidence 001123332 33578999999985 4555555555543
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0032 Score=76.29 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=40.4
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcC--CeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEV-VFLRYTQQWK--KKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~--~~vivVlNK~D~~~~ 506 (921)
++++||||||.........+....+. ...+-+++|+|+... ..++ ++++..+... ..-=+|+||.|-...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEATH 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCCC
Confidence 36999999996533333323233322 345678999998732 3333 2444433321 234578999998755
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0044 Score=71.40 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=41.8
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcC---CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVP---RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~---~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||..............++. ..+-+++|+++... ...-.+++......+ .--+++||+|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~~l~~~~~~f~~~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YEDLKDIYKHFSRLP-LDGLIFTKLDETSS 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HHHHHHHHHHhCCCC-CCEEEEeccccccc
Confidence 379999999986544433333444443 33467788888632 122234455554433 23578999998654
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0032 Score=67.67 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=101.1
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCCC-H
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGLP-A 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l~-~ 171 (921)
+..+.++...+.|++.+++=+=+.....-......+..+++. +.++++.. +++-+...||++|-+|..-+. +
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p 110 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNP 110 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhCh
Confidence 667888888889999988866433321222233344455555 67888754 233344579999999865432 1
Q ss_pred ---HHHHHhcccCCCCccccCeEEEec-----------------------CCH-HHHHcccccCCCCEEEeCCCCC----
Q 002437 172 ---IVARNTMKDSMSESVVLPLVGRNV-----------------------QTL-DAAFNASSSEGADFLVCCFGEG---- 220 (921)
Q Consensus 172 ---~~~r~~~~~~~~~~~~~~~ig~S~-----------------------h~~-~e~~~A~~~~gaDyv~~gpvTk---- 220 (921)
.......| ++ ++ .++..+ -+. +-+... .+.|+|.+.+..+++
T Consensus 111 ~~~~~~~~~~~---~~-~i--v~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l-~~~G~~~iivt~i~~~g~~ 183 (254)
T TIGR00735 111 ELIYELADRFG---SQ-CI--VVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEV-EKLGAGEILLTSMDKDGTK 183 (254)
T ss_pred HHHHHHHHHcC---CC-CE--EEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHH-HHcCCCEEEEeCcCcccCC
Confidence 12222233 23 32 234432 122 334555 678999999987733
Q ss_pred CCCCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcC-CcEEEEeecc
Q 002437 221 QKADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSG-ASGFVISLED 266 (921)
Q Consensus 221 ~~~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~G-a~gva~~~a~ 266 (921)
+.+.+. ...+++.+++||+|-|||. ++++.++.+.| ++||.+..+.
T Consensus 184 ~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 184 SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 333344 4778888899999999995 67899999988 9999765553
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0024 Score=70.50 Aligned_cols=159 Identities=23% Similarity=0.247 Sum_probs=86.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc-------chhhcccccCCCeEEeecCCCc----
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS-------EEQQRCERHPDGQYICYLPSPI---- 433 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~p~~~---- 433 (921)
++.++.|.=|||||||+|.|+...-. ... .+.+-++++.+. ..........+|++-|+....+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g---~ki---AVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~ 75 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDG---KKI---AVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPAL 75 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCC---CcE---EEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHH
Confidence 56778999999999999999865420 000 000111111100 0111233455677666532111
Q ss_pred --------ccccEEEeCCCCChhhhHHHHHHH-Hhc---CCCCEEEEEEeCCCCCCHHH---HHHHHHhhhcCCeEEEEE
Q 002437 434 --------LKEMIIVDTPGTNVILQRQQRLTE-EFV---PRADLVLFVISADRPLTESE---VVFLRYTQQWKKKVVFVL 498 (921)
Q Consensus 434 --------l~~l~lvDTPG~~~~~~~~~~~~~-~~l---~~aD~il~V~da~~~~t~~e---~~~l~~l~~~~~~vivVl 498 (921)
-.+..+|.|-|+..+.+-...... ..+ -.-|.+|-|+|+.+...... ..+..++. .-=++|+
T Consensus 76 ~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivl 152 (323)
T COG0523 76 ERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVL 152 (323)
T ss_pred HHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEE
Confidence 135789999999765443333322 112 34578999999986543222 11223333 3457899
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 499 NKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 499 NK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
||.|+..++ +++.....++ ++ + +..+|+..|...
T Consensus 153 NK~Dlv~~~-~l~~l~~~l~----~l-n-p~A~i~~~~~~~ 186 (323)
T COG0523 153 NKTDLVDAE-ELEALEARLR----KL-N-PRARIIETSYGD 186 (323)
T ss_pred ecccCCCHH-HHHHHHHHHH----Hh-C-CCCeEEEccccC
Confidence 999999663 3444433333 32 2 346788777643
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00057 Score=72.67 Aligned_cols=27 Identities=41% Similarity=0.591 Sum_probs=23.6
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....+.+.|+|.||+|||||||++...
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHH
Confidence 456789999999999999999998643
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0038 Score=67.23 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=98.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcH------HHHHhCCCCeEEcCCCCCC-H
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERV------DIAAAVNASGVLLSDQGLP-A 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~------dla~~~~a~GvHL~~~~l~-~ 171 (921)
+..+.++...+.|++.+++=+=+......-.....+..+|+. +.++++-+.+ .-+...|+++|-+|..-+. .
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~ 110 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDP 110 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCH
Confidence 667888888899998888866333211111123334444444 5677775422 2234568999999875433 1
Q ss_pred HHHHHh---cccCCCCccccCeEEEe--------------------cCCHHH-HHcccccCCCCEEEeCCCCC----CCC
Q 002437 172 IVARNT---MKDSMSESVVLPLVGRN--------------------VQTLDA-AFNASSSEGADFLVCCFGEG----QKA 223 (921)
Q Consensus 172 ~~~r~~---~~~~~~~~~~~~~ig~S--------------------~h~~~e-~~~A~~~~gaDyv~~gpvTk----~~~ 223 (921)
...+.+ ++ ++ ++ .++.. --++.+ +.++ .+.|++.+++-.++. ..+
T Consensus 111 ~~~~~~~~~~~---~~-~i--~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~-~~~g~~~ii~~~i~~~G~~~G~ 183 (258)
T PRK01033 111 DLITEAAERFG---SQ-SV--VVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEY-EALGAGEILLNSIDRDGTMKGY 183 (258)
T ss_pred HHHHHHHHHhC---CC-cE--EEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHH-HHcCCCEEEEEccCCCCCcCCC
Confidence 122222 22 22 21 12222 123444 4555 789999999987743 233
Q ss_pred Ccc-hhhhhhcCCCCEEEEcCCC-ccChHHHH-HcCCcEEEEeecc
Q 002437 224 DVI-ENSLFTNVKIPIFIMNASP-LVDVSKFL-KSGASGFVISLED 266 (921)
Q Consensus 224 g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~-~~Ga~gva~~~a~ 266 (921)
.++ ...+++.+++||+|-|||. ++++.++. ..|++||++.+|-
T Consensus 184 d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~ 229 (258)
T PRK01033 184 DLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLF 229 (258)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEccee
Confidence 343 4778888999999999996 68999998 7999999765544
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0035 Score=66.32 Aligned_cols=161 Identities=10% Similarity=0.092 Sum_probs=97.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHH---HHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKS---VYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~---~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~ 170 (921)
+..+.++..-+.|++.+++=+-+..... -.+..+++.+.| ..++++.+ .++-+...||++|-++..-+.
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4567777766888877777443332111 123444444444 45677754 333556689999998854432
Q ss_pred ----HHHHHHhcccCCCCccccCeEEEe-------cC--------CH-HHHHcccccCCCCEEEeCCCCCC----CCCcc
Q 002437 171 ----AIVARNTMKDSMSESVVLPLVGRN-------VQ--------TL-DAAFNASSSEGADFLVCCFGEGQ----KADVI 226 (921)
Q Consensus 171 ----~~~~r~~~~~~~~~~~~~~~ig~S-------~h--------~~-~e~~~A~~~~gaDyv~~gpvTk~----~~g~~ 226 (921)
...+-..+| ++ ++ +++.. +| ++ +-++.. .+.|+|.+++..++.. .+.+.
T Consensus 107 d~~~~~~~~~~~g---~~-~i--~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~g~~~ii~~~~~~~g~~~g~~~~ 179 (230)
T TIGR00007 107 NPDLVKELLKEYG---PE-RI--VVSLDARGGEVAVKGWLEKSEVSLEELAKRL-EELGLEGIIYTDISRDGTLSGPNFE 179 (230)
T ss_pred CHHHHHHHHHHhC---CC-cE--EEEEEEECCEEEEcCCcccCCCCHHHHHHHH-HhCCCCEEEEEeecCCCCcCCCCHH
Confidence 112222222 23 22 22211 12 33 334455 6889999998777322 23333
Q ss_pred -hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+++..++||++-|||. ++++..+..+||+||.+-++.+..
T Consensus 180 ~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 180 LTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 4777888899999999995 678999999999999887766543
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00043 Score=70.18 Aligned_cols=79 Identities=23% Similarity=0.210 Sum_probs=42.1
Q ss_pred ccEEEeCCCCChhhhH--HHHHHHHhcCCCCEEEEEEeCCCCCCHHH--HHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 436 EMIIVDTPGTNVILQR--QQRLTEEFVPRADLVLFVISADRPLTESE--VVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~--~~~~~~~~l~~aD~il~V~da~~~~t~~e--~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
+..||.+.|...+.+- ....... .-..+.++.|+|+.+...... .-+..++. .-=++|+||+|+.+.+..++
T Consensus 86 d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---~ADvIvlnK~D~~~~~~~i~ 161 (178)
T PF02492_consen 86 DRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIA---FADVIVLNKIDLVSDEQKIE 161 (178)
T ss_dssp SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHC---T-SEEEEE-GGGHHHH--HH
T ss_pred CEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcch---hcCEEEEeccccCChhhHHH
Confidence 6899999998654332 1111111 235689999999965311111 11233333 33478999999985432234
Q ss_pred HHHHHHH
Q 002437 512 EAISFVK 518 (921)
Q Consensus 512 ~v~~~~~ 518 (921)
.+.+.++
T Consensus 162 ~~~~~ir 168 (178)
T PF02492_consen 162 RVREMIR 168 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0085 Score=68.39 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=39.3
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.++++|||+|.........+....+. ...+-+++|+|+... ..+. +++...... ..-=+++||.|-...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~-~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH-GIHGCIITKVDEAAS 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEeeeCCCC
Confidence 36899999998643333323333332 234567888888743 2322 233333322 334568999998765
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0032 Score=70.05 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=39.7
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||.+......-.....+. ...|.+++|+++. ....+. +++..... -..--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~-l~i~glI~TKLDET~~ 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE-IPIDGFIITKMDETTR 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc-CCCCEEEEEcccCCCC
Confidence 37899999998543333323333333 2457778888764 233332 33333222 2344678999998754
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0044 Score=60.05 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=50.7
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++++|||+..+ ......+..+|.+++|++.+......-..+++.+.+ ...++.+|+|+++.. .+.++.
T Consensus 46 d~VIiD~p~~~~------~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~---~~~~~~ 116 (139)
T cd02038 46 DYIIIDTGAGIS------DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP---KEGKKV 116 (139)
T ss_pred CEEEEECCCCCC------HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH---HHHHHH
Confidence 699999998531 123466788999999999875433333455666543 245788999999743 333444
Q ss_pred HHHHHHHHHHh
Q 002437 514 ISFVKENTMKL 524 (921)
Q Consensus 514 ~~~~~~~~~~~ 524 (921)
.+.+.+-+.+.
T Consensus 117 ~~~~~~~~~r~ 127 (139)
T cd02038 117 FKRLSNVSNRF 127 (139)
T ss_pred HHHHHHHHHHH
Confidence 45554444443
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00085 Score=70.61 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=76.7
Q ss_pred HHHHHhCCCCeEEcCCC--CCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC--
Q 002437 151 VDIAAAVNASGVLLSDQ--GLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK-- 222 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~--~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~-- 222 (921)
++.+..+|+|||=++.. .++..+.+......+..+. ..| ..+|+.+++..+ ...|.|||.+.|+ |...
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl--~~I-~~v~~~~~~~~~-~~~~~~~I~~~p~~~igt~~~~~ 153 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGL--ESV-VCVNNPETSAAA-AALGPDYVAVEPPELIGTGIPVS 153 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCC--eEE-EEcCCHHHHHHH-hcCCCCEEEEeCccccccCCCCC
Confidence 56667789999988864 3444333322210000111 123 588999999988 7899999999995 3211
Q ss_pred ----CCcc--hhhhhhc-CCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 223 ----ADVI--ENSLFTN-VKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 223 ----~g~~--~~~~~~~-~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++. ...+++. .++||++.||| +++++..+.+.|++||.+.+|.++.
T Consensus 154 ~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 154 KAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 1111 1334443 36999999999 5667888899999999999999875
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=72.04 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=49.9
Q ss_pred hcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEec
Q 002437 459 FVPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVS 536 (921)
Q Consensus 459 ~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vS 536 (921)
.+.++|.+++|+|+.++. +.... .++..+...+.|+++|+||+|+....+. .. . ...... ...+++++|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~-~~---~-~~~~~~----~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEE-EL---E-LVEALA----LGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHH-HH---H-HHHHHh----CCCeEEEEE
Confidence 468999999999998876 44433 3566666778999999999999754211 11 1 111111 246899999
Q ss_pred ccch
Q 002437 537 ARST 540 (921)
Q Consensus 537 A~~~ 540 (921)
|+.+
T Consensus 146 A~~g 149 (287)
T cd01854 146 AKTG 149 (287)
T ss_pred CCCC
Confidence 9886
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0035 Score=81.38 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEc
Q 002437 327 IETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRF 406 (921)
Q Consensus 327 ~e~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~ 406 (921)
++..+..+.+.+..+++.... ....+-..|=.+|+|++|+||||+|+.. |.++ |............ .
T Consensus 83 ~~~l~~~~~~a~~~Lk~~~~~---------~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~--~ 149 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSRLG---------GRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRG--V 149 (1169)
T ss_pred HHHHHHHHHHHHHHHhhcccc---------CchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccC--C
Confidence 344445566666666654311 0112234566789999999999999987 5443 2111000000000 0
Q ss_pred cCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCCChhh----hHHHHHHHHhc---------CCCCEEEEEEeCC
Q 002437 407 SDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVIL----QRQQRLTEEFV---------PRADLVLFVISAD 473 (921)
Q Consensus 407 ~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~----~~~~~~~~~~l---------~~aD~il~V~da~ 473 (921)
+.+ .. | ..=+-.+-++|||+|-.... +.....+..++ +-.|.||+++|++
T Consensus 150 ~~t------------~~---c--~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~ 212 (1169)
T TIGR03348 150 GGT------------RN---C--DWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLA 212 (1169)
T ss_pred CCC------------cc---c--ceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHH
Confidence 000 00 0 00011357899999964221 12222333333 3479999999998
Q ss_pred CCCC--HHHHH--------HHHHhh---hcCCeEEEEEeCCCCCC
Q 002437 474 RPLT--ESEVV--------FLRYTQ---QWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 474 ~~~t--~~e~~--------~l~~l~---~~~~~vivVlNK~D~~~ 505 (921)
.-.+ ..+.. -|..+. ....||.+|+||+|++.
T Consensus 213 ~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 213 DLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 6543 23221 122232 24579999999999883
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.023 Score=60.26 Aligned_cols=152 Identities=25% Similarity=0.255 Sum_probs=93.2
Q ss_pred hcCCcEEEEeCC-------CCCHH---HHHHHHHHHHHHhh-c-CceEEecCcH---HHHHhCCCC--------eEEcCC
Q 002437 110 AKFVGIVVLNGG-------EASGK---SVYEAACLLKSVVK-D-RALFLIAERV---DIAAAVNAS--------GVLLSD 166 (921)
Q Consensus 110 ~~g~~~vqlR~k-------~~~~~---~~~~~a~~l~~~~~-~-~~~~ivnd~~---dla~~~~a~--------GvHL~~ 166 (921)
++|++.|.+-.- ..+.. .+...+.+++..+. . |+-++-||.. ++|.++||+ |+|++.
T Consensus 39 ~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d 118 (257)
T TIGR00259 39 EGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASD 118 (257)
T ss_pred hCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecc
Confidence 789999988441 22222 23334445555553 3 7778888854 678888876 788888
Q ss_pred CCCCH------HHHHHhcccCCCCccccC--eE----EEecCCHHHHHcccccCC-CCEEEeCCC-CCCCCCcc-hhhhh
Q 002437 167 QGLPA------IVARNTMKDSMSESVVLP--LV----GRNVQTLDAAFNASSSEG-ADFLVCCFG-EGQKADVI-ENSLF 231 (921)
Q Consensus 167 ~~l~~------~~~r~~~~~~~~~~~~~~--~i----g~S~h~~~e~~~A~~~~g-aDyv~~gpv-Tk~~~g~~-~~~~~ 231 (921)
+.+.. ..-|+.++ .+-+++. .+ -.+-.+++|..+.+...| ||-++++=. |....... ...++
T Consensus 119 ~G~~~~~a~e~~r~r~~l~---~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr 195 (257)
T TIGR00259 119 QGIIEGNAGELIRYKKLLG---SEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAK 195 (257)
T ss_pred cccccccHHHHHHHHHHcC---CCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHH
Confidence 76542 22355544 2212110 00 012346666444214455 999999766 55444444 45554
Q ss_pred hc-CCCCEEEEcCCCccChHHHHHcCCcEEEEeec
Q 002437 232 TN-VKIPIFIMNASPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 232 ~~-~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a 265 (921)
+. .++||+.-||++++|+.++++. ++|+-|.+.
T Consensus 196 ~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~ 229 (257)
T TIGR00259 196 ETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATT 229 (257)
T ss_pred hccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCC
Confidence 43 3689999999999999999997 999965443
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0071 Score=69.43 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=39.5
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||-....+........+ .-..|-+++|+|+..+ ....+..+...+.-...-+|+||.|....
T Consensus 185 DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~giIlTKlD~~~r 255 (433)
T PRK10867 185 DVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGVILTKLDGDAR 255 (433)
T ss_pred CEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEEEEeCccCccc
Confidence 689999999753322222211222 1356788999998632 33334444444322344678899996543
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0021 Score=72.45 Aligned_cols=72 Identities=29% Similarity=0.365 Sum_probs=51.0
Q ss_pred cCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEeccc
Q 002437 460 VPRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 460 l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
+.++|.+++|++++.++..... .+|..+...+.+.++|+||+|+.++. ++..+.+.. + ....+|+++|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~---~~~~~~~~~----~--~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDA---EEKIAEVEA----L--APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCH---HHHHHHHHH----h--CCCCcEEEEECC
Confidence 4788999999999876765444 46777777888889999999998542 122222222 2 234789999998
Q ss_pred ch
Q 002437 539 ST 540 (921)
Q Consensus 539 ~~ 540 (921)
.+
T Consensus 181 ~g 182 (356)
T PRK01889 181 DG 182 (356)
T ss_pred CC
Confidence 86
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0032 Score=69.71 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=70.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc--c----hhhcccccCCCeEEeecCCCc---
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS--E----EQQRCERHPDGQYICYLPSPI--- 433 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~--~----~~~~~~~~~~g~~~~~~p~~~--- 433 (921)
..+..++.|.-|||||||||.|+.... +.. ..+..-+++..+. . .........+|++-|.....+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~---~~r---iaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~ 76 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQH---GYK---IAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDA 76 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccc---CCc---ccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHH
Confidence 457888999999999999999985421 100 0000001111100 0 001122345666555433211
Q ss_pred -------------ccccEEEeCCCCChhhhHHHHHHH-Hhc---CCCCEEEEEEeCCCCCCHHH-H-HHHHHhhhcCCeE
Q 002437 434 -------------LKEMIIVDTPGTNVILQRQQRLTE-EFV---PRADLVLFVISADRPLTESE-V-VFLRYTQQWKKKV 494 (921)
Q Consensus 434 -------------l~~l~lvDTPG~~~~~~~~~~~~~-~~l---~~aD~il~V~da~~~~t~~e-~-~~l~~l~~~~~~v 494 (921)
-.+.++|.|.|+..+.+-...... ..+ -..|.++.|+|+.+.....+ . .+..++. .--
T Consensus 77 l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD 153 (318)
T PRK11537 77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YAD 153 (318)
T ss_pred HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCC
Confidence 135789999998644322222111 111 13588999999975322111 1 1223333 234
Q ss_pred EEEEeCCCCCCC
Q 002437 495 VFVLNKSDLYQN 506 (921)
Q Consensus 495 ivVlNK~D~~~~ 506 (921)
++|+||+|+...
T Consensus 154 ~IvlnK~Dl~~~ 165 (318)
T PRK11537 154 RILLTKTDVAGE 165 (318)
T ss_pred EEEEeccccCCH
Confidence 789999999853
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0027 Score=66.31 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=97.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCC------CCCHHHHHHHHHHHHHH-hhc--CceEEecCcHHH---HHhCCCCe--EEcC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGG------EASGKSVYEAACLLKSV-VKD--RALFLIAERVDI---AAAVNASG--VLLS 165 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k------~~~~~~~~~~a~~l~~~-~~~--~~~~ivnd~~dl---a~~~~a~G--vHL~ 165 (921)
.+-+.++++.++|++++|+--= +.+-. ....+.+++. +.- .+-|++.+.... ..+.|||= +|.-
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg--~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~E 90 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFG--APICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVE 90 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccC--HHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEccc
Confidence 5667888888899999999762 22211 2245566665 332 677888765443 34567774 5664
Q ss_pred CCCCCHH---HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCC-------CCCcc-hhhhhhcC
Q 002437 166 DQGLPAI---VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQ-------KADVI-ENSLFTNV 234 (921)
Q Consensus 166 ~~~l~~~---~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~-------~~g~~-~~~~~~~~ 234 (921)
..+-+.. ..|.. | -. .-++.+.+++-+...- .-.-+|+|++=.|... +.+++ .+++++..
T Consensus 91 a~~~~~~~l~~ik~~-g---~k----~GlalnP~Tp~~~i~~-~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~ 161 (220)
T PRK08883 91 ASEHVDRTLQLIKEH-G---CQ----AGVVLNPATPLHHLEY-IMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMI 161 (220)
T ss_pred CcccHHHHHHHHHHc-C---Cc----EEEEeCCCCCHHHHHH-HHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHH
Confidence 3332222 23332 2 11 1356666665443332 3456899887444111 12333 34444433
Q ss_pred -----CCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 235 -----KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 235 -----~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
++|+.+.|||+++|+.++.++||+++++.++.++
T Consensus 162 ~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 162 DESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred HhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 4999999999999999999999999999888764
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.04 Score=58.85 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=44.6
Q ss_pred CeEEEEEeCCCCCCC----hHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccc
Q 002437 492 KKVVFVLNKSDLYQN----AFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRI 567 (921)
Q Consensus 492 ~~vivVlNK~D~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 567 (921)
.|+++|++|+|.+.- .+-.++...+++..++++.-..+...|+.|.++.
T Consensus 223 i~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~--------------------------- 275 (473)
T KOG3905|consen 223 IPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKET--------------------------- 275 (473)
T ss_pred CcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccc---------------------------
Confidence 589999999998432 2334555566666666654334577899999874
Q ss_pred cchHHHHHHHHHhhcc
Q 002437 568 NTFDKLEKLLYSFLDG 583 (921)
Q Consensus 568 sg~~~L~~~l~~~l~~ 583 (921)
..++-|.++|...+-+
T Consensus 276 KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 276 KNIDLLYKYIVHRSYG 291 (473)
T ss_pred cchHHHHHHHHHHhcC
Confidence 5677888888766543
|
|
| >KOG2203 consensus GTP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.88 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=24.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLK 391 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~ 391 (921)
--+|+|+|+.++|||||+|.|.|.++..
T Consensus 37 YhVVavmG~QSSGKSTLLN~LFgTnF~~ 64 (772)
T KOG2203|consen 37 YHVVAVMGSQSSGKSTLLNHLFGTNFRE 64 (772)
T ss_pred eeEEEEecCcccchHHHHHHHhccChHH
Confidence 3589999999999999999999987654
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.01 Score=67.22 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=48.8
Q ss_pred HHHhcCCCC-EEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEE
Q 002437 456 TEEFVPRAD-LVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534 (921)
Q Consensus 456 ~~~~l~~aD-~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~ 534 (921)
+.+.+...| +|++|+|+.+.... -...+..+. .+.|+++|+||+|+.+.....+.+.+++....+ ..+.....++.
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k-~~g~~~~~v~~ 138 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAK-ELGLRPVDVVL 138 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHH-hcCCCcCcEEE
Confidence 455556566 99999998764422 222233322 267999999999997543223334344333322 22322236999
Q ss_pred ecccch
Q 002437 535 VSARST 540 (921)
Q Consensus 535 vSA~~~ 540 (921)
+||+.+
T Consensus 139 vSAk~g 144 (365)
T PRK13796 139 ISAQKG 144 (365)
T ss_pred EECCCC
Confidence 999886
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0024 Score=69.90 Aligned_cols=173 Identities=22% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC------------CCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG------------VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~------------~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
.+.+++|+|...+||||+-..++...-.... ....+.-.+.+ -+...++.........|...+..+
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~--ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWA--LDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEE--EcCchhhhhccceeeeeeEEEEec
Confidence 5679999999999999987776543211100 00111111111 111112222222222232222121
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC---------CHHHHHHHHHhhhcCCeEEEEEeCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL---------TESEVVFLRYTQQWKKKVVFVLNKS 501 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~---------t~~e~~~l~~l~~~~~~vivVlNK~ 501 (921)
. +.+++.|+||..+..+. +..-...||+-++|+++.... ...+..+|... ...+.+|+++||+
T Consensus 156 ~---~~ftiLDApGHk~fv~n----mI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKM 227 (501)
T KOG0459|consen 156 N---KRFTILDAPGHKSFVPN----MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKM 227 (501)
T ss_pred c---eeEEeeccCcccccchh----hccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEec
Confidence 1 46899999997544332 222346789999999885321 11111122211 1236799999999
Q ss_pred CCCCC---hHHHHHHHHHHHHHHHHhhC---CCCCeEEEecccchHHhhcc
Q 002437 502 DLYQN---AFELEEAISFVKENTMKLLN---IENVTIYPVSARSTLEAKLS 546 (921)
Q Consensus 502 D~~~~---~~~~~~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~l~a~~~ 546 (921)
|...- .+..+++.+.+..-++ .++ ..+...+++|..+|.+.+..
T Consensus 228 ddPtvnWs~eRy~E~~~k~~~fLr-~~g~n~~~d~~f~p~sg~tG~~~k~~ 277 (501)
T KOG0459|consen 228 DDPTVNWSNERYEECKEKLQPFLR-KLGFNPKPDKHFVPVSGLTGANVKDR 277 (501)
T ss_pred cCCccCcchhhHHHHHHHHHHHHH-HhcccCCCCceeeecccccccchhhc
Confidence 96532 3345555555554444 223 24567889999998665543
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0079 Score=64.51 Aligned_cols=172 Identities=11% Similarity=0.063 Sum_probs=103.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----HH-----------------HHHHHHHHHHHHhhc-Cce
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----GK-----------------SVYEAACLLKSVVKD-RAL 144 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~~-----------------~~~~~a~~l~~~~~~-~~~ 144 (921)
--|+..... +.+..++.+....++|++++-|=-|-.| .. ..++.+++++ +. ..+
T Consensus 18 i~yi~aG~P-~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r---~~~~~p 93 (263)
T CHL00200 18 IPFITAGDP-DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVN---GEIKAP 93 (263)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh---cCCCCC
Confidence 456665542 2346778888888999999988665432 22 2222333332 22 445
Q ss_pred EEe----c--------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhc---ccCCCCccccCeEEEecCCH-HHHHcccccC
Q 002437 145 FLI----A--------ERVDIAAAVNASGVLLSDQGLPAIVARNTM---KDSMSESVVLPLVGRNVQTL-DAAFNASSSE 208 (921)
Q Consensus 145 ~iv----n--------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~---~~~~~~~~~~~~ig~S~h~~-~e~~~A~~~~ 208 (921)
+++ | +.++-|.++|+|||=+.+ +|..+.-+.. ...+-+ .+.-++.++. +.++.- ..
T Consensus 94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipD--LP~ee~~~~~~~~~~~gi~----~I~lv~PtT~~eri~~i--~~ 165 (263)
T CHL00200 94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPD--LPYEESDYLISVCNLYNIE----LILLIAPTSSKSRIQKI--AR 165 (263)
T ss_pred EEEEecccHHHHhCHHHHHHHHHHcCCeEEEecC--CCHHHHHHHHHHHHHcCCC----EEEEECCCCCHHHHHHH--HH
Confidence 444 2 256788889999999954 4544443221 000012 1445556654 444432 22
Q ss_pred CCC-EEEe-C-C-CCCCC----CCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 209 GAD-FLVC-C-F-GEGQK----ADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 209 gaD-yv~~-g-p-vTk~~----~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
-++ ||-+ | | +|... ..+. ...+++.+++|++.=+||+ ++++.++..+||+||.+-+|.++.+
T Consensus 166 ~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 166 AAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred hCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 333 5543 3 2 24332 2222 3677778899999988998 9999999999999999988887764
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.01 Score=60.92 Aligned_cols=154 Identities=18% Similarity=0.089 Sum_probs=101.8
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHH-H
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAI-V 173 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~-~ 173 (921)
++..+.++.+.++|++.+-+--.+ ....+..+++++-+.. |+ .++=-+..+.|.+.||+=+-=+.-+-.+. .
T Consensus 20 e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~ 96 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKH 96 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 477899999999999999885533 3344555556554432 22 23334567888888987664333222222 2
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCC-cc-hhhhhhcC-CCCEEEEcCCCccChH
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKAD-VI-ENSLFTNV-KIPIFIMNASPLVDVS 250 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g-~~-~~~~~~~~-~~Pv~aiGGi~~~~~~ 250 (921)
++. . + ++.+-| |-++.|+..| .+.|+|++=+=|.. ..| .. .+.+..-. ++|.++.|||+++|+.
T Consensus 97 ~~~-~-----~--i~~iPG--~~TptEi~~A-~~~Ga~~vKlFPA~--~~GG~~yikal~~plp~i~~~ptGGV~~~N~~ 163 (204)
T TIGR01182 97 AQD-H-----G--IPIIPG--VATPSEIMLA-LELGITALKLFPAE--VSGGVKMLKALAGPFPQVRFCPTGGINLANVR 163 (204)
T ss_pred HHH-c-----C--CcEECC--CCCHHHHHHH-HHCCCCEEEECCch--hcCCHHHHHHHhccCCCCcEEecCCCCHHHHH
Confidence 222 1 1 111223 5699999999 89999999887751 122 33 34444433 6899999999999999
Q ss_pred HHHHcCCcEEEEeecccc
Q 002437 251 KFLKSGASGFVISLEDLS 268 (921)
Q Consensus 251 ~~~~~Ga~gva~~~a~~~ 268 (921)
+-+++|+.++++.+...+
T Consensus 164 ~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 164 DYLAAPNVACGGGSWLVP 181 (204)
T ss_pred HHHhCCCEEEEEChhhcC
Confidence 999999999987666654
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0071 Score=69.40 Aligned_cols=69 Identities=22% Similarity=0.173 Sum_probs=39.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||.....+........+ .-..|-+++|+|+..+ ....+........-...=+|+||.|....
T Consensus 184 DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 184 DVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGDAR 254 (428)
T ss_pred CEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCccc
Confidence 689999999743322221111111 2357889999998632 33333444433322344578999996543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=63.04 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=102.7
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----H-----------------HHHHHHHHHHHHHhhcCceE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----G-----------------KSVYEAACLLKSVVKDRALF 145 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~-----------------~~~~~~a~~l~~~~~~~~~~ 145 (921)
-.|+..... +.+...+.+....++|++++-|=-|-.+ . ...++.++++++-.. ..++
T Consensus 13 i~y~~aG~P-~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~pl 90 (256)
T TIGR00262 13 IPFVTAGDP-TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-NIPI 90 (256)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCE
Confidence 456665532 2346678888888999999998665332 1 233333344332201 2332
Q ss_pred Ee----c--------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhc---ccCCCCccccCeEEEecCC-HHHHHcc-cccC
Q 002437 146 LI----A--------ERVDIAAAVNASGVLLSDQGLPAIVARNTM---KDSMSESVVLPLVGRNVQT-LDAAFNA-SSSE 208 (921)
Q Consensus 146 iv----n--------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~---~~~~~~~~~~~~ig~S~h~-~~e~~~A-~~~~ 208 (921)
++ | ..++-+.+.|+||+=+. |+|....-... ...+.+ .++-++.++ .+.+..- ....
T Consensus 91 v~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~----~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 91 GLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVK----PIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred EEEEeccHHhhhhHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCc----EEEEECCCCCHHHHHHHHHhCC
Confidence 22 2 24667888999998886 45543332211 000022 134555555 4443321 0345
Q ss_pred CCCEEEe-CCCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 209 GADFLVC-CFGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 209 gaDyv~~-gpvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
|..|++- ..+|.. ++.+. .+.+++..+.||++=|||+ ++++.++.++||+||++-+|.++.+
T Consensus 165 gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 165 GFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred CCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 5666532 223432 22332 4777777889999999997 9999999999999999888876643
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=63.85 Aligned_cols=89 Identities=16% Similarity=0.272 Sum_probs=57.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC---C--------HHHHHHHHHhhhc----CCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL---T--------ESEVVFLRYTQQW----KKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~---t--------~~e~~~l~~l~~~----~~~vivVlNK 500 (921)
.+.++|.+|+- .+... +......+++||||++.+.-. . .+.+.+++.+..+ ..++|+.+||
T Consensus 196 ~f~~~DvGGQR---seRrK-WihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 196 KFRMFDVGGQR---SERKK-WIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred ceEEEeCCCcH---HHhhh-HHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 47899999973 22233 444779999999999876321 1 1223455666542 3689999999
Q ss_pred CCCCCC----------------hHHHHHHHHHHHHHHHHhhCCC
Q 002437 501 SDLYQN----------------AFELEEAISFVKENTMKLLNIE 528 (921)
Q Consensus 501 ~D~~~~----------------~~~~~~v~~~~~~~~~~~~~~~ 528 (921)
.|+... ....+++..++...+.++....
T Consensus 272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~ 315 (354)
T KOG0082|consen 272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNK 315 (354)
T ss_pred HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhccc
Confidence 998743 1234556666666666665543
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0012 Score=67.87 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
-+|.++|-|++||||++.-|.|......+...||..... |.+...- ..+.+.|.||
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vp-------------------G~~~y~g-----aKiqlldlpg 115 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVP-------------------GVIRYKG-----AKIQLLDLPG 115 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEec-------------------ceEeccc-----cceeeecCcc
Confidence 389999999999999999999986554555555532111 1110000 1489999999
Q ss_pred CChhhhH---HHHHHHHhcCCCCEEEEEEeCCCCCCH
Q 002437 445 TNVILQR---QQRLTEEFVPRADLVLFVISADRPLTE 478 (921)
Q Consensus 445 ~~~~~~~---~~~~~~~~l~~aD~il~V~da~~~~t~ 478 (921)
+-..... .........+.|++|++|+|+-.|++.
T Consensus 116 iiegakdgkgrg~qviavartcnli~~vld~~kp~~h 152 (358)
T KOG1487|consen 116 IIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH 152 (358)
T ss_pred hhcccccCCCCccEEEEEeecccEEEEEeeccCcccH
Confidence 8422111 112233445889999999999988753
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0078 Score=61.37 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=96.9
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHHH
Q 002437 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 98 ~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
.++..+.+++++++|++.+-+--.+-+ ..+..+.+++-+.. |+ .++=-+..+.|.+.||+=+--+. +....
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~---a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~--~~~~v 93 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPN---ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG--FDPEV 93 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTT---HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS----HHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCcc---HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC--CCHHH
Confidence 347789999999999999888665433 34445555555543 32 33334678888889987554443 23333
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCC-cc-hhhhhhcC-CCCEEEEcCCCccChH
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKAD-VI-ENSLFTNV-KIPIFIMNASPLVDVS 250 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g-~~-~~~~~~~~-~~Pv~aiGGi~~~~~~ 250 (921)
.+.... .+ ++.+=|+ -++.|+..| .+.|+|++=+=|. ...| +. .+.+..-. ++|.++.|||+++|+.
T Consensus 94 ~~~~~~---~~--i~~iPG~--~TptEi~~A-~~~G~~~vK~FPA--~~~GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~ 163 (196)
T PF01081_consen 94 IEYARE---YG--IPYIPGV--MTPTEIMQA-LEAGADIVKLFPA--GALGGPSYIKALRGPFPDLPFMPTGGVNPDNLA 163 (196)
T ss_dssp HHHHHH---HT--SEEEEEE--SSHHHHHHH-HHTT-SEEEETTT--TTTTHHHHHHHHHTTTTT-EEEEBSS--TTTHH
T ss_pred HHHHHH---cC--CcccCCc--CCHHHHHHH-HHCCCCEEEEecc--hhcCcHHHHHHHhccCCCCeEEEcCCCCHHHHH
Confidence 332221 11 1113354 599999999 8999999988776 2223 43 45555433 5889999999999999
Q ss_pred HHHHcCCcEEEEeeccccc
Q 002437 251 KFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 251 ~~~~~Ga~gva~~~a~~~~ 269 (921)
+-+++|+..+++-+...+.
T Consensus 164 ~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 164 EYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp HHHTSTTBSEEEESGGGSH
T ss_pred HHHhCCCEEEEECchhcCH
Confidence 9999999999877766553
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.026 Score=65.56 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....++|+|++|+||||++..|.+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3468999999999999999999864
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=65.29 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=66.9
Q ss_pred cCCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEeccc
Q 002437 460 VPRADLVLFVISADRPLTESEVV-FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 460 l~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
..++|.+++|++.+..++....+ ++..+...+.|+++|+||+|+.... +.+.+.... ..+.. ...+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~-~~~~~~~~~-~~y~~----~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE-GRAFVNEQL-DIYRN----IGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH-HHHHHHHHH-HHHHh----CCCeEEEEeCC
Confidence 46799999999987666655543 5555566778999999999998542 211221211 11111 24689999998
Q ss_pred chHHhhcccccccccCcccccccCccccccchHHHHHHHHH---hhccCCccchHHHHHhhc
Q 002437 539 STLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS---FLDGSSSTGKERMRLKLE 597 (921)
Q Consensus 539 ~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~---~l~~~~~~~~e~~~~kl~ 597 (921)
.+ .|+++|.+.+.. .+.+.+..+++.+-..|.
T Consensus 192 tg---------------------------~GideL~~~L~~ki~~~vG~sgVGKSTLiN~Ll 226 (347)
T PRK12288 192 TG---------------------------EGLEELEAALTGRISIFVGQSGVGKSSLINALL 226 (347)
T ss_pred CC---------------------------cCHHHHHHHHhhCCEEEECCCCCCHHHHHHHhc
Confidence 86 678888877754 344455555555444443
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0028 Score=71.66 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=39.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcC-----CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVP-----RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~-----~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||........-.....++. ...-+++|+|+.... ..-.++++.... -..-=+|+||.|-...
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f~~-~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAYES-LNYRRILLTKLDEADF 374 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHhcC-CCCCEEEEEcccCCCC
Confidence 68999999985332222222333332 234678899987542 122233333322 2345578999998755
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.047 Score=57.92 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=98.3
Q ss_pred HHHhcCCcEEEEeC-------CCCCHH---HHHHHHHHHHHHhh-c-CceEEecCc---HHHHHhCCCC--------eEE
Q 002437 107 EAVAKFVGIVVLNG-------GEASGK---SVYEAACLLKSVVK-D-RALFLIAER---VDIAAAVNAS--------GVL 163 (921)
Q Consensus 107 ~~l~~g~~~vqlR~-------k~~~~~---~~~~~a~~l~~~~~-~-~~~~ivnd~---~dla~~~~a~--------GvH 163 (921)
...++|++.|++-. +..+.. .+...+.+++.... . |+.++-||- ..+|.++||| |.|
T Consensus 37 ~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~ 116 (254)
T PF03437_consen 37 ALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAY 116 (254)
T ss_pred HHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEcee
Confidence 33479999999866 222322 23334455544443 2 777888885 4567778876 778
Q ss_pred cCCCCCCH------HHHHHhcccCCCCccccCeEEE--------ecCCHHHHH-cccccCCCCEEEeCCC-CCCCCCcc-
Q 002437 164 LSDQGLPA------IVARNTMKDSMSESVVLPLVGR--------NVQTLDAAF-NASSSEGADFLVCCFG-EGQKADVI- 226 (921)
Q Consensus 164 L~~~~l~~------~~~r~~~~~~~~~~~~~~~ig~--------S~h~~~e~~-~A~~~~gaDyv~~gpv-Tk~~~g~~- 226 (921)
++...+.. ...|+.++ .+.++ +-.+ +.-++++.. .|....+||.++++-- |..++.++
T Consensus 117 ~~d~G~~~~~a~e~~r~R~~l~---a~v~i--laDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~ 191 (254)
T PF03437_consen 117 VTDEGIIEGCAGELLRYRKRLG---ADVKI--LADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEK 191 (254)
T ss_pred cccCccccccHHHHHHHHHHcC---CCeEE--EeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHH
Confidence 87776542 33355554 33221 1111 112455543 3214678999999765 66666665
Q ss_pred hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeecc
Q 002437 227 ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 227 ~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
...+++.+++||+.-+|+|++|+.+.++. |+|+.|-+..
T Consensus 192 l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~ 230 (254)
T PF03437_consen 192 LKRVREAVPVPVLVGSGVTPENIAEYLSY-ADGAIVGSYF 230 (254)
T ss_pred HHHHHhcCCCCEEEecCCCHHHHHHHHHh-CCEEEEeeee
Confidence 57788888899999999999999999975 8999665543
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.02 Score=63.77 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=85.7
Q ss_pred HHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEe--c----CcHHHHHhCCCCeEEcCCCCC-C---HH---HH
Q 002437 108 AVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLI--A----ERVDIAAAVNASGVLLSDQGL-P---AI---VA 174 (921)
Q Consensus 108 ~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~iv--n----d~~dla~~~~a~GvHL~~~~l-~---~~---~~ 174 (921)
+-.+|+.++. + ..+..++.+..++++... .+-..+ + ++.+.+.+.|++.+++....- + .. ..
T Consensus 55 a~~GglGvi~-~--~~~~~~~~~~i~~vk~~l--~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~i 129 (325)
T cd00381 55 ARLGGIGVIH-R--NMSIEEQAEEVRKVKGRL--LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFI 129 (325)
T ss_pred HHCCCEEEEe-C--CCCHHHHHHHHHHhccCc--eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHH
Confidence 3457778776 3 355555555555554211 222222 1 245555667899988743211 1 12 22
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CCCC--CCcc----h---hhhhhcCCCCEE
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EGQK--ADVI----E---NSLFTNVKIPIF 239 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk~~--~g~~----~---~~~~~~~~~Pv~ 239 (921)
|... |+. .++.-.+-+.+.+..+ .+.|||+|.+| |- |... .|.. . .+.+...++||+
T Consensus 130 k~~~----p~v---~Vi~G~v~t~~~A~~l-~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI 201 (325)
T cd00381 130 KKKY----PNV---DVIAGNVVTAEAARDL-IDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI 201 (325)
T ss_pred HHHC----CCc---eEEECCCCCHHHHHHH-HhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE
Confidence 3322 331 2444577899999999 89999999874 52 2221 2222 1 233444579999
Q ss_pred EEcCCC-ccChHHHHHcCCcEEEE
Q 002437 240 IMNASP-LVDVSKFLKSGASGFVI 262 (921)
Q Consensus 240 aiGGi~-~~~~~~~~~~Ga~gva~ 262 (921)
|-|||. +.++..++++||++|.+
T Consensus 202 A~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 202 ADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred ecCCCCCHHHHHHHHHcCCCEEEe
Confidence 999996 68999999999999976
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.024 Score=62.45 Aligned_cols=77 Identities=19% Similarity=0.129 Sum_probs=57.8
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeC--CC----CCC--C---C--Ccc-hhhhhhcCCCCEEEEcCC-CccChHHHHH
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCC--FG----EGQ--K---A--DVI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLK 254 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk~--~---~--g~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~ 254 (921)
++.-.|-+.+++..+ ...|+|++.+| |- |.. . + ++. ..++++..++||+|-||| ++.++.++++
T Consensus 143 vi~g~V~t~e~a~~l-~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa 221 (326)
T PRK05458 143 VIAGNVGTPEAVREL-ENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR 221 (326)
T ss_pred EEEEecCCHHHHHHH-HHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH
Confidence 455567799999999 89999998877 33 221 1 1 222 356666678999999999 5889999999
Q ss_pred cCCcEEEEeeccc
Q 002437 255 SGASGFVISLEDL 267 (921)
Q Consensus 255 ~Ga~gva~~~a~~ 267 (921)
.||+.|.+-++..
T Consensus 222 ~GA~aV~vG~~~~ 234 (326)
T PRK05458 222 FGATMVMIGSLFA 234 (326)
T ss_pred hCCCEEEechhhc
Confidence 9999997765554
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0028 Score=71.43 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
.-+++|+|.+|+|||||+|+|+|...
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 35799999999999999999998654
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.029 Score=59.67 Aligned_cols=174 Identities=10% Similarity=0.050 Sum_probs=100.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----HH-----------------HHHHHHHHHHHHhhc-Cce
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----GK-----------------SVYEAACLLKSVVKD-RAL 144 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~~-----------------~~~~~a~~l~~~~~~-~~~ 144 (921)
--|+..... +.+..++.+....++|++++-|=-|-.+ .. ..++.+++++ +. ..+
T Consensus 5 i~yi~aG~P-~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r---~~~~~p 80 (250)
T PLN02591 5 IPYITAGDP-DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVA---PQLSCP 80 (250)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh---cCCCCC
Confidence 345555432 2336678888888999999988665442 21 2222233322 22 445
Q ss_pred EEe------------cCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCC-CccccCeEEEecCC-HHHHHcccccCCC
Q 002437 145 FLI------------AERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMS-ESVVLPLVGRNVQT-LDAAFNASSSEGA 210 (921)
Q Consensus 145 ~iv------------nd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~-~~~~~~~ig~S~h~-~~e~~~A~~~~ga 210 (921)
+++ .+.++-|.+.|+|||-++ |||..+.......-+. +... +.=+|-++ .+.++.. .+..-
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~--I~lv~Ptt~~~ri~~i-a~~~~ 155 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL--VLLTTPTTPTERMKAI-AEASE 155 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE--EEEeCCCCCHHHHHHH-HHhCC
Confidence 444 224667888999999997 6776544332210000 1011 23333333 3334433 23333
Q ss_pred CEEEe-C--CCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 211 DFLVC-C--FGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 211 Dyv~~-g--pvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+||-+ | .+|.. +..+. ...+++..++||+.--||+ ++++.++.+.||+||.|-+|.++.
T Consensus 156 gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~ 224 (250)
T PLN02591 156 GFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKA 224 (250)
T ss_pred CcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHh
Confidence 44432 3 34433 22333 3677778899999866997 999999999999999888877654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0045 Score=62.24 Aligned_cols=43 Identities=35% Similarity=0.348 Sum_probs=35.6
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHH--hhhcCCeEEEEEeCCCCCCC
Q 002437 464 DLVLFVISADRPLTESEVVFLRY--TQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 464 D~il~V~da~~~~t~~e~~~l~~--l~~~~~~vivVlNK~D~~~~ 506 (921)
|+|++|+|+..+.+..+..+.+. +...++|+|+|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 89999999999887766676666 55567899999999999743
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=59.12 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=43.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQ 505 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~ 505 (921)
++++|||||.... .+...+..+|.+|+|++.+......-..+++.+...+ ....+|+|++|...
T Consensus 64 d~viiD~p~~~~~------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER------GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH------HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999974311 2445567899999999887544333335566665544 45678999998653
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=67.88 Aligned_cols=115 Identities=22% Similarity=0.279 Sum_probs=68.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.+.+.|+|+.++|||.++++++|+.+.. +..+++.....+..-... |+. +-+.|-|.
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~------------g~~---------k~LiL~ei 481 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVK------------GQQ---------KYLILREI 481 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeec------------ccc---------ceEEEeec
Confidence 56899999999999999999999987765 333333322221110000 100 12344444
Q ss_pred CCC-ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHh--hhcCCeEEEEEeCCCCCCC
Q 002437 443 PGT-NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT--QQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~-~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l--~~~~~~vivVlNK~D~~~~ 506 (921)
+-. +... ...- ..||++++++|.+++.+.+-...+... ...+.|+++|.+|+|+-..
T Consensus 482 ~~~~~~~l------~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 482 GEDDQDFL------TSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEV 541 (625)
T ss_pred Cccccccc------cCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchh
Confidence 321 0010 0011 568999999999987665544332222 1266899999999998643
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.018 Score=65.35 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=39.5
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCC---CCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPR---ADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~---aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||........-.-...++.. .+-+++|+|+... ..+. +.++..... .+-=+++||.|-...
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlDet~~ 327 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLDETTC 327 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEeccCCCc
Confidence 3699999999864332222223333322 2358899999854 2222 333333322 245578999998755
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.024 Score=61.07 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=41.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||-+......-....+++ ...|-+++|+|+.... ..-.++++..+. -..-=+++||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~-~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKD-IHIDGIVFTKFDETAS 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCC-CCCCEEEEEeecCCCC
Confidence 7899999998633222222222333 3567889999987321 222244554444 2344578999998755
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.027 Score=62.95 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=71.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhccc-ccCCCeEEeecCCCc--------c
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCE-RHPDGQYICYLPSPI--------L 434 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~p~~~--------l 434 (921)
...|++||+||+||||-+--|..+.... .......-+|.-.|.....+-..... .......+++-|.++ -
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 6789999999999999998887654311 11111222222112111111000000 000001111111111 1
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCC--CEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRA--DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA 507 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~a--D~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~ 507 (921)
.+++||||.|-+..+...-.-+..++..+ .-+.+|++++.. ...-.+++++....... =+++||.|-...-
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~s~ 354 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETTSL 354 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccCch
Confidence 37999999998655555545555565333 345566666532 22333455555544332 3578999987653
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.052 Score=63.03 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=32.3
Q ss_pred CCeEEEEEeCCCCCCC---h-HHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 491 KKKVVFVLNKSDLYQN---A-FELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 491 ~~~vivVlNK~D~~~~---~-~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.|++||++|+|.... + .--++...++.+.++.+.-..+.-+|++|.+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~ 249 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEE 249 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecccc
Confidence 3599999999997542 1 112344555666666654445677888898764
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0063 Score=60.09 Aligned_cols=142 Identities=23% Similarity=0.340 Sum_probs=81.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++++++|..+.||+|+++..+-.++... ..+|+. ......+.. ..|++ .+..+|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~-y~at~Gv~~~pl~f~t------------n~g~i----------rf~~wd 65 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKT-YPATLGVEVHPLLFDT------------NRGQI----------RFNVWD 65 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceec-ccCcceeEEeeeeeec------------ccCcE----------EEEeee
Confidence 358999999999999999999876655322 223332 111111111 11222 378999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|.|.. .....-..|.-.+-..++++|....++-.... +-+.+.+ .+.|+++..||.|..... +.
T Consensus 66 tagqE----k~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~---------~k 132 (216)
T KOG0096|consen 66 TAGQE----KKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK---------VK 132 (216)
T ss_pred cccce----eecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc---------cc
Confidence 99973 22222233444455667777877666554442 2222222 237999999999986542 01
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..--.+........|.+||++.
T Consensus 133 ~k~v~~~rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 133 AKPVSFHRKKNLQYYEISAKSN 154 (216)
T ss_pred cccceeeecccceeEEeecccc
Confidence 1111112224577899999775
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.062 Score=56.87 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=99.4
Q ss_pred HHHHHHHHh-cCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCCC---
Q 002437 102 LDLIDEAVA-KFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGLP--- 170 (921)
Q Consensus 102 ~~~~~~~l~-~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l~--- 170 (921)
.+.++...+ .|++.+++=+=+............+.++|+. +.++.+-. ++.-....||+=|-+|..-+.
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~ 113 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTD 113 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHH
Confidence 455555556 6898888877433322222233445555555 67788743 333455579999999887553
Q ss_pred -HHHHHHhcccCCCCccccCeEEEec---------------CCHHH-HHcccccCCCCEEEeCCC----CCCCCCcc-hh
Q 002437 171 -AIVARNTMKDSMSESVVLPLVGRNV---------------QTLDA-AFNASSSEGADFLVCCFG----EGQKADVI-EN 228 (921)
Q Consensus 171 -~~~~r~~~~~~~~~~~~~~~ig~S~---------------h~~~e-~~~A~~~~gaDyv~~gpv----Tk~~~g~~-~~ 228 (921)
...+...+| + ++ .++.-. .++.+ +.+. ...|+..+++-.+ |...+.++ ..
T Consensus 114 ~l~~~~~~fg----~-~i--vvslD~~~g~v~~~gw~~~~~~~~~~~~~~~-~~~g~~~ii~tdi~~dGt~~G~~~~li~ 185 (234)
T PRK13587 114 WLKEMAHTFP----G-RI--YLSVDAYGEDIKVNGWEEDTELNLFSFVRQL-SDIPLGGIIYTDIAKDGKMSGPNFELTG 185 (234)
T ss_pred HHHHHHHHcC----C-CE--EEEEEeeCCEEEecCCcccCCCCHHHHHHHH-HHcCCCEEEEecccCcCCCCccCHHHHH
Confidence 222222332 2 22 222222 22333 4444 6789998888877 33344444 47
Q ss_pred hhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 229 SLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.+++.+++||++-||+. ++++..+.+.|++||++-.|..+
T Consensus 186 ~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 186 QLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 78888899999999995 68999999999999987666543
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.099 Score=54.37 Aligned_cols=166 Identities=13% Similarity=-0.000 Sum_probs=94.9
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeC-CCCCHHHH-HHHHHHHHHHhhc---CceEEecCcHH----HHHhC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG-GEASGKSV-YEAACLLKSVVKD---RALFLIAERVD----IAAAV 157 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~-k~~~~~~~-~~~a~~l~~~~~~---~~~~ivnd~~d----la~~~ 157 (921)
++|-||+. +-+..+.+.|++++=+=- +. +.+.. .+.|+.+...++. .+-+++|..++ ++..+
T Consensus 6 KICGi~~~--------eda~~~~~~Gad~iGfI~~~~-S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~ 76 (210)
T PRK01222 6 KICGITTP--------EDAEAAAELGADAIGFVFYPK-SPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETV 76 (210)
T ss_pred EECCCCcH--------HHHHHHHHcCCCEEEEccCCC-CCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhc
Confidence 55556654 446677788987765532 22 22222 4566777766653 35677887765 44557
Q ss_pred CCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHccc-ccCCCCEEEeCCCCCC--CCCcch--hhhhh
Q 002437 158 NASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNAS-SSEGADFLVCCFGEGQ--KADVIE--NSLFT 232 (921)
Q Consensus 158 ~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~-~~~gaDyv~~gpvTk~--~~g~~~--~~~~~ 232 (921)
+.|.|+|-.. .+...++.+.... +- .+ |-..++.+..++..+. ....+||+++-..+.. .-|... ..+..
T Consensus 77 ~~d~vQLHg~-e~~~~~~~l~~~~-~~-~i--ik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~ 151 (210)
T PRK01222 77 PLDLLQLHGD-ETPEFCRQLKRRY-GL-PV--IKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPA 151 (210)
T ss_pred CCCEEEECCC-CCHHHHHHHHhhc-CC-cE--EEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhh
Confidence 8899999543 3443343321000 11 22 3344555544443320 1246899998653221 112221 22313
Q ss_pred cCCCCEEEEcCCCccChHHHHHc-CCcEEEEeecc
Q 002437 233 NVKIPIFIMNASPLVDVSKFLKS-GASGFVISLED 266 (921)
Q Consensus 233 ~~~~Pv~aiGGi~~~~~~~~~~~-Ga~gva~~~a~ 266 (921)
..+.||+.-|||+++|+.++... +..||-+++..
T Consensus 152 ~~~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgv 186 (210)
T PRK01222 152 GLAKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGV 186 (210)
T ss_pred ccCCCEEEECCCCHHHHHHHHHhcCCCEEEecCce
Confidence 44779999999999999998875 88999765444
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.041 Score=57.08 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=94.5
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---CceEEec-CcHHHHHhCCCCeEEcCCCCCCHHHH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RALFLIA-ERVDIAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~~~ivn-d~~dla~~~~a~GvHL~~~~l~~~~~ 174 (921)
++.++.++.+.++|++++-+- ++.....+..+.+++-+.. |+=-+++ +..+.|.+.||+=+--+. +.....
T Consensus 27 ~~a~~i~~al~~~Gi~~iEit---l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~--~~~~vi 101 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVT---LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG--LTPPLL 101 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEe---cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC--CCHHHH
Confidence 477889999999999998885 3334455566666655432 3323333 457788888886333322 222333
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHHH
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSKF 252 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~ 252 (921)
+.... .+ . .++ --|.++.|+.+| .+.|+|++-+=|-..- -|+. .+.+.... .+|+++.|||+++|+.+.
T Consensus 102 ~~a~~---~~-i--~~i-PG~~TptEi~~a-~~~Ga~~vKlFPa~~~-gg~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~ 172 (212)
T PRK05718 102 KAAQE---GP-I--PLI-PGVSTPSELMLG-MELGLRTFKFFPAEAS-GGVKMLKALAGPFPDVRFCPTGGISPANYRDY 172 (212)
T ss_pred HHHHH---cC-C--CEe-CCCCCHHHHHHH-HHCCCCEEEEccchhc-cCHHHHHHHhccCCCCeEEEeCCCCHHHHHHH
Confidence 32221 11 1 123 135799999999 8999999999665211 1343 45555443 499999999999999999
Q ss_pred HHcCCcEE
Q 002437 253 LKSGASGF 260 (921)
Q Consensus 253 ~~~Ga~gv 260 (921)
+++|+..+
T Consensus 173 l~ag~v~~ 180 (212)
T PRK05718 173 LALPNVLC 180 (212)
T ss_pred HhCCCEEE
Confidence 99994433
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=64.84 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=58.0
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhh-hcC-CeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ-QWK-KKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI 527 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~-~~~-~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~ 527 (921)
..+..-..+.+..+|+||.|+||.+|+.....++=+.+. ..+ +.+|+|+||+|+++. +.++++..+++..
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~------- 205 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR-EVVEKWLVYLRRE------- 205 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH-HHHHHHHHHHHhh-------
Confidence 445556777789999999999999998655554444442 233 899999999999965 5566666665542
Q ss_pred CCCeEEEecccchH
Q 002437 528 ENVTIYPVSARSTL 541 (921)
Q Consensus 528 ~~~~v~~vSA~~~l 541 (921)
.+.|.+.++....
T Consensus 206 -~ptv~fkast~~~ 218 (435)
T KOG2484|consen 206 -GPTVAFKASTQMQ 218 (435)
T ss_pred -CCcceeecccccc
Confidence 3566676665553
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.04 Score=61.63 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=88.5
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEecCc-----------------HHHHHhCCCC----------
Q 002437 110 AKFVGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLIAER-----------------VDIAAAVNAS---------- 160 (921)
Q Consensus 110 ~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~ivnd~-----------------~dla~~~~a~---------- 160 (921)
++|+..+= .-..+.+++.+..++++++... ++-+++... .+++...+..
T Consensus 34 aGglG~l~--~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (330)
T PF03060_consen 34 AGGLGFLG--AGGLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALE 111 (330)
T ss_dssp TTSBEEEE--CTTSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHH
T ss_pred CCCEeecc--ccccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccc
Confidence 36666665 5567788888888888888765 555554321 1233344333
Q ss_pred ----eEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC-CCCCCCCC-----cc--hh
Q 002437 161 ----GVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC-FGEGQKAD-----VI--EN 228 (921)
Q Consensus 161 ----GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g-pvTk~~~g-----~~--~~ 228 (921)
.|-++....+....+.+.. .+ . .+-..+-|+++++.| .+.|+|.|++= +-.--|.| +- ..
T Consensus 112 ~~~~~v~~~~G~p~~~~i~~l~~---~g-i---~v~~~v~s~~~A~~a-~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~ 183 (330)
T PF03060_consen 112 AKPDVVSFGFGLPPPEVIERLHA---AG-I---KVIPQVTSVREARKA-AKAGADAIVAQGPEAGGHRGFEVGSTFSLLP 183 (330)
T ss_dssp S--SEEEEESSSC-HHHHHHHHH---TT-----EEEEEESSHHHHHHH-HHTT-SEEEEE-TTSSEE---SSG-HHHHHH
T ss_pred cceEEEEeecccchHHHHHHHHH---cC-C---ccccccCCHHHHHHh-hhcCCCEEEEeccccCCCCCccccceeeHHH
Confidence 5545444433555555543 33 2 455678899999999 89999998863 32111222 22 36
Q ss_pred hhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEE
Q 002437 229 SLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~ 262 (921)
++++..++||+|-||| +...+..++..||+||.+
T Consensus 184 ~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 184 QVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred HHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 7888889999999999 466799999999999977
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0087 Score=47.56 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=28.5
Q ss_pred CCCCEEEEEEeCCCCC---CHHHHHHHHHhhhc--CCeEEEEEeCCC
Q 002437 461 PRADLVLFVISADRPL---TESEVVFLRYTQQW--KKKVVFVLNKSD 502 (921)
Q Consensus 461 ~~aD~il~V~da~~~~---t~~e~~~l~~l~~~--~~~vivVlNK~D 502 (921)
.-.++|+|++|.+... -+++..+++.++.. ++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 5579999999998533 34556788888874 799999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.046 Score=55.97 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=94.1
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHHHH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~ 174 (921)
++..+.++.++++|++.+-+--- .....+.++++++-+.. |+ .++=-+..+.|.+.||+=+ ++.. +.....
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~---tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi-vSP~-~~~~vi 90 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLR---TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI-VSPG-TTQELL 90 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC---CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-ECCC-CCHHHH
Confidence 47788999999999999988553 33344555556554432 32 3333456778888888533 3222 222222
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEEcCCCccChHH
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIMNASPLVDVSK 251 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~ 251 (921)
+.... .+ ++.+=|+ -++.|+..| .+.|+|+|=+=|- ... |.. .+.+..-. ++|+++.|||+++|+.+
T Consensus 91 ~~a~~---~~--i~~iPG~--~TptEi~~A-~~~Ga~~vK~FPa--~~~GG~~yikal~~plp~~~l~ptGGV~~~n~~~ 160 (201)
T PRK06015 91 AAAND---SD--VPLLPGA--ATPSEVMAL-REEGYTVLKFFPA--EQAGGAAFLKALSSPLAGTFFCPTGGISLKNARD 160 (201)
T ss_pred HHHHH---cC--CCEeCCC--CCHHHHHHH-HHCCCCEEEECCc--hhhCCHHHHHHHHhhCCCCcEEecCCCCHHHHHH
Confidence 22210 11 1113344 589999999 8999999988774 122 233 35555443 59999999999999999
Q ss_pred HHHcCCcEEE
Q 002437 252 FLKSGASGFV 261 (921)
Q Consensus 252 ~~~~Ga~gva 261 (921)
-+++|+..++
T Consensus 161 ~l~ag~~~~~ 170 (201)
T PRK06015 161 YLSLPNVVCV 170 (201)
T ss_pred HHhCCCeEEE
Confidence 9999977443
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.038 Score=58.84 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=99.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCCC-H
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGLP-A 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l~-~ 171 (921)
+..+.++...+.|++.+++=+=+... ........+.++|+. +.++.+-. ++..+...||+-+-+|..-+. +
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p 111 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENP 111 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCH
Confidence 44577777778999888775532211 111122344455544 66777743 445566679999999886543 1
Q ss_pred HHHHHhcccCCCCccccCeEEE--------------ecCCHHH-HHcccccCCCCEEEeCCCCCC----CCCcc-hhhhh
Q 002437 172 IVARNTMKDSMSESVVLPLVGR--------------NVQTLDA-AFNASSSEGADFLVCCFGEGQ----KADVI-ENSLF 231 (921)
Q Consensus 172 ~~~r~~~~~~~~~~~~~~~ig~--------------S~h~~~e-~~~A~~~~gaDyv~~gpvTk~----~~g~~-~~~~~ 231 (921)
..++.+.... ++ .+ .++. +..++.+ +... .+.|++.+++-++|.. .+..+ ..+++
T Consensus 112 ~l~~~i~~~~-~~-~i--~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l-~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~ 186 (241)
T PRK14024 112 EWCARVIAEH-GD-RV--AVGLDVRGHTLAARGWTRDGGDLWEVLERL-DSAGCSRYVVTDVTKDGTLTGPNLELLREVC 186 (241)
T ss_pred HHHHHHHHHh-hh-hE--EEEEEEeccEeccCCeeecCccHHHHHHHH-HhcCCCEEEEEeecCCCCccCCCHHHHHHHH
Confidence 1222221000 11 11 1111 2234444 4555 7899999999888442 33333 47888
Q ss_pred hcCCCCEEEEcCCC-ccChHHHH---HcCCcEEEEeeccccc
Q 002437 232 TNVKIPIFIMNASP-LVDVSKFL---KSGASGFVISLEDLSL 269 (921)
Q Consensus 232 ~~~~~Pv~aiGGi~-~~~~~~~~---~~Ga~gva~~~a~~~~ 269 (921)
+.+++||+|-|||. ++++..+. ..|++||.+.+|....
T Consensus 187 ~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 187 ARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred hhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 88899999999995 67788775 3599999888776553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 921 | ||||
| 2j68_A | 695 | Bacterial Dynamin-Like Protein Bdlp, Gdp Bound Leng | 4e-07 | ||
| 1xi3_A | 215 | Thiamine Phosphate Pyrophosphorylase From Pyrococcu | 8e-05 | ||
| 1ega_A | 301 | Crystal Structure Of A Widely Conserved Gtpase Era | 4e-04 | ||
| 1x18_X | 292 | Contact Sites Of Era Gtpase On The Thermus Thermoph | 5e-04 |
| >pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound Length = 695 | Back alignment and structure |
|
| >pdb|1XI3|A Chain A, Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu-1255191-001 Length = 215 | Back alignment and structure |
|
| >pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era Length = 301 | Back alignment and structure |
|
| >pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 205 bits (521), Expect = 5e-56
Identities = 113/676 (16%), Positives = 236/676 (34%), Gaps = 93/676 (13%)
Query: 313 VAGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQI----------- 361
F++ +R Q+ L + + I KA + S + I
Sbjct: 7 TDRFIQDLERVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQ 66
Query: 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFS-------------- 407
F L+++G+ GKS+ +NAL+G+ L V P T +T LR+
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKS 126
Query: 408 ------------------DLASEEQQRCERHPDGQYI-CYLPSPILKE-MIIVDTPGTNV 447
+ EQ++ + PD Y P +L++ + IVD+PG N
Sbjct: 127 PQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLND 186
Query: 448 ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLR-YTQQWKKKVVFVLNKSDLYQN 506
R + L+ +V +LFV+ A +P T E +L Y + V F++N D +
Sbjct: 187 TEARNE-LSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245
Query: 507 ---AFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDS 563
+ E + + ++ N V ++ + ++ S++ L +
Sbjct: 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305
Query: 564 HWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQ 623
F K L +FL +ER +L +A + V + +Q
Sbjct: 306 DLDGTGFPKFMDSLNTFLT------RERAIAELRQVRTLARLACNHTREAVARRIPLLEQ 359
Query: 624 DLTLANEMIDSLKEYVMKMESESISWRRKTLSLIDSTKSRVVKLIESTL----------- 672
D+ + IDS++ K+ ++++ ++ D+ + + S +
Sbjct: 360 DVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDF 419
Query: 673 -----QISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDTQKLLGEYTMWLQSKNA 727
+++ D ++S +A + + D L +K + L +
Sbjct: 420 LRYQPELNLFDFLSSGKREAFNAALQKAFEQYITDKSAAWTLTAEKDINAAFKELSRSAS 479
Query: 728 REGRRYKESFENRWPSLVYLQPQVYPDMYELVRKVDGYSSRVIEDFS------ASSTSKM 781
+ G Y + + L +V+ G++ + S A
Sbjct: 480 QYGASYNQITDQITEKLTGKDVKVHTTTTAEEDNSPGWAKWAMGLLSLSKGNLAGFALAG 539
Query: 782 FEQEIREVFLGTFGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYIAVANFPARRQR 841
+ + + L F +G G+ ++ +L LL LG + R+
Sbjct: 540 AGFDWKNILLNYFTVIGIGGIITAVTGILLGPIGFALLGLG-------VGFLQADQARRE 592
Query: 842 VIEKVNKIADGLAREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKL-DRLSEIQDE 900
+++ +E+ + + + E + N V + Y+ ++ D + + E
Sbjct: 593 LVKT-------AKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSE 645
Query: 901 LSNVQEKIQTLQVEIQ 916
L N+ ++ QT ++ +
Sbjct: 646 LDNLVKQKQTREINRE 661
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 | Back alignment and structure |
|---|
Score = 160 bits (405), Expect = 1e-41
Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 34/257 (13%)
Query: 314 AGFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVS------QIDEPFLL 367
++K Q E R+V ++ + +EE S D ++
Sbjct: 9 FSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMV 68
Query: 368 VIVGEYNSGKSSVINALLGKRY--LKDGVVPTTNEITFLRFSDLASEEQ-QRCERHPDGQ 424
++ G+Y++GK+S I LL + + G PTT+ + + P+
Sbjct: 69 LVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKP 128
Query: 425 Y---------------ICYLPSPILKEMIIVDTPGTNVILQRQ-------QRLTEEFVPR 462
+ LP+ +L+ + I+DTPG +++ + F R
Sbjct: 129 FRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAER 188
Query: 463 ADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521
DL++ + A + E + + + K+ VLNK+D+ + +L +
Sbjct: 189 VDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQ-QLMRVYGALMWAL 247
Query: 522 MKLLNI-ENVTIYPVSA 537
K++ E + +Y S
Sbjct: 248 GKVVGTPEVLRVYIGSF 264
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 8e-24
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 48/242 (19%)
Query: 315 GFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDE-PFLLVIVGEY 373
G+ K + +++I E +L I++ +A + S + DA+ +ID + + GE
Sbjct: 22 GYFKKFNTGRKIISQE---ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGET 78
Query: 374 NSGKSSVINALLGKRYLKD-----GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICY 428
SGKSS IN L G ++ GVV T E +
Sbjct: 79 GSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH---------------------- 116
Query: 429 LPSPILKEMIIVDTPGTNVILQRQQR-LTEEFVPRADLVLFVISADRPLTESEVVFLRYT 487
P + ++ D PG L + D + + + ++++ +
Sbjct: 117 ---PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIII--SATRFKKNDIDIAKAI 171
Query: 488 QQWKKKVVFVLNKSDLY--------QNAFELEEAISFVKENTMKLLNIENVT---IYPVS 536
KK+ FV K D F+ E+ + ++ N + + I+ +S
Sbjct: 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS 231
Query: 537 AR 538
+
Sbjct: 232 NK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 6e-18
Identities = 126/727 (17%), Positives = 210/727 (28%), Gaps = 214/727 (29%)
Query: 224 DVIENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQMFCANG 283
D++ V F+ N DV KS ++S E++ D ++
Sbjct: 20 DILS------VFEDAFVDNFD-CKDVQDMPKS-----ILSKEEI----DHIIMS-----K 58
Query: 284 TTNEKTDRGEDVSNVKLLDTSNSFFGKERVAGFV---------------KFEDREKQLI- 327
T R L T S +E V FV K E R+ ++
Sbjct: 59 DAVSGTLR--------LFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 328 ---ETERSVLLEAIDVIKKAS-PLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINA 383
+R L V K + ++ L A+ ++ ++I G SGK+ V
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 384 LLGKRYLKDGVVPTT--NEITFLRFSDLASEEQQRCERHPDG-----QYICYLPSPILKE 436
+ V +I +L C P+ Q + Y P
Sbjct: 170 VC-----LSYKVQCKMDFKIFWLNLK--------NCNS-PETVLEMLQKLLYQIDPNWTS 215
Query: 437 MIIVDTPGTNVILQRQQRLTEEFV----PRADLVLFVISADRPLTESEVV--F------L 484
+ I Q L LVL + ++ F L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL------LNVQNAKAWNAFNLSCKIL 269
Query: 485 RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL----LNIENVTIYPVSARST 540
T+ K+V L+ + + +++ + L L+ + P +T
Sbjct: 270 LTTRF--KQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTT 325
Query: 541 LEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPI 600
+LS+ + +D N W+ DKL ++ S L+ LE
Sbjct: 326 NPRRLSIIAESIRDGLATWDN---WKHVNCDKLTTIIESSLN------------VLEP-- 368
Query: 601 RIAERLLSSCETLVMKDCQDAKQDLTLANEMIDSLKEYVMKMESESISWRRKTLSLI-DS 659
E + S I LSLI
Sbjct: 369 ----------------------------AEYRKMFDRLSVFPPSAHIP--TILLSLIWFD 398
Query: 660 TKSRVVKLIESTLQISNLDIVASYVFRGEKSAAMPSTSRIQHDIIGPALLDT-QKLLGEY 718
V ++ + L +L V + K ST I I L+ KL EY
Sbjct: 399 VIKSDVMVVVNKLHKYSL------VEKQPK----ESTISI-PSI----YLELKVKLENEY 443
Query: 719 TMWLQSKNAREGRRYKESFENRWPSLV--YLQPQVYPDMYELVRKVDGYSSRVIED-FSA 775
+ +R S+V Y P+ + + +D Y I
Sbjct: 444 AL------------------HR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 776 SSTSKMFEQEIREVFLGTFGGLGA----AGLSASLLTSVLPTTLEDLLALGLCSAGGYIA 831
+ R VFL F L + + S+L TL+ L YI
Sbjct: 484 IEHPERMT-LFRMVFL-DFRFLEQKIRHDSTAWNASGSILN-TLQQLKFY-----KPYIC 535
Query: 832 VANFPARRQRVIEKVNKIADGLAREIEEAMQKD-----LQETVGHLENFVTKVGKPYQDA 886
N P + VN I D L + IEE + L+ + + + +++A
Sbjct: 536 D-NDPKYERL----VNAILDFLPK-IEENLICSKYTDLLRIALMAEDEAI------FEEA 583
Query: 887 AQLKLDR 893
+ ++ R
Sbjct: 584 HK-QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 1e-10
Identities = 101/687 (14%), Positives = 188/687 (27%), Gaps = 210/687 (30%)
Query: 1 MKPLLS------LHHAPTRVPAPRFLSDPYFPIPRFKPPPHRTHFPIKSISNDN------ 48
K +LS + + V L F K F ++ + N
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKF-VEEVLRINYKFLMS 96
Query: 49 SFRSEDSA-AAPVISEKQQRPRT------LYPGGYKRPE--IKVPNVVLQLEPHQVLAGG 99
++E + +QR R R + +K+ +L+L P +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK----- 151
Query: 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAVNA 159
V+++G SGK+ + V +V
Sbjct: 152 ---------------NVLIDGVLGSGKTW-----VALDVCLS-------YKVQCK---MD 181
Query: 160 SGVL-LSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG 218
+ L +K+ S VL +Q L + + + +D
Sbjct: 182 FKIFWL------------NLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDHS---SN 222
Query: 219 EGQKADVIENSLFTNVKIPIFIMNASPLV--DVSKFLKSGASGFVISLEDLSLFNDG--V 274
+ I+ L +K + LV +V + + + FN +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQ------------NAKAWNAFNLSCKI 268
Query: 275 LSQMFCANGTTNEKTDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVL 334
L TT R + V++ T+ E + +L
Sbjct: 269 LL-------TT-----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---------LL 307
Query: 335 LEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGV 394
L+ +D + P E V + P L I+ E + + K D +
Sbjct: 308 LKYLDCRPQDLP--RE-------VLTTN-PRRLSIIAESIRDGLATWDNW--KHVNCDKL 355
Query: 395 VPTTNEITFLRFSDLASEEQQRCERH----PDGQYICYLPSPILK----------EMIIV 440
T E + + L E ++ P +I P+ +L M++V
Sbjct: 356 T-TIIESS---LNVLEPAEYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVVV 408
Query: 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV----FLRYTQQWKKKVVF 496
+ ++++Q + + +P L L V + +V +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD----L 464
Query: 497 VLNKSDLY---------QNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSV 547
+ D Y +N E F M L+ LE K+
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLF----RMVFLDF-----------RFLEQKIR- 508
Query: 548 SSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAERL- 606
H + N S +NT +L+ Y K + R+ +
Sbjct: 509 -------HDSTAWNASGSILNTLQQLKF--Y----------KPYICDNDPKYERLVNAIL 549
Query: 607 --LSSCET-LVMKDCQDAKQDLTLANE 630
L E L+ D + + L E
Sbjct: 550 DFLPKIEENLICSKYTDLLR-IALMAE 575
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 44/177 (24%)
Query: 369 IVGEYNSGKSSVINALLGKRYL----KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
+ G N GKSS +NAL+G+ G TT+ + + E HP G
Sbjct: 39 VAGRRNVGKSSFMNALVGQNVSIVSDYAGT--TTDPV------------YKSMELHPIGP 84
Query: 425 YICYLPSPILKEMIIVDTPG---TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV 481
+ +VDTPG + + + RAD + V + E +V
Sbjct: 85 ------------VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV 132
Query: 482 VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSAR 538
+ ++ + V V+NK D+ E E + + E + + VSA
Sbjct: 133 --VNLFKEMEIPFVVVVNKIDVLG---EKAEELKGLYE---SRYEAK---VLLVSAL 178
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 31/195 (15%), Positives = 65/195 (33%), Gaps = 42/195 (21%)
Query: 347 LMEEVSLLIDAVSQIDEPFL-LVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFL 404
E++ + Q D + ++++G+ GKSS +N+L+G++ ++
Sbjct: 18 TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRP--- 74
Query: 405 RFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG-------TNVILQRQQRLTE 457
R G + I+DTPG + L+ +
Sbjct: 75 ----------VMVSRTMGGF-----------TINIIDTPGLVEAGYVNHQALELIKGFLV 113
Query: 458 EFVPRADLVLFVISAD-RPLTESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQ-NAFEL 510
D++L+V D + E + + Q K + VL + +
Sbjct: 114 N--RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171
Query: 511 EEAISFVKENTMKLL 525
E S ++ +K +
Sbjct: 172 ETFSSKRSDSLLKTI 186
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 3e-10
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 36/160 (22%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+V+VG+ +GKS+ N++LG++ G + +++ ++ +
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSG-----------TAAKSITKKCEKRSSSWKETEL 80
Query: 427 CYLPSPILKEMIIVDTPG-------TNVILQRQQRLTEEFVPRADLVLFVISADRPLTES 479
++VDTPG + R P +L V+ R TE
Sbjct: 81 -----------VVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEE 128
Query: 480 EVVFLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEAI 514
E + + ++ + + D + L + +
Sbjct: 129 EHKATEKILKMFGERARSFMILIFTRKDDLGDT-NLHDYL 167
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-09
Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 40/194 (20%)
Query: 348 MEEVSLLIDAVSQIDEPFL-LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRF 406
++ L+ + Q D L ++++G+ GKSS +N+++G+R + +
Sbjct: 22 QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSE-------- 73
Query: 407 SDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG-------TNVILQRQQRLTEEF 459
R G + I+DTPG ++ L + +
Sbjct: 74 ----GPRPVMVSRSRAG-----------FTLNIIDTPGLIEGGYINDMALNIIKSFLLD- 117
Query: 460 VPRADLVLFVISADRP-LTESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQ-NAFELEE 512
D++L+V D + + + + K + L + + +E
Sbjct: 118 -KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDE 176
Query: 513 AISFVKENTMKLLN 526
S E ++++
Sbjct: 177 FFSKRSEALLQVVR 190
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 48/185 (25%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTT-------NEITFLRFSDLASEEQQRCERHP 421
IVG+ N GKS+++N LLG + V + + ++
Sbjct: 15 IVGKPNVGKSTLLNNLLGTK-----VSIISPKAGTTRMRV--------------LGVKNI 55
Query: 422 DGQYICYLPSPILKEMIIVDTPG-----TNVILQRQ-QRLTEEFVPRADLVLFVISADRP 475
+ ++I +DTPG + +L + ++ + AD++LF+I A
Sbjct: 56 PNEA----------QIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEG 105
Query: 476 LTES-EVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534
E ++ + + K V+ V+NK D A + I + + K + I P
Sbjct: 106 WRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHK---KHPELTE--IVP 160
Query: 535 VSARS 539
+SA
Sbjct: 161 ISALK 165
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Length = 215 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)
Query: 97 AGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAERVDIAA 155
++ + EA+ + + A + +YE L+ + ++ ALF + +RVD+A
Sbjct: 24 RLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVAL 83
Query: 156 AVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC 215
AV+A GV L + +P VA+ + ++G +V +L+ A A +GAD+L
Sbjct: 84 AVDADGVQLGPEDMPIEVAKEIAPN--------LIIGASVYSLEEALEA-EKKGADYLGA 134
Query: 216 --CFGEGQKADV----IE--NSLFTNVKIPIF-I--MNASPLVDVSKFLKSGASGF-VIS 263
F K D +E + +VKIP+ I +N + + LK+G G VIS
Sbjct: 135 GSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKD---NAREVLKTGVDGIAVIS 191
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 3e-08
Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 69/192 (35%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGV-----VP-TTNEITFLRFSDLASEEQQRCERH-- 420
IVG N GKS+++N LLG++ + TT RH
Sbjct: 13 IVGRPNVGKSTLLNKLLGQK-----ISITSRKAQTT--------------------RHRI 47
Query: 421 ------PDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPR--------ADLV 466
Q I VDTPG + ++R + + +LV
Sbjct: 48 VGIHTEGAYQ------------AIYVDTPG---LHMEEKRAINRLMNKAASSSIGDVELV 92
Query: 467 LFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN 526
+FV+ R + E+V L ++ K V+ +NK D Q +L + F+
Sbjct: 93 IFVVEGTRWTPDDEMV-LNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLAS------Q 145
Query: 527 IENVTIYPVSAR 538
+ + I P+SA
Sbjct: 146 MNFLDIVPISAE 157
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 41/190 (21%), Positives = 66/190 (34%), Gaps = 64/190 (33%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTN--EITFLRFSDLASEEQQRCERH------ 420
IVG+ N GKS+++N LLG + V P + + T R
Sbjct: 12 IVGKPNVGKSTLLNNLLGVK-----VAPISPRPQTT----------------RKRLRGIL 50
Query: 421 --PDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTE---EFVPRA----DLVLFVIS 471
Q ++ VDTPG + + L E + V A + V++V+
Sbjct: 51 TEGRRQ------------IVFVDTPG---LHKPMDALGEFMDQEVYEALADVNAVVWVVD 95
Query: 472 ADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIEN 529
P T + + R + K ++ V NK D + EEA+ E +
Sbjct: 96 LRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP---EEAMKAYHE------LLPE 146
Query: 530 VTIYPVSARS 539
+SA
Sbjct: 147 AEPRMLSALD 156
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Length = 540 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 12/139 (8%)
Query: 92 PHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-ALFLIAER 150
+ G ++ + V +V + +A K E A +K + +I +R
Sbjct: 18 SGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDR 77
Query: 151 VDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNA--SSSE 208
+D+A A+ A G+ + +P + R + M ++G +V + +
Sbjct: 78 IDVAMAIGADGIHVGQDDMPIPMIRKLVGPDM-------VIGWSVGFPEEVDELSKMGPD 130
Query: 209 GADFLVC--CFGEGQKADV 225
D++ F K +
Sbjct: 131 MVDYIGVGTLFPTLTKKNP 149
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* Length = 221 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIAERVDIAAAV 157
+ L I + V + + S + + L+ D+ ++ RVDIA
Sbjct: 28 PVEELARIIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRKLVMNGRVDIALFS 87
Query: 158 NASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCF 217
V L R +GR+V +L+ A A E AD++ F
Sbjct: 88 TIHRVQLPSGSFSPKQIRARFPHL--------HIGRSVHSLEEAVQA-EKEDADYV--LF 136
Query: 218 G 218
G
Sbjct: 137 G 137
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-07
Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 36/161 (22%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+++VG+ +GKS+ N++L K+ + + T +T + + + + I
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQT--LT---------KTCSKSQGSWGNREI 73
Query: 427 CYLPSPILKEMIIVDTPG-------TNVILQRQQRLTEEFVPRADLVLFVISADRPLTES 479
+I+DTP + + QR P ++L V R T
Sbjct: 74 -----------VIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRY-TSQ 121
Query: 480 EVVFLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEAIS 515
+ + ++ + + + L + +
Sbjct: 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMH 161
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* Length = 227 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 96 LAGGDALDLIDEAVAKFVGIVVL---NGGEASGKSVYEAACLLKSVVKDR-ALFLIAERV 151
D + ++ +A+ + G +G++ + A ++ ++ F++ + V
Sbjct: 28 NTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDV 87
Query: 152 DIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGAD 211
++A + A G+ + + A R + D ++G + T+ A +GAD
Sbjct: 88 ELALNLKADGIHIGQEDANAKEVRAAIGDM--------ILGVSAHTMSEVKQA-EEDGAD 138
Query: 212 FLVCCFG 218
++ G
Sbjct: 139 YV--GLG 143
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 43/214 (20%)
Query: 339 DVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGK-RYLKDGVVPT 397
+++ +EE L +++ +I + + IVG N GKS++ NA+L K R L + T
Sbjct: 155 TMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT 214
Query: 398 TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTE 457
T R D +E DG+ + + VDT G L+R+ R+
Sbjct: 215 T------R--DPVDDEVFI-----DGR-----------KYVFVDTAG----LRRKSRVEP 246
Query: 458 EFV------------PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505
V +AD+V+ V+ A + +T + ++ + V V NK DL
Sbjct: 247 RTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 306
Query: 506 NAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ + F K KL I+ + SA
Sbjct: 307 H--REKRYDEFTKLFREKLYFIDYSPLIFTSADK 338
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 45/206 (21%)
Query: 347 LMEEVSLLIDAVSQI---DEPFLLVIVGEYNSGKSSVINALLGK-RYLKDGVVPTTNEIT 402
L++ V+ + + +E ++G N GKSS++NA+LG+ R + V TT
Sbjct: 155 LLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT---- 210
Query: 403 FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTE--EF- 459
R D + Q E +IVDT G ++++ ++ E E
Sbjct: 211 --R--DAVDTSFTY-----NQQ-----------EFVIVDTAG----MRKKGKVYETTEKY 246
Query: 460 --------VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511
+ R+++V V+ + + E + Y + K VV V+NK D +
Sbjct: 247 SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK--DES 304
Query: 512 EAISFVKENTMKLLNIENVTIYPVSA 537
F + ++ I +SA
Sbjct: 305 TMKEFEENIRDHFQFLDYAPILFMSA 330
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} Length = 243 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 44/192 (22%), Positives = 65/192 (33%), Gaps = 35/192 (18%)
Query: 96 LAGGDALDLIDEAVAKFVGIV---------VLNGGEASGKSVYEAACLLKSVVKDR-ALF 145
GD + A+A V I+ L G + A +L ALF
Sbjct: 40 RERGDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALF 99
Query: 146 LIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNAS 205
+ +R DIA A A + L + LP VAR + L+GR+ D A
Sbjct: 100 AVNDRADIARAAGADVLHLGQRDLPVNVARQILAPDT-------LIGRSTHDPDQVAAA- 151
Query: 206 SSEGADFLVC--CFGEGQKAD--------VIENSLFTNVKIPIF-I--MNASPLVDVSKF 252
++ AD+ C+ K V + P F I +NA +
Sbjct: 152 AAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQ---RLPAV 208
Query: 253 LKSGASGF-VIS 263
L +GA V+
Sbjct: 209 LDAGARRIVVVR 220
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 55/193 (28%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+ G N GKS++I L GK+ ++ G P T +I +
Sbjct: 5 IFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIE--------------------- 42
Query: 427 CYLPSPILKEMIIVDTPG----TNVILQRQQRL-------TEEFVPRADLVLFVI----- 470
K I+D PG + + Q+R+ E+ D+ + V+
Sbjct: 43 -------WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAA 95
Query: 471 ------SADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524
R +V F ++ ++ + +NK D +N +E I+F+ E
Sbjct: 96 PEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152
Query: 525 LNIENVTIYPVSA 537
L+ + P+SA
Sbjct: 153 LSEIDKVFIPISA 165
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 9e-05
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 28/140 (20%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+VIVG N GKSS+ N LL KR VV +T R D
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKR---SAVVADVPGVT--R--D----------LK------ 40
Query: 427 CYLPSPIL-KEMIIVDTPG---TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV 482
++VDT G + ++ Q + + A++VLF + LT+++
Sbjct: 41 -EGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYE 99
Query: 483 FLRYTQQWKKKVVFVLNKSD 502
Y ++ K V+ V K D
Sbjct: 100 VAEYLRRKGKPVILVATKVD 119
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 22/98 (22%)
Query: 456 TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW---KKKVVFVLNKSDLYQNAFELEE 512
+ + +AD VLF++ K + V NK+D+ + E
Sbjct: 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSE 136
Query: 513 AISFVKENTMKLLNIENVTIYPVSARS-----TLEAKL 545
+ + +SAR+ L L
Sbjct: 137 --------------VNGHALIRLSARTGEGVDVLRNHL 160
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 456 TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515
T + + +AD+VLFV+ A PL E + L + K+ + V+NK D+ +
Sbjct: 317 TLQEIEKADIVLFVLDASSPLDEEDRKILERIKN--KRYLVVINKVDV----------VE 364
Query: 516 FVKENTMKLLNIENVTIYPVSARS-----TLEAKLSVSSAVGKDHSE 557
+ E +K + + +SA LE + + +
Sbjct: 365 KINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEIFERGS 411
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 17/97 (17%)
Query: 456 TEEFVPRADLVLFVISADRPLTESEVVFLR--YTQQWKKKVVFVLNKSDLYQNAFELEEA 513
+ + ADL+L+++ + E+ +R K + V NK D NA L A
Sbjct: 306 SRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRA 365
Query: 514 ISFVKENTMKLLNIENVTIYPVSARS-----TLEAKL 545
I+ + + +SA + TL+ +
Sbjct: 366 IA----------DGTGTEVIGISALNGDGIDTLKQHM 392
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 43/175 (24%)
Query: 374 NSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432
N GKSS++NAL ++ P T I F +
Sbjct: 33 NVGKSSLLNALFNRKIAFVSKTPGKTRSINF--YL------------------------- 65
Query: 433 ILKEMIIVDTPG------TNVILQRQQRLTEE-FVPRADLVLFVISAD--RPLTESEVVF 483
+ + VD PG + +RL E+ F R L + + D P +S+++
Sbjct: 66 VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMM 125
Query: 484 LRYTQQWKKKVVFVLNKSD-LYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537
+ + + VL K D + + E + + ++ TI P S+
Sbjct: 126 VEWMKSLNIPFTIVLTKMDKVKMS--ERAKKLEEHRK---VFSKYGEYTIIPTSS 175
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 456 TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515
+ + ADLVL I A T + + + ++ V+NK DL +
Sbjct: 297 SRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLITSLEYP 354
Query: 516 FVKENTMKL 524
+
Sbjct: 355 ENITQIVHT 363
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 921 | |||
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 100.0 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.97 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 99.97 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 99.94 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 99.88 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 99.85 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 99.83 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 99.79 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.75 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 99.75 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 99.74 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.73 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.73 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.71 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.71 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 99.71 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.7 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.7 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.7 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.69 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.67 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.67 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.65 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.64 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.64 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.64 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.63 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.63 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.62 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.61 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.61 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.61 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.61 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.61 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.61 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.61 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.61 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.6 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.6 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.6 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.6 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.6 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.6 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.6 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.59 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.59 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.59 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.59 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.59 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.59 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.59 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.59 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 99.59 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.59 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.58 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.58 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.58 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.58 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.58 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.58 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.58 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.58 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.58 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.58 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.58 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.58 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.58 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.57 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.57 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.57 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.57 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.57 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.57 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.57 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.57 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.57 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.56 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.56 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.56 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.56 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.56 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.56 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.56 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.56 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.56 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.56 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.56 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.56 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.56 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.56 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.55 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.55 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.55 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.55 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.55 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.55 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.55 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.54 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.54 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.54 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.54 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.54 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.54 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.54 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.54 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.54 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.54 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.54 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.53 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.53 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.53 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.53 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.53 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.53 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.53 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.53 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.53 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.53 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.53 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 99.53 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.53 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.53 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.53 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.52 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.52 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.52 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.52 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.52 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.52 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.51 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.51 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.51 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.51 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.51 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.51 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.51 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.5 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.5 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.49 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.49 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.49 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.49 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.49 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.49 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.49 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.48 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.48 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.48 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.48 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.48 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.47 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.47 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.47 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.2 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.46 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.46 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.46 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.44 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.43 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.43 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.43 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.43 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.43 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.43 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.42 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.42 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.41 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 99.41 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.41 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.4 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.4 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.4 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.39 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.39 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.39 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.38 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.37 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.37 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.36 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.36 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.36 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.33 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.33 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.32 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.3 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.3 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.3 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.29 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.28 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.28 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.28 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 99.27 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.26 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 99.26 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.26 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.25 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.24 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.24 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 99.22 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.21 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.21 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.21 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.2 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.19 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 99.19 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.17 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.14 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.14 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.13 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.13 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.12 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.12 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.12 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.12 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.11 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.11 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.11 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 99.1 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.09 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.08 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.07 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.05 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.04 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.03 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.03 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 99.02 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 99.01 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.01 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 99.01 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.98 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.97 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.95 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.94 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.94 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.94 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.92 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.91 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 98.91 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.9 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.87 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.86 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.85 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.79 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 98.77 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 98.72 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 98.66 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 98.64 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.59 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 98.58 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 98.58 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 98.55 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 98.55 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.54 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.53 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.5 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.49 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 98.48 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 98.46 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.45 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.42 | |
| 1t3j_A | 96 | Mitofusin 1; coiled coil antiparallel, dimer, memb | 98.3 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 98.29 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.26 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.22 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.2 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.19 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 98.18 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.17 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.13 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 98.11 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.11 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.08 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.06 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 97.91 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.85 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.85 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.82 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 97.82 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 97.74 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 97.73 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 97.7 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.69 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.65 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.64 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.62 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 97.58 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.58 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.57 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.5 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.5 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.46 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.43 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.4 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 97.4 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.39 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.33 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.32 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 97.3 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 97.23 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 97.23 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 97.19 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 97.12 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 97.12 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 97.11 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 97.08 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.01 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.0 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 96.96 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 96.96 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.96 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 96.96 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 96.92 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 96.89 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.89 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 96.88 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.87 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 96.84 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 96.83 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 96.8 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 96.79 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.77 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.76 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.74 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.7 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 96.63 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.63 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.61 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 96.59 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.54 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.45 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.33 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 96.22 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 96.19 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 96.18 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.04 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 95.93 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 95.87 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 95.83 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 95.8 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 95.75 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 95.73 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 95.71 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 95.58 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 95.53 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 95.39 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 95.31 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.29 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 95.28 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 95.26 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 95.24 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 95.19 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 95.16 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 95.15 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 95.13 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 95.12 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 95.02 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 94.78 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 94.52 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 94.29 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 94.15 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 94.09 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 94.05 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 93.94 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 93.94 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 93.88 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 93.86 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 93.84 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 93.81 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 93.8 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 93.7 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 93.68 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 93.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 93.63 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 93.49 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 93.34 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 93.22 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 93.22 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 93.08 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 93.07 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 93.02 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 92.98 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 92.93 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 92.92 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 92.87 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 92.83 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 92.76 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 92.75 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 92.61 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 92.54 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 92.52 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 92.52 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 92.51 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 92.4 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 92.34 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 92.33 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 92.33 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 92.3 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 92.29 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 92.29 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 92.29 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 92.22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 92.17 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 92.16 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 92.12 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 92.11 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 92.09 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 92.05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 92.05 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 92.02 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 92.0 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 91.99 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 91.98 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 91.97 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 91.96 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 91.95 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 91.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 91.85 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 91.78 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 91.67 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 91.65 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 91.65 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 91.6 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 91.6 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 91.57 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 91.56 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 91.54 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 91.53 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 91.52 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 91.44 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 91.41 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 91.36 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.34 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 91.32 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 91.29 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 91.22 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.11 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 91.05 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 91.0 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 90.97 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 90.96 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 90.88 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 90.87 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 90.84 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 90.83 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 90.82 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 90.82 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 90.79 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 90.66 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 90.59 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 90.57 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 90.51 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 90.44 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 90.44 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 90.4 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 90.4 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 90.29 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 90.28 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 90.24 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 90.23 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 90.17 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 90.09 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 89.96 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 89.94 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 89.83 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 89.83 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 89.82 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 89.74 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 89.72 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 89.7 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 89.62 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 89.62 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 89.52 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 89.49 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 89.48 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 89.43 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 89.41 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 89.4 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 89.37 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 89.34 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 89.34 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 89.31 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 89.27 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 89.19 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 89.14 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 89.07 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 89.05 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 89.01 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 88.99 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 88.91 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 88.87 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 88.79 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 88.77 | |
| 2v4h_A | 110 | NF-kappa-B essential modulator; transcription, met | 88.72 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 88.69 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 88.68 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 88.68 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 88.66 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 88.59 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 88.58 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 88.57 |
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=297.27 Aligned_cols=177 Identities=23% Similarity=0.255 Sum_probs=157.9
Q ss_pred CceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCC---------CCHHHHHHHHHHHHHHhhc-CceEEecCcHHHH
Q 002437 85 NVVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGE---------ASGKSVYEAACLLKSVVKD-RALFLIAERVDIA 154 (921)
Q Consensus 85 ~~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~---------~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla 154 (921)
.+++|+|||+.....++++.+++++++|+++||||+|+ ++..+++++|++++++|+. +++|||||++|+|
T Consensus 29 ~~~lylIt~~~~~~~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~~~lA 108 (243)
T 3o63_A 29 SARLYLCTDARRERGDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDRADIA 108 (243)
T ss_dssp HCCEEEEECCCTTTCCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHH
T ss_pred CCcEEEEECCCcccchHHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCHHHHH
Confidence 34999999987655689999999999999999999999 6799999999999999999 9999999999999
Q ss_pred HhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCC---CCcc-
Q 002437 155 AAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQK---ADVI- 226 (921)
Q Consensus 155 ~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~---~g~~- 226 (921)
.++|||||||++.|++...+|++++ ++ . ++|+||||.+|+.+| ...|+|||++||| ||+. .|++
T Consensus 109 ~~~gAdGVHLg~~dl~~~~~r~~~~---~~-~---~iG~S~ht~~Ea~~A-~~~GaDyI~vgpvf~T~tK~~~~~~gl~~ 180 (243)
T 3o63_A 109 RAAGADVLHLGQRDLPVNVARQILA---PD-T---LIGRSTHDPDQVAAA-AAGDADYFCVGPCWPTPTKPGRAAPGLGL 180 (243)
T ss_dssp HHHTCSEEEECTTSSCHHHHHHHSC---TT-C---EEEEEECSHHHHHHH-HHSSCSEEEECCSSCCCC-----CCCHHH
T ss_pred HHhCCCEEEecCCcCCHHHHHHhhC---CC-C---EEEEeCCCHHHHHHH-hhCCCCEEEEcCccCCCCCCCcchhhHHH
Confidence 9999999999999999999999987 66 3 799999999999999 7999999999998 4442 3454
Q ss_pred hhhhhhc--CCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTN--VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~--~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..++++. .++||||+|||+++|+.+++++||+||||+++.++.
T Consensus 181 l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sai~~a 225 (243)
T 3o63_A 181 VRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSA 225 (243)
T ss_dssp HHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESHHHHTC
T ss_pred HHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 5777776 589999999999999999999999999999888764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-29 Score=300.43 Aligned_cols=293 Identities=23% Similarity=0.305 Sum_probs=228.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcc------------------------
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRC------------------------ 417 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~------------------------ 417 (921)
...++|+|+|.+|+|||||+|+|+|.+++|++..|+|.+++.+.++.....+....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 46899999999999999999999999999999999999988888875432111000
Q ss_pred ---------cccCCCeEEeecCCCcc-cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHH-H
Q 002437 418 ---------ERHPDGQYICYLPSPIL-KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLR-Y 486 (921)
Q Consensus 418 ---------~~~~~g~~~~~~p~~~l-~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~-~ 486 (921)
.......+.+++|++++ .+++||||||+++.. .+...+..++..+|++|||+|++++.+..+..++. .
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-ARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-TCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-hHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 00011234567888877 489999999987543 24567888999999999999999999999988775 5
Q ss_pred hhhcCCeEEEEEeCCCCCCCh----H---HHHHHHHHHH----HHHHHhhC-----CCCCeEEEecccchHHhhcccccc
Q 002437 487 TQQWKKKVVFVLNKSDLYQNA----F---ELEEAISFVK----ENTMKLLN-----IENVTIYPVSARSTLEAKLSVSSA 550 (921)
Q Consensus 487 l~~~~~~vivVlNK~D~~~~~----~---~~~~v~~~~~----~~~~~~~~-----~~~~~v~~vSA~~~l~a~~~~~~~ 550 (921)
+...+.|+++|+||+|+.... + +++.+.+.+. ..+....+ ....++|+|||+.++.++....
T Consensus 226 l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~-- 303 (695)
T 2j69_A 226 IKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP-- 303 (695)
T ss_dssp TTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT--
T ss_pred HHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc--
Confidence 666788999999999986432 1 2333333333 33333332 2345899999999988876544
Q ss_pred cccCcccccccCccccccchHHHHHHHHHhhccCCccchHHHHHhhcCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002437 551 VGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGSSSTGKERMRLKLETPIRIAERLLSSCETLVMKDCQDAKQDLTLANE 630 (921)
Q Consensus 551 ~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~~~~~~e~~~~kl~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 630 (921)
+..+..+||++|++.+.+++. .++.+.++.++...+..++..+...+......+..+....+.
T Consensus 304 -----------~~~~~~~Gi~~L~~~L~~~l~------~~~~~~~l~~~~~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~ 366 (695)
T 2j69_A 304 -----------QADLDGTGFPKFMDSLNTFLT------RERAIAELRQVRTLARLACNHTREAVARRIPLLEQDVNELKK 366 (695)
T ss_dssp -----------TCCCTTSSHHHHHHHHHHHHH------HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHH
T ss_pred -----------hhhhhccCHHHHHHHHHHHHH------HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 245667899999999999998 677788888888888999999888888888777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002437 631 MIDSLKEYVMKMESESISWRRKTLSLIDSTKSRVVKLIESTLQI 674 (921)
Q Consensus 631 ~~~~l~~~~~~l~~~~~~~~~~l~~~i~~~~~~~~~~l~~~l~~ 674 (921)
..++++...++++.....+++.+.+..++....+...+.+.++.
T Consensus 367 ~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~~l~~~i~~ 410 (695)
T 2j69_A 367 RIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLN 410 (695)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889998889999999999999999999999888766
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=299.83 Aligned_cols=177 Identities=14% Similarity=0.202 Sum_probs=156.1
Q ss_pred CceEEEEcCCCCCC--CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCe
Q 002437 85 NVVLQLEPHQVLAG--GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASG 161 (921)
Q Consensus 85 ~~~lylit~~~~~~--~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~G 161 (921)
+++||+|||+.... .++++.+++++++|+++||||+|+.+..++++++++++++|+. +++||||||+|+|.++||||
T Consensus 9 ~~~lYlITd~~~~~~~~~l~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND~~dlA~~~gAdG 88 (540)
T 3nl6_A 9 DYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADG 88 (540)
T ss_dssp CCSEEEEC-CTTCCTTCCHHHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECSCSHHHHHTTCSE
T ss_pred CCCEEEEECchhccCcchHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeCcHHHHHHcCCCE
Confidence 45799999987543 3899999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCC---CCEEEeCCC----CCCCC-----Ccc-hh
Q 002437 162 VLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEG---ADFLVCCFG----EGQKA-----DVI-EN 228 (921)
Q Consensus 162 vHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~g---aDyv~~gpv----Tk~~~-----g~~-~~ 228 (921)
|||||+|++...+|+++| |+ + +||+|||+.+|+.+| .+.| +|||++||| ||+.. |+. .+
T Consensus 89 VHLgq~dl~~~~ar~~lg---~~-~---iiG~S~ht~eea~~A-~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~ 160 (540)
T 3nl6_A 89 IHVGQDDMPIPMIRKLVG---PD-M---VIGWSVGFPEEVDEL-SKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAI 160 (540)
T ss_dssp EEECTTSSCHHHHHHHHC---TT-S---EEEEEECSHHHHHHH-HHTCC--CCEEEESCCSCCCCCC----CCCHHHHHH
T ss_pred EEEChhhcCHHHHHHHhC---CC-C---EEEEECCCHHHHHHH-HHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHH
Confidence 999999999999999987 66 3 799999999999999 8999 999999999 45432 233 34
Q ss_pred hhhhc------CCCCEEEEcCCCccChHHHHH--------cCCcEEEEeeccccc
Q 002437 229 SLFTN------VKIPIFIMNASPLVDVSKFLK--------SGASGFVISLEDLSL 269 (921)
Q Consensus 229 ~~~~~------~~~Pv~aiGGi~~~~~~~~~~--------~Ga~gva~~~a~~~~ 269 (921)
++++. .++||||||||+++|+.++++ +|++||||+++.+..
T Consensus 161 ~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a 215 (540)
T 3nl6_A 161 RVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIAS 215 (540)
T ss_dssp HHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTC
T ss_pred HHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcccccccCceEEEEeHHHhcC
Confidence 44443 589999999999999999998 899999999998864
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=241.93 Aligned_cols=165 Identities=10% Similarity=0.029 Sum_probs=137.2
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
+++|+|||+..+.+. .+.+++++++|+++||||.|+.+..++.+. +.++|+. ++.++|||++++|.++|+|||||
T Consensus 1 m~ly~It~~~~~~~~-~~~~~~a~~~Gv~~v~lr~k~~~~~~~~~~---i~~l~~~~~~~livnd~~~~A~~~gadgvhl 76 (210)
T 3ceu_A 1 MKLIVVTTPTFFVEE-DKIITALFEEGLDILHLRKPETPAMYSERL---LTLIPEKYHRRIVTHEHFYLKEEFNLMGIHL 76 (210)
T ss_dssp CEEEEECCSSCCTTH-HHHHHHHHHTTCCEEEECCSSCCHHHHHHH---HHHSCGGGGGGEEESSCTTHHHHTTCSEEEC
T ss_pred CeEEEEeCcccccCH-HHHHHHHHHCCCCEEEEccCCCCHHHHHHH---HHHHHHHhCCeEEEeCCHHHHHHcCCCEEEE
Confidence 479999998765544 589999999999999999999998877664 5677877 89999999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--CCC----CCcc-hhhhhhc--
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E--GQK----ADVI-ENSLFTN-- 233 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T--k~~----~g~~-~~~~~~~-- 233 (921)
++.+++...+| + . ++|.||||.+|+..| . .||||+++||+ | |+. .|+. .+++++.
T Consensus 77 ~~~~~~~~~~~--------~-~---~ig~s~~t~~e~~~A-~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~ 142 (210)
T 3ceu_A 77 NARNPSEPHDY--------A-G---HVSCSCHSVEEVKNR-K-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKI 142 (210)
T ss_dssp CSSSCSCCTTC--------C-S---EEEEEECSHHHHHTT-G-GGSSEEEECCCC---------CCCCHHHHHHHHHTTC
T ss_pred Ccccccccccc--------C-C---EEEEecCCHHHHHHH-h-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 99998654332 2 2 799999999999999 7 99999999998 4 432 2333 3666766
Q ss_pred CCCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 234 VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 234 ~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.++||||+|||+++|+.+++++|++|||++++...
T Consensus 143 ~~iPviaiGGI~~~nv~~~~~~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 143 IDSKVMALGGINEDNLLEIKDFGFGGAVVLGDLWN 177 (210)
T ss_dssp SSTTEEEESSCCTTTHHHHHHTTCSEEEESHHHHT
T ss_pred CCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHhHc
Confidence 68999999999999999999999999988777654
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=207.97 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=147.3
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
+++|+|||+..+.+.+ ..+++++++|+++||||.|+.+..++.+.++.+.+.|.. . .|++|+++++|.++|+|||||
T Consensus 17 ~~l~~It~~~~~~~~l-~~~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~~~~-~l~v~~~~~~a~~~gad~v~l 94 (221)
T 1yad_A 17 MELHAITDDSKPVEEL-ARIIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKR-KLVMNGRVDIALFSTIHRVQL 94 (221)
T ss_dssp CEEEEECCSCSCHHHH-HHHHHHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTCCGG-GEEEESCHHHHHTTTCCEEEE
T ss_pred ccEEEEECCCcCcchH-HHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcCcCC-eEEEeChHHHHHHcCCCEEEe
Confidence 3899999986655454 558889999999999999999999999999999998866 5 899999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----Ccc-hhhhhhcCCC
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----DVI-ENSLFTNVKI 236 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g~~-~~~~~~~~~~ 236 (921)
++.+.+...+|+.. ++ . ++|+|||+.+++..| ...|+||+++||+ |...+ ++. ..++++..++
T Consensus 95 ~~~~~~~~~~~~~~----~~-~---~ig~sv~t~~~~~~a-~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~ 165 (221)
T 1yad_A 95 PSGSFSPKQIRARF----PH-L---HIGRSVHSLEEAVQA-EKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISI 165 (221)
T ss_dssp CTTSCCHHHHHHHC----TT-C---EEEEEECSHHHHHHH-HHTTCSEEEEECCC----------CHHHHHHHHHHHCCS
T ss_pred CCCccCHHHHHHHC----CC-C---EEEEEcCCHHHHHHH-HhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCC
Confidence 99988888888875 33 3 689999999999999 8999999999998 43332 233 4667767799
Q ss_pred CEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 237 PIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 237 Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
||+++|||+++|+.++.++|++||++.++.+..
T Consensus 166 pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 166 PVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp CEEEESSCCGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred CEEEECCCCHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 999999999999999999999999998887654
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=201.44 Aligned_cols=174 Identities=14% Similarity=0.180 Sum_probs=148.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHH---HHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSV---YEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~---~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
++|+||++..+.+.+.+.++.++++|+++||+|.++.+..++ .+.++.+.++|.. ++.+++|+++++|.++|+|||
T Consensus 19 ~i~~It~~~~~~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~~~~a~~~gad~v 98 (227)
T 2tps_A 19 SVYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGI 98 (227)
T ss_dssp TEEEEECGGGCSSCHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTCSEE
T ss_pred CEEEEECCccccchHHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEcCHHHHHHHcCCCEE
Confidence 799999986544448889999999999999999998887777 7889999999988 899999999999999999999
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC------Ccc-hhhhhhc
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA------DVI-ENSLFTN 233 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~------g~~-~~~~~~~ 233 (921)
|+++.+.+...+|+..| . . ++|+|||+.+++..| ...|+||+++||+ |..+. ++. ..++++.
T Consensus 99 ~l~~~~~~~~~~~~~~g---~-~----~~~~s~~t~~e~~~a-~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~ 169 (227)
T 2tps_A 99 HIGQEDANAKEVRAAIG---D-M----ILGVSAHTMSEVKQA-EEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 169 (227)
T ss_dssp EECTTSSCHHHHHHHHT---T-S----EEEEEECSHHHHHHH-HHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT
T ss_pred EECCCccCHHHHHHhcC---C-c----EEEEecCCHHHHHHH-HhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh
Confidence 99998888777887664 2 2 789999999999888 7899999999998 43322 333 4677777
Q ss_pred CC-CCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 234 VK-IPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 234 ~~-~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+ +||++.|||+++|+.++.++|++||++.++.+..
T Consensus 170 ~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 170 GISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQA 206 (227)
T ss_dssp TCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhHHhhcC
Confidence 77 9999999999999999999999999998877653
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-20 Score=190.09 Aligned_cols=172 Identities=24% Similarity=0.393 Sum_probs=148.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLS 165 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~ 165 (921)
++|+|||+. +. ++.+.++.++++|+++|++|.|+.+..++.+.++.+.++|.. ++.+++|+++++|.++|+||||++
T Consensus 16 ~l~~It~~~-~~-~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~~~~a~~~gad~v~l~ 93 (215)
T 1xi3_A 16 KLYVITDRR-LK-PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQLG 93 (215)
T ss_dssp SEEEECCTT-TS-CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEEC
T ss_pred CEEEEECCc-hh-hHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEcChHHHHHHcCCCEEEEC
Confidence 799999987 55 888999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred CCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCCC-----cc-hhhhhhcCCCC
Q 002437 166 DQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKAD-----VI-ENSLFTNVKIP 237 (921)
Q Consensus 166 ~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g-----~~-~~~~~~~~~~P 237 (921)
..+++...++++. ++ . ++|++||+.+++..+ ...|+||++++|+ |..++| +. ..++++..++|
T Consensus 94 ~~~~~~~~~~~~~----~~-~---~~~v~~~t~~e~~~~-~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p 164 (215)
T 1xi3_A 94 PEDMPIEVAKEIA----PN-L---IIGASVYSLEEALEA-EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIP 164 (215)
T ss_dssp TTSCCHHHHHHHC----TT-S---EEEEEESSHHHHHHH-HHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSC
T ss_pred CccCCHHHHHHhC----CC-C---EEEEecCCHHHHHHH-HhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCC
Confidence 9888888888874 33 2 689999999999888 7899999999986 322222 22 35666677999
Q ss_pred EEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 238 IFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 238 v~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|++.|||+++|+.++.++|++||++.++.+..
T Consensus 165 via~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 165 VVAIGGINKDNAREVLKTGVDGIAVISAVMGA 196 (215)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEEESHHHHTS
T ss_pred EEEECCcCHHHHHHHHHcCCCEEEEhHHHhCC
Confidence 99999999999999999999999988877654
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=185.20 Aligned_cols=168 Identities=13% Similarity=-0.040 Sum_probs=142.7
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
.+++.|.+.. +.+++.+.+++++++|+++||+|.|..+..+.++.+++ ..+|.. |. +++||++|+|.+.||||||+
T Consensus 13 ~~ii~vi~~~-~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~-~~~~~gag~-vl~~d~~~~A~~~GAd~v~~ 89 (207)
T 2yw3_A 13 SRLLPLLTVR-GGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRK-SGLLLGAGT-VRSPKEAEAALEAGAAFLVS 89 (207)
T ss_dssp HCEEEEECCC-SCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTT-SSCEEEEES-CCSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhC-CCCEEEeCe-EeeHHHHHHHHHcCCCEEEc
Confidence 3577777653 34578899999999999999999999988888888888 888887 77 77999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEE
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIM 241 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~ai 241 (921)
++.+.+...+++..| .+ . ++| |||++|+.+| .+.|+||+.+-|- ... |+. .+.++... ++|++|+
T Consensus 90 ~~~d~~v~~~~~~~g---~~-~---i~G--~~t~~e~~~A-~~~Gad~v~~fpa--~~~gG~~~lk~l~~~~~~ipvvai 157 (207)
T 2yw3_A 90 PGLLEEVAALAQARG---VP-Y---LPG--VLTPTEVERA-LALGLSALKFFPA--EPFQGVRVLRAYAEVFPEVRFLPT 157 (207)
T ss_dssp SSCCHHHHHHHHHHT---CC-E---EEE--ECSHHHHHHH-HHTTCCEEEETTT--TTTTHHHHHHHHHHHCTTCEEEEB
T ss_pred CCCCHHHHHHHHHhC---CC-E---Eec--CCCHHHHHHH-HHCCCCEEEEecC--ccccCHHHHHHHHhhCCCCcEEEe
Confidence 998888777776666 44 2 456 8999999999 8999999999662 334 555 57777777 7999999
Q ss_pred cCCCccChHHHHHcCCcEEEEeecccc
Q 002437 242 NASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 242 GGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|||+++|+.+++++|++||+++++.+.
T Consensus 158 GGI~~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 158 GGIKEEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp SSCCGGGHHHHHTCSSBSCEEESGGGS
T ss_pred CCCCHHHHHHHHhCCCcEEEEehhhhC
Confidence 999999999999999999999998876
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=173.57 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=123.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC-CCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR-YLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~-~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+|+|.+|+|||||+|+|++.+ +... ...++|..+......... + ..+.||
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~------------~-----------~~~~l~ 84 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA------------E-----------PVAHLV 84 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT------------S-----------CSEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC------------C-----------CcEEEE
Confidence 46899999999999999999999987 3333 333455544443332110 1 258999
Q ss_pred eCCCCChh------hhHHHHHHHHhcCC---CCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 441 DTPGTNVI------LQRQQRLTEEFVPR---ADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 441 DTPG~~~~------~~~~~~~~~~~l~~---aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
||||++.. .+.+...+..++.. +|++|||+|++++.+..+..++..+...+.|+++|+||+|+... .+..
T Consensus 85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~-~~~~ 163 (223)
T 4dhe_A 85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTR-QESI 163 (223)
T ss_dssp ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCH-HHHH
T ss_pred cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCCh-hhHH
Confidence 99998543 23445556666644 88899999999999999999999998889999999999999853 4445
Q ss_pred HHHHHHHHHHHHhhC---CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 512 EAISFVKENTMKLLN---IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...+.+.+.+..... ....+++++||+.+ .|++++.+.|.+.+..
T Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g---------------------------~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 164 NALRATQKSLDAYRDAGYAGKLTVQLFSALKR---------------------------TGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTT---------------------------BSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhhcccCCCCeEEEeecCCC---------------------------cCHHHHHHHHHHhcCc
Confidence 555555555554311 24578999999987 7999999999888764
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=176.70 Aligned_cols=168 Identities=8% Similarity=-0.022 Sum_probs=137.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHH-HHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYE-AACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~-~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
++..|.+.. +..++++.+++++++|+++||+|.|+.+..+.++ +++++..+|.. |. +++||++++|.+.||||||+
T Consensus 17 ~~i~v~r~~-~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aGAd~v~~ 94 (214)
T 1wbh_A 17 PVVPVIVVK-KLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAGAQFAIS 94 (214)
T ss_dssp SEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHTCSCEEE
T ss_pred CEEEEEECC-CHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcCCCEEEc
Confidence 466666653 2447889999999999999999999988777555 45555566666 66 89999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEE
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIM 241 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~ai 241 (921)
|+.+.+...+++..| .+ . ++| |||++|+.+| .+.|+||+.+=|- ... |+. .++++... ++|++++
T Consensus 95 p~~d~~v~~~~~~~g---~~-~---i~G--~~t~~e~~~A-~~~Gad~v~~Fpa--~~~gG~~~lk~i~~~~~~ipvvai 162 (214)
T 1wbh_A 95 PGLTEPLLKAATEGT---IP-L---IPG--ISTVSELMLG-MDYGLKEFKFFPA--EANGGVKALQAIAGPFSQVRFCPT 162 (214)
T ss_dssp SSCCHHHHHHHHHSS---SC-E---EEE--ESSHHHHHHH-HHTTCCEEEETTT--TTTTHHHHHHHHHTTCTTCEEEEB
T ss_pred CCCCHHHHHHHHHhC---CC-E---EEe--cCCHHHHHHH-HHCCCCEEEEecC--ccccCHHHHHHHhhhCCCCeEEEE
Confidence 999998888888776 45 2 457 8999999999 8999999999542 233 455 57788777 7999999
Q ss_pred cCCCccChHHHHHc-CCcEEEEeeccccc
Q 002437 242 NASPLVDVSKFLKS-GASGFVISLEDLSL 269 (921)
Q Consensus 242 GGi~~~~~~~~~~~-Ga~gva~~~a~~~~ 269 (921)
|||+++|+.+++++ |+.+|+ +++..+.
T Consensus 163 GGI~~~n~~~~l~agg~~~v~-gS~i~~~ 190 (214)
T 1wbh_A 163 GGISPANYRDYLALKSVLCIG-GSWLVPA 190 (214)
T ss_dssp SSCCTTTHHHHHTSTTBSCEE-EGGGSCH
T ss_pred CCCCHHHHHHHHhcCCCeEEE-eccccCh
Confidence 99999999999999 999998 7777654
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=178.60 Aligned_cols=168 Identities=11% Similarity=-0.019 Sum_probs=136.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHH-HHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYE-AACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~-~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
+++.|.... +..++++.+++++++|+++||+|.|+.+..+.++ +++++..+|.. |. +++||++++|.+.||||||+
T Consensus 27 ~ii~V~r~~-~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagt-vl~~d~~~~A~~aGAd~v~~ 104 (225)
T 1mxs_A 27 RILPVITIA-REEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGT-VLDRSMFAAVEAAGAQFVVT 104 (225)
T ss_dssp SEEEEECCS-CGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEEC-CCSHHHHHHHHHHTCSSEEC
T ss_pred CEEEEEeCC-CHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCe-EeeHHHHHHHHHCCCCEEEe
Confidence 577776543 3447889999999999999999999887766555 45555566766 66 67999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEEE
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFIM 241 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~ai 241 (921)
|+.|.+...+++..| .+ . ++| ||+++|+.+| .+.|+||+.+=|- ... |+. .+.++... ++|++++
T Consensus 105 p~~d~~v~~~~~~~g---~~-~---i~G--~~t~~e~~~A-~~~Gad~vk~FPa--~~~~G~~~lk~i~~~~~~ipvvai 172 (225)
T 1mxs_A 105 PGITEDILEAGVDSE---IP-L---LPG--ISTPSEIMMG-YALGYRRFKLFPA--EISGGVAAIKAFGGPFGDIRFCPT 172 (225)
T ss_dssp SSCCHHHHHHHHHCS---SC-E---ECE--ECSHHHHHHH-HTTTCCEEEETTH--HHHTHHHHHHHHHTTTTTCEEEEB
T ss_pred CCCCHHHHHHHHHhC---CC-E---EEe--eCCHHHHHHH-HHCCCCEEEEccC--ccccCHHHHHHHHhhCCCCeEEEE
Confidence 999998888888776 45 2 457 8999999999 8999999999441 122 455 57787777 7999999
Q ss_pred cCCCccChHHHHH-cCCcEEEEeeccccc
Q 002437 242 NASPLVDVSKFLK-SGASGFVISLEDLSL 269 (921)
Q Consensus 242 GGi~~~~~~~~~~-~Ga~gva~~~a~~~~ 269 (921)
|||+++|+.++++ .|+.+|+ +++..+.
T Consensus 173 GGI~~~N~~~~l~~~Ga~~v~-gSai~~~ 200 (225)
T 1mxs_A 173 GGVNPANVRNYMALPNVMCVG-TTWMLDS 200 (225)
T ss_dssp SSCCTTTHHHHHHSTTBCCEE-ECTTSCH
T ss_pred CCCCHHHHHHHHhccCCEEEE-EchhcCc
Confidence 9999999999999 7999999 8888653
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=179.91 Aligned_cols=166 Identities=25% Similarity=0.292 Sum_probs=123.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+-.|+++|.+|+|||||+|+|+|.++...+..+ ||.......+... .+ ..++||||
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~------------~~-----------~~i~lvDT 66 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP------------NE-----------AQIIFLDT 66 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET------------TT-----------EEEEEEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC------------CC-----------CeEEEEEC
Confidence 458999999999999999999999887654444 4433222211111 01 25899999
Q ss_pred CCCChh------hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHH-HHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 443 PGTNVI------LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVF-LRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 443 PG~~~~------~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~-l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||+... .+.+...+..++..+|++|||+|++++.+..+..+ +..+...+.|+++|+||+|+..+.+...+..+
T Consensus 67 PG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~ 146 (308)
T 3iev_A 67 PGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLID 146 (308)
T ss_dssp CCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHH
T ss_pred cCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHH
Confidence 999532 35566677888999999999999999988888887 88888888999999999999844344444444
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.+.+. ++ ...+++++||+++ .|+++|.+.+.+.+.+.
T Consensus 147 ~l~~~----~~-~~~~i~~vSA~~g---------------------------~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 147 EIHKK----HP-ELTEIVPISALKG---------------------------ANLDELVKTILKYLPEG 183 (308)
T ss_dssp HHHHH----CT-TCCCEEECBTTTT---------------------------BSHHHHHHHHHHHSCBC
T ss_pred HHHHh----cc-CCCeEEEEeCCCC---------------------------CCHHHHHHHHHHhCccC
Confidence 44332 22 2468999999987 79999999999988754
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=189.08 Aligned_cols=172 Identities=21% Similarity=0.291 Sum_probs=120.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchh------------------------hcc-
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQ------------------------QRC- 417 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~------------------------~~~- 417 (921)
..|.|+|+|.+|+|||||+|+|+|.+++|.+..++|.+++.+.....+.... ...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 5789999999999999999999999999999999999887776533221000 000
Q ss_pred ---cccCCCeEEeecCCCcccccEEEeCCCCChhh---------hHHHHHHHHhc-CCCCEEEEEEeCCCCCCHHHH-HH
Q 002437 418 ---ERHPDGQYICYLPSPILKEMIIVDTPGTNVIL---------QRQQRLTEEFV-PRADLVLFVISADRPLTESEV-VF 483 (921)
Q Consensus 418 ---~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~---------~~~~~~~~~~l-~~aD~il~V~da~~~~t~~e~-~~ 483 (921)
.......+...+..|...+++||||||+.... .....++..|+ ..+|+||+|+|++.+.+..+. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00111223333444555689999999997521 34556777777 689999999999988776666 78
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh--CCCCCeEEEecccch
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL--NIENVTIYPVSARST 540 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~v~~vSA~~~ 540 (921)
+..+...+.|+|+|+||+|+.........+. . ...+ .....+|+++||+.+
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~~~~~~~il---~---~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDEGTDARDVL---E---NKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCTTCCSHHHH---T---TCSSCCSSCEEECCCCCCEES
T ss_pred HHHHHhcCCCEEEEEeCcccCCcchhhHHHH---H---HHhhhhhccCCceEEeccccc
Confidence 8999988999999999999986532221111 1 1111 112357899999886
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=160.14 Aligned_cols=162 Identities=23% Similarity=0.330 Sum_probs=116.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.+.......+ +|......... ..+.+||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~i~D 74 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN---------------------------SKYYFVD 74 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET---------------------------TTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC---------------------------CcEEEEE
Confidence 4579999999999999999999998754433332 23322222111 2488999
Q ss_pred CCCCChh------hhHHHHHHHHhcCC---CCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 442 TPGTNVI------LQRQQRLTEEFVPR---ADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 442 TPG~~~~------~~~~~~~~~~~l~~---aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
|||++.. ...+...+..++.. +|++++|+|++.+.+..+..++..+...+.|+++|+||+|+... ++.+.
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~~ 153 (195)
T 3pqc_A 75 LPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM-SERAK 153 (195)
T ss_dssp CCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG-GGHHH
T ss_pred CCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh-HHHHH
Confidence 9997432 23344555566544 49999999999888888888888888889999999999999854 44444
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+.+...+... ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 154 ~~~~~~~~~~~~---~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 154 KLEEHRKVFSKY---GEYTIIPTSSVTG---------------------------EGISELLDLISTLLK 193 (195)
T ss_dssp HHHHHHHHHHSS---CCSCEEECCTTTC---------------------------TTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc---CCCceEEEecCCC---------------------------CCHHHHHHHHHHHhh
Confidence 444444433321 3468999999987 689999988887765
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=160.97 Aligned_cols=161 Identities=17% Similarity=0.257 Sum_probs=111.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+|+|.+|+|||||+|+|++..+.+ .... .+|.....+... ..+.+|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~l~ 74 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---------------------------DELHFV 74 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---------------------------TTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC---------------------------CcEEEE
Confidence 57899999999999999999999986332 2222 223322222111 248999
Q ss_pred eCCCCChh------hhHHHHHHHHhcCCC---CEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 441 DTPGTNVI------LQRQQRLTEEFVPRA---DLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 441 DTPG~~~~------~~~~~~~~~~~l~~a---D~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
||||++.. .+.+...+..++..+ |++++|+|++++.+..+..++..+...+.|+++|+||+|+... .+..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~ 153 (195)
T 1svi_A 75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK-GKWD 153 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG-GGHH
T ss_pred ECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-HHHH
Confidence 99997533 344455666776655 9999999999999988888888888888999999999999854 3344
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...+.+.+.+. .....+++++||+.+ .|++++.+.+.+.+
T Consensus 154 ~~~~~~~~~~~---~~~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~l 193 (195)
T 1svi_A 154 KHAKVVRQTLN---IDPEDELILFSSETK---------------------------KGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHHHHHHHT---CCTTSEEEECCTTTC---------------------------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---ccCCCceEEEEccCC---------------------------CCHHHHHHHHHHHh
Confidence 44344443332 123578999999886 68888888887655
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=171.64 Aligned_cols=166 Identities=13% Similarity=0.041 Sum_probs=131.7
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHH-HHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYE-AACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~-~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
++..|.-.. +..++++.+++++++|+++||+|.|+.+..+.++ +++++..+|.. |. +++||++++|.+.||||||+
T Consensus 18 ~ii~vir~~-~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGt-vl~~d~~~~A~~aGAd~v~~ 95 (224)
T 1vhc_A 18 KIVPVIALD-NADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGT-VLTAEQVVLAKSSGADFVVT 95 (224)
T ss_dssp CEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEES-CCSHHHHHHHHHHTCSEEEC
T ss_pred CeEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCc-EeeHHHHHHHHHCCCCEEEE
Confidence 344444332 2347889999999999999999999988776554 55555566665 66 55999999999999999999
Q ss_pred CCCCCCH-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEEE
Q 002437 165 SDQGLPA-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIFI 240 (921)
Q Consensus 165 ~~~~l~~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~a 240 (921)
++.|.+. ..+|. .| +. . ++| |||+.|+.+| .+.|+||+.+=| .... |+. .++++... ++|+++
T Consensus 96 p~~d~~v~~~ar~-~g---~~-~---i~G--v~t~~e~~~A-~~~Gad~vk~Fp--a~~~gG~~~lk~l~~~~~~ipvva 162 (224)
T 1vhc_A 96 PGLNPKIVKLCQD-LN---FP-I---TPG--VNNPMAIEIA-LEMGISAVKFFP--AEASGGVKMIKALLGPYAQLQIMP 162 (224)
T ss_dssp SSCCHHHHHHHHH-TT---CC-E---ECE--ECSHHHHHHH-HHTTCCEEEETT--TTTTTHHHHHHHHHTTTTTCEEEE
T ss_pred CCCCHHHHHHHHH-hC---CC-E---Eec--cCCHHHHHHH-HHCCCCEEEEee--CccccCHHHHHHHHhhCCCCeEEE
Confidence 9999884 56666 65 44 3 567 8899999999 899999999954 2233 455 57788877 799999
Q ss_pred EcCCCccChHHHHHc-CCcEEEEeecccc
Q 002437 241 MNASPLVDVSKFLKS-GASGFVISLEDLS 268 (921)
Q Consensus 241 iGGi~~~~~~~~~~~-Ga~gva~~~a~~~ 268 (921)
+|||+++|+.+++++ |+.+|+ +++..+
T Consensus 163 iGGI~~~N~~~~l~agga~~v~-gS~i~~ 190 (224)
T 1vhc_A 163 TGGIGLHNIRDYLAIPNIVACG-GSWFVE 190 (224)
T ss_dssp BSSCCTTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred ECCcCHHHHHHHHhcCCCEEEE-EchhcC
Confidence 999999999999999 999998 777765
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=171.83 Aligned_cols=160 Identities=23% Similarity=0.269 Sum_probs=115.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
...|+++|.+|+|||||+|+|+|.++...+..| ||.......+.. .+ ..+.||||
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-------------~~-----------~~l~l~DT 62 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-------------GR-----------RQIVFVDT 62 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-------------TT-----------EEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-------------CC-----------cEEEEecC
Confidence 357999999999999999999999887654444 443221111100 01 14899999
Q ss_pred CCCChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 443 PGTNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 443 PG~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||+... .+.....+..++..+|++|||+|++++.+..+..+++.+... +.|+++|+||+|+.....+ +.+.
T Consensus 63 pG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~---~~~~ 139 (301)
T 1wf3_A 63 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE---AMKA 139 (301)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH---HHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH---HHHH
Confidence 998642 223456677889999999999999998888887777888876 8999999999999865321 2222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+ ..+ ....+++++||+++ .|++.|.+.+.+.+.+
T Consensus 140 ~----~~~--~~~~~~~~iSA~~g---------------------------~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 140 Y----HEL--LPEAEPRMLSALDE---------------------------RQVAELKADLLALMPE 173 (301)
T ss_dssp H----HHT--STTSEEEECCTTCH---------------------------HHHHHHHHHHHTTCCB
T ss_pred H----HHh--cCcCcEEEEeCCCC---------------------------CCHHHHHHHHHHhccc
Confidence 2 222 23457999999987 6788888888877653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-17 Score=180.00 Aligned_cols=324 Identities=15% Similarity=0.102 Sum_probs=158.0
Q ss_pred EEecCCHHHHHcccccCCCCEEEeCCCC---CCCC----Ccc-hhhhhhcCCCCEEEE-cCCCccChHHHHH-cCCcEEE
Q 002437 192 GRNVQTLDAAFNASSSEGADFLVCCFGE---GQKA----DVI-ENSLFTNVKIPIFIM-NASPLVDVSKFLK-SGASGFV 261 (921)
Q Consensus 192 g~S~h~~~e~~~A~~~~gaDyv~~gpvT---k~~~----g~~-~~~~~~~~~~Pv~ai-GGi~~~~~~~~~~-~Ga~gva 261 (921)
-.+-.+++|+..-+... .|-+++.++ ++++ |-+ ..++......-++.. +-++|.....+.+ .|+.-|.
T Consensus 7 ~~~~~~~~e~~~l~~~~--~~~~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q~~~l~~~~~~~~v~ 84 (364)
T 2qtf_A 7 FVSKEFEEEAIALVEGA--NYKVTSIYKLPKSPNVKFYIQYDKLQQIKNDEEISTLIIFEQLKPRHFINIRRELKGKEVL 84 (364)
T ss_dssp ECCTTTHHHHHHHHHHT--TEEEEEEECCCSSCBTTTBSCHHHHHHHHTCTTCCEEEESSCCCHHHHHHHHHHHTTCEEE
T ss_pred eCcHHHHHHHHHHHHHC--CCEEEEEEEEccCCCCcceechhHHHHHhhccCCCEEEECCCCCHHHHHHHHHHhCCCcee
Confidence 34456788876432444 455555551 3333 333 355555334443333 4455554443332 1220110
Q ss_pred EeecccccchHHHHHhhhcccCCCcc-c-ccccccccccccccCCCCcccchhhccccCCCchHHHHHHHHHHHHHHHHH
Q 002437 262 ISLEDLSLFNDGVLSQMFCANGTTNE-K-TDRGEDVSNVKLLDTSNSFFGKERVAGFVKFEDREKQLIETERSVLLEAID 339 (921)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~ 339 (921)
=.-+++=.+|+....+.. + +..++++.+..... ..+....+..+.+++.|+++..++..++.+.+.+.
T Consensus 85 --------dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl--~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~~~~i~ 154 (364)
T 2qtf_A 85 --------DKILLLLEIFALHAGSKEAKMQIELARLKYELPII--KETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRIN 154 (364)
T ss_dssp --------CHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--HHC---------------------CHHHHHHHHHH
T ss_pred --------ehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh--hhhhHHHHhcCCCCcCCcCHHHHHHHHHHHHHHHH
Confidence 011122233333222222 2 56666666555443 24455566677888888888888888888888887
Q ss_pred HHHhhCccHHHHHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccc
Q 002437 340 VIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCER 419 (921)
Q Consensus 340 ~l~~~~~~~~~~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~ 419 (921)
.+++....+...+...+........+.|+++|.+|+|||||+|+|+|......+...+|.+++......
T Consensus 155 ~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~----------- 223 (364)
T 2qtf_A 155 KLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI----------- 223 (364)
T ss_dssp HHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-----------
Confidence 777654333322222221111223456999999999999999999998764445555554433221110
Q ss_pred cCCCeEEeecCCCcccccEEEeCCCCChh-----hhHHHHHHHHhcCCCCEEEEEEeCCCCC--CHHHH----HHHHHhh
Q 002437 420 HPDGQYICYLPSPILKEMIIVDTPGTNVI-----LQRQQRLTEEFVPRADLVLFVISADRPL--TESEV----VFLRYTQ 488 (921)
Q Consensus 420 ~~~g~~~~~~p~~~l~~l~lvDTPG~~~~-----~~~~~~~~~~~l~~aD~il~V~da~~~~--t~~e~----~~l~~l~ 488 (921)
+| ..+.++||||+... .+. ...+...+..+|++++|+|++++. ..... +++..+.
T Consensus 224 --~g-----------~~v~l~DT~G~i~~lp~~lve~-f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~ 289 (364)
T 2qtf_A 224 --NN-----------RKIMLVDTVGFIRGIPPQIVDA-FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG 289 (364)
T ss_dssp --TT-----------EEEEEEECCCBCSSCCGGGHHH-HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred --CC-----------EEEEEEeCCCchhcCCHHHHHH-HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence 11 14789999997321 122 234566789999999999998764 22222 2344443
Q ss_pred hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCcccccc
Q 002437 489 QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRIN 568 (921)
Q Consensus 489 ~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~s 568 (921)
..+.|+++|.||+|+.... ..+........... +....++++++||+++ .
T Consensus 290 ~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~l~~~-l~~~~~~~~~~SA~~g---------------------------~ 339 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKINGD--LYKKLDLVEKLSKE-LYSPIFDVIPISALKR---------------------------T 339 (364)
T ss_dssp CCSCCEEEEEECGGGCCSC--HHHHHHHHHHHHHH-HCSCEEEEEECBTTTT---------------------------B
T ss_pred cCCCCEEEEEECCCCCCch--HHHHHHHHHHHHHH-hcCCCCcEEEEECCCC---------------------------c
Confidence 3568999999999998542 11211222111122 2112357899999987 7
Q ss_pred chHHHHHHHHHhhc
Q 002437 569 TFDKLEKLLYSFLD 582 (921)
Q Consensus 569 g~~~L~~~l~~~l~ 582 (921)
|++.|.+.|.+.+.
T Consensus 340 gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 340 NLELLRDKIYQLAT 353 (364)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 89999998888765
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.8e-17 Score=185.18 Aligned_cols=158 Identities=22% Similarity=0.217 Sum_probs=94.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++.+... ....+||..+....+.. +| ..+.||
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-------------~g-----------~~l~li 286 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-------------DK-----------TMFRLT 286 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-------------TT-----------EEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-------------CC-----------eEEEEE
Confidence 356899999999999999999999986543 33444555433221111 11 148999
Q ss_pred eCCCCChhhhHHH----HHHHHhcCCCCEEEEEEeCCCCCCH----HHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 441 DTPGTNVILQRQQ----RLTEEFVPRADLVLFVISADRPLTE----SEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 441 DTPG~~~~~~~~~----~~~~~~l~~aD~il~V~da~~~~t~----~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
||||+........ ..+..++..+|++|||+|++++.+. ....++..+. +.|+++|+||+|+...... ..
T Consensus 287 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~-~~ 363 (476)
T 3gee_A 287 DTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA-LI 363 (476)
T ss_dssp C--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH-HH
T ss_pred ECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch-hH
Confidence 9999854322111 3356678999999999999998877 5566777666 6899999999999865321 11
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+ .+... + ..+++++||+++ .|+++|.+.+.+.+.
T Consensus 364 --~----~l~~~-~--~~~~i~vSAktg---------------------------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 364 --R----AIADG-T--GTEVIGISALNG---------------------------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp --H----HHHHH-H--TSCEEECBTTTT---------------------------BSHHHHHHHHTHHHH
T ss_pred --H----HHHhc-C--CCceEEEEECCC---------------------------CCHHHHHHHHHHHHh
Confidence 1 12221 1 257999999987 799999999988876
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=173.12 Aligned_cols=155 Identities=21% Similarity=0.227 Sum_probs=112.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|+|.+.......++|.......+... + ..+.||||||
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~-------------~-----------~~~~lvDtpG 57 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG-------------E-----------HLIEITDLPG 57 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET-------------T-----------EEEEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC-------------C-----------eEEEEEeCCC
Confidence 589999999999999999999987655555555554443322211 1 1489999999
Q ss_pred CChhh------hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 445 TNVIL------QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 445 ~~~~~------~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
+.+.. ...+.++..++ ..+|++|+|+|+++. .....++.++.+.+.|+++|+||+|+.... .......
T Consensus 58 ~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~-~~~~~~~- 133 (256)
T 3iby_A 58 VYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHR-GISIDTE- 133 (256)
T ss_dssp CSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHT-TCEECHH-
T ss_pred cccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcC-CcHHHHH-
Confidence 97654 34455777888 999999999999873 566677888888899999999999985321 1111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
.+...++ .+++++||+.+ .|+++|.+.+.+.
T Consensus 134 ---~l~~~lg---~~vi~~SA~~g---------------------------~gi~el~~~i~~~ 164 (256)
T 3iby_A 134 ---KLESLLG---CSVIPIQAHKN---------------------------IGIPALQQSLLHC 164 (256)
T ss_dssp ---HHHHHHC---SCEEECBGGGT---------------------------BSHHHHHHHHHTC
T ss_pred ---HHHHHcC---CCEEEEECCCC---------------------------CCHHHHHHHHHhh
Confidence 1223333 68999999987 6899999888877
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=163.11 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=106.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.......+|..+....+... + ..+.||||
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~-------------~-----------~~~~l~Dt 83 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK-------------L-----------NKYQIIDT 83 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET-------------T-----------EEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC-------------C-----------CeEEEEEC
Confidence 46899999999999999999999987654444444544333221110 0 14899999
Q ss_pred CCCChhh--hH---HHHHHHHhcCCCCEEEEEEeCCCCCC---HHHHHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHH
Q 002437 443 PGTNVIL--QR---QQRLTEEFVPRADLVLFVISADRPLT---ESEVVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 443 PG~~~~~--~~---~~~~~~~~l~~aD~il~V~da~~~~t---~~e~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~ 512 (921)
||+.... +. .......+...+|++|||+|++++.+ .....++..+... +.|+++|+||+|+.....-..+
T Consensus 84 pG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~ 163 (228)
T 2qu8_A 84 PGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSID 163 (228)
T ss_dssp TTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHH
T ss_pred CCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHH
Confidence 9984321 11 12234456788999999999987654 3345677777665 7899999999999754211111
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
....... +....+ ...+++++||+++ .|++++.+.+.+.+.
T Consensus 164 ~~~~~~~-~~~~~~-~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 164 NKLLIKQ-ILDNVK-NPIKFSSFSTLTG---------------------------VGVEQAKITACELLK 204 (228)
T ss_dssp HHHHHHH-HHHHCC-SCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhcC-CCceEEEEecccC---------------------------CCHHHHHHHHHHHHH
Confidence 1111111 111111 1268999999987 688898888887765
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=167.15 Aligned_cols=193 Identities=19% Similarity=0.282 Sum_probs=115.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccc------hhh---------------------
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASE------EQQ--------------------- 415 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~------~~~--------------------- 415 (921)
..+.|+|+|.+|+|||||+|+|+|.+++|.+...+|..++.+.....+.. ...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 56899999999999999999999999988887777776643322221000 000
Q ss_pred -----ccc----ccCCCeEEeecCCCcccccEEEeCCCCCh---------hhhHHHHHHHHhcCCCCEEEEEEeC-CCCC
Q 002437 416 -----RCE----RHPDGQYICYLPSPILKEMIIVDTPGTNV---------ILQRQQRLTEEFVPRADLVLFVISA-DRPL 476 (921)
Q Consensus 416 -----~~~----~~~~g~~~~~~p~~~l~~l~lvDTPG~~~---------~~~~~~~~~~~~l~~aD~il~V~da-~~~~ 476 (921)
+.. ......+.+.+..+...+++||||||+.. ........+..++..+|++++|+|+ +...
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000 00001111111222234799999999863 1234667788899999999999996 5454
Q ss_pred CHHH-HHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCc
Q 002437 477 TESE-VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDH 555 (921)
Q Consensus 477 t~~e-~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~ 555 (921)
+..+ ..++..+...+.|+++|+||+|+...... ..+.+. ..+......++++|+..+....
T Consensus 183 ~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~---~~~~~~----~~~~~~~~~~~~v~~~sa~~~~----------- 244 (315)
T 1jwy_B 183 ANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD---AMEVLT----GRVIPLTLGFIGVINRSQEDII----------- 244 (315)
T ss_dssp TTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC---CHHHHT----TSSSCCTTCEEECCCCCHHHHS-----------
T ss_pred hhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH---HHHHHh----CCCccCCCCeEEEecCChhhhc-----------
Confidence 4333 46778888888999999999999865321 112221 1111122567888887763211
Q ss_pred ccccccCccccccchHHHHHHHHHhhcc
Q 002437 556 SELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 556 ~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...|+.++.+.+.+++..
T Consensus 245 ----------~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 245 ----------AKKSIRESLKSEILYFKN 262 (315)
T ss_dssp ----------SSCCHHHHHHHHHHHHHT
T ss_pred ----------cCCCHHHHHHHHHHHHhC
Confidence 025788888888887764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-16 Score=151.20 Aligned_cols=155 Identities=25% Similarity=0.270 Sum_probs=106.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|.+........ .++|.......... ++ ..+.++|||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~l~Dt~ 57 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-------------DR-----------GRFLLVDTG 57 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-------------TT-----------EEEEEEECG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-------------CC-----------ceEEEEECC
Confidence 689999999999999999999887543222 23333222221111 11 148899999
Q ss_pred CCChh---hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 444 GTNVI---LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 444 G~~~~---~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|.... .......+..++..+|++++|+|++++.+..+..+...+...+.|+++|+||+|+....++
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------- 126 (161)
T 2dyk_A 58 GLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELY----------- 126 (161)
T ss_dssp GGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGG-----------
T ss_pred CCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHh-----------
Confidence 98642 2334566778899999999999999988888777777777788999999999999754211
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
..++......+++++||+.+ .|++++.+.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 127 LGPLYGLGFGDPIPTSSEHA---------------------------RGLEELLEAIWERL 160 (161)
T ss_dssp CGGGGGGSSCSCEECBTTTT---------------------------BSHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCeEEEecccC---------------------------CChHHHHHHHHHhC
Confidence 11111112237899999987 68888888876653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=155.35 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=109.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+......||+. .....+.. .+ ..+.||||
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~~~~~-------------~~-----------~~~~i~Dt 70 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVETFEK-------------GR-----------VAFTVFDM 70 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEEEEEE-------------TT-----------EEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEEEEEe-------------CC-----------EEEEEEEC
Confidence 5689999999999999999999998876544555554 22221110 00 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc-----------CCeEEEEEeCCCCCCChHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW-----------KKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~-----------~~~vivVlNK~D~~~~~~~~ 510 (921)
||.. .+...+..++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+... ...
T Consensus 71 ~G~~----~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~ 145 (199)
T 4bas_A 71 GGAK----KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA-KTA 145 (199)
T ss_dssp CCSG----GGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC-CCH
T ss_pred CCCH----hHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC-CCH
Confidence 9984 3345567889999999999999987665544 445544332 7899999999999865 222
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+++.+.+.. .........+++++||+++ .|++++.+.|.+.+.
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 146 AELVEILDL--TTLMGDHPFVIFASNGLKG---------------------------TGVHEGFSWLQETAS 188 (199)
T ss_dssp HHHHHHHTH--HHHHTTSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--hhhccCCeeEEEEeeCCCc---------------------------cCHHHHHHHHHHHHH
Confidence 333333221 1111234578999999987 688888888877665
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-16 Score=156.69 Aligned_cols=163 Identities=17% Similarity=0.275 Sum_probs=111.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|+|++..+.+.....+|..+....+.. ++ ..+.+||
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~l~D 61 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-------------ND-----------KKITFLD 61 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-------------TT-----------EEEEESC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-------------CC-----------ceEEEEE
Confidence 46789999999999999999999998776443333332221111100 11 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||..... .....++..+|++|+|+|++++......+.+..+...+.|+++|+||+|+.... .+++...+.. .
T Consensus 62 t~G~~~~~----~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~-~ 134 (178)
T 2lkc_A 62 TPGHEAFT----TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN--PDRVMQELME-Y 134 (178)
T ss_dssp CCSSSSSS----CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC--HHHHHHHHTT-T
T ss_pred CCCCHHHH----HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC--HHHHHHHHHh-c
Confidence 99975332 234467789999999999998888888888888877889999999999997541 1222222111 1
Q ss_pred HHhhCCC--CCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 522 MKLLNIE--NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 522 ~~~~~~~--~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+.... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 135 NLVPEEWGGDTIFCKLSAKTK---------------------------EGLDHLLEMILLVSE 170 (178)
T ss_dssp TCCBTTTTSSEEEEECCSSSS---------------------------HHHHHHHHHHHHHHH
T ss_pred CcChhHcCCcccEEEEecCCC---------------------------CCHHHHHHHHHHhhh
Confidence 1110111 258999999987 688888888876654
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=183.03 Aligned_cols=158 Identities=22% Similarity=0.263 Sum_probs=104.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+... ....+||..+...... .+| ..+.|||
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~-------------~~g-----------~~v~liD 278 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV-------------VGG-----------IPVQVLD 278 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE-------------ETT-----------EEEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEE-------------ECC-----------EEEEEEE
Confidence 46889999999999999999999986543 3334455433211110 012 1489999
Q ss_pred CCCCChhhhHHH----HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQ----RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~----~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||+.......+ ..+..++..+|++|+|+|++++.+..+..++..+.. +|+++|+||+|+.... ...
T Consensus 279 T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~-~~~------ 349 (462)
T 3geh_A 279 TAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQ-LIT------ 349 (462)
T ss_dssp --------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGG-GST------
T ss_pred CCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcch-hhH------
Confidence 999854322111 235567899999999999999999888888887765 7999999999997542 111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.+..+. ...+++++||+++ .|+++|.+.+.+.+...
T Consensus 350 --~~~~~~--~~~~~i~iSAktg---------------------------~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 350 --SLEYPE--NITQIVHTAAAQK---------------------------QGIDSLETAILEIVQTG 385 (462)
T ss_dssp --TCCCCT--TCCCEEEEBTTTT---------------------------BSHHHHHHHHHHHHTTS
T ss_pred --HHHHhc--cCCcEEEEECCCC---------------------------CCHHHHHHHHHHHHhcc
Confidence 111111 3468999999987 79999999999887653
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-16 Score=169.47 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=110.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|+|+|..........+|.......+...+ ..+.+|||
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~------------------------~~~~liDt 57 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD------------------------HQVTLVDL 57 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS------------------------CEEEEEEC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC------------------------CceEEEEC
Confidence 358999999999999999999999885444444455444333222111 24899999
Q ss_pred CCCChhh------hHHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 443 PGTNVIL------QRQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 443 PG~~~~~------~~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
||+.+.. .....++..++ ..+|++|+|+|+++. .....++.++.+.+.|+++|+||+|+.... ......
T Consensus 58 pG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~-~~~~~~ 134 (274)
T 3i8s_A 58 PGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQ-NIRIEI 134 (274)
T ss_dssp CCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHT-TEEECH
T ss_pred cCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhh-hHHHHH
Confidence 9987543 12234555555 799999999999863 556667778888899999999999985321 100011
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+.+.++ .+++++||+.+ .|+++|.+.+.+.+..
T Consensus 135 ----~~l~~~lg---~~~i~~SA~~g---------------------------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 135 ----DALSARLG---CPVIPLVSTRG---------------------------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp ----HHHHHHHT---SCEEECCCGGG---------------------------HHHHHHHHHHHTCCCC
T ss_pred ----HHHHHhcC---CCEEEEEcCCC---------------------------CCHHHHHHHHHHHHhc
Confidence 12222233 68999999987 5777888777776653
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=174.21 Aligned_cols=157 Identities=29% Similarity=0.358 Sum_probs=111.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+.. .....+||.++....+.. +| ..+.|||
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-------------~g-----------~~~~l~D 297 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-------------RG-----------ILFRIVD 297 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-------------TT-----------EEEEEEE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-------------CC-----------eEEEEEE
Confidence 4689999999999999999999998754 344555665443222111 11 1489999
Q ss_pred CCCCC-hhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTN-VILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~-~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||+. .... .....+..++..+|++|+|+|++++.+..+.++++.+ .++|+++|+||+|+... ...+++.
T Consensus 298 TaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~-~~~~~~~-- 372 (482)
T 1xzp_A 298 TAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEK-INEEEIK-- 372 (482)
T ss_dssp SSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCC-CCHHHHH--
T ss_pred CCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccc-cCHHHHH--
Confidence 99986 3211 1123466788999999999999998888887777666 36899999999999753 1222221
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.+ ...+++++||+++ .|+++|.+.|.+.+.
T Consensus 373 ------~~~~-~~~~~i~iSAktg---------------------------~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 373 ------NKLG-TDRHMVKISALKG---------------------------EGLEKLEESIYRETQ 404 (482)
T ss_dssp ------HHHT-CSTTEEEEEGGGT---------------------------CCHHHHHHHHHHHTH
T ss_pred ------HHhc-CCCcEEEEECCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1122 2368999999987 799999999888654
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=175.87 Aligned_cols=163 Identities=21% Similarity=0.298 Sum_probs=119.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCCCCccceeEEEEccCCccchh----------------hcccccCCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYL--KDGVVPTTNEITFLRFSDLASEEQ----------------QRCERHPDG 423 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~~~tT~~~~~~~~~~~~~~~~----------------~~~~~~~~g 423 (921)
...++|+|+|.+|+|||||+|+|+|.++. +.+..|+|..++.+.++....... ........+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999999876 577888887776666654321100 000112245
Q ss_pred eEEeecCCCcccccEEEeCCCCChhhhH-------HHHHHHHhcCCCCEEEEEEeCCCC-CCHHHHHHHHHhhhcCCeEE
Q 002437 424 QYICYLPSPILKEMIIVDTPGTNVILQR-------QQRLTEEFVPRADLVLFVISADRP-LTESEVVFLRYTQQWKKKVV 495 (921)
Q Consensus 424 ~~~~~~p~~~l~~l~lvDTPG~~~~~~~-------~~~~~~~~l~~aD~il~V~da~~~-~t~~e~~~l~~l~~~~~~vi 495 (921)
+..+.+|.+++..++||||||+...... +...+..++..+|+||||+|+++. .+..+..++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 5667788877788999999999742111 456778888999999999999874 67788888999988889999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhh
Q 002437 496 FVLNKSDLYQNAFELEEAISFVKENTMKLL 525 (921)
Q Consensus 496 vVlNK~D~~~~~~~~~~v~~~~~~~~~~~~ 525 (921)
+|+||+|+.. .+++.++...+...+...+
T Consensus 223 lVlNK~Dl~~-~~el~~~~~~l~~s~~~i~ 251 (550)
T 2qpt_A 223 VVLNKADMVE-TQQLMRVYGALMWALGKVV 251 (550)
T ss_dssp EEEECGGGSC-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCccC-HHHHHHHHHHhhcchhhee
Confidence 9999999985 4566666666654444433
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-15 Score=160.42 Aligned_cols=159 Identities=22% Similarity=0.312 Sum_probs=107.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|+|..........+|.......+.. .+ ..+.+||||
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~l~Dtp 58 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-------------RE-----------KEFLVVDLP 58 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-------------TT-----------EEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-------------CC-----------ceEEEEeCC
Confidence 579999999999999999999998763333333443333222111 11 148999999
Q ss_pred CCChhhh--HHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQ--RQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~--~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|+.+... ....++..++ ..+|++++|+|+++. .....++..+...+ .|+++|+||+|+.... ..... .
T Consensus 59 G~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~----~ 131 (271)
T 3k53_A 59 GIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKK-GAKID----I 131 (271)
T ss_dssp CCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHH-TCCCC----H
T ss_pred CccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCccc-ccHHH----H
Confidence 9875422 2334555666 789999999999874 45566777777777 9999999999975321 00000 1
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+.+.++ .+++++||+.+ .|++++.+.+.+.+..
T Consensus 132 ~~l~~~lg---~~~~~~Sa~~g---------------------------~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 132 KKMRKELG---VPVIPTNAKKG---------------------------EGVEELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHS---SCEEECBGGGT---------------------------BTHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---CcEEEEEeCCC---------------------------CCHHHHHHHHHHHHhc
Confidence 12223333 68999999987 6888888888777654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=147.06 Aligned_cols=160 Identities=17% Similarity=0.187 Sum_probs=106.9
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+...++|+|+|.+|+|||||+|+|++..+. ...||+. .....+.. ++ ..+.+|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~-~~~~~~~~-------------~~-----------~~~~~~ 56 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV--TTIPTIG-FNVETVTY-------------KN-----------LKFQVW 56 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCCCSS-EEEEEEEE-------------TT-----------EEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCc-cceEEEEE-------------CC-----------EEEEEE
Confidence 456789999999999999999999987653 2334332 11111100 01 248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||... ....+..++..+|++++|+|++++.+..+. .++..+ .. .+.|+++|+||+|+.... +.+++..
T Consensus 57 Dt~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~ 131 (171)
T 1upt_A 57 DLGGLTS----IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-TSSEMAN 131 (171)
T ss_dssp EECCCGG----GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHH
T ss_pred ECCCChh----hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-CHHHHHH
Confidence 9999743 334567788999999999999987655443 234433 22 578999999999997642 2223322
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+. .........+++++||+.+ .|++++.+.+.+.+.
T Consensus 132 ~~~---~~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 132 SLG---LPALKDRKWQIFKTSATKG---------------------------TGLDEAMEWLVETLK 168 (171)
T ss_dssp HHT---GGGCTTSCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HhC---chhccCCceEEEECcCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 221 1112223468999999987 688888888877664
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=150.46 Aligned_cols=159 Identities=14% Similarity=0.244 Sum_probs=101.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.++.+......+..+....+.. ++.. ..+.++||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D~ 59 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-------------NGKK---------VKLQIWDT 59 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-------------SSCE---------EEEEEECC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-------------CCEE---------EEEEEEeC
Confidence 4589999999999999999999988764332222222222211111 1100 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||... ....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++......
T Consensus 60 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (170)
T 1g16_A 60 AGQER----FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 135 (170)
T ss_dssp TTGGG----TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH
T ss_pred CCChh----hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH
Confidence 99642 233466778999999999999876443332 34444443 36899999999999533222222222211
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 136 -----~~---~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 136 -----EL---GIPFIESSAKND---------------------------DNVNEIFFTLAKLIQ 164 (170)
T ss_dssp -----HH---TCCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----Hc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 12 257999999987 688888888877654
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=149.78 Aligned_cols=159 Identities=17% Similarity=0.256 Sum_probs=106.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....||+.. ....... .+ ..+.||||
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~-~~~~~~~-------------~~-----------~~~~l~Dt 74 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGF-NMRKITK-------------GN-----------VTIKLWDI 74 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSE-EEEEEEE-------------TT-----------EEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCce-eEEEEEe-------------CC-----------EEEEEEEC
Confidence 4689999999999999999999987654 233343332 1111110 01 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||. ++....+..++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+.... +.+++.+.+
T Consensus 75 ~G~----~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~ 149 (188)
T 1zd9_A 75 GGQ----PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKM 149 (188)
T ss_dssp CCS----HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHT
T ss_pred CCC----HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-CHHHHHHHh
Confidence 997 34455677888999999999999876554443 34444322 568999999999997542 222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .........+++++||+.+ .|++++.+.+.+.+.
T Consensus 150 ~---~~~~~~~~~~~~~~SA~~g---------------------------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 150 N---LSAIQDREICCYSISCKEK---------------------------DNIDITLQWLIQHSK 184 (188)
T ss_dssp T---GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHTCC
T ss_pred C---hhhhccCCeeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 1112223568999999987 689999998887765
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=150.89 Aligned_cols=181 Identities=16% Similarity=0.219 Sum_probs=107.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEE--EEccCCccc------hhhccc-ccCCCeEEe----
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITF--LRFSDLASE------EQQRCE-RHPDGQYIC---- 427 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~--~~~~~~~~~------~~~~~~-~~~~g~~~~---- 427 (921)
+..++|+|+|.+|+|||||+|+|++..+. ....+|+. .+.. +.+...... ...... ....+....
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 35689999999999999999999998754 33344443 2222 122111000 000000 000000000
Q ss_pred -ecC-CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-cCCeEEEEEeCCCC
Q 002437 428 -YLP-SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-WKKKVVFVLNKSDL 503 (921)
Q Consensus 428 -~~p-~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-~~~~vivVlNK~D~ 503 (921)
..+ ......+.||||||.. .+...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|.
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~----~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQE----RYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGG----GCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred ccccCccceeEEEEEECCCcH----HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 000 0011358999999963 3334577888999999999999987554443 35555544 45899999999993
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 504 YQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 504 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+++.+.... ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 160 NKFQVDILEVQKYAQD--------NNLLFIQTSAKTG---------------------------TNIKNIFYMLAEEIY 203 (208)
T ss_dssp C-CCSCHHHHHHHHHH--------TTCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHH--------cCCcEEEEecCCC---------------------------CCHHHHHHHHHHHHH
Confidence 2222223343333322 2468999999987 688888888776654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=147.44 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=88.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++....+....+.+.....+... +.. ..+.++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~---------~~~~i~D~~ 57 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD---------------GEE---------ASLMVYDIW 57 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEET---------------TEE---------EEEEEEECC
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEEC---------------CEE---------EEEEEEECC
Confidence 47899999999999999999998775443332222211111111 110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.. ........++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 58 g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-- 131 (166)
T 3q72_A 58 EQD----GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-- 131 (166)
T ss_dssp -------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH--
T ss_pred CCc----cchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH--
Confidence 973 4455677788999999999999976544433 34444443 3689999999999975421 1111111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 132 ---~~~~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 132 ---CAVV---FDCKFIETSAALH---------------------------HNVQALFEGVVRQIR 163 (166)
T ss_dssp ---HHHH---TTCEEEECBGGGT---------------------------BSHHHHHHHHHHHHH
T ss_pred ---HHHH---hCCcEEEeccCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1111 2368999999987 688888888877654
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-15 Score=147.80 Aligned_cols=159 Identities=15% Similarity=0.191 Sum_probs=107.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|+|++.+ .....||+. ........ ++ ..+.++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~-~~~~~~~~-------------~~-----------~~~~~~D 68 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTISPTLG-FNIKTLEH-------------RG-----------FKLNIWD 68 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCCCSS-EEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCcccccCc-cceEEEEE-------------CC-----------EEEEEEE
Confidence 367999999999999999999999887 444555543 21111100 01 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||. ++....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+... ...+++.+.
T Consensus 69 t~G~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~ 143 (186)
T 1ksh_A 69 VGGQ----KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA-LSCNAIQEA 143 (186)
T ss_dssp ECCS----HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred CCCC----HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-CCHHHHHHH
Confidence 9997 34455677889999999999999987655443 34444432 46899999999999754 222222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.. ........+++++||+++ .|++++.+.+.+.+.
T Consensus 144 ~~~---~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 144 LEL---DSIRSHHWRIQGCSAVTG---------------------------EDLLPGIDWLLDDIS 179 (186)
T ss_dssp TTG---GGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred hCh---hhccCCceEEEEeeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 110 111223568999999987 688888888877665
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=175.36 Aligned_cols=166 Identities=23% Similarity=0.316 Sum_probs=113.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+... ....+||.......+.. +| ..+.|||
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-------------~~-----------~~~~l~D 229 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-------------NQ-----------QEFVIVD 229 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-------------TT-----------EEEEETT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-------------CC-----------eEEEEEE
Confidence 56899999999999999999999987653 33344554332211111 11 1489999
Q ss_pred CCCCChh------hhHHHH-HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChH-HHHHH
Q 002437 442 TPGTNVI------LQRQQR-LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAF-ELEEA 513 (921)
Q Consensus 442 TPG~~~~------~~~~~~-~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~-~~~~v 513 (921)
|||+... .+.+.. ....++..+|++|+|+|++++.+.++..++..+...+.|+++|+||||+..... ..+++
T Consensus 230 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~ 309 (436)
T 2hjg_A 230 TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEF 309 (436)
T ss_dssp HHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHH
T ss_pred CCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHH
Confidence 9997321 122222 234578899999999999999999999988888888999999999999986422 23444
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.+.+.+... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 310 ~~~~~~~l~~~---~~~~~~~~SA~tg---------------------------~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 310 EENIRDHFQFL---DYAPILFMSALTK---------------------------KRIHTLMPAIIKASE 348 (436)
T ss_dssp HHHHHHHCGGG---TTSCEEECCTTTC---------------------------TTGGGHHHHHHHHHH
T ss_pred HHHHHHhcccC---CCCCEEEEecccC---------------------------CCHHHHHHHHHHHHH
Confidence 45444443322 3578999999987 577777777766544
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=160.31 Aligned_cols=174 Identities=18% Similarity=0.272 Sum_probs=106.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc-------------chhh-----------ccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS-------------EEQQ-----------RCE 418 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~-------------~~~~-----------~~~ 418 (921)
..++|+|+|.+|+|||||+|+|+|.++.|.+...+|..++.++...... .+.. +..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999988766655555554332211000 0000 000
Q ss_pred c----cCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCCCCEEE-EEEeCCCCCCHHHH-HH
Q 002437 419 R----HPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPRADLVL-FVISADRPLTESEV-VF 483 (921)
Q Consensus 419 ~----~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~aD~il-~V~da~~~~t~~e~-~~ 483 (921)
. .....+......+....+.||||||+... .......+..|+..+|.++ +|+|++.+.+..+. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0 00000111111122247999999998531 1256678888998888665 79999887766664 57
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.+...+.|+++|+||+|+........ +.+...+. .+.....+++++||+++
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~~---~~~~~~~~-~~~~~~~~v~~~SA~~~ 237 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMDEGTDAR---DVLENKLL-PLRRGYIGVVNRSQKDI 237 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCCCH---HHHTTCSS-CCTTCEEECCCCCCBCT
T ss_pred HHHhCCCCCeEEEEEEccccCCCCchHH---HHHhCCcC-cCCCCcEEEECCChhhc
Confidence 7888778899999999999986432111 11111100 01111247889999887
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=142.58 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=103.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|+|++..+.. ..||.. ........ .+ ..+.+|||||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~i~Dt~G 53 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVETVEY-------------KN-----------ISFTVWDVGG 53 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCCCSS-CCEEEEEC-------------SS-----------CEEEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccCcCc-eeEEEEEE-------------CC-----------EEEEEEEcCC
Confidence 479999999999999999999876532 334333 11111100 00 2489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.. .....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ..+++.....
T Consensus 54 ~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~- 127 (164)
T 1r8s_A 54 QD----KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG- 127 (164)
T ss_dssp CG----GGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTT-
T ss_pred Ch----hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-CHHHHHHHhC-
Confidence 74 3455677889999999999999987554443 34444432 368999999999997542 2222222211
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.........+++++||+++ .|++++.+.+.+.+.
T Consensus 128 --~~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 128 --LHSLRHRNWYIQATCATSG---------------------------DGLYEGLDWLSNQLR 161 (164)
T ss_dssp --GGGCSSCCEEEEECBTTTT---------------------------BTHHHHHHHHHHHC-
T ss_pred --cccccCccEEEEEcccCCC---------------------------cCHHHHHHHHHHHHh
Confidence 1112223467999999987 688888888877654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=167.79 Aligned_cols=173 Identities=18% Similarity=0.252 Sum_probs=114.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhc--------------------------
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQR-------------------------- 416 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~-------------------------- 416 (921)
..+.|+|+|.+|+|||||+|+|+|.+++|.+...+|..++.+.+..........
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999999999999888877766553321110000
Q ss_pred -----ccccCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCCCCEEEEEEeCCC-C-CCHHH
Q 002437 417 -----CERHPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPRADLVLFVISADR-P-LTESE 480 (921)
Q Consensus 417 -----~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~aD~il~V~da~~-~-~t~~e 480 (921)
........+...+..+...+++||||||+... ......++..|+..+|++|+|+|+.+ . .+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 00001111222222333457999999998643 23446788899999999999998643 2 23444
Q ss_pred HHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHH
Q 002437 481 VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLE 542 (921)
Q Consensus 481 ~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~ 542 (921)
..+++.+...+.|+++|+||+|+........+ . +.........+++++|++.+..
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~---~----~~~~~~~~~~~~~~v~~~s~~~ 247 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVE---I----LEGRSFKLKYPWVGVVNRSQAD 247 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHH---H----HTTSSSCCSSCCEEECCCCHHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccHHH---H----HcCccccccCCeEEEEECChHH
Confidence 66778888888999999999999865322111 1 1111222346788999988644
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=161.90 Aligned_cols=162 Identities=25% Similarity=0.342 Sum_probs=110.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
...|+++|++|+|||||+|+|+|.++...+..| ||.......+.. ++ ..+.++||
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-------------~~-----------~~i~~iDT 63 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-------------GA-----------YQAIYVDT 63 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-------------TT-----------EEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-------------CC-----------eeEEEEEC
Confidence 357999999999999999999999875444333 443221111100 00 14899999
Q ss_pred CCCC-hhhhH----HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTN-VILQR----QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~-~~~~~----~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||+. ..... ....+..++..+|++++|+|+++ ++..+..+++.+...+.|+++|+||+|+......+.+....
T Consensus 64 pG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~- 141 (301)
T 1ega_A 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQF- 141 (301)
T ss_dssp SSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHH-
T ss_pred cCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHH-
Confidence 9986 22111 11223456789999999999988 88888878888877789999999999998633333222222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+.++ ...++++||+.+ .|++.|.+.+.+.+.+
T Consensus 142 ---l~~~~~--~~~~i~iSA~~g---------------------------~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 142 ---LASQMN--FLDIVPISAETG---------------------------LNVDTIAAIVRKHLPE 175 (301)
T ss_dssp ---HHTTSC--CSEEEECCTTTT---------------------------TTHHHHHHHHHTTCCB
T ss_pred ---HHHhcC--cCceEEEECCCC---------------------------CCHHHHHHHHHHhCCc
Confidence 222222 247999999887 6888998888877654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=161.56 Aligned_cols=159 Identities=21% Similarity=0.287 Sum_probs=110.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|+|+|..........+|.......+... + ..+.||||
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~-------------~-----------~~~~l~Dt 59 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-------------G-----------YTINLIDL 59 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-------------T-----------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC-------------C-----------eEEEEEEC
Confidence 35789999999999999999999987654444445544333322110 1 25899999
Q ss_pred CCCChhhh--HHHHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQ--RQQRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~--~~~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+.+... ....++..++ ..+|++++|+|+++. .....++.++.+.+.|+++|+||+|+.... .... . .
T Consensus 60 pG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~-~i~~---~-~ 132 (258)
T 3a1s_A 60 PGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKT-GMKI---D-R 132 (258)
T ss_dssp CCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHT-TCCB---C-H
T ss_pred CCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCcc-chHH---H-H
Confidence 99875432 2334556666 689999999999874 456667788888899999999999975321 0000 0 1
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+...++ .+++++||+.+ .|+++|.+.+.+.+.
T Consensus 133 ~~l~~~lg---~~vi~~SA~~g---------------------------~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 133 YELQKHLG---IPVVFTSSVTG---------------------------EGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHC---SCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CCEEEEEeeCC---------------------------cCHHHHHHHHHHHhh
Confidence 12222233 68999999987 688888888877654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=155.31 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=107.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|+|+|..........+|.......+.. + ..+.+|||
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~------------------------~~l~l~Dt 56 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N------------------------KDLEIQDL 56 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C------------------------TTEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C------------------------CeEEEEEC
Confidence 3579999999999999999999998755555544554433332221 1 25899999
Q ss_pred CCCChhh--hHHHHHHHHhcC--CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVIL--QRQQRLTEEFVP--RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~--~~~~~~~~~~l~--~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+.+.. .....++..++. .+|++++|+|+++. +....++.++.+.+.|+++|+||+|+.... ....- .
T Consensus 57 pG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~-~~~~~----~ 129 (272)
T 3b1v_A 57 PGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQ-GKKIN----V 129 (272)
T ss_dssp CCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHT-TCCCC----H
T ss_pred CCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcC-CcHHH----H
Confidence 9987543 123445666664 69999999999863 445566677777889999999999975210 00000 1
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+...++ .+++++||+++ .|++++.+.+.+.+.
T Consensus 130 ~~l~~~lg---~~vi~~SA~~g---------------------------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 130 DKLSYHLG---VPVVATSALKQ---------------------------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHT---SCEEECBTTTT---------------------------BSHHHHHHHHHHSCT
T ss_pred HHHHHHcC---CCEEEEEccCC---------------------------CCHHHHHHHHHHHHh
Confidence 11222233 68999999987 678888777776654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=149.65 Aligned_cols=160 Identities=17% Similarity=0.223 Sum_probs=103.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEE-EccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFL-RFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|+|++..+.+....+|+...... .+.. ++.. ..+.+|
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~~~ 65 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-------------DGVK---------VKLQMW 65 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-------------CCEE---------EEEEEE
Confidence 3468999999999999999999999887655555555422111 1110 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||. +.+...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 66 Dt~G~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 141 (180)
T 2g6b_A 66 DTAGQ----ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEK 141 (180)
T ss_dssp ECCCC------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHH
T ss_pred eCCCc----HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHH
Confidence 99996 34456678888999999999999876543332 34444443 5689999999999975321 1122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... .. ..+++++||+++ .|++++.+.+.+.+.
T Consensus 142 ~~~-----~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 142 LAK-----EY---GLPFMETSAKTG---------------------------LNVDLAFTAIAKELK 173 (180)
T ss_dssp HHH-----HH---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----Hc---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 12 357999999887 688888888877665
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-15 Score=173.64 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=116.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++.+....+ ..+||.......+.. ++ ..+.||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-------------~~-----------~~~~l~ 248 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-------------NQ-----------QEFVIV 248 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-------------TT-----------EEEEET
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-------------CC-----------ceEEEE
Confidence 35789999999999999999999988644333 333443321111110 11 248999
Q ss_pred eCCCCChh------hhHHHH-HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHH
Q 002437 441 DTPGTNVI------LQRQQR-LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEE 512 (921)
Q Consensus 441 DTPG~~~~------~~~~~~-~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~ 512 (921)
||||+... .+.+.. ....++..+|++|+|+|++++.+..+..++..+...+.|+++|+||||+.... ...++
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~ 328 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKE 328 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHH
T ss_pred ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHH
Confidence 99996321 233322 24457899999999999999999999999999988999999999999998542 23455
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+.+.+.+... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 329 ~~~~~~~~~~~~---~~~~~~~~SA~~g---------------------------~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 329 FEENIRDHFQFL---DYAPILFMSALTK---------------------------KRIHTLMPAIIKASE 368 (456)
T ss_dssp HHHHHHHHCGGG---TTSCEEECCTTTC---------------------------TTGGGHHHHHHHHHH
T ss_pred HHHHHHHhcccC---CCCCEEEEcCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 555555443322 3578999999987 678888887776654
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=148.11 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+........+.......+... +.. ..+.+|||
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----------~~~~i~Dt 68 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN------------DAT----------VKFEIWDT 68 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET------------TEE----------EEEEEEEC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC------------CEE----------EEEEEEeC
Confidence 45899999999999999999999887654322221211111111000 000 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhhhc---CCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQQW---KKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~~~---~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||.. .+...+..++..+|++|+|+|++++.+..+ ..++..+... +.|+++|+||+|+..... ..+++.+..
T Consensus 69 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 144 (181)
T 2efe_B 69 AGQE----RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYA 144 (181)
T ss_dssp CCSG----GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred CCCh----hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHH
Confidence 9974 333456778899999999999987655333 3455555543 678999999999975321 122222222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. . ...+++++||+.+ .|++++.+.|.+.+..
T Consensus 145 ~----~----~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 145 Q----E----NGLFFMETSAKTA---------------------------TNVKEIFYEIARRLPR 175 (181)
T ss_dssp H----H----TTCEEEECCSSSC---------------------------TTHHHHHHHHHHTCC-
T ss_pred H----H----cCCEEEEEECCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 1 1 2468999999887 6899999998887663
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=145.47 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=103.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+ ...|++. .+....+.. ++.. ..+.+||
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~D 62 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEV-------------DGHF---------VTMQIWD 62 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEE-------------CCEE---------EEEEEEe
Confidence 45899999999999999999999876543 2233332 111111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-------cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-------WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-------~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|||.. ........++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+++
T Consensus 63 t~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~ 138 (177)
T 1wms_A 63 TAGQE----RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEA 138 (177)
T ss_dssp CCCCG----GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHH
T ss_pred CCCch----hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHH
Confidence 99973 3455677889999999999999876543332 24444332 467999999999997432222333
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+... . ....+++++||+.+ .|++++.+.+.+.+.
T Consensus 139 ~~~~~----~---~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 139 QAWCR----D---NGDYPYFETSAKDA---------------------------TNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHHH----H---TTCCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHH----h---cCCceEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 32222 1 13478999999987 688888888876654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=153.42 Aligned_cols=160 Identities=14% Similarity=0.251 Sum_probs=101.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|+|++..+.+......+..+....+.. ++.. ..+.|||
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D 75 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-------------NGKK---------VKLQLWD 75 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-------------TTEE---------EEEEEEC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-------------CCEE---------EEEEEEe
Confidence 45789999999999999999999988764432222222222211110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||... +...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++.....
T Consensus 76 t~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 151 (213)
T 3cph_A 76 TAGQER----FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA 151 (213)
T ss_dssp CTTGGG----GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHH
T ss_pred CCCcHH----HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHH
Confidence 999642 334467788999999999999875443332 34444443 3689999999999953321222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+ ..+++++||+.+ .|++++...|.+.+.
T Consensus 152 -----~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 152 -----KEL---GIPFIESSAKND---------------------------DNVNEIFFTLAKLIQ 181 (213)
T ss_dssp -----HHH---TCCEEECBTTTT---------------------------BSSHHHHHHHHHHHH
T ss_pred -----HHc---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 112 257999999887 577777777766554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=169.06 Aligned_cols=143 Identities=28% Similarity=0.315 Sum_probs=93.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|.|++.+....+ ..++|.+........ +| ..+.+||||
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-------------~~-----------~~~~l~DT~ 57 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-------------YG-----------KTFKLVDTC 57 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-------------TT-----------EEEEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-------------CC-----------eEEEEEECC
Confidence 58999999999999999999998754333 333444332211110 11 248899999
Q ss_pred CCCh-----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNV-----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~-----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|+.. ..+.....+..+++.||++|+|+|+..+.+..+..+...++..++|+++|+||+|+... .. ....
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~---~~---~~~~ 131 (439)
T 1mky_A 58 GVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE---FE---REVK 131 (439)
T ss_dssp TTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---HH---HHTH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc---cH---HHHH
Confidence 9853 13445667888999999999999999989888877777777788999999999997421 00 1110
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+.. ++ ..+++++||+.+
T Consensus 132 ~~~~~-lg--~~~~~~iSA~~g 150 (439)
T 1mky_A 132 PELYS-LG--FGEPIPVSAEHN 150 (439)
T ss_dssp HHHGG-GS--SCSCEECBTTTT
T ss_pred HHHHh-cC--CCCEEEEeccCC
Confidence 11111 22 236899999987
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=149.78 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=102.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...+|+++|.+|+|||||+|+|.+...... ...++|..+....... ++ ..+.++|
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~l~D 58 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-------------DG-----------MPLHIID 58 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-------------CC-----------eEEEEEE
Confidence 457899999999999999999999865322 2333443322111110 11 1378999
Q ss_pred CCCCChhhhHHH----HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh---cCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVILQRQQ----RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ---WKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~~----~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||+........ ..+..++..+|++++|+|++++.+.....++..+.. .+.|+++|+||+|+.....
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------ 132 (172)
T 2gj8_A 59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------ 132 (172)
T ss_dssp CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------
Confidence 999854321111 123456789999999999988776555556555544 3589999999999853210
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+......+++++||+++ .|++++.+.+.+.+.
T Consensus 133 --------~~~~~~~~~~~~~SA~~g---------------------------~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 --------GMSEVNGHALIRLSARTG---------------------------EGVDVLRNHLKQSMG 165 (172)
T ss_dssp --------EEEEETTEEEEECCTTTC---------------------------TTHHHHHHHHHHHC-
T ss_pred --------hhhhccCCceEEEeCCCC---------------------------CCHHHHHHHHHHHhh
Confidence 011113468999999987 688898888887764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=151.69 Aligned_cols=160 Identities=19% Similarity=0.266 Sum_probs=103.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|+|++..+........+.......+.. ++.. ..+.++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~D 64 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-------------NGEK---------VKLQIWD 64 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-------------CCEE---------EEEEEEc
Confidence 45689999999999999999999998765433333332222211111 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc--CCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW--KKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~--~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|||.. .....+..++..+|++|+|+|++++.+..+. .++..+... ..|+++|+||+|+..... ..++.....
T Consensus 65 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 140 (181)
T 3tw8_B 65 TAGQE----RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFA 140 (181)
T ss_dssp ETTGG----GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCCch----hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHH
Confidence 99963 2334466788999999999999986544443 255555443 479999999999864311 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 141 -----~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 141 -----GQM---GIQLFETSAKEN---------------------------VNVEEMFNCITELVL 170 (181)
T ss_dssp -----HHH---TCCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 112 368999999987 688898888887765
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=154.69 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=123.4
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEe-------cCcHHHHHhCCCCeEEcCCCCCC
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLI-------AERVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~iv-------nd~~dla~~~~a~GvHL~~~~l~ 170 (921)
.++.+.++++.++|+++||+|.++.+. .+.++++|+. +..++| |++++.|.++||||||+++.+.+
T Consensus 19 ~~~~~~~~~~~~~G~~~i~l~~~~~~~------~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~~~~~ 92 (212)
T 2v82_A 19 DEALAHVGAVIDAGFDAVEIPLNSPQW------EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPNIHSE 92 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTSTTH------HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSSCCHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCChhH------HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 377888999999999999999997654 2455666766 778888 89999999999999999987766
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCC--CCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVK--IPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~--~Pv~aiGGi~~~ 247 (921)
....++.+| .. . ++| |||++++..| ...|+||+++-|- ...|+. ..++++..+ +||+|+|||+++
T Consensus 93 ~~~~~~~~g---~~-~---~~g--~~t~~e~~~a-~~~G~d~v~v~~t--~~~g~~~~~~l~~~~~~~ipvia~GGI~~~ 160 (212)
T 2v82_A 93 VIRRAVGYG---MT-V---CPG--CATATEAFTA-LEAGAQALKIFPS--SAFGPQYIKALKAVLPSDIAVFAVGGVTPE 160 (212)
T ss_dssp HHHHHHHTT---CE-E---ECE--ECSHHHHHHH-HHTTCSEEEETTH--HHHCHHHHHHHHTTSCTTCEEEEESSCCTT
T ss_pred HHHHHHHcC---CC-E---Eee--cCCHHHHHHH-HHCCCCEEEEecC--CCCCHHHHHHHHHhccCCCeEEEeCCCCHH
Confidence 666666665 33 1 455 8999999999 8999999998442 123454 567777775 999999999999
Q ss_pred ChHHHHHcCCcEEEEeeccccc
Q 002437 248 DVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|+.++.++||+||++.++.++.
T Consensus 161 ~i~~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 161 NLAQWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp THHHHHHHTCSEEEECTTTCCT
T ss_pred HHHHHHHcCCCEEEEChHHhCC
Confidence 9999999999999988887664
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-15 Score=151.55 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=104.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.......++.......+.. ++.. ..+.|+||
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 72 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-------------DGKT---------IKLQIWDT 72 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-------------TTEE---------EEEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999988765433333332222221111 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
||.. .....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .++...
T Consensus 73 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-- 146 (196)
T 3tkl_A 73 AGQE----RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE-- 146 (196)
T ss_dssp CCSG----GGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHH--
T ss_pred CCcH----hhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHH--
Confidence 9964 3344577788999999999999875443332 34444433 36899999999999754211 112111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...+ ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 147 ---~~~~~---~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 147 ---FADSL---GIPFLETSAKNA---------------------------TNVEQSFMTMAAEIK 178 (196)
T ss_dssp ---HHHHT---TCCEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred ---HHHHc---CCcEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11222 368999999987 688888887776655
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=149.43 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=106.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.........+|+. +....+.. ++ ..+.+|||
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~-------------~~-----------~~~~l~Dt 74 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKS-------------SS-----------LSFTVFDM 74 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEEC-------------SS-----------CEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEE-------------CC-----------EEEEEEEC
Confidence 5689999999999999999999998744444445443 22211110 01 25899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+... ...+++.+
T Consensus 75 ~G~~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~ 149 (190)
T 2h57_A 75 SGQGRY----RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA-VTSVKVSQ 149 (190)
T ss_dssp CCSTTT----GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC-CCHHHHHH
T ss_pred CCCHHH----HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC-CCHHHHHH
Confidence 997432 34466788999999999999876433332 33443332 46899999999999754 22233333
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+. + ..+.....+++++||+++ .|++++.+.|.+.+.
T Consensus 150 ~~~--~-~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 150 LLC--L-ENIKDKPWHICASDAIKG---------------------------EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp HHT--G-GGCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHC-
T ss_pred HhC--h-hhccCCceEEEEccCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 221 0 112223568999999987 689999988887764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-15 Score=147.89 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=102.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|+|++..+.+ ...|++. ......+.. ++.. ..+.++||
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D~ 59 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTI-------------NEHT---------VKFEIWDT 59 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEE-------------TTEE---------EEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4789999999999999999999887543 2233322 111111110 0100 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH--H--HHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF--E--LEEAI 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~--~--~~~v~ 514 (921)
||... +...+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... + .++..
T Consensus 60 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~ 135 (170)
T 1ek0_A 60 AGQER----FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGE 135 (170)
T ss_dssp CCSGG----GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHH
T ss_pred CCChh----hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHH
Confidence 99743 334577888999999999999976544443 34444443 4679999999999874310 1 11111
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. +.... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 136 ~-----~~~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 136 K-----LAEEK---GLLFFETSAKTG---------------------------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp H-----HHHHH---TCEEEECCTTTC---------------------------TTHHHHHHHHHTTSC
T ss_pred H-----HHHHc---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1 11112 368999999987 688888888877654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=149.43 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+. ..++.. .+....... ++.. ..+.|||
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D 63 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTIYR-------------NDKR---------IKLQIWD 63 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEEE-------------CCeE---------EEEEEEE
Confidence 458999999999999999999999876432 222221 111111100 1100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||.. .....+..++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 64 t~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 139 (203)
T 1zbd_A 64 TAGLE----RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL 139 (203)
T ss_dssp ECCSG----GGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHH
T ss_pred CCCch----hhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence 99974 4456688899999999999999876543333 34555544 4689999999999975311 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ..+ ..+++++||+.+ .|++++.+.|.+.+.
T Consensus 140 ~-----~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 140 A-----DHL---GFEFFEASAKDN---------------------------INVKQTFERLVDVIC 170 (203)
T ss_dssp H-----HHH---TCEEEECBTTTT---------------------------BSSHHHHHHHHHHHH
T ss_pred H-----HHC---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 112 358999999987 577777777766554
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=143.00 Aligned_cols=157 Identities=19% Similarity=0.253 Sum_probs=101.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++..+.. ...+++.......... ++.. ..+.++|||
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D~~ 59 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYRKQVVI-------------DGET---------CLLDILDTA 59 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 4789999999999999999999876543 2333433221111100 1110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|.... ......++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++..+...
T Consensus 60 G~~~~----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 135 (166)
T 2ce2_X 60 GQEEY----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR 135 (166)
T ss_dssp CCSSC----CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred Cchhh----hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH
Confidence 97532 24566778889999999999875443332 34444433 36899999999998753222222222221
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 136 -----~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 136 -----SY---GIPYIETSAKTR---------------------------QGVEDAFYTLVREIR 164 (166)
T ss_dssp -----HH---TCCEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred -----Hc---CCeEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 12 357999999887 688888888876653
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-15 Score=145.66 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=100.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+... ..|++. .+....+.. ++.. ..+.+||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~D 61 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDK-HITTLGASFLTKKLNI-------------GGKR---------VNLAIWD 61 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSS-CCCCCSCEEEEEEEES-------------SSCE---------EEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcC-CCCccceEEEEEEEEE-------------CCEE---------EEEEEEE
Confidence 468999999999999999999998775432 223322 222111111 1110 1488999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
|||.. ........++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...++..+.
T Consensus 62 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 137 (170)
T 1z08_A 62 TAGQE----RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY 137 (170)
T ss_dssp CCCC-----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCcH----hhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 99963 3445667788999999999999876544433 34444433 568999999999986421 112222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . ...+++++||+++ .|++++.+.+.+.+.
T Consensus 138 ~~-----~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 138 AE-----S---VGAKHYHTSAKQN---------------------------KGIEELFLDLCKRMI 168 (170)
T ss_dssp HH-----H---TTCEEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----H---cCCeEEEecCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 11 1 2368999999987 688888888876654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=146.10 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=103.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-e--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-I--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|+|++..+.+ ...|+... . ..+.+.. .. ..+.+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~----------~~~~~ 59 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQN--------------EL----------HKFLI 59 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETT--------------EE----------EEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECC--------------eE----------EEEEE
Confidence 45899999999999999999999987543 22333221 1 1111111 00 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~ 514 (921)
+||||.. .....+..++..+|++++|+|++++.+..+. .++..+.. ...|+++|+||+|+....+. .++..
T Consensus 60 ~Dt~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~ 135 (170)
T 1z0j_A 60 WDTAGLE----RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 135 (170)
T ss_dssp EEECCSG----GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EcCCCch----hhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHH
Confidence 9999974 3334567788999999999999876554443 35555543 35689999999999743111 11221
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 136 ~~-----~~~---~~~~~~~~Sa~~~---------------------------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 136 DY-----ADS---IHAIFVETSAKNA---------------------------ININELFIEISRRIP 168 (170)
T ss_dssp HH-----HHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHCC
T ss_pred HH-----HHH---cCCEEEEEeCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 11 111 2368999999987 688888888877654
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=159.69 Aligned_cols=174 Identities=19% Similarity=0.283 Sum_probs=105.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc-------------chhh-----------cc-
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS-------------EEQQ-----------RC- 417 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~-------------~~~~-----------~~- 417 (921)
..+.|+|+|.+|+|||||+|+|+|.++.|.+...+|..++.++....+. .+.. +.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999998877777776665433211100 0000 00
Q ss_pred ---cccCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCC-CCEEEEEEeCCCCCCHHHH-HH
Q 002437 418 ---ERHPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPR-ADLVLFVISADRPLTESEV-VF 483 (921)
Q Consensus 418 ---~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~-aD~il~V~da~~~~t~~e~-~~ 483 (921)
...........+..+...+++||||||+... .+....++..|+.. .++|++|++++..+...+. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0000001111111122246999999998532 12456677788854 4577778888876665555 47
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
++.+...+.|+++|+||+|+.....+..+ .+..... .+.....+|+++||+.+
T Consensus 190 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~-~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 190 AKEVDPQGQRTIGVITKLDLMDEGTDARD---VLENKLL-PLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHHHCTTCTTEEEEEECGGGSCTTCCCHH---HHTTCSS-CCTTCEEECCCCCHHHH
T ss_pred HHHhCcCCCceEEEeccccccCcchhHHH---HHhCCcc-cccCCceEEEeCCcccc
Confidence 78888788999999999999864322111 1111000 01112246888999886
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=144.16 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.........+.+. ....+.+. +.. ..+.++|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~---------~~~~~~D 58 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVD---------------GED---------TTLVVVD 58 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEET---------------TEE---------EEEEEEC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEEC---------------CEE---------EEEEEEe
Confidence 4689999999999999999999998765432222211 11111111 110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhc----CCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQW----KKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~----~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
|||.... +...+...++..+|++++|+|.+++.+.... .++..+... +.|+++|+||+|+..... ..++...
T Consensus 59 ~~g~~~~--~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 136 (175)
T 2nzj_A 59 TWEAEKL--DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA 136 (175)
T ss_dssp CC---------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred cCCCCcc--chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH
Confidence 9997532 1234556778999999999999876544433 344445443 689999999999975311 1122221
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 137 ~~-----~~~---~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 137 CA-----VVF---DCKFIETSATLQ---------------------------HNVAELFEGVVRQLR 168 (175)
T ss_dssp HH-----HHH---TSEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----HHc---CCeEEEEecCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 112 368999999987 688888888877654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-15 Score=144.41 Aligned_cols=158 Identities=21% Similarity=0.225 Sum_probs=103.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......+.. ++.. ..+.++||
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~D~ 59 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-------------DGEE---------VQIDILDT 59 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 3589999999999999999999988753 33444444322211110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||.. +....+..++..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.... ...++....
T Consensus 60 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (168)
T 1u8z_A 60 AGQE----DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135 (168)
T ss_dssp CC-------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCcc----hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHH
Confidence 9964 3445677888999999999999876543332 33444432 368999999999986431 112233222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ..+++++||+++ .|++++.+.+.+.+.
T Consensus 136 ~~~-----~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 136 ADQ-----W---NVNYVETSAKTR---------------------------ANVDKVFFDLMREIR 166 (168)
T ss_dssp HHH-----H---TCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----c---CCeEEEeCCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 1 368999999987 688888888876653
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=147.35 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eE---EEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-IT---FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
..++|+|+|.+|+|||||+|+|++..+.+ ...+|... +. .+.+...... ....+.. ..+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~------~~~~~~~---------~~~~ 73 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDG------AVGRGQR---------IHLQ 73 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCC------SSCCCEE---------EEEE
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCccc------ccccCcE---------EEEE
Confidence 46899999999999999999999876543 22333221 11 1111111000 0000000 1489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEE 512 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~ 512 (921)
++||||.. .....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++
T Consensus 74 l~Dt~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 149 (195)
T 3bc1_A 74 LWDTAGLE----RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEE 149 (195)
T ss_dssp EEEECCSG----GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEeCCCcH----HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHH
Confidence 99999973 4456788899999999999999876554442 35555543 4689999999999864211 1122
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+... .. ..+++++||+.+ .|++++.+.|.+.+.
T Consensus 150 ~~~~~~-----~~---~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 150 ARELAE-----KY---GIPYFETSAANG---------------------------TNISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHHH-----HH---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHH-----Hc---CCCEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 222211 12 358999999886 688888888877654
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=145.21 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+|+|.+|+|||||+|+|++.+.. ...||... ...+.+ ++ ..+.+|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~~~~~---------------~~-----------~~~~i~ 65 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV--HTSPTIGSNVEEIVI---------------NN-----------TRFLMW 65 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE--EEECCSCSSCEEEEE---------------TT-----------EEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCCccceEEEEE---------------CC-----------EEEEEE
Confidence 35799999999999999999999987653 22233220 001111 11 248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||.. +....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ..+++.+
T Consensus 66 Dt~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~ 140 (187)
T 1zj6_A 66 DIGGQE----SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQ 140 (187)
T ss_dssp ECCC--------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHH
T ss_pred ECCCCH----hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-CHHHHHH
Confidence 999974 3334566788999999999999987655544 34444433 568999999999997531 2233322
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.. ..+.....+++++||+++ .|++++.+.+.+.+..
T Consensus 141 ~~~~---~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 141 FLKL---TSIKDHQWHIQACCALTG---------------------------EGLCQGLEWMMSRLKI 178 (187)
T ss_dssp HHTG---GGCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHHCC
T ss_pred HhCh---hhhcCCCcEEEEccCCCC---------------------------cCHHHHHHHHHHHHHH
Confidence 2211 112223468999999987 6899999998887654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.9e-15 Score=146.71 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=102.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.++|+|+|.+|+|||||+|+|++..+.. ...++.......... .++.. ..+.++||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~---------~~~~~~Dt 58 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIPTVEDTYRQVIS-------------CDKSI---------CTLQITDT 58 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCS-SCCCCSCEEEEEEEE-------------ETTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccccEEEEEE-------------ECCEE---------EEEEEEEC
Confidence 45899999999999999999999976542 233333221111000 01110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-----cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-----WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-----~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||... +......++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+....+ ...+...
T Consensus 59 ~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~ 134 (172)
T 2erx_A 59 TGSHQ----FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA 134 (172)
T ss_dssp CSCSS----CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred CCchh----hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH
Confidence 99753 334566778889999999999875443332 34444433 3689999999999864311 1111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. .... ..+++++||+++ .|++++.+.+.+.+..
T Consensus 135 ~-----~~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 135 L-----ARTW---KCAFMETSAKLN---------------------------HNVKELFQELLNLEKR 167 (172)
T ss_dssp H-----HHHH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHTCCS
T ss_pred H-----HHHh---CCeEEEecCCCC---------------------------cCHHHHHHHHHHHHhh
Confidence 1 1111 368999999987 6899999999887653
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=146.98 Aligned_cols=158 Identities=19% Similarity=0.268 Sum_probs=103.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......... ++.. ..+.+|||
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 59 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVI-------------DGET---------CLLDILDT 59 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC-CCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCchheEEEEEEE-------------CCcE---------EEEEEEEC
Confidence 4589999999999999999999987753 33444543322211110 1110 13788999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. ........++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+......
T Consensus 60 ~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 135 (189)
T 4dsu_A 60 AGQE----EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA 135 (189)
T ss_dssp CCC-------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH
T ss_pred CCcH----HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH
Confidence 9974 3344566778889999999999876443333 23333332 4689999999999975422222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .. ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 136 ~-----~~---~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 136 R-----SY---GIPFIETSAKTR---------------------------QGVDDAFYTLVREIR 165 (189)
T ss_dssp H-----HH---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred H-----Hc---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 12 367999999987 688888888877665
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-15 Score=146.15 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=103.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|+|++..+.. ...+++. ......+.. ++.. ..+.+|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~ 69 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEV-------------SGQK---------IKLQIW 69 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEE-------------CCeE---------EEEEEE
Confidence 346899999999999999999999887642 2233322 111111100 0100 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||.. .+...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++..+
T Consensus 70 Dt~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 145 (179)
T 1z0f_A 70 DTAGQE----RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ 145 (179)
T ss_dssp ECTTGG----GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCCh----HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH
Confidence 999963 3345677888999999999999876544433 24444433 5689999999999863211 1222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 146 ~~~----~----~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 146 FAE----E----NGLLFLEASAKTG---------------------------ENVEDAFLEAAKKIY 177 (179)
T ss_dssp HHH----H----TTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHC
T ss_pred HHH----H----cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 221 1 2468999999987 688888888776654
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-15 Score=149.90 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=99.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+... ..++.. ......+.. ++.. ..+.+||
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~l~l~D 81 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVEL-------------RGKK---------IRLQIWD 81 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEE-------------CCeE---------EEEEEEe
Confidence 457899999999999999999999875432 222221 221111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||.. .....+..++..+|++|+|+|++++.+..+. .++..+. ..+.|+++|+||+|+..... ..++....
T Consensus 82 t~G~~----~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 157 (192)
T 2il1_A 82 TAGQE----RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF 157 (192)
T ss_dssp ECCSG----GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCcH----HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 99973 3455677888999999999999876554443 2334443 34689999999999864211 11222111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+ ...+++++||+++ .|++++.+.|.+.+.
T Consensus 158 -----~~~~--~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 158 -----AQQI--TGMRFCEASAKDN---------------------------FNVDEIFLKLVDDIL 189 (192)
T ss_dssp -----HHTS--TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHhc--CCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1111 2478999999987 688888888776554
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-15 Score=145.04 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=101.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|+|++..+.. ...+++.......... ++.. ..+.++|||
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D~~ 59 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEV-------------DSSP---------SVLEILDTA 59 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEECC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 5799999999999999999999876543 3334443222111110 1110 138899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.. ........++..+|++++|+|..++.+..+. .++..+ ...+.|+++|+||+|+....+ ..++.....
T Consensus 60 G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (167)
T 1kao_A 60 GTE----QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA 135 (167)
T ss_dssp CTT----CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred Cch----hhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH
Confidence 974 2344567788899999999999875443333 233333 234789999999999864211 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 136 -----~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 136 -----EEW---GCPFMETSAKSK---------------------------TMVDELFAEIVRQMN 165 (167)
T ss_dssp -----HHH---TSCEEEECTTCH---------------------------HHHHHHHHHHHHHHH
T ss_pred -----HHh---CCCEEEecCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 112 357999999987 678888887776543
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=152.98 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=83.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC--ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP--TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~--tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+|+|.+|+|||||+|+|++....+.+..| +|.......... ++ ..+.||
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~i~ii 76 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-------------GN-----------REIVII 76 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-------------TT-----------EEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-------------CC-----------CEEEEE
Confidence 5689999999999999999999999876655554 343322211110 11 258999
Q ss_pred eCCCCChhhh-------HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc-----CCeEEEEEe-CCCCCCC
Q 002437 441 DTPGTNVILQ-------RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW-----KKKVVFVLN-KSDLYQN 506 (921)
Q Consensus 441 DTPG~~~~~~-------~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~-----~~~vivVlN-K~D~~~~ 506 (921)
||||+..... .....+..+++.+|++|+|+|+++ ++..+..++..+.+. ..|+++|+| |+|+...
T Consensus 77 DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 77 DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 9999864321 113344557899999999999986 677776666666553 567777777 9999743
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-15 Score=144.76 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=101.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++..+. ....||+.......+.. .... ..+.++|||
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~~~~----------~~~~l~D~~ 59 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEV------------DCQQ----------CMLEILDTA 59 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEES------------SSCE----------EEEEEEEEC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEE------------CCEE----------EEEEEEECC
Confidence 478999999999999999999987653 33344443222111110 0111 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.... ......++..+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+..... ..++.....
T Consensus 60 G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (167)
T 1c1y_A 60 GTEQF----TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA 135 (167)
T ss_dssp SSCSS----TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ChHHH----HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHH
Confidence 97533 23566777889999999999875433332 2333333 24789999999999864311 112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.. + ...+++++||+++ .|++++.+.+.+.+
T Consensus 136 ----~~-~--~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 136 ----RQ-W--CNCAFLESSAKSK---------------------------INVNEIFYDLVRQI 165 (167)
T ss_dssp ----HH-T--TSCEEEECBTTTT---------------------------BSHHHHHHHHHHHH
T ss_pred ----HH-c--cCCcEEEecCCCC---------------------------CCHHHHHHHHHHHH
Confidence 11 1 2478999999987 68888888887665
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=145.95 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=101.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.++ ....+|... ...+.+ ++ ..+.+||
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~~~---------------~~-----------~~~~i~D 71 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNVEEIVI---------------NN-----------TRFLMWD 71 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSSCEEEEE---------------TT-----------EEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcCceeeEEEEE---------------CC-----------EEEEEEE
Confidence 468999999999999999999999875 122222210 001111 11 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||... ....+..++..+|++|+|+|++++.+..+. .++..+. ..+.|+++|+||+|+.... ..+++.+.
T Consensus 72 t~G~~~----~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~ 146 (181)
T 2h17_A 72 IGGQES----LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQF 146 (181)
T ss_dssp ESSSGG----GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHH
T ss_pred CCCCHh----HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-CHHHHHHH
Confidence 999843 334567788999999999999987665544 3444443 2568999999999997531 22233222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
+. .........+++++||+++ .|++++.+.|.+
T Consensus 147 ~~---~~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~ 179 (181)
T 2h17_A 147 LK---LTSIKDHQWHIQACCALTG---------------------------EGLCQGLEWMMS 179 (181)
T ss_dssp TT---GGGCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHT
T ss_pred hC---cccccCCceEEEEccCCCC---------------------------cCHHHHHHHHHh
Confidence 21 0111223458999999987 688888877764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-15 Score=169.25 Aligned_cols=142 Identities=22% Similarity=0.295 Sum_probs=91.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|+|+|........ .++|.+......... + ..+.+|||
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~-------------~-----------~~~~l~DT 58 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-------------N-----------YDFNLIDT 58 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC-------------S-----------SCCEEEC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC-------------C-----------ceEEEEEC
Confidence 3689999999999999999999987653333 334444333222111 1 25899999
Q ss_pred CCCCh----hhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNV----ILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~----~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||+.. ........+..++..||++|||+|+..+.+..+..+...++..++|+++|+||+|+.....+
T Consensus 59 ~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~--------- 129 (436)
T 2hjg_A 59 GGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN--------- 129 (436)
T ss_dssp --------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C---------
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh---------
Confidence 99852 22355666788889999999999999999988888888888889999999999998743111
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+++.....+++++||+.+
T Consensus 130 --~~~~~~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 130 --IYDFYSLGFGEPYPISGTHG 149 (436)
T ss_dssp --CCSSGGGSSCCCEECBTTTT
T ss_pred --HHHHHHcCCCCeEEEeCcCC
Confidence 11122212236899999987
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=156.81 Aligned_cols=152 Identities=21% Similarity=0.309 Sum_probs=91.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC------CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
..++|+++|.+|+|||||+|+|++.+..+.+.. ..|..+...... ...+|.. -.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~~~~---------~~ 66 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVL-----------IKEGGVQ---------LL 66 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEE-----------ECC--CC---------EE
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEE-----------EecCCeE---------EE
Confidence 358999999999999999999999887765542 111111111110 0011110 14
Q ss_pred cEEEeCCCCChh---hhHHHHHH-------HHhcC-------------CCCEEEEEEeCC-CCCCHHHHHHHHHhhhcCC
Q 002437 437 MIIVDTPGTNVI---LQRQQRLT-------EEFVP-------------RADLVLFVISAD-RPLTESEVVFLRYTQQWKK 492 (921)
Q Consensus 437 l~lvDTPG~~~~---~~~~~~~~-------~~~l~-------------~aD~il~V~da~-~~~t~~e~~~l~~l~~~~~ 492 (921)
++||||||++.. ......+. ..|+. ++|+++|+++.. .+....+..+++.+.. +.
T Consensus 67 l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~ 145 (274)
T 3t5d_A 67 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KV 145 (274)
T ss_dssp EEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TS
T ss_pred EEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cC
Confidence 899999998422 11112222 33332 378999999665 4788899999999988 89
Q ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 493 KVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 493 ~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
|+++|+||+|+.. ..+.....+.+.+.+.. ...+++++|++.+
T Consensus 146 pvi~V~nK~D~~~-~~e~~~~~~~i~~~l~~----~~i~v~~~sa~~~ 188 (274)
T 3t5d_A 146 NIIPLIAKADTLT-PEECQQFKKQIMKEIQE----HKIKIYEFPETDD 188 (274)
T ss_dssp CEEEEESSGGGSC-HHHHHHHHHHHHHHHHH----TTCCCCCC-----
T ss_pred CEEEEEeccCCCC-HHHHHHHHHHHHHHHHH----cCCeEEcCCCCCC
Confidence 9999999999974 45555555555554433 3567899998765
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=146.99 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=104.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+. ..++.. .+....+.. ++.. ..+.|||
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~D 70 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE-LAATIGVDFKVKTISV-------------DGNK---------AKLAIWD 70 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCccceEEEEEEEEE-------------CCeE---------EEEEEEe
Confidence 357999999999999999999998876432 233321 111111110 0100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||... +...+..++..+|++|+|+|++++.+..+. .++..+.. ...|+++|+||+|+.......++....
T Consensus 71 t~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 146 (195)
T 1x3s_A 71 TAGQER----FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF 146 (195)
T ss_dssp ECSSGG----GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred CCCchh----hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH
Confidence 999743 334567788999999999999876444333 34555544 357999999999995432222333222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
... ...+++++||+.+ .|++++.+.+.+.+..
T Consensus 147 ~~~--------~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 147 ARK--------HSMLFIEASAKTC---------------------------DGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HHH--------TTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHHT
T ss_pred HHH--------cCCEEEEecCCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 221 2468999999887 6888888888777654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=143.12 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=102.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-ee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|+|++..+.+.. .++.. .. ..+.+.. .. ..+.+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~----------~~~~~ 59 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDD--------------TT----------VKFEI 59 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETT--------------EE----------EEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECC--------------EE----------EEEEE
Confidence 3579999999999999999999987654322 22211 11 1111110 00 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~ 514 (921)
+||||... ....+..++..+|++|+|+|++++.+..+. .++..+.. ...|+++|+||+|+.... ...++..
T Consensus 60 ~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~ 135 (170)
T 1r2q_A 60 WDTAGQER----YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 135 (170)
T ss_dssp EEECCSGG----GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EeCCCcHH----hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHH
Confidence 99999743 334567788999999999999876543332 34555543 357899999999986421 1122222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.... . ...+++++||+++ .|++++.+.|.+.+.
T Consensus 136 ~~~~----~----~~~~~~~~Sa~~g---------------------------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 136 SYAD----D----NSLLFMETSAKTS---------------------------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp HHHH----H----TTCEEEECCTTTC---------------------------TTHHHHHHHHHHTSC
T ss_pred HHHH----H----cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 2211 1 2468999999987 688898888877654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=145.45 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=103.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|+|++..+........+..+....+.. ++.. ..+.+||
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~l~D 65 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-------------GGKY---------VKLQIWD 65 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-------------CCEE---------EEEEEEe
Confidence 34689999999999999999999988764432222221221111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
|||.. .....+..++..+|++|+|+|++++.+..+. .++..+. ..+.|+++|+||+|+.... ...++....
T Consensus 66 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 141 (186)
T 2bme_A 66 TAGQE----RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF 141 (186)
T ss_dssp ECCSG----GGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCcH----HHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 99973 4456688899999999999999876543333 2444333 3568999999999986321 111222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ....+++++||+++ .|++++.+.+.+.+.
T Consensus 142 ~~--------~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 142 AQ--------ENELMFLETSALTG---------------------------ENVEEAFVQCARKIL 172 (186)
T ss_dssp HH--------HTTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH--------HcCCEEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 12478999999987 678888777766554
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=147.51 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=105.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce---eEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE---ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+..++|+|+|.+|+|||||+|+|++..+.. ...++... ...+.+.. .. ..+.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~----------~~~~ 75 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTIGASFMTKTVPCGN--------------EL----------HKFL 75 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCSSEEEEEEEEECSS--------------SE----------EEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCcceeEEEEEEEeCC--------------EE----------EEEE
Confidence 356899999999999999999999877532 22233221 11111110 11 1489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v 513 (921)
||||||... ....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...+++
T Consensus 76 i~Dt~G~~~----~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~ 151 (192)
T 2fg5_A 76 IWDTAGQER----FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDA 151 (192)
T ss_dssp EEEECCSGG----GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred EEcCCCchh----hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHH
Confidence 999999743 334566788999999999999876554443 34555544 368999999999986421 112222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.. . ....+++++||+.+ .|++++.+.|.+.+.+
T Consensus 152 ~~~~----~----~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 152 KEYA----E----SIGAIVVETSAKNA---------------------------INIEELFQGISRQIPP 186 (192)
T ss_dssp HHHH----H----TTTCEEEECBTTTT---------------------------BSHHHHHHHHHHTCC-
T ss_pred HHHH----H----HcCCEEEEEeCCCC---------------------------cCHHHHHHHHHHHHHh
Confidence 2221 1 12478999999987 7899999999887653
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=144.05 Aligned_cols=158 Identities=18% Similarity=0.265 Sum_probs=97.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.. ...+++.......+.. ++.. ..+.||||
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 76 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVI-------------DGET---------CLLDILDT 76 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc-ccCCccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 35799999999999999999999876542 3334443221111110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+++.+..
T Consensus 77 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 152 (190)
T 3con_A 77 AGQE----EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA 152 (190)
T ss_dssp CC---------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH
T ss_pred CChH----HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH
Confidence 9963 3455677889999999999999876544433 23444433 3689999999999875322223332222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. + ..+++++||+++ .|++++.+.+.+.+.
T Consensus 153 ~~-----~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 153 KS-----Y---GIPFIETSAKTR---------------------------QGVEDAFYTLVREIR 182 (190)
T ss_dssp HH-----H---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH-----c---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 21 2 257999999987 688888888877665
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-15 Score=146.74 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=107.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......... ++.. ..+.+|||
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 60 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-------------DGKP---------VNLGLWDT 60 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEE-------------TTEE---------EEEEEECC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEE-------------CCEE---------EEEEEEEC
Confidence 3579999999999999999999987653 33444443322111100 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHH---
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAIS--- 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~--- 515 (921)
||... .......++..+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.......+...+
T Consensus 61 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 136 (186)
T 1mh1_A 61 AGQED----YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 136 (186)
T ss_dssp CCSGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred CCCHh----HHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhccccc
Confidence 99843 334566788999999999999876555544 355566543 7899999999999765322221111
Q ss_pred -----HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 516 -----FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 516 -----~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.....+....+ ..+++++||+++ .|++++.+.+.+.+..
T Consensus 137 ~~v~~~~~~~~~~~~~--~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 137 TPITYPQGLAMAKEIG--AVKYLECSALTQ---------------------------RGLKTVFDEAIRAVLC 180 (186)
T ss_dssp CCCCHHHHHHHHHHTT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHhcC--CcEEEEecCCCc---------------------------cCHHHHHHHHHHHHhc
Confidence 00111111122 248999999987 6899999998887764
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=145.70 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=83.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.. ...+++.....+.+.... + ..+.+|||
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~------------~-----------~~~~i~Dt 61 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNR------------G-----------NSLTLIDL 61 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC-BCCCCSCEEEEEECSSTT------------C-----------CEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCcceeeEEEEecCCC------------c-----------cEEEEEEC
Confidence 56899999999999999999999877533 233344333333222110 0 24899999
Q ss_pred CCCChhhhHHHH-HHHHhcCCCCEEEEEEeCCCCCC--HHHHHHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 443 PGTNVILQRQQR-LTEEFVPRADLVLFVISADRPLT--ESEVVFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 443 PG~~~~~~~~~~-~~~~~l~~aD~il~V~da~~~~t--~~e~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
||.. .... ++..++..+|++|||+|+++... .....++..+ ...+.|+++|+||+|+... ...+.+
T Consensus 62 ~G~~----~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~ 136 (214)
T 2fh5_B 62 PGHE----SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA-KSAKLI 136 (214)
T ss_dssp CCCH----HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC-CCHHHH
T ss_pred CCCh----hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc-ccHHHH
Confidence 9974 3333 67778999999999999986211 1111223222 1236899999999999754 234445
Q ss_pred HHHHHHHHH
Q 002437 514 ISFVKENTM 522 (921)
Q Consensus 514 ~~~~~~~~~ 522 (921)
.+.+.+.+.
T Consensus 137 ~~~l~~~l~ 145 (214)
T 2fh5_B 137 QQQLEKELN 145 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=144.04 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|.|++..+... ..|++ ..+....+... .+. ...+.++|
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~---------~~~~~l~D 64 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQ-YKATIGADFLTKEVTVD------------GDK---------VATMQVWD 64 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTT-C---CCCSCEEEEECCS------------SSC---------CEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCccceEEEEEEEEEc------------CCc---------EEEEEEEE
Confidence 568999999999999999999998775432 22322 22222221111 010 02489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-------cCCeEEEEEeCCCCCCChH--HHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-------WKKKVVFVLNKSDLYQNAF--ELE 511 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-------~~~~vivVlNK~D~~~~~~--~~~ 511 (921)
|||. +.....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..+
T Consensus 65 t~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~ 140 (182)
T 1ky3_A 65 TAGQ----ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140 (182)
T ss_dssp CC--------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH
T ss_pred CCCC----hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH
Confidence 9996 34455677889999999999999876543333 23444332 4679999999999863311 112
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...... . ....+++++||+.+ .|++++.+.+.+.+.
T Consensus 141 ~~~~~~~----~---~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 141 SAQELAK----S---LGDIPLFLTSAKNA---------------------------INVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHHH----H---TTSCCEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHHHHHH----h---cCCCeEEEEecCCC---------------------------CCHHHHHHHHHHHHH
Confidence 2222111 1 13478999999987 688888888876654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=146.00 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=104.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|+|++..+.. ...|+.......... .++.. ..+.|||
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~---------~~~~l~D 62 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVIS-------------CDKSV---------CTLQITD 62 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEE-------------ETTEE---------EEEEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEE-------------ECCEE---------EEEEEEe
Confidence 457899999999999999999999876532 233333221111000 01110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|||.. .+......++..+|++|+|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.......++...
T Consensus 63 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 138 (199)
T 2gf0_A 63 TTGSH----QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA 138 (199)
T ss_dssp CCGGG----SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred CCChH----HhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH
Confidence 99964 23456677888999999999998754333322 3333322 35799999999999753222222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
... .+ ..+++++||+.+ .|++++.+.+.+.+...
T Consensus 139 ~~~-----~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 139 VAQ-----EW---KCAFMETSAKMN---------------------------YNVKELFQELLTLETRR 172 (199)
T ss_dssp HHH-----HH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHCSSS
T ss_pred HHH-----Hh---CCeEEEEecCCC---------------------------CCHHHHHHHHHHHHhhh
Confidence 211 12 368999999987 68999999998887654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=149.33 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+... ..+++ ..+....+... +.. ..+.|||
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~------------~~~----------~~~~l~D 63 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVMVD------------DRL----------VTMQIWD 63 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSS-CCCCCSEEEEEEEEESS------------SCE----------EEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCcccceEEEEEEEEC------------CEE----------EEEEEEe
Confidence 568999999999999999999999876532 23332 22222111110 111 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-------cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-------WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-------~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
|||... +...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......++.
T Consensus 64 t~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 139 (207)
T 1vg8_A 64 TAGQER----FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRA 139 (207)
T ss_dssp ECSSGG----GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHH
T ss_pred CCCcHH----HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHH
Confidence 999742 233456778999999999999876443333 23333322 367999999999997432222222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..... . ....+++++||+.+ .|++++.+.|.+.+.
T Consensus 140 ~~~~~----~---~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 140 QAWCY----S---KNNIPYFETSAKEA---------------------------INVEQAFQTIARNAL 174 (207)
T ss_dssp HHHHH----H---TTSCCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHHHH----h---cCCceEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22211 1 13468999999987 688888888877665
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-15 Score=151.28 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|.|++..+. ....+++.......... ++.. ..+.++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~D 84 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-------------DGKP---------VNLGLWD 84 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEEC-------------C-CE---------EEEEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEE-------------CCEE---------EEEEEEE
Confidence 35789999999999999999999977653 33445554322211111 1110 1367999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHH--
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAIS-- 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~-- 515 (921)
|||.. .+......++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+...+
T Consensus 85 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 160 (204)
T 4gzl_A 85 TAGLE----DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160 (204)
T ss_dssp ECCSG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred CCCch----hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccc
Confidence 99974 3334566788999999999999987655554 355566554 7899999999999865332222111
Q ss_pred ------HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 ------FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ------~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.....+...+ ...+++++||+++ .|++++.+.+.+.+
T Consensus 161 ~~~v~~~~~~~~~~~~--~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 161 LTPITYPQGLAMAKEI--GAVKYLECSALTQ---------------------------RGLKTVFDEAIRAV 203 (204)
T ss_dssp CCCCCHHHHHHHHHHT--TCSEEEECCTTTC---------------------------TTHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHhc--CCcEEEEeeCCCC---------------------------CCHHHHHHHHHHHh
Confidence 0011111112 2357999999987 68888888877653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=153.14 Aligned_cols=151 Identities=21% Similarity=0.282 Sum_probs=87.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC--CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV--PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~--~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+++|.+|+|||||+|+|+|......+.. .+|..+....... ++ ..+.||
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~i~li 83 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-------------KE-----------TELVVV 83 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-------------TT-----------EEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-------------CC-----------ceEEEE
Confidence 568999999999999999999999987655544 3343332221111 11 258999
Q ss_pred eCCCCChhh-------hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhh-----hcCCeEEEEEeCCCCCCChH
Q 002437 441 DTPGTNVIL-------QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ-----QWKKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 441 DTPG~~~~~-------~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~-----~~~~~vivVlNK~D~~~~~~ 508 (921)
||||+.+.. ......+..+.+.+|++|+|+|+++ ++..+..++..+. ....|+++|+||+|+... .
T Consensus 84 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~-~ 161 (239)
T 3lxx_A 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD-T 161 (239)
T ss_dssp ECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC----
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc-c
Confidence 999986431 2333444555678999999999975 4445666665553 234699999999999754 2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccc
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~ 539 (921)
.+++......+.+..+......+++++++..
T Consensus 162 ~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (239)
T 3lxx_A 162 NLHDYLREAPEDIQDLMDIFGDRYCALNNKA 192 (239)
T ss_dssp ---------CHHHHHHHHHHSSSEEECCTTC
T ss_pred cHHHHHHhchHHHHHHHHHcCCEEEEEECCC
Confidence 3332222211222222222235677777653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-14 Score=155.37 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=108.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|+|++......+...+|..+........ + ..+.++|
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-------------~-----------~~~~l~D 220 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG-------------Y-----------FRYQIID 220 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET-------------T-----------EEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec-------------C-----------ceEEEEe
Confidence 457899999999999999999999987443344455554433221110 1 1489999
Q ss_pred CCCCChhhh-----HHHHHHHHhcCCCCEEEEEEeCCCCC--CHH-HHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHH
Q 002437 442 TPGTNVILQ-----RQQRLTEEFVPRADLVLFVISADRPL--TES-EVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 442 TPG~~~~~~-----~~~~~~~~~l~~aD~il~V~da~~~~--t~~-e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|||+..... -.......+...+|++|+|+|++.+. +.. ...++..+.. .+.|+++|+||+|+... .+++
T Consensus 221 t~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~-~~~~ 299 (357)
T 2e87_A 221 TPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE-ENIK 299 (357)
T ss_dssp CTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH-HHHH
T ss_pred CCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh-HHHH
Confidence 999843211 11223345556799999999987654 433 3456666654 27899999999999743 3333
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...... ....+++++||+++ .|++++.+.+.+.+.
T Consensus 300 ~~~~~~~--------~~~~~~~~iSA~~g---------------------------~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 300 RLEKFVK--------EKGLNPIKISALKG---------------------------TGIDLVKEEIIKTLR 335 (357)
T ss_dssp HHHHHHH--------HTTCCCEECBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHHHH--------hcCCCeEEEeCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 3322221 12468999999987 799999998887765
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=144.29 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=101.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+ ...+|+. ......... ++.. ..+.++|
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D 60 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQV-------------NDED---------VRLMLWD 60 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEE-------------TTEE---------EEEEEEC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEE-------------CCEE---------EEEEEEc
Confidence 46899999999999999999999876543 2233322 211111110 0100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|||.. +....+..++..+|++++|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++.....
T Consensus 61 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 136 (168)
T 1z2a_A 61 TAGQE----EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA 136 (168)
T ss_dssp CTTGG----GTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred CCCcH----hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHH
Confidence 99964 2334466788999999999999875433332 34444443 3789999999999864211 122222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. . . ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 137 ~----~-~---~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 137 K----R-L---KLRFYRTSVKED---------------------------LNVSEVFKYLAEKHL 166 (168)
T ss_dssp H----H-H---TCEEEECBTTTT---------------------------BSSHHHHHHHHHHHH
T ss_pred H----H-c---CCeEEEEecCCC---------------------------CCHHHHHHHHHHHHh
Confidence 1 1 2 368999999887 688888888776553
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=144.41 Aligned_cols=157 Identities=23% Similarity=0.362 Sum_probs=98.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++..........+|.......+.. ++ ..+.+||||
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~l~i~Dt~ 58 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-------------NG-----------EKFKVVDLP 58 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-------------TT-----------EEEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-------------CC-----------cEEEEEECC
Confidence 478999999999999999999997653322222222211111100 01 148999999
Q ss_pred CCChhhh--HHHHHHHHhcC--CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 444 GTNVILQ--RQQRLTEEFVP--RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~--~~~~~~~~~l~--~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|+..... ....+...++. .+|++++|+|+.+. .....++..+.+.+.|+++|.||+|+.... ......+
T Consensus 59 G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~---- 131 (165)
T 2wji_A 59 GVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSL-GIEIDVD---- 131 (165)
T ss_dssp CCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHT-TCCCCHH----
T ss_pred CcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcccc-ChhhHHH----
Confidence 9864321 22345556654 89999999999863 333456666767789999999999975210 0000011
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+...++ .+++++||+++ .|++++.+.+.+.+
T Consensus 132 ~~~~~~~---~~~~~~SA~~~---------------------------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 132 KLEKILG---VKVVPLSAAKK---------------------------MGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHT---SCEEECBGGGT---------------------------BSHHHHHHHHHHHT
T ss_pred HHHHHhC---CCEEEEEcCCC---------------------------CCHHHHHHHHHHHh
Confidence 1112222 57999999987 68888888877654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=146.87 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=105.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......+.. ++.. ..+.||||
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 69 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-------------DGEE---------VQIDILDT 69 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEE-------------CCEE---------EEEEEEcC
Confidence 4689999999999999999999988753 34455554332221110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||.. .+...+..++..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.... ...+++...
T Consensus 70 ~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (206)
T 2bov_A 70 AGQE----DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145 (206)
T ss_dssp CCTT----CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CChh----hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHH
Confidence 9974 3345677788899999999999876443333 34444433 368999999999986431 112333332
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ..++|++||+++ .|++++...|.+.+.
T Consensus 146 ~~~-----~---~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 146 AEQ-----W---NVNYVETSAKTR---------------------------ANVDKVFFDLMREIR 176 (206)
T ss_dssp HHH-----H---TCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----h---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 1 358999999987 688888888877654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=143.18 Aligned_cols=157 Identities=22% Similarity=0.404 Sum_probs=99.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|+|++..+.......+|.....+.+ ..+.++||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~----------------------------~~~~l~Dt~G 53 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW----------------------------KNHKIIDMPG 53 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE----------------------------TTEEEEECCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec----------------------------CCEEEEECCC
Confidence 689999999999999999999987543322223322222211 1489999999
Q ss_pred CChh-------hhHHHHHHHHh----cCCCCEEEEEEeCCCCC-----------CHHHHHHHHHhhhcCCeEEEEEeCCC
Q 002437 445 TNVI-------LQRQQRLTEEF----VPRADLVLFVISADRPL-----------TESEVVFLRYTQQWKKKVVFVLNKSD 502 (921)
Q Consensus 445 ~~~~-------~~~~~~~~~~~----l~~aD~il~V~da~~~~-----------t~~e~~~l~~l~~~~~~vivVlNK~D 502 (921)
+... .+.....+..+ ...++++++|+|.+... ...+.+++..+...+.|+++|+||+|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (190)
T 2cxx_A 54 FGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLD 133 (190)
T ss_dssp BSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHh
Confidence 6422 23334444444 44577888998876321 11223344555567899999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCC----CCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHH
Q 002437 503 LYQNAFELEEAISFVKENTMKLLNIE----NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLY 578 (921)
Q Consensus 503 ~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~ 578 (921)
+.... .+..+.+.. .++.. ..+++++||+++ .|++++.+.+.
T Consensus 134 l~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~---------------------------~~v~~l~~~l~ 179 (190)
T 2cxx_A 134 KIKNV---QEVINFLAE----KFEVPLSEIDKVFIPISAKFG---------------------------DNIERLKNRIF 179 (190)
T ss_dssp GCSCH---HHHHHHHHH----HHTCCGGGHHHHEEECCTTTC---------------------------TTHHHHHHHHH
T ss_pred ccCcH---HHHHHHHHH----HhhhhhhccCCcEEEEecCCC---------------------------CCHHHHHHHHH
Confidence 98653 111222222 22321 236899999987 68888888888
Q ss_pred Hhhcc
Q 002437 579 SFLDG 583 (921)
Q Consensus 579 ~~l~~ 583 (921)
+.+.+
T Consensus 180 ~~~~~ 184 (190)
T 2cxx_A 180 EVIRE 184 (190)
T ss_dssp HHHHH
T ss_pred Hhcch
Confidence 77653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=145.61 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=102.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.... .+++. .+....... ++.. ..+.++|
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~---------~~~~~~D 69 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYL-------------EDRT---------VRLQLWD 69 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeeEEEEEEEEE-------------CCeE---------EEEEEEE
Confidence 3479999999999999999999987764332 33322 222111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||... ....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 70 t~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (179)
T 2y8e_A 70 TAGQER----FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 145 (179)
T ss_dssp ECCSGG----GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCcHH----HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHH
Confidence 999743 334566778899999999999875443332 34444432 4689999999999864311 12222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . . ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 146 ~~----~-~---~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 146 AK----E-L---NVMFIETSAKAG---------------------------YNVKQLFRRVAAALP 176 (179)
T ss_dssp HH----H-H---TCEEEEEBTTTT---------------------------BSHHHHHHHHHHTCC
T ss_pred HH----H-c---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 21 1 1 368999999887 688898888887664
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=148.23 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=104.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|.+..+. ....||+......... .++.. ..+.||||
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt 80 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIE-------------VDGKQ---------VELALWDT 80 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEE-------------ETTEE---------EEEEEECC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEE-------------ECCEE---------EEEEEEEC
Confidence 3579999999999999999999987753 3333443221111110 01110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHH---
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAIS--- 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~--- 515 (921)
||.. .+......++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+.+.+
T Consensus 81 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 156 (201)
T 2gco_A 81 AGQE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQ 156 (201)
T ss_dssp CCSG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTC
T ss_pred CCch----hHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhccccc
Confidence 9974 2334456788999999999999876544443 355555543 7899999999999865332221110
Q ss_pred -----HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 -----FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 -----~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.....+...++ ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 157 ~~v~~~~~~~~~~~~~--~~~~~~~SA~~g---------------------------~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 157 EPVRSEEGRDMANRIS--AFGYLECSAKTK---------------------------EGVREVFEMATRAGL 199 (201)
T ss_dssp CCCCHHHHHHHHHHTT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHhCC--CcEEEEeeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 00111111112 237999999987 688888888876543
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-15 Score=149.47 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=102.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+.+.. .++.. .+....... ++.. ..+.+||
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~D 77 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTVYR-------------HDKR---------IKLQIWD 77 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCCCCCEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCc-CCceeEEEEEEEEEE-------------CCeE---------EEEEEEe
Confidence 3579999999999999999999988764322 22221 111111100 0100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++..+.
T Consensus 78 t~G~~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (189)
T 2gf9_A 78 TAGQERY----RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL 153 (189)
T ss_dssp CCSCCSS----CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CCCcHHH----hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence 9997432 23466788999999999999875443333 35555554 3689999999999864311 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .+ ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 154 ~~-----~~---~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 154 AD-----DL---GFEFFEASAKEN---------------------------INVKQVFERLVDVIC 184 (189)
T ss_dssp HH-----HH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----Hc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 12 358999999987 688888888876654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.3e-15 Score=148.42 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=103.6
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+..++|+|+|.+|+|||||+|+|++..+...........+....... .... ..+.||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~------------~~~~----------~~~~i~ 79 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML------------GTAA----------VKAQIW 79 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE------------TTEE----------EEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE------------CCEE----------EEEEEE
Confidence 345689999999999999999999998765432221111111111100 0000 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 80 Dt~G~~~~----~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 155 (193)
T 2oil_A 80 DTAGLERY----RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARM 155 (193)
T ss_dssp EESCCCTT----CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred eCCCchhh----hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHH
Confidence 99998532 34567788999999999999876443332 34555543 3679999999999864211 1222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ...+++++||+.+ .|++++.+.|.+.+.
T Consensus 156 ~~~-----~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 156 FAE-----N---NGLLFLETSALDS---------------------------TNVELAFETVLKEIF 187 (193)
T ss_dssp HHH-----H---TTCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----H---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 1 2468999999887 688888888776654
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=144.21 Aligned_cols=158 Identities=21% Similarity=0.218 Sum_probs=104.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......+.. ++.. ..+.||||
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 73 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-------------DGEE---------VQIDILDT 73 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4689999999999999999999987753 34444544322211110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||.. .....+..++..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.... ...+++.+.
T Consensus 74 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 149 (187)
T 2a9k_A 74 AGQE----DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 149 (187)
T ss_dssp CCTT----CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCc----ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH
Confidence 9974 2345677788899999999999876443332 33444432 368999999999986421 112233222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . ...+++++||+++ .|++++.+.|.+.+.
T Consensus 150 ~~----~----~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 150 AE----Q----WNVNYVETSAKTR---------------------------ANVDKVFFDLMREIR 180 (187)
T ss_dssp HH----H----TTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH----H----cCCeEEEeCCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 21 1 2468999999987 688888888877654
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=148.33 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=103.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|+|++..+... ..|++ ..+....+.. ++.. ..+.||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~ 62 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND-YISTIGVDFKIKTVEL-------------DGKT---------VKLQIW 62 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT-CCCSSCCCEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEE-------------CCEE---------EEEEEE
Confidence 3468999999999999999999998876432 22322 2222111110 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||... +...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 63 Dt~G~~~----~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 138 (206)
T 2bcg_Y 63 DTAGQER----FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKE 138 (206)
T ss_dssp CCTTTTT----TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred eCCChHH----HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH
Confidence 9999743 233466788999999999999876544443 24444443 4589999999999975311 1122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .. ...+++++||+.+ .|++++...+.+.+.
T Consensus 139 ~~-----~~---~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 139 FA-----DA---NKMPFLETSALDS---------------------------TNVEDAFLTMARQIK 170 (206)
T ss_dssp HH-----HH---TTCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH-----HH---cCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 21 11 2368999999887 678888887776655
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-15 Score=153.12 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=102.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee-EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI-TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+|+|.+|+|||||+|+|++..+. ....+++... ....+.. ..+.. ..+.+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~------------~~~~~---------~~~~l~ 66 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLD------------DQGNV---------IKFNVW 66 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEB------------TTSCE---------EEEEEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEe------------CCCcE---------EEEEEE
Confidence 35689999999999999999999987654 2222332211 1111111 01110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||||... .......++..+|++|+|+|++++.+..+. .++..+. ..+.|+++|+||+|+..... +..
T Consensus 67 Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~- 137 (218)
T 4djt_A 67 DTAGQEK----KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----ISK- 137 (218)
T ss_dssp EECSGGG----TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--------CCH-
T ss_pred ecCCchh----hchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCH-
Confidence 9999742 223455678899999999999976554443 2334443 34689999999999875311 111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.....+......+++++||+++ .|++++...+.+.+.+.
T Consensus 138 --~~~~~~~~~~~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 138 --KLVMEVLKGKNYEYFEISAKTA---------------------------HNFGLPFLHLARIFTGR 176 (218)
T ss_dssp --HHHHHHTTTCCCEEEEEBTTTT---------------------------BTTTHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHcCCcEEEEecCCC---------------------------CCHHHHHHHHHHHHhcc
Confidence 1112222334578999999987 57888888877776553
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=145.96 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=107.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|+|++..+ +....||+......... .++.. ..+.++|
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~-------------~~~~~---------~~~~i~D 77 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMK-------------YKNEE---------FILHLWD 77 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEE-------------ETTEE---------EEEEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEE-------------ECCEE---------EEEEEEE
Confidence 3568999999999999999999998875 33444554332211111 01110 1379999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCCh---HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNA---FELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~---~~~~~v~ 514 (921)
|||.. .+......++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.... ...++..
T Consensus 78 t~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 153 (194)
T 3reg_A 78 TAGQE----EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGD 153 (194)
T ss_dssp ECCSG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHH
T ss_pred CCCcH----HHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHH
Confidence 99963 3345577788999999999999987555553 355555543 57999999999987431 1122222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.... .++ ...++++||+++ .|++++.+.+.+.+..
T Consensus 154 ~~~~-----~~~--~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 154 DLCQ-----KLG--CVAYIEASSVAK---------------------------IGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHH-----HHT--CSCEEECBTTTT---------------------------BSHHHHHHHHHHHHHC
T ss_pred HHHH-----hcC--CCEEEEeecCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 2211 122 233999999987 6899998888877654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=146.07 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=103.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|.+..+.. ..||+. ........ ++ ..+.++||
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~~~Dt 73 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVPTVG-VNLETLQY-------------KN-----------ISFEVWDL 73 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECSSTT-CCEEEEEE-------------TT-----------EEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--cCCCCc-eEEEEEEE-------------CC-----------EEEEEEEC
Confidence 67999999999999999999998876532 233332 11110000 01 24899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ..+++.+..
T Consensus 74 ~G~~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~ 148 (189)
T 2x77_A 74 GGQTGV----RPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-SEAEIAEQL 148 (189)
T ss_dssp CCSSSS----CCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-CHHHHHHHT
T ss_pred CCCHhH----HHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-CHHHHHHHh
Confidence 997432 22355678899999999999987665543 33444322 468999999999997542 222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .........+++++||+.+ .|++++.+.+.+.+.
T Consensus 149 ~---~~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 149 G---VSSIMNRTWTIVKSSSKTG---------------------------DGLVEGMDWLVERLR 183 (189)
T ss_dssp T---GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred C---hhhccCCceEEEEccCCCc---------------------------cCHHHHHHHHHHHHH
Confidence 1 1112223458999999887 688888888877665
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=144.91 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.++.. ..||.. +....... .+ ..+.++||
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~t~~-~~~~~~~~-------------~~-----------~~~~i~Dt 80 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVETVEY-------------KN-----------ICFTVWDV 80 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEEETT-EEEEEEEE-------------TT-----------EEEEEEEC
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--cCCcCc-eeEEEEEE-------------CC-----------EEEEEEEC
Confidence 56899999999999999999999876531 223222 11111100 01 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+... ...+++.+..
T Consensus 81 ~G~~----~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~ 155 (192)
T 2b6h_A 81 GGQD----KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA-MPVSELTDKL 155 (192)
T ss_dssp C---------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHHT
T ss_pred CCCH----hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-CCHHHHHHHh
Confidence 9974 2334566788999999999999987554443 34444432 36899999999999754 1222222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .........+++++||+++ .|++++.+.+.+.+.
T Consensus 156 ~---~~~~~~~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 156 G---LQHLRSRTWYVQATCATQG---------------------------TGLYDGLDWLSHELS 190 (192)
T ss_dssp T---GGGCSSCCEEEEECBTTTT---------------------------BTHHHHHHHHHHHTT
T ss_pred C---cccccCCceEEEECcCCCc---------------------------CCHHHHHHHHHHHHh
Confidence 1 1112223467999999987 688888888877654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=150.15 Aligned_cols=163 Identities=18% Similarity=0.234 Sum_probs=92.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....||+.......... ++.. ..+.||||
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~l~Dt 89 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQV-------------KGKP---------VHLHIWDT 89 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999987653 33444443222111110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH----
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI---- 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~---- 514 (921)
||.. ........++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.......+...
T Consensus 90 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 165 (214)
T 2j1l_A 90 AGQD----DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGL 165 (214)
T ss_dssp -------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTC
T ss_pred CCch----hhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhccccc
Confidence 9963 4445677788999999999999876554443 35555544 3679999999999986532211110
Q ss_pred -----HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 -----SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 -----~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+... .+...++ ..+++++||+++ .|++++.+.+.+.+.
T Consensus 166 ~~v~~~~~~-~~~~~~~--~~~~~~~SA~~g---------------------------~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 166 EPVTYHRGQ-EMARSVG--AVAYLECSARLH---------------------------DNVHAVFQEAAEVAL 208 (214)
T ss_dssp CCCCHHHHH-HHHHHTT--CSEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred CcccHHHHH-HHHHhcC--CCEEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 0111 1111122 248999999987 688888888877765
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=164.48 Aligned_cols=163 Identities=22% Similarity=0.281 Sum_probs=112.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC------CCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL------KDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~------~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
..++|+++|.+++|||||+|+|++.... +.. ....|.......+. .++ .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-------------~~~-----------~ 73 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-------------LEN-----------Y 73 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-------------ETT-----------E
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-------------ECC-----------E
Confidence 3579999999999999999999987611 100 01111111000000 011 2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
.+.||||||. +.+...+..++..+|++|+|+|++++...+..+.+..+...+.|+++|+||+|+.. ++..+.+.+
T Consensus 74 ~i~iiDtPGh----~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~-~~~~~~~~~ 148 (482)
T 1wb1_A 74 RITLVDAPGH----ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-TEEIKRTEM 148 (482)
T ss_dssp EEEECCCSSH----HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-HHHHHHHHH
T ss_pred EEEEEECCCh----HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc-chhHHHHHH
Confidence 5899999996 44556677888999999999999988888888888878888899999999999984 344555555
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+.+.+....+....+++++||+++ .|+++|.+.|.+.+
T Consensus 149 ~l~~~l~~~~~~~~~~ii~vSA~~g---------------------------~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 149 IMKSILQSTHNLKNSSIIPISAKTG---------------------------FGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHHHHSSSGGGCCEEECCTTTC---------------------------TTHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccceEEEEECcCC---------------------------CCHHHHHHHHHHhh
Confidence 5555444321223578999999886 57777777777654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=166.23 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=93.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|+|.+....... .+|........... + ..+.+||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~-------------~-----------~~~~liD 77 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-------------N-----------YDFNLID 77 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC-------------S-----------SCCEEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC-------------C-----------ceEEEEE
Confidence 357999999999999999999999876533332 34433333222111 1 2589999
Q ss_pred CCCCChh----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 442 TPGTNVI----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 442 TPG~~~~----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|||+... .++....+..++..+|++|||+|+..+++..+..+++.++..++|+++|+||+|+.....
T Consensus 78 T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~--------- 148 (456)
T 4dcu_A 78 TGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--------- 148 (456)
T ss_dssp CCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----------------
T ss_pred CCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh---------
Confidence 9997522 345566788888999999999999999999999999999989999999999999864311
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
...+++......++++||+.+
T Consensus 149 --~~~e~~~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 149 --NIYDFYSLGFGEPYPISGTHG 169 (456)
T ss_dssp ----CCSGGGSSSSEEECCTTTC
T ss_pred --hHHHHHHcCCCceEEeecccc
Confidence 111222222345789999886
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-15 Score=152.34 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=98.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-ee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|+|++..+.. ...++.. .+ ..+.+. +.. ..+.|
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~---------------~~~---------~~l~i 81 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVD---------------GER---------TVLQL 81 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEET---------------TEE---------EEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEEC---------------CEE---------EEEEE
Confidence 56899999999999999999999876532 2222221 11 111111 110 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH--HHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF--ELEEA 513 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~--~~~~v 513 (921)
|||||.. .....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ....+
T Consensus 82 ~Dt~G~~----~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v 157 (199)
T 2p5s_A 82 WDTAGQE----RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV 157 (199)
T ss_dssp EECTTCT----TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCC
T ss_pred EECCCCc----chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccccccccc
Confidence 9999974 3345677888999999999999876544433 34444443 4689999999999862100 00000
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+.... ..+++++||+++ .|++++...+.+.+.
T Consensus 158 ~~~~~~~~~~~~---~~~~~~~SA~~g---------------------------~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 158 PGHFGEKLAMTY---GALFCETSAKDG---------------------------SNIVEAVLHLAREVK 196 (199)
T ss_dssp CHHHHHHHHHHH---TCEEEECCTTTC---------------------------TTHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHc---CCeEEEeeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 011111111112 368999999987 688888888877654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=147.21 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=104.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
.+..++|+|+|.+|+|||||+|+|++..+.+ ...+|.. .+....+.. ++.. ..+.|
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~l 79 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEI-------------NGEK---------VKLQI 79 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEE-------------TTEE---------EEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEE-------------CCEE---------EEEEE
Confidence 3456899999999999999999999876543 2333322 111111100 1110 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||||. +.+...+..++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..++..
T Consensus 80 ~Dt~G~----~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~ 155 (201)
T 2ew1_A 80 WDTAGQ----ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE 155 (201)
T ss_dssp EEECCS----GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred EECCCc----HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHH
Confidence 999997 34556788899999999999999876443332 34444433 4679999999999863211 112222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ... ..+++++||+.+ .|++++...+.+.+.
T Consensus 156 ~~~-----~~~---~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 156 EFS-----EAQ---DMYYLETSAKES---------------------------DNVEKLFLDLACRLI 188 (201)
T ss_dssp HHH-----HHH---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----HHc---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 111 368999999987 688888888776654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-14 Score=141.07 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=104.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|+|.+..+. ...||.. ++..... . ++ ..+.++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~--~~~~t~g-~~~~~~~------------~-~~-----------~~l~i~D 66 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS--HITPTQG-FNIKSVQ------------S-QG-----------FKLNVWD 66 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE--EEEEETT-EEEEEEE------------E-TT-----------EEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC--cccCcCC-eEEEEEE------------E-CC-----------EEEEEEE
Confidence 35789999999999999999999987542 1222222 1110000 0 01 2489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-h---hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-Q---QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~---~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||.. .....+..++..+|++++|+|++++.+..+. .++..+ . ..+.|+++|+||+|+.... ..+++.+.
T Consensus 67 t~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~ 141 (181)
T 1fzq_A 67 IGGQR----KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEG 141 (181)
T ss_dssp CSSCG----GGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHH
T ss_pred CCCCH----HHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-CHHHHHHH
Confidence 99974 3445677888999999999999876554443 344433 2 2468999999999997542 22222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+. .........+++++||+++ .|++++.+.+.+.+.
T Consensus 142 ~~---~~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 142 LN---LHTIRDRVWQIQSCSALTG---------------------------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp TT---GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHTC-
T ss_pred hC---chhccCCceEEEEccCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 0111223467999999987 689999888887765
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=143.51 Aligned_cols=159 Identities=21% Similarity=0.135 Sum_probs=92.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|+|++.........+++.......... ++.. ..+.++|||
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~D~~ 59 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-------------DKEE---------VTLIVYDIW 59 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-------------TTEE---------EEEEEECCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-------------CCeE---------EEEEEEECC
Confidence 478999999999999999999987654333333332222211110 1110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|..... ..+...++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 60 g~~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~- 135 (169)
T 3q85_A 60 EQGDAG---GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL- 135 (169)
T ss_dssp CC-----------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-
T ss_pred Cccccc---hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH-
Confidence 984321 12444556789999999999875443333 34444433 3689999999999863211 11222111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ...+++++||+++ .|++++.+.+.+.+.
T Consensus 136 ----~~~---~~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 136 ----AGT---LSCKHIETSAALH---------------------------HNTRELFEGAVRQIR 166 (169)
T ss_dssp ----HHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred ----HHH---cCCcEEEecCccC---------------------------CCHHHHHHHHHHHHH
Confidence 111 2468999999987 688888888776654
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.7e-15 Score=149.88 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=103.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+........... ... ..+.||||
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~------------~~~----------~~~~l~Dt 79 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLG------------KDE----------FHLHLVDT 79 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----------------C----------EEEEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEC------------CEE----------EEEEEEEC
Confidence 5689999999999999999999988765 333444432221111100 000 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||.... ...+..++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 80 ~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 155 (201)
T 3oes_A 80 AGQDEY----SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL 155 (201)
T ss_dssp CCCCTT----CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CCccch----HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH
Confidence 997432 23466788999999999999876444433 34444433 3679999999999864311 11222111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.... ..+++++||+.+ .|++++.+.+.+.+..
T Consensus 156 -----~~~~---~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 156 -----AESW---GATFMESSAREN---------------------------QLTQGIFTKVIQEIAR 187 (201)
T ss_dssp -----HHHH---TCEEEECCTTCH---------------------------HHHHHHHHHHHHHHHH
T ss_pred -----HHHh---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 1122 368999999987 5788888887776654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=143.58 Aligned_cols=158 Identities=23% Similarity=0.245 Sum_probs=102.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+.......+.. ++.. ..+.+|||
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~~~Dt 64 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSV-------------DGIP---------ARLDILDT 64 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4689999999999999999999988643 34445554322111110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||.... ......++..+|++++|+|.+++.+..+. .++..+ ...+.|+++|+||+|+..... ..++....
T Consensus 65 ~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 140 (181)
T 2fn4_A 65 AGQEEF----GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140 (181)
T ss_dssp CCTTTT----SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCchhh----HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 997432 33456677889999999999875443333 233333 335689999999999864211 11222111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... ...+++++||+.+ .|++++.+.+.+.+.
T Consensus 141 -----~~~---~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 141 -----GAS---HHVAYFEASAKLR---------------------------LNVDEAFEQLVRAVR 171 (181)
T ss_dssp -----HHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHH---cCCeEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 111 2468999999987 688888888877665
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=146.32 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|+|++..+.. ...||+. .+....+.. ++.. ..+.||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~ 62 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIEL-------------DGKR---------IKLQIW 62 (183)
T ss_dssp SEEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEE-------------CCEE---------EEEEEE
Confidence 346899999999999999999999876432 2223322 111111110 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||||.. .+...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++...
T Consensus 63 Dt~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 138 (183)
T 2fu5_C 63 DTAGQE----RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEK 138 (183)
T ss_dssp EC-------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHH
T ss_pred cCCCCh----hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHH
Confidence 999963 3445567788999999999999876543333 35555544 3679999999999975311 1222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . . ..+++++||+++ .|++++...+.+.+.
T Consensus 139 ~~~----~-~---~~~~~~~Sa~~~---------------------------~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 139 LAL----D-Y---GIKFMETSAKAN---------------------------INVENAFFTLARDIK 170 (183)
T ss_dssp HHH----H-H---TCEEEECCC------------------------------CCHHHHHHHHHHHHH
T ss_pred HHH----H-c---CCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 1 2 368999999987 688888888876654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-15 Score=148.24 Aligned_cols=159 Identities=21% Similarity=0.210 Sum_probs=100.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++.++.+......+..+....+.. ++.. ..+.|+||
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 77 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-------------DGKQ---------IKLQIWDT 77 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-------------TTEE---------EEEEEECC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 3579999999999999999999988765432222222221111110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||... ....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++.....
T Consensus 78 ~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 153 (191)
T 2a5j_A 78 AGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFA 153 (191)
T ss_dssp TTGGG----TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCchh----hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHH
Confidence 99642 233466788999999999999875444332 35555543 3689999999999864211 112222222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. . . ..+++++||+++ .|++++.+.|.+.+.
T Consensus 154 ~----~-~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 154 R----E-H---GLIFMETSAKTA---------------------------CNVEEAFINTAKEIY 183 (191)
T ss_dssp H----H-H---TCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred H----H-c---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 1 1 368999999887 688888888776654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.7e-15 Score=148.51 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=102.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee--EEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI--TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
+..++|+|+|.+|+|||||+|.|++..+.+......+... ..+.... .. ..+.|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~----------~~~~i 76 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE--------------KR----------VKLQI 76 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT--------------TT----------EEEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC--------------EE----------EEEEE
Confidence 3468999999999999999999998765432111111111 1111110 00 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
|||||. +........++..+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..++..
T Consensus 77 ~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 152 (191)
T 3dz8_A 77 WDTAGQ----ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQ 152 (191)
T ss_dssp ECHHHH----HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EeCCCh----HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHH
Confidence 999995 44556788889999999999999875443332 34555544 4689999999999853211 112221
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 153 ~~-----~~~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 153 LL-----AEQL---GFDFFEASAKEN---------------------------ISVRQAFERLVDAIC 185 (191)
T ss_dssp HH-----HHHH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----HHHc---CCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 1112 368999999987 688888888776654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=145.39 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=98.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+ +....||+.......+ ..++.. ..+.++||
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~-------------~~~~~~---------~~~~i~Dt 63 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANV-------------VVNGAT---------VNLGLWDT 63 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCC-------------C----------------CEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEE-------------EECCEE---------EEEEEEEC
Confidence 468999999999999999999998764 2334444432110000 001110 14779999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhhc--CCeEEEEEeCCCCCCChHHHHH------
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQW--KKKVVFVLNKSDLYQNAFELEE------ 512 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~------ 512 (921)
||... ....+..++..+|++++|+|++++.+..+.. ++..+... +.|+++|+||+|+.........
T Consensus 64 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 139 (182)
T 3bwd_D 64 AGQED----YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVP 139 (182)
T ss_dssp CC-CT----TTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCC
T ss_pred CCChh----hhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCC
Confidence 99743 2345667889999999999998765554442 55555542 6899999999998755321000
Q ss_pred -HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 -AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 -v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...... .+...++ ..+++++||+++ .|++++.+.+.+.+.
T Consensus 140 v~~~~~~-~~~~~~~--~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 140 ITTVQGE-ELKKLIG--APAYIECSSKSQ---------------------------ENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCHHHHH-HHHHHHT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHS
T ss_pred CCHHHHH-HHHHHcC--CCEEEEEECCCC---------------------------CCHHHHHHHHHHHHh
Confidence 001111 1122222 248999999987 688888888876654
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=147.97 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=101.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+|+|.+|+|||||+|.|++..+ +....||+.......+.. ++.. ..+.+||
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~D 74 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSV-------------DGRP---------VRLQLCD 74 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEE-------------CCEE---------EEEEEEE
Confidence 3578999999999999999999998873 345556664332211110 1110 1378999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHH----
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEA---- 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v---- 513 (921)
|||.... ...+..++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+..........
T Consensus 75 t~G~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 150 (201)
T 2q3h_A 75 TAGQDEF----DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCK 150 (201)
T ss_dssp CCCSTTC----SSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred CCCCHHH----HHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccc
Confidence 9998432 23455688999999999999976655554 355555543 68999999999997542111110
Q ss_pred ----HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ----ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ----~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+...++ ..+++++||+++ .|++++.+.+.+.+.
T Consensus 151 ~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 151 EKPVPEEAAKLLAEEIK--AASYIECSALTQ---------------------------KNLKEVFDAAIVAGI 194 (201)
T ss_dssp CCCCCHHHHHHHHHHHT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhcC--CcEEEEEecCCC---------------------------CCHHHHHHHHHHHHh
Confidence 0000111111222 248999999987 688888888876654
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=146.90 Aligned_cols=162 Identities=16% Similarity=0.185 Sum_probs=105.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|+|++..+ +....||+.......+.. ++.. ..+.+||||
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~D~~ 74 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTV-------------GGKQ---------YLLGLYDTA 74 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEES-------------SSCE---------EEEEEECCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEE-------------CCEE---------EEEEEEECC
Confidence 47999999999999999999998764 344455554322111110 1110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHH------
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEA------ 513 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v------ 513 (921)
|.... ......++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+..
T Consensus 75 G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (194)
T 2atx_A 75 GQEDY----DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK 150 (194)
T ss_dssp CSSSS----TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred CCcch----hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCc
Confidence 97532 24466788999999999999876544443 356666654 78999999999998653211110
Q ss_pred ---HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ---ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ---~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+... .+...++ ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 151 ~v~~~~~~-~~~~~~~--~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 151 PICVEQGQ-KLAKEIG--ACCYVECSALTQ---------------------------KGLKTVFDEAIIAIL 192 (194)
T ss_dssp CCCHHHHH-HHHHHHT--CSCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred ccCHHHHH-HHHHHcC--CcEEEEeeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 01111 1111122 237999999987 688888888776543
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=143.80 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=101.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++.++. ...||... ...+.+. + ..+.++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~~~~~---------------~-----------~~~~i~ 67 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV--TTKPTIGFNVETLSYK---------------N-----------LKLNVW 67 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE--EECSSTTCCEEEEEET---------------T-----------EEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC--ccCCcCccceEEEEEC---------------C-----------EEEEEE
Confidence 36799999999999999999999987652 22233221 1111110 1 248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||.... ...+..++..+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+.... ..+++.+
T Consensus 68 Dt~G~~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~ 142 (183)
T 1moz_A 68 DLGGQTSI----RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-SASEVSK 142 (183)
T ss_dssp EEC----C----CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-CHHHHHH
T ss_pred ECCCCHhH----HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-CHHHHHH
Confidence 99997432 23456788999999999999887665543 3445443 2568999999999997541 2222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+.. ........+++++||+++ .|++++.+.+.+.+.
T Consensus 143 ~~~~---~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 143 ELNL---VELKDRSWSIVASSAIKG---------------------------EGITEGLDWLIDVIK 179 (183)
T ss_dssp HTTT---TTCCSSCEEEEEEBGGGT---------------------------BTHHHHHHHHHHHHH
T ss_pred HhCc---ccccCCceEEEEccCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 2110 011123457999999987 688888888877654
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=148.11 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=102.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|+|++..+. ....||+.......... ++.. ..+.|||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~ 81 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEV-------------DGKQ---------VELALWDTA 81 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEE-------------TTEE---------EEEEEEECT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEE-------------CCEE---------EEEEEEECC
Confidence 579999999999999999999987754 23334443222111100 1110 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHH---
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISF--- 516 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~--- 516 (921)
|.... ...+..++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+.+...
T Consensus 82 G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 157 (207)
T 2fv8_A 82 GQEDY----DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157 (207)
T ss_dssp TCTTC----TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred CcHHH----HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccC
Confidence 97432 24466788999999999999876544443 355555543 78999999999997653222211110
Q ss_pred -----HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 -----VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 -----~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
....+...++ ..+++++||+++ .|++++.+.|.+.+..
T Consensus 158 ~v~~~~~~~~~~~~~--~~~~~~~SA~~g---------------------------~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 158 PVRTDDGRAMAVRIQ--AYDYLECSAKTK---------------------------EGVREVFETATRAALQ 200 (207)
T ss_dssp CCCHHHHHHHHHHTT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhcC--CCEEEEeeCCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 0011111111 238999999987 6899999888877653
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.7e-15 Score=152.86 Aligned_cols=162 Identities=11% Similarity=-0.048 Sum_probs=127.5
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCC----HHHHHHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCeEEcCCC---
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEAS----GKSVYEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASGVLLSDQ--- 167 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~GvHL~~~--- 167 (921)
.+.+.++.+.++|++++|+|.++.. -..-.+.++.++++|+ . .+.|++|| +++.+.++||||||+.+.
T Consensus 18 ~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~~~ 97 (230)
T 1tqj_A 18 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNA 97 (230)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECccccc
Confidence 7788999999999999999986321 0011268888999986 4 78899999 699999999999988777
Q ss_pred -CCCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEeCCC--C--CCC---CCcc-hhhhhhcC--
Q 002437 168 -GLPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVCCFG--E--GQK---ADVI-ENSLFTNV-- 234 (921)
Q Consensus 168 -~l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~gpv--T--k~~---~g~~-~~~~~~~~-- 234 (921)
+.+...+|.+.+ .+ . .+|+++ |+..+..++ ...++|||.+++| | +.. .+++ .+++++..
T Consensus 98 ~~~~~~~~~~i~~---~g-~---~~gv~~~p~t~~e~~~~-~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~ 169 (230)
T 1tqj_A 98 SPHLHRTLCQIRE---LG-K---KAGAVLNPSTPLDFLEY-VLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 169 (230)
T ss_dssp CTTHHHHHHHHHH---TT-C---EEEEEECTTCCGGGGTT-TGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH---cC-C---cEEEEEeCCCcHHHHHH-HHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHh
Confidence 666677777764 44 3 578888 788887777 6789999999998 2 222 1233 45666655
Q ss_pred ---CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 ---KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 ---~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||.+.|||+++|+.++.++||+++++.+|.++.
T Consensus 170 ~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a 207 (230)
T 1tqj_A 170 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNA 207 (230)
T ss_dssp HTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTS
T ss_pred cCCCCcEEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence 89999999999999999999999999999988764
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=144.27 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=101.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+|.|++..+.. ...+|.. .+....+.. ++.. ..+.||
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~i~ 83 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEI-------------QGKR---------VKLQIW 83 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEE-------------CCEE---------EEEEEE
Confidence 456899999999999999999999877532 2223321 111111100 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~ 515 (921)
||||.. +....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... -..+++.+
T Consensus 84 Dt~G~~----~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 159 (201)
T 2hup_A 84 DTAGQE----RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQS 159 (201)
T ss_dssp CCTTCG----GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCcH----hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHH
Confidence 999973 4456678889999999999999875443332 35555543 458999999999986421 11222222
Q ss_pred HHHHHHHHhhCCCCC-eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENV-TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~-~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... .. .. +++++||+++ .|++++.+.|.+.+.
T Consensus 160 ~~~-----~~---~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 160 LAE-----HY---DILCAIETSAKDS---------------------------SNVEEAFLRVATELI 192 (201)
T ss_dssp HHH-----HT---TCSEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHH-----Hc---CCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 12 34 8999999987 688888888877654
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=142.99 Aligned_cols=158 Identities=22% Similarity=0.268 Sum_probs=101.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+++.......... ++.. ..+.++||
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~Dt 73 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEI-------------DNQW---------AILDVLDT 73 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEe-------------CCcE---------EEEEEEEC
Confidence 4689999999999999999999987543 33444443222111110 1110 13678999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||... .......++..+|++++|+|++++.+.... .++..+ ...+.|+++|+||+|+..... ..++....
T Consensus 74 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~ 149 (183)
T 3kkq_A 74 AGQEE----FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149 (183)
T ss_dssp CSCGG----GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHH
T ss_pred CCchh----hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHH
Confidence 99743 334456778889999999999876433332 233333 235689999999999865311 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEeccc-chHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSAR-STLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~-~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .+ ..+++++||+ .+ .|++++.+.+.+.+.
T Consensus 150 ~~-----~~---~~~~~~~Sa~~~~---------------------------~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 150 AT-----KY---NIPYIETSAKDPP---------------------------LNVDKTFHDLVRVIR 181 (183)
T ss_dssp HH-----HH---TCCEEEEBCSSSC---------------------------BSHHHHHHHHHHHHH
T ss_pred HH-----Hh---CCeEEEeccCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 11 12 3679999998 65 688888888876654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-14 Score=142.11 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=100.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.++|+++|.+|+|||||+|+|.+..+.. ..||... +..... .++ ..+.++||
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~--~~~t~~~-~~~~~~-------------~~~-----------~~~~i~Dt 74 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT--LQPTWHP-TSEELA-------------IGN-----------IKFTTFDL 74 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCCSC-EEEEEE-------------ETT-----------EEEEEEEC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc--cccCCCC-CeEEEE-------------ECC-----------EEEEEEEC
Confidence 45799999999999999999999877532 2222221 111110 011 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||... ....+..++..+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+... ...+++.+.
T Consensus 75 ~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~- 148 (190)
T 1m2o_B 75 GGHIQ----ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSA- 148 (190)
T ss_dssp CCSGG----GTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHH-
T ss_pred CCCHH----HHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHH-
Confidence 99743 233466788999999999999987655443 3444432 256899999999999753 122222222
Q ss_pred HHHHHHh--------hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 518 KENTMKL--------LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 518 ~~~~~~~--------~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
+... ......+++++||+++ .|++++.+.+.+.
T Consensus 149 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 149 ---LGLLNTTGSQRIEGQRPVEVFMCSVVMR---------------------------NGYLEAFQWLSQY 189 (190)
T ss_dssp ---TTCSSCCC---CCSSCCEEEEECBTTTT---------------------------BSHHHHHHHHHTT
T ss_pred ---hCCccccccccccccceEEEEEeECCcC---------------------------CCHHHHHHHHHhh
Confidence 1111 0123468999999987 6888888877654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=147.89 Aligned_cols=167 Identities=17% Similarity=0.232 Sum_probs=104.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeE--EEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EIT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+..++|+|+|.+|+|||||+|+|++..+.+ ...+|+. .+. .+.+...... ...... ....+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~-------~~~~~~-------~~~~l~ 87 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPN-------GSSGKA-------FKVHLQ 87 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC--------------CCE-------EEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCcccc-------ccccCc-------eeEEEE
Confidence 456899999999999999999999987632 2222221 111 1111110000 000000 002489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEE 512 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~ 512 (921)
||||||. +.+...+..++..+|++|||+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++
T Consensus 88 l~Dt~G~----~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 163 (217)
T 2f7s_A 88 LWDTAGQ----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ 163 (217)
T ss_dssp EEEEESH----HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEECCCc----HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHH
Confidence 9999995 45566788899999999999999876544443 35555543 4679999999999864211 1122
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..... .. ...+++++||+++ .|++++.+.+.+.+.
T Consensus 164 ~~~~~-----~~---~~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 164 ARELA-----DK---YGIPYFETSAATG---------------------------QNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHH-----HH---TTCCEEEEBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHH-----HH---CCCcEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22211 11 2368999999987 688888887776654
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=155.87 Aligned_cols=182 Identities=20% Similarity=0.207 Sum_probs=114.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecC--CCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP--SPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p--~~~l~~l~ 438 (921)
...++|+++|.+|+|||||+|+|++...... +...+| ......... ............+.+. ......+.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETN----IGVCESCKK---PEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEE----EEECTTSCT---TTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccc----eeecccccc---ccceecccccccccccccccccceEE
Confidence 4578999999999999999999999654321 111111 111000000 0000000000000000 00013589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
||||||. +.+...+..++..+|++|+|+|++++. ..+..+++..+...+ +|+++|+||+|+... ++..+..+.
T Consensus 79 iiDtPGh----~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~-~~~~~~~~~ 153 (403)
T 3sjy_A 79 FIDAPGH----EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK-EEALSQYRQ 153 (403)
T ss_dssp EEECCCC----GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHHHHH
T ss_pred EEECCCc----HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch-HHHHHHHHH
Confidence 9999996 344556777889999999999999886 666666776666555 589999999999853 444445555
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+.+... .....+++++||+++ .|+++|.+.|.+.+..
T Consensus 154 i~~~l~~~-~~~~~~ii~vSA~~g---------------------------~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 154 IKQFTKGT-WAENVPIIPVSALHK---------------------------INIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHTTS-TTTTCCEEECBTTTT---------------------------BSHHHHHHHHHHHSCC
T ss_pred HHHHHHhh-CCCCCEEEEEECCCC---------------------------cChHHHHHHHHHhCCC
Confidence 55444332 234678999999987 6888999999887654
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=143.98 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=101.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+ .....||+.......... ++.. ..+.+|||
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 61 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITV-------------NGQE---------YHLQLVDT 61 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEE-------------CCEE---------EEEEEEeC
Confidence 357999999999999999999997664 344445554322111110 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
||.... ......++..+|++++|+|.+++.+..... ++..+ ...+.|+++|+||+|+..... ..++....
T Consensus 62 ~G~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 137 (181)
T 3t5g_A 62 AGQDEY----SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL 137 (181)
T ss_dssp CCCCTT----CCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred CCchhh----hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHH
Confidence 997533 234557788999999999998764444432 33333 334689999999999864311 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. .. ...+++++||+++ .|++++...+.+.+..
T Consensus 138 ~-----~~---~~~~~~~~Sa~~~---------------------------~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 138 A-----ES---WNAAFLESSAKEN---------------------------QTAVDVFRRIILEAEK 169 (181)
T ss_dssp H-----HH---TTCEEEECCTTSH---------------------------HHHHHHHHHHHHHHHT
T ss_pred H-----HH---hCCcEEEEecCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 1 11 2468999999987 5788888877776653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=143.81 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=98.0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|.+.++.. ..||... ...+.+ ++ ..+.++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~~t~~~~~~~~~~---------------~~-----------~~l~i~ 74 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ--HVPTLHPTSEELTI---------------AG-----------MTFTTF 74 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCSCEEEEE---------------TT-----------EEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCCCceeEEEEE---------------CC-----------EEEEEE
Confidence 356899999999999999999999876532 2222111 011111 11 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||.. .....+..+++.+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+... ...+++.+
T Consensus 75 Dt~G~~----~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~ 149 (198)
T 1f6b_A 75 DLGGHI----QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA-ISEERLRE 149 (198)
T ss_dssp EECC--------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-CCHHHHHH
T ss_pred ECCCcH----hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-CCHHHHHH
Confidence 999973 2334566788999999999999887554443 3444442 246899999999999752 12233322
Q ss_pred HHHHHHHH-------h--hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 516 FVKENTMK-------L--LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 516 ~~~~~~~~-------~--~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+...... + ......+++++||+++ .|++++.+.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g---------------------------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 150 MFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR---------------------------QGYGEGFRWMAQYI 197 (198)
T ss_dssp HHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTT---------------------------BSHHHHHHHHHTTC
T ss_pred HhCcccccccccccccccccCceEEEEEEECCCC---------------------------CCHHHHHHHHHHhc
Confidence 22110000 0 0013468999999987 68888888876543
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=146.70 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=98.6
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.+..++|+|+|.+|+|||||+|+|++..+........+..+....+.. ++.. ..+.||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~l~l~ 79 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-------------GGKT---------VKLQIW 79 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-------------CCee---------eEEEEE
Confidence 345789999999999999999999988764322221121221111110 1110 148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~ 515 (921)
||||. +.....+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.... ...++...
T Consensus 80 Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 155 (200)
T 2o52_A 80 DTAGQ----ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASR 155 (200)
T ss_dssp CCTTH----HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred cCCCc----HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHH
Confidence 99995 33344566788999999999999876543333 34444433 468999999999986321 11122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
... . ...+++++||+++ .|++++...+.+.+.
T Consensus 156 ~~~-----~---~~~~~~~~SA~~g---------------------------~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 156 FAQ-----E---NELMFLETSALTG---------------------------ENVEEAFLKCARTIL 187 (200)
T ss_dssp HHH-----H---TTCEEEEECTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHH-----H---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 1 2468999999987 678888877766554
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=147.33 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=107.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+ +....||+.......+.. ++.. ..+.||||
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 64 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAV-------------DGQI---------VNLGLWDT 64 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEEC-------------SSCE---------EEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 458999999999999999999998765 344455554322211110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChH---------H
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAF---------E 509 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~---------~ 509 (921)
||.... ...+..++..+|++|+|+|.+++.+..+. .++..+... +.|+++|+||+|+..... .
T Consensus 65 ~G~~~~----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~ 140 (212)
T 2j0v_A 65 AGQEDY----SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT 140 (212)
T ss_dssp CCCCCC----CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCC
T ss_pred CCcHHH----HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCC
Confidence 998432 23466788999999999999876554443 355666543 789999999999875422 1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 510 LEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 510 ~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.++... +...++ ..+++++||+++ .|++++.+.+.+.+...
T Consensus 141 ~~~~~~-----~~~~~~--~~~~~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 141 STQGEE-----LRKQIG--AAAYIECSSKTQ---------------------------QNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHH-----HHHHHT--CSEEEECCTTTC---------------------------TTHHHHHHHHHHHHHCC
T ss_pred HHHHHH-----HHHHcC--CceEEEccCCCC---------------------------CCHHHHHHHHHHHHhhh
Confidence 122211 111122 248999999987 68889888888777653
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-14 Score=142.23 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc------ceeEE-EEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT------NEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT------~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
..++|+|+|.+|+|||||+|.+.+.... ...+++ ..++. ..+.... ....++.. .
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~-------~~~~~~~~---------~ 74 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPE--GRKGEMVSLATEDERTLFFDFLPLD-------IGEVKGFK---------T 74 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCG--GGBCCCEEEECSSCEEEEEEECCSS-------CCCSSSCE---------E
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccceeeeecccc-------cccccCCc---------e
Confidence 4589999999999999999998875422 211111 01111 1111000 00001110 1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh---------cCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ---------WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~---------~~~~vivVlNK~D~~~~ 506 (921)
.+.+|||||... +...+..++..+|++|+|+|++++.+......+..+.. .+.|+++|+||+|+...
T Consensus 75 ~~~i~Dt~G~~~----~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 75 RFHLYTVPGQVF----YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp EEEEEECCSCCS----CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred EEEEEeCCChHH----HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 489999999743 33467778999999999999986544444433332221 46799999999999754
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCC-eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 507 AFELEEAISFVKENTMKLLNIENV-TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~~~~-~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+++.+. ...... +++++||+.+ .|++++.+.+.+.+.
T Consensus 151 -~~~~~~~~~--------~~~~~~~~~~~~Sa~~~---------------------------~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 151 -LPVEMVRAV--------VDPEGKFPVLEAVATEG---------------------------KGVFETLKEVSRLVL 191 (198)
T ss_dssp -CCHHHHHHH--------HCTTCCSCEEECBGGGT---------------------------BTHHHHHHHHHHHHH
T ss_pred -cCHHHHHHH--------HHhcCCceEEEEecCCC---------------------------cCHHHHHHHHHHHHH
Confidence 222222222 222345 8999999987 688888888877655
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-14 Score=145.37 Aligned_cols=158 Identities=18% Similarity=0.254 Sum_probs=75.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC--CCCCCCCCCccc-eeE--EEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK--RYLKDGVVPTTN-EIT--FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~--~~~~~~~~~tT~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
..++|+|+|.+|+|||||+|+|++. .+. ....+|+. .+. .+.+.... .. ..+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~------------~~----------~~~ 75 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL-KDYAMTSGVEVVVAPVTIPDTT------------VS----------VEL 75 (208)
T ss_dssp EEEEEEEC-----------------------------------CEEEECTTSS------------EE----------EEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc-CCCCCccceEEEEEEEEECCcc------------cE----------EEE
Confidence 3479999999999999999999987 432 33344443 111 11111100 01 148
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCC-ChH-
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQ-NAF- 508 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~-~~~- 508 (921)
.||||||. ......+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+.. ...
T Consensus 76 ~l~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v 151 (208)
T 2yc2_C 76 FLLDTAGS----DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV 151 (208)
T ss_dssp EEEETTTT----HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC
T ss_pred EEEECCCc----HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC
Confidence 99999997 34556788889999999999999876543333 45555544 4689999999999975 211
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecccc-hHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 509 ELEEAISFVKENTMKLLNIENVTIYPVSARS-TLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~-~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..++..+... . ...+++++||+. + .|++++.+.+.+.+.
T Consensus 152 ~~~~~~~~~~----~----~~~~~~~~Sa~~~~---------------------------~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 152 RLDMAQDWAT----T----NTLDFFDVSANPPG---------------------------KDADAPFLSIATTFY 191 (208)
T ss_dssp CHHHHHHHHH----H----TTCEEEECCC----------------------------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHH----H----cCCEEEEeccCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 1122222221 1 136899999998 7 577777777776554
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-13 Score=149.44 Aligned_cols=217 Identities=17% Similarity=0.120 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccHHH-HHHHHHHH-hcCCCCeEEEEEeCCCCCHHHHHHHHH------CCCCCCCCCC
Q 002437 324 KQLIETERSVLLEAIDVIKKASPLMEE-VSLLIDAV-SQIDEPFLLVIVGEYNSGKSSVINALL------GKRYLKDGVV 395 (921)
Q Consensus 324 ~~~~e~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~~~~~ 395 (921)
+.+...+++.+.+.+..++...+.... ...+...+ ......++|+|+|.+|+|||||+|.|. |.++......
T Consensus 37 ~~~~~g~~~~l~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 37 TAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp HHHHTTCTTHHHHHHHHHHCCSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHHcCCHHHHHHHHHHHhhcChhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 445556677888888988876655443 22333333 344577899999999999999999996 3443333333
Q ss_pred CccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHHHHHH
Q 002437 396 PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQQRLT 456 (921)
Q Consensus 396 ~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~~~~~ 456 (921)
|.+....-...++. ..........+.++...+.. ...+++||||||+... .
T Consensus 117 p~~~~~~g~~l~d~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-------~ 186 (355)
T 3p32_A 117 PSSTRTGGSILGDK---TRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS-------E 186 (355)
T ss_dssp -------------------CHHHHTCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH-------H
T ss_pred CCCCcccchhccch---hhHHhhccCCCeeEEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH-------H
Confidence 32221000000000 00000000111111111100 0136899999998532 2
Q ss_pred HHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhC---CCCCeEE
Q 002437 457 EEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLN---IENVTIY 533 (921)
Q Consensus 457 ~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~v~ 533 (921)
...+..+|++|+|+|+...... +.+.. .....|+++|+||+|+... .........+...+..+.. .+.++|+
T Consensus 187 ~~~~~~aD~vl~V~d~~~~~~~---~~l~~-~~~~~p~ivVlNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 261 (355)
T 3p32_A 187 VAVANMVDTFVLLTLARTGDQL---QGIKK-GVLELADIVVVNKADGEHH-KEARLAARELSAAIRLIYPREALWRPPVL 261 (355)
T ss_dssp HHHHTTCSEEEEEEESSTTCTT---TTCCT-TSGGGCSEEEEECCCGGGH-HHHHHHHHHHHHHHHHHSTTCCSCCCCEE
T ss_pred HHHHHhCCEEEEEECCCCCccH---HHHHH-hHhhcCCEEEEECCCCcCh-hHHHHHHHHHHHHHhhccccccCCCCceE
Confidence 2335889999999998754321 11110 1123599999999998632 3344444444444333211 2357899
Q ss_pred EecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 534 PVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 534 ~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
++||+++ .|+++|.+.|.+.+.
T Consensus 262 ~iSA~~g---------------------------~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 262 TMSAVEG---------------------------RGLAELWDTVERHRQ 283 (355)
T ss_dssp EEBGGGT---------------------------BSHHHHHHHHHHHHH
T ss_pred EEEcCCC---------------------------CCHHHHHHHHHHHHH
Confidence 9999987 799999999988765
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=161.85 Aligned_cols=166 Identities=22% Similarity=0.256 Sum_probs=110.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|++|+|||||+|+|+|......+ ..++|..+....+. .+| ..+.+||
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~-------------~~g-----------~~~~l~D 234 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF-------------IDG-----------RKYVFVD 234 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE-------------ETT-----------EEEEESS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEE-------------ECC-----------EEEEEEE
Confidence 5689999999999999999999998754333 33344332211111 011 2478999
Q ss_pred CCCCChhhhHH--------HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChH-HHHH
Q 002437 442 TPGTNVILQRQ--------QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAF-ELEE 512 (921)
Q Consensus 442 TPG~~~~~~~~--------~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~-~~~~ 512 (921)
|||+....... ...+..++..+|++++|+|+..+.+..+..+...+...+.|+++|+||||+..... ..++
T Consensus 235 t~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~ 314 (439)
T 1mky_A 235 TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDE 314 (439)
T ss_dssp CSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHH
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHH
Confidence 99983211100 01134567889999999999988888887777777788999999999999985432 1344
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+.+...+.. ....+++++||+++ .|++++.+.+.+.+.
T Consensus 315 ~~~~~~~~~~~---~~~~~~~~~SA~~g---------------------------~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 315 FTKLFREKLYF---IDYSPLIFTSADKG---------------------------WNIDRMIDAMNLAYA 354 (439)
T ss_dssp HHHHHHHHCGG---GTTSCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---CCCCcEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 44444433322 23578999999987 688888888876654
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-14 Score=142.01 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=102.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++..+. ....||+. .+....+.. .++.. ..+.++|
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~------------~~~~~---------~~~~~~D 62 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITL------------PGNLN---------VTLQIWD 62 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEE------------TTTEE---------EEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEe------------CCCCE---------EEEEEEE
Confidence 4689999999999999999999987653 22223332 111111110 01100 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-----cCCe-EEEEEeCCCCCCCh-HHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-----WKKK-VVFVLNKSDLYQNA-FELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-----~~~~-vivVlNK~D~~~~~-~~~~~v 513 (921)
|||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. ...| +++|+||+|+.... ...++.
T Consensus 63 t~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~ 138 (178)
T 2hxs_A 63 IGGQTIG----GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH 138 (178)
T ss_dssp CTTCCTT----CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH
T ss_pred CCCCccc----cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH
Confidence 9997432 34467788999999999999876544333 34444443 1444 89999999986421 111222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..... .. ..+++++||+++ .|++++.+.+.+.+.+
T Consensus 139 ~~~~~-----~~---~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 139 LRFCQ-----EN---GFSSHFVSAKTG---------------------------DSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHH-----HH---TCEEEEECTTTC---------------------------TTHHHHHHHHHHHHTT
T ss_pred HHHHH-----Hc---CCcEEEEeCCCC---------------------------CCHHHHHHHHHHHHHh
Confidence 22211 12 368999999987 6888888888877654
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-14 Score=141.54 Aligned_cols=144 Identities=16% Similarity=0.241 Sum_probs=90.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+........+..+....+.. ++.. ..+.||||
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 76 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-------------DGER---------IKIQLWDT 76 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999987664322221121221111110 1110 14899999
Q ss_pred CCCChhhhHHH-HHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 443 PGTNVILQRQQ-RLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~~~~-~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
||.. ... ..+..++..+|++|+|+|++++.+.... .++..+. ..+.|+++|+||+|+..... ..++...
T Consensus 77 ~G~~----~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 152 (189)
T 1z06_A 77 AGQE----RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK 152 (189)
T ss_dssp CCSH----HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred CCch----hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH
Confidence 9963 333 5677888999999999999875443332 2334333 34689999999999864211 1122211
Q ss_pred HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+... ...+++++||+.+
T Consensus 153 -----~~~~---~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 153 -----FADT---HSMPLFETSAKNP 169 (189)
T ss_dssp -----HHHH---TTCCEEECCSSSG
T ss_pred -----HHHH---cCCEEEEEeCCcC
Confidence 1111 2368999999886
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=138.45 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=99.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+.+ ..||+......... .++.. ..+.+|||
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt 61 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEML-------------VDGQT---------HLVLIREE 61 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEE-------------ETTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEE-------------ECCEE---------EEEEEEEC
Confidence 45899999999999999999999887653 34444322111110 01110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-H---HHHhhh---cCCeEEEEEeCCCCCCC---hHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-F---LRYTQQ---WKKKVVFVLNKSDLYQN---AFELEE 512 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~---l~~l~~---~~~~vivVlNK~D~~~~---~~~~~~ 512 (921)
||... ..+++.+|++|+|+|.+++.+..+.. + +..+.. .+.|+++|.||+|+... ....++
T Consensus 62 ~G~~~---------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~ 132 (178)
T 2iwr_A 62 AGAPD---------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 132 (178)
T ss_dssp SSSCC---------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH
T ss_pred CCCch---------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH
Confidence 99752 35677899999999999776555443 2 333332 36799999999998421 111222
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+... .. ...+++.+||+.+ .|++++.+.+.+.+.
T Consensus 133 ~~~~~~----~~---~~~~~~~~Sa~~~---------------------------~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 133 ARALXA----DM---KRCSYYETXATYG---------------------------LNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHH----HH---SSEEEEEEBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHHH----hh---cCCeEEEEecccc---------------------------CCHHHHHHHHHHHHH
Confidence 222211 11 1368999999987 688888887776654
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=141.19 Aligned_cols=157 Identities=21% Similarity=0.209 Sum_probs=102.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.. ...||+.......+.. ++.. ..+.+|||
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~Dt 83 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATI-------------DDEV---------VSMEILDT 83 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 56899999999999999999999887543 3334433221111100 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||... ......++..+|++++|+|++++.+..+. .++..+. ..+.|+++|+||+|+.... ...++....
T Consensus 84 ~G~~~-----~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 158 (196)
T 2atv_A 84 AGQED-----TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL 158 (196)
T ss_dssp CCCCC-----CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCCc-----ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 99864 34567788899999999999875443332 2333333 2468999999999986421 112222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCcccccc-chHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRIN-TFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~s-g~~~L~~~l~~~l~ 582 (921)
.. . . ..+++++||+.+ . |++++.+.+.+.+.
T Consensus 159 ~~----~-~---~~~~~~~Sa~~g---------------------------~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 159 AT----E-L---ACAFYECSACTG---------------------------EGNITEIFYELCREVR 190 (196)
T ss_dssp HH----H-H---TSEEEECCTTTC---------------------------TTCHHHHHHHHHHHHH
T ss_pred HH----H-h---CCeEEEECCCcC---------------------------CcCHHHHHHHHHHHHH
Confidence 21 1 1 368999999987 5 88888888876654
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=139.17 Aligned_cols=117 Identities=25% Similarity=0.305 Sum_probs=80.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||+.......+.. .... ..+.+|||
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~~~~----------~~~~i~Dt 62 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEI------------DTQR----------IELSLWDT 62 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC------------SSCE----------EEEEEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEE------------CCEE----------EEEEEEEC
Confidence 4689999999999999999999987653 33444443222111110 0111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~ 506 (921)
||... +......++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..+
T Consensus 63 ~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 63 SGSPY----YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp CCSGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred CCChh----hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcc
Confidence 99742 334456788999999999999876555443 34455544 36899999999999754
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=155.71 Aligned_cols=196 Identities=17% Similarity=0.114 Sum_probs=116.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC---CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK---DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~---~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+++|.+|+|||||+|+|++..... ......+ ..+....+..+..........+... ...+.|
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~-------~~d~~~~e~~~GiTi~~~~~~~~~~---~~~~~i 79 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYG-------DIDKAPEERARGITINTAHVEYETA---KRHYSH 79 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHH-------HHSCSHHHHHHTCCCSCEEEEEECS---SCEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchh-------hccCCHHHHHcCCCEEeeeeEeccC---CeEEEE
Confidence 56899999999999999999998731000 0000000 0000000000000000000000000 135899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|||||... +...+..++..+|++|+|+|++++...+..+++..+...+.| +++|+||+|+..+.+.++.+...+.
T Consensus 80 iDtpG~~~----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~ 155 (405)
T 2c78_A 80 VDCPGHAD----YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR 155 (405)
T ss_dssp EECCCSGG----GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred EECCChHH----HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHH
Confidence 99999853 345567788999999999999998888888888888878888 8999999999864333444444444
Q ss_pred HHHHHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+..+ +. ...+++++||+++.+....... ..+....|. .++..|.+.|.+++.
T Consensus 156 ~~l~~~-~~~~~~~~~i~~SA~~g~~v~~~~~~--------~~~~~~~~~-~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 156 DLLNQY-EFPGDEVPVIRGSALLALEQMHRNPK--------TRRGENEWV-DKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHT-TSCTTTSCEEECCHHHHHHHHHHCTT--------CCTTSCHHH-HHHHHHHHHHHHHSC
T ss_pred HHHHHh-cccccCCCEEEccHHHhhhhhccccc--------cccCCCccc-ccHHHHHHHHHhhcC
Confidence 444332 22 3478999999998542211000 000012343 457788888877665
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-14 Score=142.23 Aligned_cols=161 Identities=21% Similarity=0.143 Sum_probs=101.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|.|++..........++.......+. .++.. -.+.+||
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---------~~l~i~D 78 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM-------------VDKEE---------VTLVVYD 78 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEE-------------ETTEE---------EEEEEEC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEE-------------ECCEE---------EEEEEEe
Confidence 3568999999999999999999987543222111222221111110 01110 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
|||..... ..+...++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 79 t~g~~~~~---~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 155 (195)
T 3cbq_A 79 IWEQGDAG---GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH 155 (195)
T ss_dssp CCCCSGGG---HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred cCCCccch---hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH
Confidence 99985332 12556677899999999999876543333 34555543 3689999999999974311 1222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .... ..+++++||+.+ .|++++.+.+.+.+.
T Consensus 156 ~-----a~~~---~~~~~e~Sa~~~---------------------------~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 156 L-----AGTL---SCKHIETSAALH---------------------------HNTRELFEGAVRQIR 187 (195)
T ss_dssp H-----HHHT---TCEEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred H-----HHHh---CCEEEEEcCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 1112 368999999987 688888888877665
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=163.55 Aligned_cols=160 Identities=24% Similarity=0.242 Sum_probs=108.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|+|++.++.... ..++|..+....+...+ . ..+.|||
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~------------~-----------~~l~liD 89 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP------------I-----------GPVTLVD 89 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETT------------T-----------EEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC------------C-----------CeEEEEE
Confidence 5689999999999999999999998865433 33344333222211100 0 1489999
Q ss_pred CCCCChhh---hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 442 TPGTNVIL---QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 442 TPG~~~~~---~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|||+.... ......+..++..+|++|+|+|+ .....+..++..+.+.+.|+++|+||+|+...... ...
T Consensus 90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~------~~~ 161 (423)
T 3qq5_A 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE------ELK 161 (423)
T ss_dssp CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT------HHH
T ss_pred CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH------HHH
Confidence 99986432 12234467788999999999999 56778888999999889999999999999865322 111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+. ...+.+++++||+++ .|++++.+.|.+.+..
T Consensus 162 ~~l~---~~~g~~v~~vSAktg---------------------------~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 162 GLYE---SRYEAKVLLVSALQK---------------------------KGFDDIGKTISEILPG 196 (423)
T ss_dssp HHSS---CCTTCCCCCCSSCCT---------------------------TSTTTHHHHHHHHSCC
T ss_pred HHHH---HHcCCCEEEEECCCC---------------------------CCHHHHHHHHHHhhhh
Confidence 1222 223468999999987 6888888888888743
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=138.87 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=88.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+++|.+|+|||||+|.+.+..... .+..+++.... ..+. ++. ...+.+|
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~---------~~~l~i~ 74 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYK-DDIS--------------NSS---------FVNFQIW 74 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEE-EEEC--------------CTT---------SCCEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceee-eecc--------------CCC---------eeEEEEE
Confidence 56899999999999999999999853221 01111111111 1100 000 0258999
Q ss_pred eCCCCChhhhHHHHHH---HHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh-----cCCeEEEEEeCCCCCCChHHH--
Q 002437 441 DTPGTNVILQRQQRLT---EEFVPRADLVLFVISADRPLTESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQNAFEL-- 510 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~---~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~-----~~~~vivVlNK~D~~~~~~~~-- 510 (921)
||||.... .... ..++..+|++|+|+|++++.......+...+.. .+.|+++|+||+|+...+...
T Consensus 75 Dt~G~~~~----~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 150 (196)
T 3llu_A 75 DFPGQMDF----FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET 150 (196)
T ss_dssp ECCSSCCT----TCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH
T ss_pred ECCCCHHH----HhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHH
Confidence 99997432 1223 577788999999999998733333333333322 368999999999998543222
Q ss_pred -HHHHHHHHHHHHHhh-CCCCCeEEEecccc
Q 002437 511 -EEAISFVKENTMKLL-NIENVTIYPVSARS 539 (921)
Q Consensus 511 -~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~ 539 (921)
..+.......+.... .....+++.+||++
T Consensus 151 ~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 181 (196)
T 3llu_A 151 QRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEEECTTS
T ss_pred HhHHHHHHHHHHHHhhhhcCCcceEEEEech
Confidence 222222223333311 12357899999975
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=142.76 Aligned_cols=160 Identities=23% Similarity=0.359 Sum_probs=104.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|+|++..........+|.......+.. ++ ..+.+|||
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~~~l~Dt 61 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-------------NG-----------EKFKVVDL 61 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-------------TT-----------EEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-------------CC-----------cEEEEEEC
Confidence 3579999999999999999999997654333333333322221110 11 14899999
Q ss_pred CCCChhhh--HHHHHHHHhcC--CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQ--RQQRLTEEFVP--RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~--~~~~~~~~~l~--~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||...... ....+...++. .+|++++|+|..+. .....++..+...+.|+++|+||+|+.... .+.....
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~--- 135 (188)
T 2wjg_A 62 PGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSL-GIEIDVD--- 135 (188)
T ss_dssp CCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHT-TCCCCHH---
T ss_pred CCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccc-cchHHHH---
Confidence 99864321 22334555553 59999999998752 344456677777789999999999975221 0000111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+...+ ..+++++||+.+ .|++++.+.+.+.+.+
T Consensus 136 -~~~~~~---~~~~~~~Sa~~~---------------------------~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 136 -KLEKIL---GVKVVPLSAAKK---------------------------MGIEELKKAISIAVKD 169 (188)
T ss_dssp -HHHHHH---TSCEEECBGGGT---------------------------BSHHHHHHHHHHHHTT
T ss_pred -HHHHHh---CCCeEEEEecCC---------------------------CCHHHHHHHHHHHHHh
Confidence 111222 258999999886 6899999988887764
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.3e-13 Score=141.93 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=82.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++..+...+. .++|.....+.... .+ ..+.|||
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~l~iiD 93 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-------------AG-----------FTLNIID 93 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-------------CC-----------eEEEEEE
Confidence 46899999999999999999999988754433 33443332222111 11 2489999
Q ss_pred CCCCChhh---hHHHHHHHHhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhc-C----CeEEEEEeCCCCCCC
Q 002437 442 TPGTNVIL---QRQQRLTEEFV--PRADLVLFVISADR-PLTESEVVFLRYTQQW-K----KKVVFVLNKSDLYQN 506 (921)
Q Consensus 442 TPG~~~~~---~~~~~~~~~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~~-~----~~vivVlNK~D~~~~ 506 (921)
|||+.... ......+..++ ..+|++|||+|.+. .++..+..+++.+... + .|+++|+||+|+...
T Consensus 94 TpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 94 TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 99986432 22233344443 57999999988764 4666777788777543 2 599999999998754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=148.13 Aligned_cols=162 Identities=20% Similarity=0.211 Sum_probs=101.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+|+|.+|+|||||+|+|++..+........+..+....+.. ++.. ..+.|||
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~i~D 68 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-------------EGKR---------IKAQIWD 68 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-------------TTEE---------EEEEEEC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-------------CCEE---------EEEEEEE
Confidence 34689999999999999999999988764332221121221111110 1110 1489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||... +...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 69 t~G~~~----~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 144 (223)
T 3cpj_B 69 TAGQER----YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTF 144 (223)
T ss_dssp CTTTTT----TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHH
T ss_pred CCCccc----hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 999742 334567788999999999999876554443 34555543 3689999999999864211 11222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.. . ...+++++||+.+ .|++++.+.+.+.+...
T Consensus 145 ~~-----~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 145 AQ-----E---NQLLFTETSALNS---------------------------ENVDKAFEELINTIYQK 177 (223)
T ss_dssp HH-----H---TTCEEEECCCC-C---------------------------CCHHHHHHHHHHHHTTC
T ss_pred HH-----H---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHHHH
Confidence 11 1 2468999999886 68999998888777653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=155.39 Aligned_cols=171 Identities=19% Similarity=0.158 Sum_probs=99.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC----------ccceeEEEEccCCccchhhcccccCCCeEEeecCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP----------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP 432 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~----------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 432 (921)
..++|+++|.+|+|||||+|+|++.......... .+..+..-...+....+.++......+...+..+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 4689999999999999999999765322111100 00000000000000000111111100111111111
Q ss_pred cccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCC-------HHHHHHHHHhhhcCCe-EEEEEeCCCCC
Q 002437 433 ILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLT-------ESEVVFLRYTQQWKKK-VVFVLNKSDLY 504 (921)
Q Consensus 433 ~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t-------~~e~~~l~~l~~~~~~-vivVlNK~D~~ 504 (921)
..+.||||||. +++...+..++..+|++|+|+|++++.. .+..+.+..+...+.| +|+|+||+|+.
T Consensus 95 --~~~~iiDTPGh----~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 95 --KHFTILDAPGH----KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred --eEEEEEECCCh----HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 25899999997 4455667777889999999999998754 3555666666667777 99999999996
Q ss_pred CC---hHHHHHHHHHHHHHHHHhhCC---CCCeEEEecccchH
Q 002437 505 QN---AFELEEAISFVKENTMKLLNI---ENVTIYPVSARSTL 541 (921)
Q Consensus 505 ~~---~~~~~~v~~~~~~~~~~~~~~---~~~~v~~vSA~~~l 541 (921)
.. ++..+++.+.+...+..+ +. ...+++++||+++.
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~-g~~~~~~~~~i~iSA~~G~ 210 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKV-GFNPKKDIHFMPCSGLTGA 210 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHh-cccccCCeeEEEeeccCCc
Confidence 42 223444444444433332 32 24689999999983
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=143.19 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=105.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||+.......... .... ..+.||||
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~~~~----------~~l~i~Dt 82 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLET------------EEQR----------VELSLWDT 82 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--------------CE----------EEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEE------------CCEE----------EEEEEEEC
Confidence 4689999999999999999999987753 34445543221111110 0111 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH--HHHHHHhhhc--CCeEEEEEeCCCCCCChHHHHH------
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE--VVFLRYTQQW--KKKVVFVLNKSDLYQNAFELEE------ 512 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e--~~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~------ 512 (921)
||.. .+..++..++..+|++|+|+|++++.+..+ ..++..+... +.|+++|+||+|+..+......
T Consensus 83 ~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 158 (214)
T 3q3j_B 83 SGSP----YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQ 158 (214)
T ss_dssp CCSG----GGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTC
T ss_pred CCCH----hHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhccccc
Confidence 9974 334456778899999999999998766555 2456666554 6899999999999753111100
Q ss_pred --H-HHHHHHHHHHhhCCCCC-eEEEecccchHHhhcccccccccCcccccccCccccccc-hHHHHHHHHHhhcc
Q 002437 513 --A-ISFVKENTMKLLNIENV-TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINT-FDKLEKLLYSFLDG 583 (921)
Q Consensus 513 --v-~~~~~~~~~~~~~~~~~-~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg-~~~L~~~l~~~l~~ 583 (921)
+ .+... .+...+ .. +++.+||+++ .| ++++.+.+.+.+..
T Consensus 159 ~~v~~~~~~-~~~~~~---~~~~~~e~SA~~g---------------------------~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 159 APISYEQGC-AIAKQL---GAEIYLEGSAFTS---------------------------EKSIHSIFRTASMLCLN 203 (214)
T ss_dssp CCCCHHHHH-HHHHHH---TCSEEEECCTTTC---------------------------HHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHH-HHHHHc---CCCEEEEeccCCC---------------------------cccHHHHHHHHHHHHhc
Confidence 0 01111 111112 24 8999999987 56 88888877776553
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-15 Score=162.41 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=105.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+.|+|+|.+|+|||||+|+|++.+....+...+|..++...+... ++ ..++|+|||
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~------------~~-----------~~~~l~DtP 214 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD------------DG-----------RSFVMADLP 214 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS------------SS-----------CEEEEEEHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC------------CC-----------ceEEEecCC
Confidence 4579999999999999999999887544455556655443221110 00 248999999
Q ss_pred CCChhhhHH---HHHHHHhcCCCCEEEEEEeCCC---CCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHH
Q 002437 444 GTNVILQRQ---QRLTEEFVPRADLVLFVISADR---PLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 444 G~~~~~~~~---~~~~~~~l~~aD~il~V~da~~---~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|+....... .....+.+..+|++|+|+|+++ .....+.. ++..+.. ..+|+++|+||+|+....+..
T Consensus 215 G~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~- 293 (342)
T 1lnz_A 215 GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENL- 293 (342)
T ss_dssp HHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHH-
T ss_pred CCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHH-
Confidence 974221111 1123344567999999999986 33334433 4455544 368999999999997532211
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
+.+. +.+.. ..+++++||+++ .|+++|.+.|.+.+.+.
T Consensus 294 ---~~l~----~~l~~-~~~v~~iSA~tg---------------------------~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 294 ---EAFK----EKLTD-DYPVFPISAVTR---------------------------EGLRELLFEVANQLENT 331 (342)
T ss_dssp ---HHHH----HHCCS-CCCBCCCSSCCS---------------------------STTHHHHHHHHHHHTSC
T ss_pred ---HHHH----HHhhc-CCCEEEEECCCC---------------------------cCHHHHHHHHHHHHhhC
Confidence 2222 22221 267999999886 68999999998887653
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=153.07 Aligned_cols=174 Identities=18% Similarity=0.142 Sum_probs=115.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCC--------------CCccceeEEEEccCCccchhhcccccCCCeEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGV--------------VPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~--------------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 426 (921)
..++|+++|.+++|||||+|+|++..... ... ...|.......+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~------------------- 62 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS------------------- 62 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-------------------
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-------------------
Confidence 35789999999999999999998741000 000 0011111111110
Q ss_pred eecCCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCC
Q 002437 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQ 505 (921)
Q Consensus 427 ~~~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~ 505 (921)
.. ...+.||||||. .++...+..++..+|++|+|+|++++...+..+.+..+...+.| +++|+||+|+..
T Consensus 63 --~~---~~~~~iiDtpG~----~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 63 --TA---ARHYAHTDCPGH----ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp --CS---SCEEEEEECSSH----HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred --cC---CeEEEEEECCCh----HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 00 135899999996 34445677788999999999999998888888888777777888 789999999986
Q ss_pred ChHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccc-hHHHHHHHHHhhc
Q 002437 506 NAFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINT-FDKLEKLLYSFLD 582 (921)
Q Consensus 506 ~~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg-~~~L~~~l~~~l~ 582 (921)
+++.++.+.+.+.+.+... +. ...+++++||+.+.+.. ...|. .| +..|.+.|.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~i~~SA~~g~n~~-----------------~~~~~-~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 134 DSEMVELVELEIRELLTEF-GYKGEETPIIVGSALCALEQR-----------------DPELG-LKSVQKLLDAVDTYIP 194 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TSCTTTSCEEECCHHHHHTTC-----------------CTTTT-HHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHc-CCCcccCcEEEeehhhccccc-----------------CCCcc-CCcHHHHHHHHHHhCC
Confidence 4333444444444444433 32 24799999999885310 12343 35 8888888887665
Q ss_pred c
Q 002437 583 G 583 (921)
Q Consensus 583 ~ 583 (921)
.
T Consensus 195 ~ 195 (397)
T 1d2e_A 195 V 195 (397)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-14 Score=144.42 Aligned_cols=117 Identities=25% Similarity=0.305 Sum_probs=80.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||+.......+.. .... ..+.||||
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~~~~----------~~l~i~Dt 83 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEI------------DTQR----------IELSLWDT 83 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEES------------SSSE----------EEEEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEE------------CCEE----------EEEEEEeC
Confidence 4689999999999999999999997753 33444443222111110 0111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~ 506 (921)
||... +......++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...
T Consensus 84 ~G~~~----~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 84 SGSPY----YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp CCSGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred CCcHh----hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccc
Confidence 99742 334456788999999999999876554543 35555554 36899999999999754
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=147.40 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=96.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC-CCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK-DGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~-~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|.|++..... .....+|..+....... ++. ..+.+||
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-------------~~~----------~~l~i~D 58 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-------------LGN----------MTLNLWD 58 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-------------TTT----------EEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-------------CCc----------eEEEEEE
Confidence 35789999999999999999999874322 22333444333322110 011 1489999
Q ss_pred CCCCChhhhHH-HHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-H---HHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 442 TPGTNVILQRQ-QRLTEEFVPRADLVLFVISADRPLTESEVV-F---LRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 442 TPG~~~~~~~~-~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~---l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
|||.....+.. ...+..++..+|++|+|+|++++.+..+.. + +..+.. .+.|+++|+||+|+... +...+..
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~-~~r~~~~ 137 (307)
T 3r7w_A 59 CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL-DKREELF 137 (307)
T ss_dssp ECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH-HHHHHHH
T ss_pred CCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch-hhhhHHH
Confidence 99985432211 356777889999999999999887666653 2 333332 26899999999999853 2222222
Q ss_pred HHHHHH---HHHhhCCCCCeEEEecccc
Q 002437 515 SFVKEN---TMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 515 ~~~~~~---~~~~~~~~~~~v~~vSA~~ 539 (921)
...... +...++....+++++||+.
T Consensus 138 ~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 138 QIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 122222 2222333247999999976
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=152.69 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=102.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+.. ..||.. ........ .+ ..+.||||
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~pT~~-~~~~~~~~-------------~~-----------~~l~i~Dt 216 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVETVEY-------------KN-----------ISFTVWDV 216 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEE--EEEETT-EEEEEEEE-------------TT-----------EEEEEEEC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCC--cccccc-eEEEEEec-------------Cc-----------EEEEEEEC
Confidence 45799999999999999999999877532 123222 22111110 01 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HH-HHhhh---cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FL-RYTQQ---WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l-~~l~~---~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .+..++..++..+|++|+|+|++++.+..... ++ ..+.. .+.|+++|+||+|+.... ..+++...+
T Consensus 217 ~G~~----~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-~~~~i~~~~ 291 (329)
T 3o47_A 217 GGQD----KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKL 291 (329)
T ss_dssp C---------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHH
T ss_pred CCCH----hHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-CHHHHHHHh
Confidence 9963 34445777889999999999998776655442 33 33332 378999999999997542 223332222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. .........+++++||+++ .|++++.+.|.+.+.
T Consensus 292 ~---~~~~~~~~~~~~~vSAk~g---------------------------~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 292 G---LHSLRHRNWYIQATCATSG---------------------------DGLYEGLDWLSNQLR 326 (329)
T ss_dssp T---CTTCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHHT
T ss_pred c---hhhhhcCCCEEEEEECCCC---------------------------cCHHHHHHHHHHHHH
Confidence 1 1112224568999999987 689999988887765
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=139.13 Aligned_cols=119 Identities=21% Similarity=0.295 Sum_probs=81.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+....+ ..++|.......+.. ++ ..+.|||
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-------------~~-----------~~l~liD 90 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-------------GG-----------FTINIID 90 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-------------CC-----------eeEEEEE
Confidence 5789999999999999999999998864433 334444333322211 11 2489999
Q ss_pred CCCCChhh---hHHHHHHHHhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhc-----CCeEEEEEeCCCCCC
Q 002437 442 TPGTNVIL---QRQQRLTEEFV--PRADLVLFVISADR-PLTESEVVFLRYTQQW-----KKKVVFVLNKSDLYQ 505 (921)
Q Consensus 442 TPG~~~~~---~~~~~~~~~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~~-----~~~vivVlNK~D~~~ 505 (921)
|||+.+.. +...+.+..++ ..+|++|||++.+. .++..+..+++.+... ..|+++|+||+|+..
T Consensus 91 TpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 91 TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred CCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 99985432 23333344444 47899999988764 3566667777777653 249999999999863
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-15 Score=152.55 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=94.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+. ....+|+......... .++.. ..+.+|||
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~Dt 85 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVM-------------VDGKP---------VNLGLWDT 85 (204)
Confidence 4689999999999999999999987653 2333444321111110 01100 13679999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHH---
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAIS--- 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~--- 515 (921)
||.. +....+..++..+|++|+|+|++++.+..+. .++..+... +.|+++|+||+|+.......+...+
T Consensus 86 ~G~~----~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 3th5_A 86 AGQE----DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161 (204)
Confidence 9973 4456677788999999999999877655554 355555544 6899999999999754221111110
Q ss_pred --HHHHHHHHhhCCCCC-eEEEecccch
Q 002437 516 --FVKENTMKLLNIENV-TIYPVSARST 540 (921)
Q Consensus 516 --~~~~~~~~~~~~~~~-~v~~vSA~~~ 540 (921)
........+...... +++++||+++
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g 189 (204)
T 3th5_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQ 189 (204)
Confidence 001111111111223 7899999987
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-12 Score=142.37 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCccHHH-H----HHHHHHHh------c-CCCCeEEEEEeCCCCCHHHHHHHHHC---
Q 002437 322 REKQLIETERSVLLEAIDVIKKASPLMEE-V----SLLIDAVS------Q-IDEPFLLVIVGEYNSGKSSVINALLG--- 386 (921)
Q Consensus 322 ~~~~~~e~~~~~l~~~~~~l~~~~~~~~~-~----~~l~~~~~------~-~~~~~~I~vvG~~~aGKSTLiNaLlg--- 386 (921)
-.+.+++.+++.+.+++..+++..+.... . +.+..... + ....+.|+++|.+|||||||+|+|++
T Consensus 20 ~~~~~~~~~r~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 20 LYTGLIQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcccchhhcccccCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 34667778899999999999998776432 1 11211111 1 23478999999999999999999996
Q ss_pred ---CCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecC---------C----------CcccccEEEeCCC
Q 002437 387 ---KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP---------S----------PILKEMIIVDTPG 444 (921)
Q Consensus 387 ---~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p---------~----------~~l~~l~lvDTPG 444 (921)
.++...+..|++....-.-.++. .........+..++...| . ..-.+++|+||||
T Consensus 100 ~~~~~v~V~~~dp~~~~~~g~~l~d~---~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~G 176 (349)
T 2www_A 100 ERGHKLSVLAVDPSSCTSGGSLLGDK---TRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVG 176 (349)
T ss_dssp HTTCCEEEEECCC-------------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred hcCCeEEEEeecCCCCCcCcchhchH---HHHHHhcCCCCEEEEecCCccccccchHHHHHHHHhhccCCCCEEEEECCC
Confidence 23333333343321000000000 000000000000000000 0 0012589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
+... . ......+|++++|+|++.+..... +...+ ...|.++|+||+|+... .........+...+...
T Consensus 177 i~~~---~----~~l~~~~d~vl~V~d~~~~~~~~~--i~~~i--l~~~~ivVlNK~Dl~~~-~~~~~~~~~l~~~l~~~ 244 (349)
T 2www_A 177 VGQS---E----FAVADMVDMFVLLLPPAGGDELQG--IKRGI--IEMADLVAVTKSDGDLI-VPARRIQAEYVSALKLL 244 (349)
T ss_dssp C--C---H----HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGH-HHHHHHHHHHHHHHTTC
T ss_pred cchh---h----hhHHhhCCEEEEEEcCCcchhHHH--hHHHH--HhcCCEEEEeeecCCCc-hhHHHHHHHHHHHHHhc
Confidence 8521 1 223578999999999986532111 11112 34688999999998732 22222233333322211
Q ss_pred hC---CCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 525 LN---IENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 525 ~~---~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .+.++++++||+++ .|+++|.+.|.+.+.
T Consensus 245 ~~~a~~~~~~vi~iSA~~g---------------------------~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 245 RKRSQVWKPKVIRISARSG---------------------------EGISEMWDKMKDFQD 278 (349)
T ss_dssp C-----CCCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred CccccCCCceEEEEecCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11 12578999999987 799999999887653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=136.39 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=99.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE-EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT-FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||+|.|++..+.. ...||..... .+.+ ++.. ..+.+||
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~t~~~~~~~~~~---------------~~~~---------~~l~i~D 73 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEGGRFKKEIVV---------------DGQS---------YLLLIRD 73 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC-CCCTTCEEEEEEEEE---------------TTEE---------EEEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCCcceEEEEEEE---------------CCEE---------EEEEEEE
Confidence 46899999999999999999999876542 2334432111 1111 1111 1378899
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-HHHHHHhhh----cCCeEEEEEeCCCCCCCh---HHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE-VVFLRYTQQ----WKKKVVFVLNKSDLYQNA---FELEEA 513 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~~~l~~l~~----~~~~vivVlNK~D~~~~~---~~~~~v 513 (921)
|||..... ++..+|++++|+|.+++.+..+ ..++..+.. .+.|+++|.||+|+.... -..++.
T Consensus 74 t~G~~~~~---------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~ 144 (184)
T 3ihw_A 74 EGGPPELQ---------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA 144 (184)
T ss_dssp CSSSCCHH---------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHH
T ss_pred CCCChhhh---------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHH
Confidence 99974221 6678999999999998765555 346666654 357999999999984211 111222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+... . + ...+++.+||+++ .|++++...+.+.+.
T Consensus 145 ~~~~~----~-~--~~~~~~e~Sa~~~---------------------------~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 145 RKLST----D-L--KRCTYYETCATYG---------------------------LNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHHH----H-T--TTCEEEEEBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHHHH----H-c--CCCeEEEecCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22211 1 1 1368999999987 688888888776654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=138.31 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=99.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||+.......... ++.. ..+.||||
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~Dt 76 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETV-------------DHQP---------VHLRVMDT 76 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999987743 44555554322111100 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh------cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ------WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~------~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
||...... +..++..+|++++|+|.+++.+..+. .++..+.. .+.|+++|+||+|+..... ..++..
T Consensus 77 ~G~~~~~~-----~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 151 (187)
T 3c5c_A 77 ADLDTPRN-----CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGV 151 (187)
T ss_dssp CC---CCC-----THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHH
T ss_pred CCCCcchh-----HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHH
Confidence 99743221 24578899999999999976544443 34555543 4789999999999863211 112222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecc-cchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 515 SFVKENTMKLLNIENVTIYPVSA-RSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA-~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+... . + ..+++.+|| +.+ .|++++.+.+.+.+
T Consensus 152 ~~~~----~-~---~~~~~e~Sa~~~g---------------------------~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 152 ALAG----R-F---GCLFFEVSACLDF---------------------------EHVQHVFHEAVREA 184 (187)
T ss_dssp HHHH----H-H---TCEEEECCSSSCS---------------------------HHHHHHHHHHHHHH
T ss_pred HHHH----H-c---CCcEEEEeecCcc---------------------------ccHHHHHHHHHHHH
Confidence 2221 1 2 368999999 776 57777777776654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-13 Score=155.09 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=99.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC-C---------ccceeEEEEccCCccchhhcccccCCCeEEeecCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV-P---------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~-~---------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 431 (921)
...++|+++|.+|+|||||+|+|++......... + ....+......+.......+......+...+..+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 3578999999999999999999987521110000 0 0000000000000000111111111111111111
Q ss_pred CcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcC-CeEEEEEeCCCC
Q 002437 432 PILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWK-KKVVFVLNKSDL 503 (921)
Q Consensus 432 ~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~-~~vivVlNK~D~ 503 (921)
-..+.||||||.. ++...+..++..+|++|+|+|++++ ......+.+..+...+ +|+|+|+||+|+
T Consensus 110 --~~~~~iiDTPG~~----~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 110 --RANFTIVDAPGHR----DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp --SCEEEEECCCCCG----GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred --CceEEEEECCCcH----HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 1358999999983 4456677888999999999999986 3345556666666655 569999999999
Q ss_pred CCC-hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccch
Q 002437 504 YQN-AFELEEAISFVKENTMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 504 ~~~-~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~ 540 (921)
... ....+++.+.+...+..+ +. ...+++++||+.+
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~-g~~~~~~~~i~iSA~~g 222 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDI-GFFEDNINWVPISGFSG 222 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHH-TCCGGGEEEEECCSSSC
T ss_pred ccchHHHHHHHHHHHHHHHHHc-CCCcccceEEEEeeecC
Confidence 853 344555666665554433 22 2478999999987
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=149.98 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=107.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+|+|||||+|.+++..+. ....+|+.......... ++.. ..+.++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~l~D 209 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-------------DGKP---------VNLGLWD 209 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEEEEEE-------------CCEE---------EEEEEEe
Confidence 46799999999999999999999987653 34455554322211110 1110 1367999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhhc--CCeEEEEEeCCCCCCChHHHHHHHHH-
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQW--KKKVVFVLNKSDLYQNAFELEEAISF- 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~~--~~~vivVlNK~D~~~~~~~~~~v~~~- 516 (921)
|||... .......++..+|++++|+|++++.+..+. .++..+... +.|+++|+||+|+.......+.....
T Consensus 210 t~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 285 (332)
T 2wkq_A 210 TAGLED----YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285 (332)
T ss_dssp ECCCGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred CCCchh----hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccc
Confidence 999743 334566788999999999999876655554 345555543 78999999999997553222211110
Q ss_pred ----HHHHHHHhhCCCC-CeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 ----VKENTMKLLNIEN-VTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ----~~~~~~~~~~~~~-~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.......+..... .+++++||+++ .|++++.+.+.+.+.
T Consensus 286 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 286 LTPITYPQGLAMAKEIGAVKYLECSALTQ---------------------------RGLKTVFDEAIRAVL 329 (332)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCcEEEEecCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 0001111111112 48999999987 688888888876654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=159.24 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=101.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC----------CccceeEEEEccCCccchhhcccccCCCeEEeec
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVV----------PTTNEITFLRFSDLASEEQQRCERHPDGQYICYL 429 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~----------~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (921)
.....++|+++|.+|+|||||+|+|++......... .....+......+.......+......+...+..
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 345678999999999999999999998743221100 0000000000000000000111111111111111
Q ss_pred CCCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcC-CeEEEEEeCC
Q 002437 430 PSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWK-KKVVFVLNKS 501 (921)
Q Consensus 430 p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~-~~vivVlNK~ 501 (921)
+ -..+.||||||+. .+...+..++..+|++|+|+|++++ ...+..+.+..+...+ +|+|+|+||+
T Consensus 243 ~---~~~~~iiDTPG~e----~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKi 315 (611)
T 3izq_1 243 H---RANFTIVDAPGHR----DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 315 (611)
T ss_dssp S---SCEEEEEECCSSS----CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECT
T ss_pred C---CceEEEEECCCCc----ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecc
Confidence 1 1358999999973 4556677888999999999999864 2334455555555555 4699999999
Q ss_pred CCCCC-hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchH
Q 002437 502 DLYQN-AFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 502 D~~~~-~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l 541 (921)
|+... ....+++...+...+..+ +. ...+++++||+++.
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~-g~~~~~~~~i~vSA~tG~ 357 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDI-GFFEDNINWVPISGFSGE 357 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHH-TCCGGGCEEEECCTTTCT
T ss_pred cccchhHHHHHHHHHHHHHHHHhh-cccccCccEEeeecccCC
Confidence 99863 334555555555544433 32 24789999999884
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=153.66 Aligned_cols=129 Identities=18% Similarity=0.152 Sum_probs=84.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CC-------CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD--GV-------VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI 433 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~-------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 433 (921)
..++|+|+|.+|+|||||+|+|++...... +. ..++.. .......+..........+.+.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d--------~~~~e~~~GiTi~~~~~~~~~~--- 80 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSD--------WMELEKQRGISVTTSVMQFPYK--- 80 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHH--------HHHHHHHHCCSSSSSEEEEEET---
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecc--------cchhhhcCCeeEEEeEEEEEeC---
Confidence 468999999999999999999974321110 00 000000 0000000111111111111111
Q ss_pred ccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 434 LKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 434 l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
...++||||||+.... ..+..++..+|++|+|+|+.++.+.....++..+...+.|+++|+||+|+...
T Consensus 81 ~~~i~liDTPG~~df~----~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 81 DYLINLLDTPGHADFT----EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TEEEEEECCCCSTTCC----HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CEEEEEEECCCchhHH----HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 0258999999985443 34778889999999999999999999999999998889999999999999754
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-13 Score=148.67 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=103.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+++|||||+|+|+. ...|.......+.... ..+.||||||.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~------------------------~~i~iiDtPGh 70 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG------------------------RNMVFVDAHSY 70 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS------------------------SEEEEEECTTT
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC------------------------eEEEEEECCCh
Confidence 899999999999999999981 1122222222221110 24899999998
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EEEEe-CCCCCCChHHHHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VFVLN-KSDLYQNAFELEEAISFVKENTMK 523 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-ivVlN-K~D~~~~~~~~~~v~~~~~~~~~~ 523 (921)
... ...+...+..+|++|+|+| +.....+..+.+..+...+.|. ++|+| |+|+ +.+..+++.+.+.+.+..
T Consensus 71 ~~f----~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl--~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 71 PKT----LKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST--HMHAIDELKAKLKVITSG 143 (370)
T ss_dssp TTC----HHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS--CHHHHHHHHHHHHHHTTT
T ss_pred HHH----HHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC--CHHHHHHHHHHHHHHHHh
Confidence 533 3345566789999999999 7777777777777777777777 89999 9999 433344444444443332
Q ss_pred hhCCCCCeEEE--ecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 524 LLNIENVTIYP--VSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 524 ~~~~~~~~v~~--vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. +....++++ +||+.+ .| ..|+++|.+.|.+.+.
T Consensus 144 ~-~~~~~~ii~~~~SA~~~-----------------------~~-g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 144 T-VLQDWECISLNTNKSAK-----------------------NP-FEGVDELKARINEVAE 179 (370)
T ss_dssp S-TTTTCEEEECCCCTTSS-----------------------ST-TTTHHHHHHHHHHHHH
T ss_pred c-CCCceEEEecccccccC-----------------------cC-CCCHHHHHHHHHhhcc
Confidence 2 223579999 999883 02 2688888877766544
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=148.37 Aligned_cols=183 Identities=21% Similarity=0.229 Sum_probs=109.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCC-CCccceeEEEE--ccCCcc--chhhcccccCC-CeEEeecCCCc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYL--KDGV-VPTTNEITFLR--FSDLAS--EEQQRCERHPD-GQYICYLPSPI 433 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~-~~tT~~~~~~~--~~~~~~--~~~~~~~~~~~-g~~~~~~p~~~ 433 (921)
...++|+++|.+++|||||+|+|+|.... +... ...|....+.. +...+. .+.... ..+. +.. ...
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~-~~~~~g~~-----~~~ 81 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSP-VCPYCGHE-----TEF 81 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSS-BCTTTCCB-----CEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccc-cccccCcc-----ccc
Confidence 34579999999999999999999976421 1111 11232221111 000000 000000 0000 100 000
Q ss_pred ccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHH
Q 002437 434 LKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 434 l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~ 511 (921)
...+.||||||. +.+...+...+..+|++|+|+|++++. ..+..+.+..+...+ +|+++|+||+|+... +...
T Consensus 82 ~~~i~iiDtPGh----~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~-~~~~ 156 (410)
T 1kk1_A 82 VRRVSFIDAPGH----EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK-EKAL 156 (410)
T ss_dssp EEEEEEEECSSH----HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHH
T ss_pred ccEEEEEECCCh----HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH-HHHH
Confidence 135899999996 334445666678899999999999876 566666555555444 589999999999853 3333
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+..+.+.+.+... .....+++++||+++ .|++.|.+.|.+.+..
T Consensus 157 ~~~~~i~~~l~~~-~~~~~~~i~vSA~~g---------------------------~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 157 ENYRQIKEFIEGT-VAENAPIIPISALHG---------------------------ANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHTTS-TTTTCCEEECBTTTT---------------------------BSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhc-CcCCCeEEEeeCCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 3334444333321 124579999999987 6888898888876653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=140.75 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=86.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
...++|+|+|.+|+|||||+|+|++..+.+. ...|++.. .+ ....+.+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~----~~--------------------------~~~~~~l 59 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----DY--------------------------DGSGVTL 59 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET----TG--------------------------GGSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE----Ee--------------------------eCceEEE
Confidence 3578999999999999999999998775432 12222210 00 0025899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC-CCCC-HHHHHHHHHhh-------hcCCeEEEEEeCCCCCCChHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD-RPLT-ESEVVFLRYTQ-------QWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~-~~~t-~~e~~~l~~l~-------~~~~~vivVlNK~D~~~~~~~~ 510 (921)
+||||+.................+|++|||+|++ ++.+ .....++..+. ..+.|+++|+||+|+... ...
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~ 138 (218)
T 1nrj_B 60 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPP 138 (218)
T ss_dssp EECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCH
T ss_pred EECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc-CCH
Confidence 9999986443333333333334499999999998 4333 22223343332 247899999999999865 333
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecccchHH
Q 002437 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLE 542 (921)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~ 542 (921)
.++.+.+...+..+......+++.+||+.+.+
T Consensus 139 ~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 139 SKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 44444444444333222235688899988754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-15 Score=153.90 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=94.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|++..+.......++.......+.. ++.. ..+.||||
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt 89 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-------------DGKT---------IKLQIWDT 89 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-------------TTEE---------EEEEEECC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 4589999999999999999999987754322222222222111110 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
||.... ...+..++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .++...
T Consensus 90 ~G~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~-- 163 (199)
T 3l0i_B 90 AGQERF----RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE-- 163 (199)
T ss_dssp TTCTTC----CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CH--
T ss_pred CCcHhH----HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHH--
Confidence 996422 23455678999999999999987554443 35555543 36899999999998643110 011111
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+... ...+++++||+++ .|++++.+.|.+.+.
T Consensus 164 ---~~~~---~~~~~~~vSA~~g---------------------------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 164 ---FADS---LGIPFLETSAKNA---------------------------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp ---HHHT---TTCCBCCCCC------------------------------HHHHHHHHHHTTTTT
T ss_pred ---HHHH---cCCeEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1111 2467999999887 678888888776655
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=149.79 Aligned_cols=171 Identities=19% Similarity=0.139 Sum_probs=100.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCC-----------CCCccceeEEEEc-cCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDG-----------VVPTTNEITFLRF-SDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~-----------~~~tT~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
..++|+++|.+++|||||+|+|++....... ..++|.....+.+ .+....+..+......+...+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4579999999999999999999876421111 1112211000000 000000001111111111111111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCC-eEEEEEeCCCCCCC-hH
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKK-KVVFVLNKSDLYQN-AF 508 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~-~vivVlNK~D~~~~-~~ 508 (921)
...+.||||||... +...+..++..+|++|+|+|++++...+..+++..+...+. |+++|+||+|+... ++
T Consensus 103 ---~~~~~iiDtpGh~~----f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 103 ---KRKFIIADTPGHEQ----YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp ---SEEEEEEECCCSGG----GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH
T ss_pred ---CceEEEEECCChHH----HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHH
Confidence 12589999999743 33446667899999999999999888777777776666664 69999999999863 33
Q ss_pred HHHHHHHHHHHHHHHhhC--CCCCeEEEecccchH
Q 002437 509 ELEEAISFVKENTMKLLN--IENVTIYPVSARSTL 541 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~--~~~~~v~~vSA~~~l 541 (921)
.++++.+.+.+.+..+ + ....+++++||+++.
T Consensus 176 ~~~~i~~~~~~~~~~~-g~~~~~~~~i~vSA~~g~ 209 (434)
T 1zun_B 176 VFESIKADYLKFAEGI-AFKPTTMAFVPMSALKGD 209 (434)
T ss_dssp HHHHHHHHHHHHHHTT-TCCCSEEEEEECCTTTCT
T ss_pred HHHHHHHHHHHHHHHh-CCCccCceEEEEeccCCC
Confidence 3444555554444332 3 234789999999873
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-13 Score=142.16 Aligned_cols=162 Identities=12% Similarity=0.005 Sum_probs=121.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH----HHHHHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCeE--EcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG----KSVYEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASGV--LLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~----~~~~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~Gv--HL~~~~ 168 (921)
++.+.++.+.++|++++|+|.++.+- ..-.+.++.+++.|. . .+.|++|| +++.+.++|+||| |..+.+
T Consensus 20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~~~~ 99 (228)
T 1h1y_A 20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSR 99 (228)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGCT
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 77889999999999999999654320 011367888888885 3 78899999 5899999999999 888888
Q ss_pred CC-HHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccC---CCCEEEeCCC----CCCCC---Ccc-hhhhhhcC
Q 002437 169 LP-AIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSE---GADFLVCCFG----EGQKA---DVI-ENSLFTNV 234 (921)
Q Consensus 169 l~-~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~---gaDyv~~gpv----Tk~~~---g~~-~~~~~~~~ 234 (921)
.+ ...+|.+.+ .+ . .+|.++ |+..+..++ ... ++||+.++++ ++... ++. .+++++..
T Consensus 100 ~~~~~~~~~i~~---~g-~---~igv~~~p~t~~e~~~~-~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~ 171 (228)
T 1h1y_A 100 DNWQELIQSIKA---KG-M---RPGVSLRPGTPVEEVFP-LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY 171 (228)
T ss_dssp TTHHHHHHHHHH---TT-C---EEEEEECTTSCGGGGHH-HHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC
T ss_pred cHHHHHHHHHHH---cC-C---CEEEEEeCCCCHHHHHH-HHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc
Confidence 77 666666653 33 2 466777 665554444 334 8999999988 22221 222 36666666
Q ss_pred -CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 -KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 -~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||++.|||+++|+.++.++|++++++.++.++.
T Consensus 172 ~~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~ 207 (228)
T 1h1y_A 172 PSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGA 207 (228)
T ss_dssp TTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred CCCCEEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence 89999999999999999999999999999888764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=138.84 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=100.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||++.++...+. ....||.. .+...... ..+..+ .+.||||
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~------------~~~~~v----------~l~iwDt 69 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMY------------LEDRTI----------RLQLWDT 69 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEE------------CSSCEE----------EEEEECC
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEE------------ecceEE----------EEEEEEC
Confidence 489999999999999999999977653 34444432 11111110 011111 4789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCCh-HHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNA-FELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~-~~~~~v~~~~ 517 (921)
+|.. ++..++..|++.+|++++|+|.+++.+..+.. ++..+. ....|+++|.||+|+.... -..++..+..
T Consensus 70 aGqe----~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a 145 (216)
T 4dkx_A 70 AGLE----RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 145 (216)
T ss_dssp SCTT----TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCch----hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH
Confidence 9974 44456788999999999999999766555443 444443 3457999999999986421 1122322222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+ .+ +.+++.+||+++ .|++++...|.+.+.
T Consensus 146 ~-----~~---~~~~~e~SAktg---------------------------~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 146 K-----EL---NVMFIETSAKAG---------------------------YNVKQLFRRVAAALP 175 (216)
T ss_dssp H-----HH---TCEEEEEBTTTT---------------------------BSHHHHHHHHHHHC-
T ss_pred H-----Hh---CCeeEEEeCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 2 12 367999999997 688888888776654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=146.35 Aligned_cols=183 Identities=22% Similarity=0.256 Sum_probs=102.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCC-CCccceeEEEEccCCc--cchhhccc-ccCC-CeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGV-VPTTNEITFLRFSDLA--SEEQQRCE-RHPD-GQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~-~~tT~~~~~~~~~~~~--~~~~~~~~-~~~~-g~~~~~~p~~~l~ 435 (921)
..++|+++|.+++|||||+|+|+|..... ... ...|....+....... ........ ..+. |.. .....
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~-----~~~~~ 81 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAE-----TEFLR 81 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCB-----CEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcc-----ccccc
Confidence 56899999999999999999999764221 111 1123222111000000 00000000 0000 100 00013
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v 513 (921)
.+.||||||. +.+...+...+..+|++|+|+|++++. ..+..+.+..+...+ +|+++|+||+|+.... ...+.
T Consensus 82 ~i~iiDtPGh----~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~-~~~~~ 156 (408)
T 1s0u_A 82 RVSFVDSPGH----ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK-QAEEN 156 (408)
T ss_dssp EEEEEECSSH----HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT-TTTTH
T ss_pred EEEEEECCCH----HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH-HHHHH
Confidence 5899999995 344445566678889999999999876 566666665555544 5899999999998642 21122
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.+.+.+... .....+++++||+++ .|+++|.+.|.+.+..
T Consensus 157 ~~~i~~~l~~~-~~~~~~~i~vSA~~g---------------------------~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 157 YEQIKEFVKGT-IAENAPIIPISAHHE---------------------------ANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHTTS-TTTTCCEEEC---------------------------------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhc-CCCCCeEEEeeCCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 22333333221 224578999999987 6888888888876653
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=133.88 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=97.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|.+++.... .....+++......... .+|.. ..+.++|
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~-------------~~~~~---------~~l~~~D 93 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM-------------VDGES---------ATIILLD 93 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEE-------------ETTEE---------EEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEE-------------ECCee---------eEEEEee
Confidence 4589999999999999999999986432 22222222221111000 01111 1368999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
|+|.... ...+...+...+|++|+|+|.++..+..... ++..+.. .+.|+++|.||+|+..... ..++...
T Consensus 94 t~g~~~~---~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~ 170 (211)
T 2g3y_A 94 MWENKGE---NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA 170 (211)
T ss_dssp CTTTTHH---HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred cCCCcch---hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH
Confidence 9997531 2335566778899999999998755444432 4444432 3689999999999863210 1111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.... ..+++++||+++ .|++++.+.+.+.+.
T Consensus 171 -----~a~~~---~~~~~e~SAk~g---------------------------~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 171 -----CAVVF---DCKFIETSAAVQ---------------------------HNVKELFEGIVRQVR 202 (211)
T ss_dssp -----HHHHH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHHHc---CCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 11112 368999999987 688888887766543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-13 Score=133.18 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=95.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC-CCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR-YLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~-~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|.|.+.. .......||+. .....+.... ...++. ...+.++||
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g-~~~~~~~~~~--------~~~~~~---------~~~~~i~Dt 63 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVG-IDVKDWPIQI--------RDKRKR---------DLVLNVWDF 63 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CS-EEEEEEEC--------------------------CEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceecc-EEeEEeeecc--------ccCCCC---------ceEEEEEec
Confidence 3789999999999999999999863 22222333332 2211111000 000000 014789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||.. +...+...++..+|++++|+|.+++. +.... .++..+.. .+.|+++|.||+|+... ...........
T Consensus 64 ~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~ 138 (184)
T 2zej_A 64 AGRE----EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE-KQRKACMSKIT 138 (184)
T ss_dssp CSHH----HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH-HHHHHHHHHHH
T ss_pred CCCH----HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc-hhhHHHHHHHH
Confidence 9963 33445566778899999999998753 22222 34555443 36899999999999743 22222222222
Q ss_pred HHHHHhhCCCCCe----EEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVT----IYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~----v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
..+... ...+ ++++||+++ ..+|..|.+.+.+.+..
T Consensus 139 ~~~~~~---~~~~~~~~~~~~Sa~~~--------------------------~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 139 KELLNK---RGFPAIRDYHFVNATEE--------------------------SDALAKLRKTIINESLN 178 (184)
T ss_dssp HHTTTC---TTSCEEEEEEECCTTSC--------------------------CHHHHHHHHHHHHHHHC
T ss_pred HHHHHh---cCCcchhheEEEecccC--------------------------chhHHHHHHHHHHHHhc
Confidence 222221 2233 899999886 13788888888776653
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-14 Score=169.55 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=110.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..+++|+++|.+|+|||||+|+|++.++.......+|..+....... +.+ ..++|||
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~------------~~g-----------~~i~~iD 58 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL------------PSG-----------EKITFLD 58 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS------------SCS-----------SCCBCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe------------CCC-----------CEEEEEE
Confidence 45789999999999999999999987654433333343322211110 011 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
|||.... ...+..++..+|++|+|+|++++.+.+..+.+..+...+.|+++|+||+|+..... +.+...+...
T Consensus 59 TPGhe~f----~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~--~~v~~~l~~~- 131 (537)
T 3izy_P 59 TPGHAAF----SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADP--EKVKKELLAY- 131 (537)
T ss_dssp CSSSCCT----TTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSC--CSSSSHHHHT-
T ss_pred CCChHHH----HHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccch--HHHHHHHHhh-
Confidence 9997433 23455677899999999999999999999999988888999999999999874311 1111111110
Q ss_pred HHhhCC--CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 522 MKLLNI--ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 522 ~~~~~~--~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...... ...+++++||+++ .|+++|.+.+...+
T Consensus 132 ~~~~e~~~~~~~iv~vSAktG---------------------------~GI~eLle~I~~l~ 166 (537)
T 3izy_P 132 DVVCEDYGGDVQAVHVSALTG---------------------------ENMMALAEATIALA 166 (537)
T ss_dssp TSCCCCSSSSEEECCCCSSSS---------------------------CSSHHHHHHHHHHH
T ss_pred hhhHHhcCCCceEEEEECCCC---------------------------CCchhHHHHHHHhh
Confidence 000000 2468999999987 57777777776654
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-13 Score=158.86 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce--eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE--ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
++++|+++|++++|||||+|+|++..+........|.. .....+.... .... ....+. ...+ ....+.||
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~---~~~~-~~~~~~-~v~~---~~~~i~li 75 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIE---GICG-DFLKKF-SIRE---TLPGLFFI 75 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHH---HHSC-GGGGGC-GGGG---TCCEEEEE
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhh---hhcc-cccccc-cccc---ccCCEEEE
Confidence 46899999999999999999999865432211112211 1222111000 0000 000000 0000 00148999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~ 505 (921)
||||..+.. .....++..+|++|+|+|++++...+..+.+..+...+.|+++|+||+|+..
T Consensus 76 DTPGhe~F~----~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 76 DTPGHEAFT----TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCCTTSCCT----TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred ECCCcHHHH----HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 999985442 2234567889999999999998888888888888888999999999999964
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=142.44 Aligned_cols=157 Identities=23% Similarity=0.304 Sum_probs=99.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCc---cceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPT---TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~t---T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|.++...... ...++ |.....+.... +. ..+.+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~--------------~~----------~~~~i 68 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNR--------------GP----------IKFNV 68 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTC-EEETTTTEEEEEEEEEETT--------------EE----------EEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECC--------------EE----------EEEEE
Confidence 46899999999999999999955433211 11122 21111111111 01 14899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|||||.. .+......++..+|++|+|+|++++.+..+. .++..+.. .+.|+++|+||+|+...... .+....
T Consensus 69 ~Dt~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~ 143 (221)
T 3gj0_A 69 WDTAGQE----KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-AKSIVF 143 (221)
T ss_dssp EEECSGG----GTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSC-GGGCCH
T ss_pred EeCCChH----HHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccccc-HHHHHH
Confidence 9999963 2334466778899999999999976544433 34444544 26799999999999754211 111111
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.. . ...+++++||+++ .|++++...+.+.+...
T Consensus 144 ~~-----~---~~~~~~~~Sa~~~---------------------------~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 144 HR-----K---KNLQYYDISAKSN---------------------------YNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HH-----H---HTCEEEECBGGGT---------------------------BTTTHHHHHHHHHHHTC
T ss_pred HH-----H---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHHhC
Confidence 11 1 2468999999987 68888888887776543
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=157.55 Aligned_cols=167 Identities=18% Similarity=0.131 Sum_probs=100.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
...++|+++|.+++|||||+|+|++.... .+... ......+ +....+.++........+..... ...+.|||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~-~G~a~-f~~~a~l---D~~~~ErerGITIdva~v~f~~~---~~kI~IID 365 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAK-TYGGA-ARAFDQI---DNAPEEKARGITINTSHVEYDTP---TRHYAHVD 365 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHH-HSCC-------------------------CCSCEEEECS---SCEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhcc-ccccc-ccccccc---ccccccccCceeEEEEEEEEcCC---CEEEEEEE
Confidence 34589999999999999999999864100 00000 0000000 00000000000000011111000 13589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||. .++...+..++..+|++|+|+|++++...+..+++..+...+.| +|+|+||+|+..+++.++.+.+.+.+.
T Consensus 366 TPGH----edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 366 CPGH----ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp CCCH----HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred CCCh----HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 9996 34455677788999999999999988777777777777777888 899999999986543344444444444
Q ss_pred HHHhhCC--CCCeEEEecccchH
Q 002437 521 TMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 521 ~~~~~~~--~~~~v~~vSA~~~l 541 (921)
+... +. ...+++++||+++.
T Consensus 442 Lk~~-G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 442 LSQY-DFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp HHHT-TSCTTTCCEEECCSTTTT
T ss_pred HHhc-cccccceeEEEEEeccCC
Confidence 4332 22 35789999999883
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-11 Score=134.94 Aligned_cols=218 Identities=18% Similarity=0.168 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCccHHH-HHHHHHHH-hcCCCCeEEEEEeCCCCCHHHHHHHHHC------CCCCCCC
Q 002437 322 REKQLIETERSVLLEAIDVIKKASPLMEE-VSLLIDAV-SQIDEPFLLVIVGEYNSGKSSVINALLG------KRYLKDG 393 (921)
Q Consensus 322 ~~~~~~e~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~I~vvG~~~aGKSTLiNaLlg------~~~~~~~ 393 (921)
-.+..++.+++.+.+.+..++........ ...+.... ........|+++|.+|+|||||+|.|.+ .++...+
T Consensus 12 ~~~~~~~~~r~~l~~~i~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 12 SIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHcCCHHHHHhhhhHhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45667788899999999998876544332 22333332 3456778999999999999999999963 3433333
Q ss_pred CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC------------------c-ccccEEEeCCCCChhhhHHHH
Q 002437 394 VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP------------------I-LKEMIIVDTPGTNVILQRQQR 454 (921)
Q Consensus 394 ~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~------------------~-l~~l~lvDTPG~~~~~~~~~~ 454 (921)
..|.+....-..+++... .......+.+ +++..+.. . ..+++||||||+.....
T Consensus 92 ~d~~~~~~~~~il~d~~~--~~~~~~~~~~-~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---- 164 (341)
T 2p67_A 92 VDPSSPVTGGSILGDKTR--MNDLARAEAA-FIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET---- 164 (341)
T ss_dssp ECCC-----------------CTTTTCTTE-EEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----
T ss_pred ecCCcCCCCcceecccch--HHhhccCCCc-eeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH----
Confidence 333221100000000000 0000000111 11111100 0 13699999999863221
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCC----CCC
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI----ENV 530 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~----~~~ 530 (921)
.....+|++|+|+|++.+.. .+.+.. ...+.|+++|+||+|+... .+.....+.++..+.. +.. +.+
T Consensus 165 ---~~~~~aD~vl~Vvd~~~~~~---~~~l~~-~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~l~~~l~~-~~~~~~~~~~ 235 (341)
T 2p67_A 165 ---EVARMVDCFISLQIAGGGDD---LQGIKK-GLMEVADLIVINKDDGDNH-TNVAIARHMYESALHI-LRRKYDEWQP 235 (341)
T ss_dssp ---HHHTTCSEEEEEECC---------CCCCH-HHHHHCSEEEECCCCTTCH-HHHHHHHHHHHHHHHH-SCCSBTTBCC
T ss_pred ---HHHHhCCEEEEEEeCCccHH---HHHHHH-hhhcccCEEEEECCCCCCh-HHHHHHHHHHHHHHHh-ccccccCCCC
Confidence 13589999999999875421 111110 1124688999999999743 2333333344433322 121 246
Q ss_pred eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 531 TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 531 ~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+++++||+++ .|++.|.+.|.+.+.
T Consensus 236 ~vi~iSA~~g---------------------------~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 236 RVLTCSALEK---------------------------RGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEEECBGGGT---------------------------BSHHHHHHHHHHHHH
T ss_pred cEEEeeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 8999999987 799999998887653
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-13 Score=152.19 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=72.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCH-------HHHHHHHHhhhcCCe-EEEEEeCCCCCC-C
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE-------SEVVFLRYTQQWKKK-VVFVLNKSDLYQ-N 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~-------~e~~~l~~l~~~~~~-vivVlNK~D~~~-~ 506 (921)
.+.||||||.. .+...+..++..+|++|+|+|++++..+ +..+.+..+...+.| +|+|+||+|+.. +
T Consensus 86 ~~~iiDtPGh~----~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 86 QVTVIDAPGHR----DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEECCCCT----THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTC
T ss_pred eEEEEECCCcH----HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCC
Confidence 58999999974 4555677888999999999999865332 444455555556654 999999999984 3
Q ss_pred hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchHH
Q 002437 507 AFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTLE 542 (921)
Q Consensus 507 ~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l~ 542 (921)
++.++.+.+.+...+..+ +. ...+++++||+.+.+
T Consensus 162 ~~~~~~i~~~~~~~l~~~-g~~~~~~~~i~vSA~~g~n 198 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKV-GYNPKTVPFVPISGWNGDN 198 (458)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCGGGCCEEECCTTTCBT
T ss_pred HHHHHHHHHHHHHHHHHc-CCCccCceEEEeecccCcC
Confidence 444555666665554443 32 247899999998743
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=151.42 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=106.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCC-C-CCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC--CcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRY-L-KDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--PILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~-~-~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~l~~l~ 438 (921)
..++|+++|+.++|||||+|+|+...- . ..+...+. .+....+.++..........+.+.. .....++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~--------~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~in 76 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQL--------LDTLDVERERGITVKMQAVRMFYKAKDGNTYKLH 76 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-------------------------------CCCCSEEEEEECTTSCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccc--------cccchhhhcccceeeeeEEEEEEEcCCCCeEEEE
Confidence 457899999999999999999986311 1 00000000 0000000111111111111111110 0002488
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||..+.. ..+..++..+|++|+|+|++++.+.+....+..+...+.|+++|+||+|+.... .+++.+.
T Consensus 77 liDTPGh~dF~----~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~--~~~v~~e-- 148 (600)
T 2ywe_A 77 LIDTPGHVDFS----YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD--VDRVKKQ-- 148 (600)
T ss_dssp EECCCCSGGGH----HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC--HHHHHHH--
T ss_pred EEECCCcHhHH----HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC--HHHHHHH--
Confidence 99999985443 345667789999999999999988888887777777889999999999997542 2333333
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+.++....+++++||+++ .|+++|.+.+.+.+..
T Consensus 149 --l~~~lg~~~~~vi~vSAktg---------------------------~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 149 --IEEVLGLDPEEAILASAKEG---------------------------IGIEEILEAIVNRIPP 184 (600)
T ss_dssp --HHHTSCCCGGGCEECBTTTT---------------------------BSHHHHHHHHHHHSCC
T ss_pred --HHHhhCCCcccEEEEEeecC---------------------------CCchHHHHHHHHhccc
Confidence 33344544446999999987 5788888877776654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=126.75 Aligned_cols=166 Identities=21% Similarity=0.348 Sum_probs=102.7
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
.....+|+++|++|+|||||+|+|+|.... .....+ +|.....+.+. .++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~---------------------------~~~~ 75 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA---------------------------DGKR 75 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE---------------------------TTEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec---------------------------CCEE
Confidence 346789999999999999999999997631 111111 11111111100 1478
Q ss_pred EEeCCCCChhh------hHHHHHHHHhc---CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHH
Q 002437 439 IVDTPGTNVIL------QRQQRLTEEFV---PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFE 509 (921)
Q Consensus 439 lvDTPG~~~~~------~~~~~~~~~~l---~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~ 509 (921)
++||||+.... .........++ ..+|.+++|+|+..+.+..+.++...+...+.|+++|.||+|+... .+
T Consensus 76 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~-~~ 154 (210)
T 1pui_A 76 LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS-GA 154 (210)
T ss_dssp EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH-HH
T ss_pred EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc-hh
Confidence 99999984210 12222333343 6789999999999887776666666667778999999999998854 22
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 510 LEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 510 ~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.....+...+.+. . ....++++||+.+ .|++++.+.+.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~-~-~~~~~~~~Sal~~---------------------------~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 155 RKAQLNMVREAVLAF-N-GDVQVETFSSLKK---------------------------QGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHGGG-C-SCEEEEECBTTTT---------------------------BSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc-C-CCCceEEEeecCC---------------------------CCHHHHHHHHHHHHhh
Confidence 221122333333221 1 1357889999876 6888998888877653
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=151.69 Aligned_cols=176 Identities=15% Similarity=0.100 Sum_probs=103.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC--CcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--PILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~l~~l~ 438 (921)
..++|+|+|+.++|||||+++|+...-... ....+. .+....+.++..........+.+.. .-...++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~--------~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~ 74 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQV--------LDSMDLERERGITIKAQSVTLDYKASDGETYQLN 74 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC----------------------------------CEEEEEEECTTSCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccc--------cccchhhhcccceeeeeEEEEEEecCCCCeEEEE
Confidence 457899999999999999999986321110 000000 0000000011111111111111110 0002489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||..+. ...+..++..+|++|+|+|++++.+.+....+..+...+.|+++|+||+|+.... .+++.+.+
T Consensus 75 liDTPGh~dF----~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~--~~~v~~ei- 147 (599)
T 3cb4_D 75 FIDTPGHVDF----SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD--PERVAEEI- 147 (599)
T ss_dssp EEECCCCGGG----HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC--HHHHHHHH-
T ss_pred EEECCCchHH----HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc--HHHHHHHH-
Confidence 9999998543 3446677888999999999998888777777777777889999999999997542 23333333
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.++....+++++||+++ .|+++|.+.+.+.+..
T Consensus 148 ---~~~lg~~~~~vi~vSAktg---------------------------~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 148 ---EDIVGIDATDAVRCSAKTG---------------------------VGVQDVLERLVRDIPP 182 (599)
T ss_dssp ---HHHTCCCCTTCEEECTTTC---------------------------TTHHHHHHHHHHHSCC
T ss_pred ---HHHhCCCcceEEEeecccC---------------------------CCchhHHHHHhhcCCC
Confidence 3334544456999999987 5777777777776654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=130.00 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=84.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
...++|+|+|.+|+|||||+|+|++..+.+. +..|++.. .+ .+ ..+.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~----~~---------------~~-----------~~~~l 95 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----DY---------------DG-----------SGVTL 95 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CC---------------CC-----------TTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee----ee---------------cC-----------CeEEE
Confidence 4678999999999999999999998865331 11121110 00 00 25899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC-CCCCHHHH-HHHHHhh-------hcCCeEEEEEeCCCCCCChHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD-RPLTESEV-VFLRYTQ-------QWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~-~~~t~~e~-~~l~~l~-------~~~~~vivVlNK~D~~~~~~~~ 510 (921)
|||||...............+..+|++|||+|++ ++.+..+. .++..+. ..+.|+++|+||+|+... ...
T Consensus 96 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~ 174 (193)
T 2ged_A 96 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPP 174 (193)
T ss_dssp EEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCH
T ss_pred EECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC-CCH
Confidence 9999986554444455555667799999999998 43222221 2333322 137899999999999854 345
Q ss_pred HHHHHHHHHHHHHh
Q 002437 511 EEAISFVKENTMKL 524 (921)
Q Consensus 511 ~~v~~~~~~~~~~~ 524 (921)
+++.+.+.+.+..+
T Consensus 175 ~~~~~~l~~~l~~l 188 (193)
T 2ged_A 175 SKIKDALESEIQKV 188 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666655544
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-12 Score=142.82 Aligned_cols=107 Identities=21% Similarity=0.111 Sum_probs=46.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEE--cc-CCccchhhcccccCC-CeEEeecCCCcccccEEE
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLR--FS-DLASEEQQRCERHPD-GQYICYLPSPILKEMIIV 440 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~--~~-~~~~~~~~~~~~~~~-g~~~~~~p~~~l~~l~lv 440 (921)
++|+++|.+|+|||||+|+|++.+....+...||..++... +. ..+....... ..+. +... -+ .-...+.||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~-~~p~~~~~~--~~-~~~~~i~lv 76 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCS-PNPQNYEYR--NG-LALIPVKMV 76 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCS-CCCSSSCEE--TT-EEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhh-ccccccccc--CC-cceEEEEEE
Confidence 47999999999999999999998843344445665443322 10 0000000000 0000 0000 00 000148999
Q ss_pred eCCCCChhhhHHHHHHH---HhcCCCCEEEEEEeCCCC
Q 002437 441 DTPGTNVILQRQQRLTE---EFVPRADLVLFVISADRP 475 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~---~~l~~aD~il~V~da~~~ 475 (921)
||||+.........+.. .+++.+|++++|+|+.++
T Consensus 77 DtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 77 DVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99998532222222333 346899999999999764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=145.79 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=70.9
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC-------CCHHHHHHHHHhhhcCC-eEEEEEeCCCCCCC-
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP-------LTESEVVFLRYTQQWKK-KVVFVLNKSDLYQN- 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~-------~t~~e~~~l~~l~~~~~-~vivVlNK~D~~~~- 506 (921)
.+.||||||.. ++...+..++..+|++|+|+|++++ ...+..+.+..+...+. ++++|+||+|+...
T Consensus 85 ~~~iiDtpG~~----~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 85 FFTIIDAPGHR----DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp EEEECCCSSST----THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred EEEEEECCCcH----HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 58999999974 3445577789999999999999975 33344455555555564 69999999999862
Q ss_pred --hHHHHHHHHHHHHHHHHhh-CCCCCeEEEecccch
Q 002437 507 --AFELEEAISFVKENTMKLL-NIENVTIYPVSARST 540 (921)
Q Consensus 507 --~~~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~ 540 (921)
++.++.+.+.+.+.+...- .....+++++||+.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g 197 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG 197 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccC
Confidence 3344555566655554431 112478999999987
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=129.77 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=93.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCC-CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRY-LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|.|++... ......+++......... .+|.. ..+.++|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---------~~l~~~D 62 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM-------------VDGES---------ATIILLD 62 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEE-------------ETTEE---------EEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEE-------------ECCeE---------EEEEEEE
Confidence 458999999999999999999997432 122222222221111000 01111 1367999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~ 515 (921)
|+|.... ...+...++..+|++++|+|.++..+..... ++..+.. .+.|+++|.||+|+..... ..++..
T Consensus 63 t~~~~~~---~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~- 138 (192)
T 2cjw_A 63 MWENKGE---NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR- 138 (192)
T ss_dssp CCCC-------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-
T ss_pred eccCcch---hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-
Confidence 9997431 1123345567799999999998755444432 3333332 3689999999999863210 111111
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+... ...+++++||+++ .|++++...+.+.+.
T Consensus 139 ----~~a~~---~~~~~~e~SA~~g---------------------------~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 139 ----AXAVV---FDXKFIETSAAVQ---------------------------HNVKELFEGIVRQVR 171 (192)
T ss_dssp ----HHHHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred ----HHHHH---hCCceEEeccccC---------------------------CCHHHHHHHHHHHHH
Confidence 11111 2368999999987 688888877766543
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=146.81 Aligned_cols=102 Identities=21% Similarity=0.183 Sum_probs=65.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCC-------HHHHHHHHHhhhcCCe-EEEEEeCCCCCC--
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLT-------ESEVVFLRYTQQWKKK-VVFVLNKSDLYQ-- 505 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t-------~~e~~~l~~l~~~~~~-vivVlNK~D~~~-- 505 (921)
.+.||||||.. .+...+..++..+|++|+|+|++++.. .+..+.+..+...+.| +++|+||+|+..
T Consensus 122 ~~~iiDtPGh~----~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 122 RFSLLDAPGHK----GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEECCCCC---------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred EEEEEECCCcH----HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 58999999973 344456677899999999999987631 1333445555566776 999999999964
Q ss_pred -ChHHHHHHHHHHHHHHHHhhCCC---CCeEEEecccchH
Q 002437 506 -NAFELEEAISFVKENTMKLLNIE---NVTIYPVSARSTL 541 (921)
Q Consensus 506 -~~~~~~~v~~~~~~~~~~~~~~~---~~~v~~vSA~~~l 541 (921)
+++.++.+...+...+....+.. ..+++++||+.+.
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~ 237 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ 237 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccc
Confidence 23445556666665555442332 5789999999873
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=137.99 Aligned_cols=164 Identities=10% Similarity=0.019 Sum_probs=125.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEe------cCcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLI------AERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~iv------nd~~dla~~~~a~GvHL~~~~l~-- 170 (921)
+..+.++.+.++|++.|++++++.+.......+..+.++|+. +.++++ +++++.+.+.||||||++...+.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p 111 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRP 111 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhCc
Confidence 677888888899999999999876533334455667777777 899999 67788888999999999987653
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecCC--------------------HHHHHcccccCCCCEEEeCCCCC--CCCC--
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQT--------------------LDAAFNASSSEGADFLVCCFGEG--QKAD-- 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h~--------------------~~e~~~A~~~~gaDyv~~gpvTk--~~~g-- 224 (921)
...++...+ ++ .+ .+|++||+ .+.+.++ .+.|++++++.+++. ...|
T Consensus 112 ~~~~~~~~~~~---~~-~i--~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~-~~~G~~~i~~~~~~~~g~~~g~~ 184 (252)
T 1ka9_F 112 ELIRELADHFG---AQ-AV--VLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKG-VELGAGEILLTSMDRDGTKEGYD 184 (252)
T ss_dssp HHHHHHHHHHC---GG-GE--EEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH-HHHTCCEEEEEETTTTTTCSCCC
T ss_pred HHHHHHHHHcC---CC-cE--EEEEEEecCCCCEEEEECCCccccCCcHHHHHHHH-HHcCCCEEEEecccCCCCcCCCC
Confidence 334444443 33 22 47888862 5667888 789999998876522 2233
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
++ ..++++.+++||+|.|||+ ++|+.++.++|++||++.+|.++..
T Consensus 185 ~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 185 LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 43 4788888899999999998 5999999999999999999888764
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.2e-13 Score=152.42 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=94.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.++++|+++|++++|||||+|+|++..+........|..+..+.+. .++ ..++|||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~-------------~~~-----------~~i~~iD 57 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVE-------------TEN-----------GMITFLD 57 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCC-------------TTS-----------SCCCEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEE-------------ECC-----------EEEEEEE
Confidence 3578999999999999999999987654332222233222111110 011 2589999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH--
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE-- 519 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~-- 519 (921)
|||..... .....++..+|++|+|+|++++...+..+.+..+...+.|+++++||+|+..... +.+...+..
T Consensus 58 TPGhe~f~----~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~--~~v~~~l~~~~ 131 (501)
T 1zo1_I 58 TPGHAAFT----SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP--DRVKNELSQYG 131 (501)
T ss_dssp CCTTTCCT----TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC--CCTTCCCCCCC
T ss_pred CCCcHHHH----HHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH--HHHHHHHHHhh
Confidence 99975432 2344567889999999999987666666677777778899999999999974311 011110000
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.+.++ ...+++++||+++
T Consensus 132 ~~~~~~~-~~~~~v~vSAktG 151 (501)
T 1zo1_I 132 ILPEEWG-GESQFVHVSAKAG 151 (501)
T ss_dssp CCTTCCS-SSCEEEECCTTTC
T ss_pred hhHHHhC-CCccEEEEeeeec
Confidence 0000011 1368999999987
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-13 Score=157.01 Aligned_cols=173 Identities=19% Similarity=0.192 Sum_probs=84.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC----------CCccceeEEEEccCCccchhhcccccCCCeEEeecCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGV----------VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS 431 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~----------~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 431 (921)
...++|+++|.+|+|||||+|+|++........ .+.+..+......+.......+......+...+.++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 356789999999999999999997542111000 000000000000000000001111111111111111
Q ss_pred CcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-------CHHHHHHHHHhhhcCCe-EEEEEeCCCC
Q 002437 432 PILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-------TESEVVFLRYTQQWKKK-VVFVLNKSDL 503 (921)
Q Consensus 432 ~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-------t~~e~~~l~~l~~~~~~-vivVlNK~D~ 503 (921)
-..+.||||||...... .+..++..+|++|+|+|++.+. ..+..+.+..+...+.| +|+|+||+|+
T Consensus 254 --~~~i~iiDTPGh~~f~~----~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFIS----GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp -------CCEEESSSEEEE----ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred --CeEEEEEECCChHHHHH----HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 13589999999854322 2344567899999999998642 45555666666677775 9999999999
Q ss_pred CC-ChHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccchH
Q 002437 504 YQ-NAFELEEAISFVKENTMKLLNI--ENVTIYPVSARSTL 541 (921)
Q Consensus 504 ~~-~~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~l 541 (921)
.. +.+..+.+...+...+...++. ...+++++||+++.
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~ 368 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT 368 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc
Confidence 75 3444555555555444111232 24589999999983
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-12 Score=152.02 Aligned_cols=166 Identities=14% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEE-EEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|++..+. ....||+..... ......... ....++. ...+.++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v-----~~~~~~~---------~~~~~i~ 103 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGL-----ENDDELK---------ECLFHFW 103 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGG-----TTCSTTT---------TCEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccce-----eecCCCc---------eEEEEEE
Confidence 35689999999999999999999998754 333344322111 111100000 0000000 0248999
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC--CeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK--KKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~--~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
||||..... .....++..+|++|+|+|+++. .....++..+.... .|+++|+||+|+..... ..++ +
T Consensus 104 Dt~G~e~~~----~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~----~ 173 (535)
T 3dpu_A 104 DFGGQEIMH----ASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKK----I 173 (535)
T ss_dssp CCCSCCTTT----TTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHH----H
T ss_pred ECCcHHHHH----HHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHH----H
Confidence 999964332 2345567789999999999864 34445677776644 89999999999975421 1111 1
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
. ..+.....+++++||+++ .|+++|.+.+.+.+..
T Consensus 174 ~----~~~~~~~~~~~~vSA~~g---------------------------~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 174 N----ERFPAIENRFHRISCKNG---------------------------DGVESIAKSLKSAVLH 208 (535)
T ss_dssp H----HHCGGGTTCEEECCC--------------------------------CTTHHHHHHHHHTC
T ss_pred H----HHHHhcCCceEEEecCcc---------------------------cCHHHHHHHHHHHHhc
Confidence 2 222223467999999987 6888888888887765
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-12 Score=139.28 Aligned_cols=152 Identities=24% Similarity=0.347 Sum_probs=80.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-------ccceeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
..++|+|+|.+|+|||||+|+|++....+.+..+ .|..+....+.. ..++.. .
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~-----------~~~~~~---------~ 95 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEI-----------EERGVK---------L 95 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC---------------CEE---------E
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEe-----------ecCCcc---------c
Confidence 4588999999999999999999987665544332 121111111110 001110 1
Q ss_pred ccEEEeCCCCChhh---hHHHHHHH-------HhcC-------------CCCEEEEEEeC-CCCCCHHHHHHHHHhhhcC
Q 002437 436 EMIIVDTPGTNVIL---QRQQRLTE-------EFVP-------------RADLVLFVISA-DRPLTESEVVFLRYTQQWK 491 (921)
Q Consensus 436 ~l~lvDTPG~~~~~---~~~~~~~~-------~~l~-------------~aD~il~V~da-~~~~t~~e~~~l~~l~~~~ 491 (921)
.+.+|||||+++.. +.+..++. .|+. ++|+++|+++. .+++...+..+++.+. .+
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~ 174 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NK 174 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cC
Confidence 48999999994321 11111111 3331 34678888876 6778888888888775 56
Q ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 492 KKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 492 ~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.|+|+|+||+|+... .++...... +...+...+.++|++||+.+
T Consensus 175 ~piIlV~NK~Dl~~~-~ev~~~k~~----i~~~~~~~~i~~~~~Sa~~~ 218 (361)
T 2qag_A 175 VNIVPVIAKADTLTL-KERERLKKR----ILDEIEEHNIKIYHLPDAES 218 (361)
T ss_dssp SCEEEEEECCSSSCH-HHHHHHHHH----HHHHTTCC-CCSCCCC----
T ss_pred CCEEEEEECCCCCCH-HHHHHHHHH----HHHHHHHCCCCEEeCCCcCC
Confidence 899999999999843 333333233 33334444678999999887
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-13 Score=142.22 Aligned_cols=157 Identities=15% Similarity=0.000 Sum_probs=115.6
Q ss_pred chHHHHHHHHhcCCcEEEEe-CCCCCHHHHHHHHHHHHHHhhc-Cce-----EEecC-cHHHHHhCCCCeEEcCCCCCCH
Q 002437 100 DALDLIDEAVAKFVGIVVLN-GGEASGKSVYEAACLLKSVVKD-RAL-----FLIAE-RVDIAAAVNASGVLLSDQGLPA 171 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR-~k~~~~~~~~~~a~~l~~~~~~-~~~-----~ivnd-~~dla~~~~a~GvHL~~~~l~~ 171 (921)
+..+......++|++++++= ++..-.. ....+..+++. +.+ ||+++ .++.|.++|||||||+..+++
T Consensus 66 ~p~~~A~~~~~~GA~~isvlt~~~~f~G----~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~- 140 (254)
T 1vc4_A 66 DPVEAALAYARGGARAVSVLTEPHRFGG----SLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG- 140 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCSSSCC----CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-
T ss_pred CHHHHHHHHHHcCCCEEEEecchhhhcc----CHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-
Confidence 45788888889999999983 2221000 11233333434 677 45554 678899999999999999888
Q ss_pred HHHHHhcccCCCCccccCeEEEe----cCCHHHHHcccccCCCCEEEeCCC--CCCCCCcc-hhhhhhcC-----CCCEE
Q 002437 172 IVARNTMKDSMSESVVLPLVGRN----VQTLDAAFNASSSEGADFLVCCFG--EGQKADVI-ENSLFTNV-----KIPIF 239 (921)
Q Consensus 172 ~~~r~~~~~~~~~~~~~~~ig~S----~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~-~~~~~~~~-----~~Pv~ 239 (921)
...+.+++ .. + .+|.+ ||+.+|+.+| ...|+||++++|+ |...+++. ...+++.+ ++|++
T Consensus 141 ~~l~~l~~---~a-~---~lGl~~lvev~~~~E~~~a-~~~gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vI 212 (254)
T 1vc4_A 141 ELTGAYLE---EA-R---RLGLEALVEVHTERELEIA-LEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLV 212 (254)
T ss_dssp GGHHHHHH---HH-H---HHTCEEEEEECSHHHHHHH-HHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHH---HH-H---HCCCeEEEEECCHHHHHHH-HHcCCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEE
Confidence 77787653 11 1 23444 7999999999 8999999999998 33344555 45566555 78999
Q ss_pred EEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 240 IMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 240 aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
|.|||+ ++|+..+.+ |++||+|..|.++.-
T Consensus 213 AegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~ 243 (254)
T 1vc4_A 213 AESGYSRKEELKALEG-LFDAVLIGTSLMRAP 243 (254)
T ss_dssp EESCCCSHHHHHTTTT-TCSEEEECHHHHTSS
T ss_pred EEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCC
Confidence 999998 999999999 999999999988763
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=131.09 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=115.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHH----HHHHHHHHHHhhcCce-----EEecCc-HHHHHhCCCCeEEcCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSV----YEAACLLKSVVKDRAL-----FLIAER-VDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~----~~~a~~l~~~~~~~~~-----~ivnd~-~dla~~~~a~GvHL~~~~l 169 (921)
+..+......++|+..+..=. +..+ .+..+.+++.+ +.+ |+++++ ++.|.++|||||||+..++
T Consensus 73 ~p~~~A~~y~~~GA~~isvlt----d~~~f~Gs~~~l~~ir~~v--~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l 146 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVT----EQRRFQGSLDDLDAVRASV--SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAAL 146 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEEC----CGGGHHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGS
T ss_pred CHHHHHHHHHHcCCCEEEEec----ChhhcCCCHHHHHHHHHhC--CCCEEECccccCHHHHHHHHHcCCCEEEEecccC
Confidence 455666666689999998732 2222 12233333333 344 555664 9999999999999999888
Q ss_pred CHHHHHHhcccCC-CCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCC--CCCCCcc-hhhhhhcC--CCCEEEEcC
Q 002437 170 PAIVARNTMKDSM-SESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGE--GQKADVI-ENSLFTNV--KIPIFIMNA 243 (921)
Q Consensus 170 ~~~~~r~~~~~~~-~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvT--k~~~g~~-~~~~~~~~--~~Pv~aiGG 243 (921)
+....+.+..... .+ . .+.++|||.+|+.+| .+.|+||+++++.. ...+++. ...+++.+ ++||+|.||
T Consensus 147 ~~~~l~~l~~~a~~lG-l---~~lvev~t~ee~~~A-~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegG 221 (272)
T 3qja_A 147 EQSVLVSMLDRTESLG-M---TALVEVHTEQEADRA-LKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESG 221 (272)
T ss_dssp CHHHHHHHHHHHHHTT-C---EEEEEESSHHHHHHH-HHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESC
T ss_pred CHHHHHHHHHHHHHCC-C---cEEEEcCCHHHHHHH-HHCCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECC
Confidence 8666554431000 01 1 356789999999999 79999999999872 2244555 46777766 699999999
Q ss_pred CC-ccChHHHHHcCCcEEEEeecccccchH
Q 002437 244 SP-LVDVSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 244 i~-~~~~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
|+ ++|+..+.++|++||+|.+|.++.-.+
T Consensus 222 I~t~edv~~l~~~GadgvlVGsal~~a~dp 251 (272)
T 3qja_A 222 VRGTADLLAYAGAGADAVLVGEGLVTSGDP 251 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHHTCSCH
T ss_pred CCCHHHHHHHHHcCCCEEEEcHHHhCCCCH
Confidence 98 999999999999999999998876443
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=130.94 Aligned_cols=161 Identities=13% Similarity=0.026 Sum_probs=116.3
Q ss_pred CchHHHHHHHHhcCCcEEEEeC------CCCCHHHHHHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCeEEcCCC
Q 002437 99 GDALDLIDEAVAKFVGIVVLNG------GEASGKSVYEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASGVLLSDQ 167 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~------k~~~~~~~~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~GvHL~~~ 167 (921)
..+.+.++.+.++|++++|++. ++.+ .-.+.++++++.|. . .+.+++|+ +++.+.++|+||||+...
T Consensus 23 ~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~--~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~ 100 (230)
T 1rpx_A 23 SKLGEQVKAIEQAGCDWIHVDVMDGRFVPNIT--IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE 100 (230)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC--CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCcccccc--cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEec
Confidence 3778889999999999999994 3333 12467888888874 3 67788897 688899999999988776
Q ss_pred --C--CCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEE---EeCCC-CCC---CCCcc-hhhhhhc
Q 002437 168 --G--LPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFL---VCCFG-EGQ---KADVI-ENSLFTN 233 (921)
Q Consensus 168 --~--l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv---~~gpv-Tk~---~~g~~-~~~~~~~ 233 (921)
. .+...++.+.+ .+ . .+|.++ ++..+...+ ...++||+ .++|. +.. ..++. .+++++.
T Consensus 101 ~~~~~~~~~~~~~~~~---~g-~---~ig~~~~p~t~~e~~~~-~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~ 172 (230)
T 1rpx_A 101 QSSTIHLHRTINQIKS---LG-A---KAGVVLNPGTPLTAIEY-VLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKI 172 (230)
T ss_dssp TTTCSCHHHHHHHHHH---TT-S---EEEEEECTTCCGGGGTT-TTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHH---cC-C---cEEEEeCCCCCHHHHHH-HHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHH
Confidence 3 32334454432 22 2 466666 566666666 57899999 56565 222 11222 3555554
Q ss_pred C-----CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 234 V-----KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 234 ~-----~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
. ++||++.|||+++|+.++.++||+||++.++..+.
T Consensus 173 ~~~~~~~~pi~v~GGI~~~n~~~~~~aGad~vvvgSaI~~a 213 (230)
T 1rpx_A 173 CAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp HHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred HHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 4 79999999999999999999999999999988764
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-11 Score=139.05 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=86.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCCCCc--cceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGVVPT--TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~~~t--T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
..++|+|+|.+|+|||||+|+|++..... .+.... ....+...+... ...+..........+.+. ...+.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~---E~~rGiTi~~~~~~~~~~---~~~i~ 85 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEM---EKQRGISITTSVMQFPYH---DCLVN 85 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------CCTTEEEEEET---TEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchh---cccCCcceeeeEEEEEEC---CeEEE
Confidence 46899999999999999999999642111 000000 000000011000 001111111111111111 02589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||..+.. ..+..++..+|++|+|+|+.++.......++..+...+.|+++|+||+|+.... ..++.+.+.
T Consensus 86 liDTPG~~df~----~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~--~~~~~~~i~ 159 (529)
T 2h5e_A 86 LLDTPGHEDFS----EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD--PMELLDEVE 159 (529)
T ss_dssp EECCCCSTTCC----HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC--HHHHHHHHH
T ss_pred EEECCCChhHH----HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc--HHHHHHHHH
Confidence 99999985433 346678899999999999999888888888888888889999999999997642 233444444
Q ss_pred HH
Q 002437 519 EN 520 (921)
Q Consensus 519 ~~ 520 (921)
+.
T Consensus 160 ~~ 161 (529)
T 2h5e_A 160 NE 161 (529)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=137.38 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=82.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
...|+++|.||+|||||+|+|++.+....++..||..+........+ ..+.|+|||
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~------------------------~~i~l~D~p 127 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG------------------------AKIQMLDLP 127 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT------------------------EEEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC------------------------cEEEEEeCC
Confidence 46899999999999999999999988778888898877654322111 148999999
Q ss_pred CCChhh---hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHH-Hhh-----hcCCeEEEEEeCCCCC
Q 002437 444 GTNVIL---QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLR-YTQ-----QWKKKVVFVLNKSDLY 504 (921)
Q Consensus 444 G~~~~~---~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~-~l~-----~~~~~vivVlNK~D~~ 504 (921)
|+.... ......+...++.||++++|+|+++|. .+.+.+. .+. -..+|.++++||+|..
T Consensus 128 Gl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 128 GIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp GGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccCCchhhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 984221 112334556778999999999999764 3333322 222 2457889999999963
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=144.44 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=95.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCC--CCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKR--YLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~--~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
...++|+|+|.+|+|||||+|+|++.. +...+ ..+ ..+...+... ...+..........+.+. ...++
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~---~~~~~D~~~~---e~~~giTi~~~~~~~~~~---~~~i~ 78 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHE---GASQMDWMEQ---EQDRGITITSAATTAAWE---GHRVN 78 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------------CCSEEEEEET---TEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccC---Cceecccchh---hhhcCceEeeeeEEEEEC---CeeEE
Confidence 356899999999999999999999521 11100 000 0000000000 000011111111111111 12589
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||..... ..+..++..+|++|+|+|+.++.+.....++..+...+.|+++|+||+|+... +..++.+.++
T Consensus 79 liDTPG~~df~----~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~--~~~~~~~~l~ 152 (693)
T 2xex_A 79 IIDTPGHVDFT----VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA--NFEYSVSTLH 152 (693)
T ss_dssp EECCCCCSSCC----HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC--CHHHHHHHHH
T ss_pred EEECcCCcchH----HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc--chHHHHHHHH
Confidence 99999986443 23566778899999999999988888888888888889999999999999864 3444555554
Q ss_pred HHHHHhhCCCCCeEEEecccc
Q 002437 519 ENTMKLLNIENVTIYPVSARS 539 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~ 539 (921)
..+... ..+.++++|+..
T Consensus 153 ~~l~~~---~~~~~ipisa~~ 170 (693)
T 2xex_A 153 DRLQAN---AAPIQLPIGAED 170 (693)
T ss_dssp HHHCCC---EEESEEEECCGG
T ss_pred HHhCCC---ceeEEeecccCC
Confidence 433211 123466777633
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=124.30 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|++|+|||||+|.|+|..+... ..|+.. .+...... .+|.. -.+.++|
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~-------------~~g~~---------~~~~i~D 60 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQ-------------VDGKT---------IKAQIWD 60 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEE-------------ETTEE---------EEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEE-------------ECCEE---------EEEEEEE
Confidence 357999999999999999999999865432 223221 11111110 01110 1367899
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||... .......++..+|++++|+|.....+..+. .++..+.. .+.|+++|+||+|+..... ..++....
T Consensus 61 t~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l 136 (199)
T 2f9l_A 61 TAGQER----YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF 136 (199)
T ss_dssp CSSGGG----TTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred CCCchh----hhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHH
Confidence 999632 223455667889999999999876544443 34444433 4679999999999863211 11222221
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ......++.+||+.+ .|+.++.+.+.+.+.
T Consensus 137 ~--------~~~~~~~~d~Sal~~---------------------------~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 137 A--------EKNNLSFIETSALDS---------------------------TNVEEAFKNILTEIY 167 (199)
T ss_dssp H--------HHTTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred H--------HHcCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 113467888999876 577777777766554
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=128.67 Aligned_cols=163 Identities=9% Similarity=-0.013 Sum_probs=115.3
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCC-HHHH---HHHHHHHHHHhh-c-CceEEecC---cHHHHHhCCCCeE--EcCCC
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEAS-GKSV---YEAACLLKSVVK-D-RALFLIAE---RVDIAAAVNASGV--LLSDQ 167 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~-~~~~---~~~a~~l~~~~~-~-~~~~ivnd---~~dla~~~~a~Gv--HL~~~ 167 (921)
.++.+.++.+.+.|++++|++.++.+ ...+ .+.++++++.|. . .+-+.+|| +++.+.++|+||| |..+.
T Consensus 16 ~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~ 95 (220)
T 2fli_A 16 ANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTEST 95 (220)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCcc
Confidence 37778899999999999999975543 1111 567888888874 3 56677787 5889999999999 55655
Q ss_pred CCCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEe---CCC-C---CCCCCcc-hhhhhhcC---
Q 002437 168 GLPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVC---CFG-E---GQKADVI-ENSLFTNV--- 234 (921)
Q Consensus 168 ~l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~---gpv-T---k~~~g~~-~~~~~~~~--- 234 (921)
+.+....+.+.+ .+ . .+|+++ ++..+..++ ...++||+.+ +|. + +.+.++. .+.+++..
T Consensus 96 ~~~~~~~~~~~~---~g-~---~i~~~~~~~t~~e~~~~-~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~ 167 (220)
T 2fli_A 96 RHIHGALQKIKA---AG-M---KAGVVINPGTPATALEP-LLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEK 167 (220)
T ss_dssp SCHHHHHHHHHH---TT-S---EEEEEECTTSCGGGGGG-GTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHH---cC-C---cEEEEEcCCCCHHHHHH-HHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhc
Confidence 555444455432 22 2 466666 666666666 5678999954 454 1 1222222 24444433
Q ss_pred --CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 235 --KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 235 --~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++||++.|||+++|+.++.++|++||++.++..+.
T Consensus 168 ~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvGsai~~~ 204 (220)
T 2fli_A 168 GLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKA 204 (220)
T ss_dssp TCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred CCCceEEEECcCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 79999999999999999999999999999888765
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.4e-10 Score=121.64 Aligned_cols=217 Identities=18% Similarity=0.149 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCccHHHH-HHHH-HHHhcCCCCeEEEEEeCCCCCHHHHHHHHHC------CCCCCCC
Q 002437 322 REKQLIETERSVLLEAIDVIKKASPLMEEV-SLLI-DAVSQIDEPFLLVIVGEYNSGKSSVINALLG------KRYLKDG 393 (921)
Q Consensus 322 ~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~-~~l~-~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg------~~~~~~~ 393 (921)
-.+.+++.+++.+.+.+..++........- ..+. ...........++++|++|||||||+|+|.| .++...+
T Consensus 11 ~~~~~~~~~r~~l~r~i~~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 11 LRERLLAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHcCCHHHHHHHHHHHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 356777888888888888776543322221 1222 2223456778999999999999999999984 3333223
Q ss_pred CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHHHH
Q 002437 394 VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQQR 454 (921)
Q Consensus 394 ~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~~~ 454 (921)
..+++.... ... ..............+.+....|.. ...+++||||||+.... .
T Consensus 91 ~d~~~~~~~-~~~--~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~- 163 (337)
T 2qm8_A 91 VDPSSTRTG-GSI--LGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE---T- 163 (337)
T ss_dssp ECGGGGSSC-CCS--SCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---H-
T ss_pred EcCcccccc-cch--HHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch---h-
Confidence 222221100 000 000000000000011111101100 01369999999986321 1
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCC----C
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI----E 528 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~----~ 528 (921)
.....+|++++|+|+..+. +.+ .+.. ...+.++|+||+|+....+......+.+...+. ++.. +
T Consensus 164 ---~v~~~~d~vl~v~d~~~~~---~~~---~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~-l~~~~~~~~ 233 (337)
T 2qm8_A 164 ---AVADLTDFFLVLMLPGAGD---ELQ---GIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALH-ILTPPSATW 233 (337)
T ss_dssp ---HHHTTSSEEEEEECSCC------------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHT-TBCCSBTTB
T ss_pred ---hHHhhCCEEEEEEcCCCcc---cHH---HHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHH-hccccccCC
Confidence 2237899999999986432 111 1111 123567888999986543222222222222221 1121 1
Q ss_pred CCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 529 NVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 529 ~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.++++++||+.+ .|+++|.+.|.+...
T Consensus 234 ~~~vl~~Sal~g---------------------------~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 234 TPPVVTISGLHG---------------------------KGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCCEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 478999999887 789999998887654
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-11 Score=129.31 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=124.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l~-- 170 (921)
++.+.++.+.++|++.+++++++............+..+++. +.+++++ ++++.+.+.||||||++...++
T Consensus 31 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~p 110 (253)
T 1thf_D 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENP 110 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhCh
Confidence 677888888899999999999876533444456667777777 8999998 6788888899999999987553
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC-------------------CH-HHHHcccccCCCCEEEeCCCCCC----CCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ-------------------TL-DAAFNASSSEGADFLVCCFGEGQ----KAD 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h-------------------~~-~e~~~A~~~~gaDyv~~gpvTk~----~~g 224 (921)
...++..+| ++ ++ .+|++|+ +. +.+..+ .+.|+|++++.++++. .++
T Consensus 111 ~~~~~~~~~~g---~~-~i--~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~-~~~G~~~i~~~~~~~~g~~~g~~ 183 (253)
T 1thf_D 111 SLITQIAQTFG---SQ-AV--VVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEV-EKRGAGEILLTSIDRDGTKSGYD 183 (253)
T ss_dssp HHHHHHHHHHC---GG-GE--EEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH-HHTTCSEEEEEETTTTTSCSCCC
T ss_pred HHHHHHHHHcC---CC-cE--EEEEEEEccCCcEEEEECCCccccCCCHHHHHHHH-HHCCCCEEEEEeccCCCCCCCCC
Confidence 344444444 33 21 4788886 34 556777 7899999998766322 223
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
++ ..++++.+++||+|.|||+ ++|+.++.++|++||++.+|.+...
T Consensus 184 ~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~ 231 (253)
T 1thf_D 184 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 231 (253)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCC
Confidence 33 4778888899999999998 5999999999999999988887764
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.21 E-value=9.8e-11 Score=141.56 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=92.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC--CCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR--YLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~--~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
..++|+|+|.+|+|||||+|+|+... +...+ ..+.+ +...+... ...+..........+.+. ...++|
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~---~~~d~~~~---E~~~giTi~~~~~~~~~~---~~~i~l 81 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGA---ATMDFMEQ---ERERGITITAAVTTCFWK---DHRINI 81 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------------CCEEEEEET---TEEEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCc---eeccCchh---hhhcccccccceEEEEEC---CeEEEE
Confidence 46799999999999999999998321 10000 00000 00000000 000001111111111111 125899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
|||||..+. ...+..++..+|++|+|+|+.++.+......+..+...+.|+++|+||+|+... +..++.+.+++
T Consensus 82 iDTPG~~df----~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~--~~~~~~~~l~~ 155 (691)
T 1dar_A 82 IDTPGHVDF----TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA--DLWLVIRTMQE 155 (691)
T ss_dssp ECCCSSTTC----HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC--CHHHHHHHHHH
T ss_pred EECcCccch----HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC--CHHHHHHHHHH
Confidence 999998543 345677788899999999999998888888888888889999999999999854 34444444443
Q ss_pred HHHHhhCC-CCCeEEEecc
Q 002437 520 NTMKLLNI-ENVTIYPVSA 537 (921)
Q Consensus 520 ~~~~~~~~-~~~~v~~vSA 537 (921)
. ++. ..+.++|+|+
T Consensus 156 ~----l~~~~~~~~~Pi~~ 170 (691)
T 1dar_A 156 R----LGARPVVMQLPIGR 170 (691)
T ss_dssp T----TCCCEEECEEEESC
T ss_pred H----hCCCccceeccccC
Confidence 3 332 1234566665
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=140.26 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=94.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCC--CCC-C-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLK--DGV-V-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~--~~~-~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+..+|+|+|+.++|||||..+|+-..-.. .|. . .+...-++ .+....+.+|..........+.|.. ..++
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~---~D~~~~EreRGITI~s~~~~~~~~~---~~iN 103 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHAT---SDWMAMERERGISVTTSVMQFPYRD---RVVN 103 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-----------------------CTTTEEEEEETT---EEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccc---cCChHHHHHCCCcEeeceEEEEECC---EEEE
Confidence 45789999999999999999997321100 000 0 00000011 1111222344444444444444432 2489
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||.-++..+ +...++-+|.+|+|+|+..+...+...+++.+.+.+.|+|+++||+|.... +...+.+.++
T Consensus 104 lIDTPGHvDF~~E----v~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a--d~~~~~~~i~ 177 (548)
T 3vqt_A 104 LLDTPGHQDFSED----TYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL--HPLDVMADIE 177 (548)
T ss_dssp EECCCCGGGCSHH----HHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC--CHHHHHHHHH
T ss_pred EEeCCCcHHHHHH----HHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc--chhHhhhhhh
Confidence 9999998665544 666778899999999999999999999999999999999999999998765 4566666666
Q ss_pred HHH
Q 002437 519 ENT 521 (921)
Q Consensus 519 ~~~ 521 (921)
+.+
T Consensus 178 ~~l 180 (548)
T 3vqt_A 178 QHL 180 (548)
T ss_dssp HHH
T ss_pred hhc
Confidence 554
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.6e-11 Score=129.56 Aligned_cols=102 Identities=23% Similarity=0.096 Sum_probs=56.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc-cccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL-KEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l-~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++......+...||..++.......+.......... .|.... ..+.+||||
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~--------~~~~~~~~~i~lvDtp 74 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIV--------KPERILPTTMEFVDIA 74 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHH--------CCSEEECCEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeee--------cccceeeeEEEEEECC
Confidence 68999999999999999999998754445555565443211111110000000000 000000 248999999
Q ss_pred CCChhhhHHH---HHHHHhcCCCCEEEEEEeCCC
Q 002437 444 GTNVILQRQQ---RLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 444 G~~~~~~~~~---~~~~~~l~~aD~il~V~da~~ 474 (921)
|+........ .....+++.+|++++|+|+.+
T Consensus 75 Gl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 75 GLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp SCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 9864322111 123446789999999999975
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-07 Score=108.94 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc----ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT----NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
...+|+|+|.+|+|||||+|+|+|..... ...++| ..+...... .|......+.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~---------------------~~~~~~~~i~ 94 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVP---------------------HPKKPGHILV 94 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEE---------------------CSSSTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecc---------------------cccCCCceEE
Confidence 45789999999999999999999987431 223333 222111000 0000113589
Q ss_pred EEeCCCCChhhh----HHHHH-HHHhcCCCCEEEEEEeCCCCCCHHHHHHHH
Q 002437 439 IVDTPGTNVILQ----RQQRL-TEEFVPRADLVLFVISADRPLTESEVVFLR 485 (921)
Q Consensus 439 lvDTPG~~~~~~----~~~~~-~~~~l~~aD~il~V~da~~~~t~~e~~~l~ 485 (921)
||||||+.+... ....+ +...+- ++ ++|+|+...++..+...+.
T Consensus 95 LiDTpGi~~~~~~~~~~~~~~fala~ll-ss--~lv~n~~~~i~~~dl~~l~ 143 (592)
T 1f5n_A 95 LLDTEGLGDVEKGDNQNDSWIFALAVLL-SS--TFVYNSIGTINQQAMDQLY 143 (592)
T ss_dssp EEEECCBCCGGGCCCTTHHHHHHHHHHH-CS--EEEEEEESCSSHHHHHTTH
T ss_pred EecCCCcCcccccchhHHHHHHHHHHHh-cC--eEEEECCCCccHHHHHHHH
Confidence 999999975422 11111 112221 33 4566767778888887544
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-10 Score=137.94 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC----Cccccc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS----PILKEM 437 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~----~~l~~l 437 (921)
...++|+|+|..++|||||+++|+...-............+...+... ...+..........+.+.. .....+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~---E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQ---EQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhh---HHhcCceeeeceEEEEECCccccCCceeE
Confidence 456899999999999999999997532110000000000011111000 0011111111111111111 001358
Q ss_pred EEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 438 IIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
+||||||..+ +...+..++..+|++|+|+|+.++...+...++..+...+.|+++|+||+|+... +..++.+.+
T Consensus 85 ~liDTPG~~d----f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~--~~~~~~~~l 158 (704)
T 2rdo_7 85 NIIDTPGHVD----FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA--NFLKVVNQI 158 (704)
T ss_pred EEEeCCCccc----hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc--cHHHHHHHH
Confidence 9999999853 3345667888999999999999888777777888887888999999999998754 345555555
Q ss_pred HHHH
Q 002437 518 KENT 521 (921)
Q Consensus 518 ~~~~ 521 (921)
+..+
T Consensus 159 ~~~l 162 (704)
T 2rdo_7 159 KTRL 162 (704)
T ss_pred HHHh
Confidence 5443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.4e-11 Score=119.58 Aligned_cols=143 Identities=23% Similarity=0.270 Sum_probs=86.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|++|+|||||+|.|.+..... ...||.. .+...... .+|.. -.+.++|
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~-------------~~g~~---------~~~~i~D 84 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQ-------------VDGKT---------IKAQIWD 84 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEE-------------ETTEE---------EEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEE-------------ECCEE---------EEEEEEE
Confidence 45899999999999999999999976543 2233322 11111110 01110 0256799
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||.... ...+..++..+|.+++|+|.....+..+. .++..+.. ...|+++|+||+|+..... ..+.....
T Consensus 85 t~g~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l 160 (191)
T 1oix_A 85 TAGLERY----RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160 (191)
T ss_dssp ECSCCSS----SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCCCcch----hhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 9997422 22345567889999999998765443333 24444432 4579999999999863211 11222221
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ......++.+||+.+
T Consensus 161 ~--------~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 161 A--------EKNGLSFIETSALDS 176 (191)
T ss_dssp H--------HHTTCEEEECCTTTC
T ss_pred H--------HHcCCEEEEEeCCCC
Confidence 1 113467888999876
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-11 Score=126.64 Aligned_cols=85 Identities=22% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCEEEEEEeCCCC--CCHHHH-HHHHHhh----hcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEE
Q 002437 462 RADLVLFVISADRP--LTESEV-VFLRYTQ----QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYP 534 (921)
Q Consensus 462 ~aD~il~V~da~~~--~t~~e~-~~l~~l~----~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~ 534 (921)
.+|++|+|+|++++ .+.... .++..+. ..+.|+++|+||+|+... ..+++ ........ ...+++.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v~~----~~~~~~~~---~~~~~~e 233 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RYIRD----AHTFALSK---KNLQVVE 233 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HHHHH----HHHHHHTS---SSCCEEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HHHHH----HHHHHHhc---CCCeEEE
Confidence 69999999999886 565554 3444443 246899999999998632 22222 22211111 2468999
Q ss_pred ecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 535 VSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 535 vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
+||+++ .|++++.+.+.+.+
T Consensus 234 ~SAk~g---------------------------~gv~elf~~l~~~l 253 (255)
T 3c5h_A 234 TSARSN---------------------------VNVDLAFSTLVQLI 253 (255)
T ss_dssp CBTTTT---------------------------BSHHHHHHHHHHHH
T ss_pred EECCCC---------------------------CCHHHHHHHHHHHh
Confidence 999987 68888887776654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.4e-10 Score=136.35 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=89.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
....+|+++|+.|+|||||+++|++................ ..+.......+..........+.+. -..++|+|
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~---~~d~~~~e~~~giti~~~~~~~~~~---~~~~nliD 80 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTT---TTDYTPEAKLHRTTVRTGVAPLLFR---GHRVFLLD 80 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCC---SSCCSHHHHHTTSCCSCEEEEEEET---TEEEEEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcc---cccCCHHHHhcCCeEEecceEEeeC---CEEEEEEe
Confidence 45678999999999999999999964321100000000000 0000000001111111111111111 12489999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
|||.... ...+..++..+|++++|+|+.++.......++..+...+.|+++|+||+|+. . ...++.+.+.+.
T Consensus 81 TpG~~~f----~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~--~~~~~~~~l~~~ 152 (665)
T 2dy1_A 81 APGYGDF----VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-G--DYYALLEDLRST 152 (665)
T ss_dssp CCCSGGG----HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-C--CHHHHHHHHHHH
T ss_pred CCCccch----HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-h--hHHHHHHHHHHH
Confidence 9998533 3456778889999999999999888888888888888899999999999987 3 234444444443
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-11 Score=130.28 Aligned_cols=160 Identities=10% Similarity=0.067 Sum_probs=120.5
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEe------cCcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLI------AERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~iv------nd~~dla~~~~a~GvHL~~~~l~-- 170 (921)
+..+.++.+.++|++.++++++..+..........+..+| . +.++++ +++++.+.+.||||||+|...++
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p 109 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDP 109 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhhCh
Confidence 5678888888999999999986443222222355667777 6 889999 67788888999999999987543
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC---------------CHHH-HHcccccCCCCEEEeCCCC----CCCCCcc-h
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ---------------TLDA-AFNASSSEGADFLVCCFGE----GQKADVI-E 227 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h---------------~~~e-~~~A~~~~gaDyv~~gpvT----k~~~g~~-~ 227 (921)
...+ ..+| + .+ .+|++|| +..+ +.++ .+.|++++++.+++ ...++++ .
T Consensus 110 ~~~~~~-~~~g----~-~i--~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~-~~~G~~~i~~t~~~~~g~~~g~~~~~i 180 (241)
T 1qo2_A 110 SFLKSL-REID----V-EP--VFSLDTRGGRVAFKGWLAEEEIDPVSLLKRL-KEYGLEEIVHTEIEKDGTLQEHDFSLT 180 (241)
T ss_dssp THHHHH-HTTT----C-EE--EEEEEEETTEECCTTCSSCSCCCHHHHHHHH-HTTTCCEEEEEETTHHHHTCCCCHHHH
T ss_pred HHHHHH-HHcC----C-cE--EEEEEecCCEEEECCceecCCCCHHHHHHHH-HhCCCCEEEEEeecccccCCcCCHHHH
Confidence 3344 3342 2 22 5788884 7766 4667 78999999997762 2233444 5
Q ss_pred hhhhhcCCCCEEEEcCCC-ccChHHHHHc-----C-CcEEEEeeccccc
Q 002437 228 NSLFTNVKIPIFIMNASP-LVDVSKFLKS-----G-ASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~-----G-a~gva~~~a~~~~ 269 (921)
.++++.+++||+|.|||+ ++|+.++.+. | ++||++.+|.++.
T Consensus 181 ~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~ 229 (241)
T 1qo2_A 181 KKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp HHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred HHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcC
Confidence 788888899999999998 5999999998 9 9999998887764
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-11 Score=130.16 Aligned_cols=163 Identities=13% Similarity=0.054 Sum_probs=118.4
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l~-- 170 (921)
++.+.++.+.++|++++|++.++......... ..+..+|+. +.++++| ++++.+.+.|||+||++...++
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~p 111 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETP 111 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhCH
Confidence 66788888889999999999743211111122 455666666 8899998 6677888899999999987654
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC--------------CHHH-HHcccccCCCCEEEeCCCCCC----CCCcc-hh
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ--------------TLDA-AFNASSSEGADFLVCCFGEGQ----KADVI-EN 228 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h--------------~~~e-~~~A~~~~gaDyv~~gpvTk~----~~g~~-~~ 228 (921)
.....+.+| . ++ .+|.+|+ +..+ +..+ .+.|+|++++-++++. .+++. ..
T Consensus 112 ~~~~~~~~~~g----~-~~--~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~-~~~G~~~i~~~~~~~~~~~~g~~~~~~~ 183 (244)
T 1vzw_A 112 EWVAKVIAEHG----D-KI--AVGLDVRGTTLRGRGWTRDGGDLYETLDRL-NKEGCARYVVTDIAKDGTLQGPNLELLK 183 (244)
T ss_dssp HHHHHHHHHHG----G-GE--EEEEEEETTEECCSSSCCCCCBHHHHHHHH-HHTTCCCEEEEEC-------CCCHHHHH
T ss_pred HHHHHHHHHcC----C-cE--EEEEEccCCEEEEcCcccCCCCHHHHHHHH-HhCCCCEEEEeccCcccccCCCCHHHHH
Confidence 334444443 2 21 5788887 6555 5777 7899999998777332 22333 47
Q ss_pred hhhhcCCCCEEEEcCCCc-cChHHHHHc---CCcEEEEeecccccch
Q 002437 229 SLFTNVKIPIFIMNASPL-VDVSKFLKS---GASGFVISLEDLSLFN 271 (921)
Q Consensus 229 ~~~~~~~~Pv~aiGGi~~-~~~~~~~~~---Ga~gva~~~a~~~~~~ 271 (921)
++++..++||+|.|||+. +|+.++.++ ||+||++.+|.+..-+
T Consensus 184 ~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~ 230 (244)
T 1vzw_A 184 NVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAF 230 (244)
T ss_dssp HHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSS
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCC
Confidence 788888999999999995 999999999 9999999988877543
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=125.16 Aligned_cols=167 Identities=13% Similarity=0.031 Sum_probs=118.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCC---
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGL--- 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l--- 169 (921)
++.+.++.+.++|++.+++++++.+..........+..+++. +.+++++ ++++.+.+.||||||+++..+
T Consensus 31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~ 110 (266)
T 2w6r_A 31 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHFRE 110 (266)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC----
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHhCC
Confidence 677888888999999999999765422111124556667777 8899984 456677778999999999887
Q ss_pred -CHHHHHHhcccCC--CCccccCeEEEecC-------------------CHHH-HHcccccCCCCEEEeCCCCCC--CCC
Q 002437 170 -PAIVARNTMKDSM--SESVVLPLVGRNVQ-------------------TLDA-AFNASSSEGADFLVCCFGEGQ--KAD 224 (921)
Q Consensus 170 -~~~~~r~~~~~~~--~~~~~~~~ig~S~h-------------------~~~e-~~~A~~~~gaDyv~~gpvTk~--~~g 224 (921)
+....+......+ ++ .+ +++++++ +..+ +..+ ...|+++|++..+++. ..|
T Consensus 111 ~~~~~~~~~~~~~g~~~~-~i--~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~-~~~G~~~i~~t~~~~~g~~~g 186 (266)
T 2w6r_A 111 IDMRELKEYLKKHGGSGQ-AV--VVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEV-EKRGAGEILLTSIDRDGTKSG 186 (266)
T ss_dssp --CHHHHHHCC----CCC-EE--EEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH-HHTTCSEEEEEETTTTTTCSC
T ss_pred CCHHHHHHHHHHcCCCCC-EE--EEEEEEEecCCCEEEEECCCceecchhHHHHHHHH-HHcCCCEEEEEeecCCCCcCC
Confidence 5566666642111 12 21 4777874 4445 5777 7899999999665322 223
Q ss_pred --cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 225 --VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 225 --~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
+. ..++++.+++||+|.|||+ ++++.++.++||+||++.+|.++..
T Consensus 187 ~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~ 236 (266)
T 2w6r_A 187 YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 236 (266)
T ss_dssp CCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC---
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCC
Confidence 33 4788888899999999998 5999999999999999999988764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.12 E-value=5.9e-08 Score=115.66 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=77.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEc---c------------CCcc-----chh--------h
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRF---S------------DLAS-----EEQ--------Q 415 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~---~------------~~~~-----~~~--------~ 415 (921)
.+.|+|+|+.|||||||+|+|.|. ..|.+.+.+|.....+.. . .... .+. .
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred CCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 456999999999999999999997 334222223332222110 0 0000 000 0
Q ss_pred c----ccccCCCeEEeecCCCcccccEEEeCCCCChh---------hhHHHHHHHHhcCC-CCEEEEEEeCCCCC-CHHH
Q 002437 416 R----CERHPDGQYICYLPSPILKEMIIVDTPGTNVI---------LQRQQRLTEEFVPR-ADLVLFVISADRPL-TESE 480 (921)
Q Consensus 416 ~----~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~---------~~~~~~~~~~~l~~-aD~il~V~da~~~~-t~~e 480 (921)
. ........+......+...++.|+|.||+... ......++..|+.+ ..++++|++++... +...
T Consensus 124 ~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~ 203 (608)
T 3szr_A 124 AIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEA 203 (608)
T ss_dssp HHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHH
T ss_pred HhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHH
Confidence 0 00000111111111222346999999987421 23445667777654 46677777766443 3445
Q ss_pred HHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 481 VVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 481 ~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
..++..+...+.++|+|+||+|+...
T Consensus 204 l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 204 LSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred HHHHHHHhhcCCceEEEecchhhcCc
Confidence 67778888888999999999999865
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.8e-11 Score=126.67 Aligned_cols=134 Identities=12% Similarity=0.183 Sum_probs=109.7
Q ss_pred hHHHHHHHHhcCCcEE--EEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHh
Q 002437 101 ALDLIDEAVAKFVGIV--VLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNT 177 (921)
Q Consensus 101 ~~~~~~~~l~~g~~~v--qlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~ 177 (921)
+.+.++++++.|++.| |+|.+..+..++++.++++.++|+. |.++++- .+++|+|+ +.+
T Consensus 101 ~~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~--------~~~~G~~l-~~~--------- 162 (273)
T 2qjg_A 101 IVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAM--------MYPRGKHI-QNE--------- 162 (273)
T ss_dssp ECSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEE--------EEECSTTC-SCT---------
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEE--------eCCCCccc-CCC---------
Confidence 3567889999999999 9999999999999999999999998 9988883 23578888 221
Q ss_pred cccCCCCccccCeEEEecCCHHHH-HcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCccC-------
Q 002437 178 MKDSMSESVVLPLVGRNVQTLDAA-FNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPLVD------- 248 (921)
Q Consensus 178 ~~~~~~~~~~~~~ig~S~h~~~e~-~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~------- 248 (921)
+ |+|+.+++ ..| .+.|+||+.++| +.++. ..++++.+++||+|+|||+..|
T Consensus 163 ------------~---~~~~~~~~a~~a-~~~Gad~i~~~~----~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~ 222 (273)
T 2qjg_A 163 ------------R---DPELVAHAARLG-AELGADIVKTSY----TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQM 222 (273)
T ss_dssp ------------T---CHHHHHHHHHHH-HHTTCSEEEECC----CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHH
T ss_pred ------------C---CHhHHHHHHHHH-HHcCCCEEEECC----CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHH
Confidence 1 56777777 777 799999999996 24555 5778888899999999999877
Q ss_pred hHHHHHcCCcEEEEeecccccchH
Q 002437 249 VSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 249 ~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
+.++.++|++||++.++.+...++
T Consensus 223 ~~~~~~~Ga~gv~vg~~i~~~~~~ 246 (273)
T 2qjg_A 223 IKDAMEAGAAGVAVGRNIFQHDDV 246 (273)
T ss_dssp HHHHHHHTCSEEECCHHHHTSSSH
T ss_pred HHHHHHcCCcEEEeeHHhhCCCCH
Confidence 888889999999988887765443
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-10 Score=128.07 Aligned_cols=162 Identities=18% Similarity=0.160 Sum_probs=100.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
....|+++|.+|||||||+|+|++......+...+|..++....... + ...++++||
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~------------~-----------~~~~~l~Dt 212 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS------------E-----------EERFTLADI 212 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS------------S-----------SCEEEEEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec------------C-----------cceEEEEec
Confidence 34579999999999999999999986433444555544332211100 0 024899999
Q ss_pred CCCChhhhH---HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-----cCCeEEEEEeCCCCCCChHHHHHH
Q 002437 443 PGTNVILQR---QQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-----WKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 443 PG~~~~~~~---~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-----~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
||+...... ........+..+|.+|+|+|.+ .....+.. ..+++.. ...|.++|+||+|.... ..++.+
T Consensus 213 pGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l 290 (416)
T 1udx_A 213 PGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKAL 290 (416)
T ss_dssp CCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHH
Confidence 998421111 0011233467899999999997 22223332 2222221 35799999999998743 222222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhccC
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDGS 584 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~~ 584 (921)
.+.+. ....+++++||+++ .|+++|.+.+.+.+...
T Consensus 291 ----~~~l~----~~g~~vi~iSA~~g---------------------------~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 291 ----ADALA----REGLAVLPVSALTG---------------------------AGLPALKEALHALVRST 326 (416)
T ss_dssp ----HHHHH----TTTSCEEECCTTTC---------------------------TTHHHHHHHHHHHHHTS
T ss_pred ----HHHHH----hcCCeEEEEECCCc---------------------------cCHHHHHHHHHHHHHhc
Confidence 22222 12468999999886 68888888888887643
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=9e-10 Score=124.61 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=86.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC------ccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP------TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~------tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+.|+++|++|+|||||+|.|+|......+... .|.....+.+... ..+ ....+
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q-----------~~~---------~~~~L 90 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK-----------EGG---------VQLLL 90 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--------------------------CEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe-----------cCC---------cccce
Confidence 478999999999999999999998764333211 1111111111000 001 11258
Q ss_pred EEEeCCCCChhhhH---HHH-------HHHH-----------hc--CCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcCCe
Q 002437 438 IIVDTPGTNVILQR---QQR-------LTEE-----------FV--PRADLVLFVISAD-RPLTESEVVFLRYTQQWKKK 493 (921)
Q Consensus 438 ~lvDTPG~~~~~~~---~~~-------~~~~-----------~l--~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~~~ 493 (921)
+++||||++..... ... .... ++ .++|++||+++.. +.+...+..+++.+.. +.|
T Consensus 91 tv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~ 169 (418)
T 2qag_C 91 TIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN 169 (418)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE
T ss_pred eeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc
Confidence 99999998642110 011 1111 23 3355677777765 6788888888888875 789
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 494 VVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 494 vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+|+|+||+|+.. ..++......+.+.+... +.++|.+|++.+
T Consensus 170 iIlVinK~Dll~-~~ev~~~k~~i~~~~~~~----~i~~~~~sa~~~ 211 (418)
T 2qag_C 170 IIPLIAKADTLT-PEECQQFKKQIMKEIQEH----KIKIYEFPETDD 211 (418)
T ss_dssp EEEEEESTTSSC-HHHHHHHHHHHHHHHHHH----TCCCCCCC----
T ss_pred EEEEEEcccCcc-HHHHHHHHHHHHHHHHHc----CCeEEeCCCCCC
Confidence 999999999984 345555555555555443 467888898765
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-10 Score=117.52 Aligned_cols=158 Identities=11% Similarity=-0.005 Sum_probs=118.3
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHH-HHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACL-LKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~-l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
+...+.+++++++|+++|+++.++.+..+.++..++ +..+|-. |. ++.+++++.|.+.||++||.++.+.....+.+
T Consensus 46 ~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGT-Vlt~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~ 124 (232)
T 4e38_A 46 EDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGT-ILNGEQALAAKEAGATFVVSPGFNPNTVRACQ 124 (232)
T ss_dssp GGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEEC-CCSHHHHHHHHHHTCSEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECC-cCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 477899999999999999999988777665544333 2334444 54 66789999999999999999987765555444
Q ss_pred hcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHHHHH
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSKFLK 254 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~ 254 (921)
..| -. .+-| |.|+.|+.+| .+.|+||+-+=|-. .-.|+. .+.++... ++|+++.|||+++|+.+.++
T Consensus 125 ~~g---i~----~ipG--v~TptEi~~A-~~~Gad~vK~FPa~-~~gG~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~ 193 (232)
T 4e38_A 125 EIG---ID----IVPG--VNNPSTVEAA-LEMGLTTLKFFPAE-ASGGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLA 193 (232)
T ss_dssp HHT---CE----EECE--ECSHHHHHHH-HHTTCCEEEECSTT-TTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHT
T ss_pred HcC---CC----EEcC--CCCHHHHHHH-HHcCCCEEEECcCc-cccCHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHH
Confidence 333 11 1335 5699999999 89999999986641 112455 57777765 69999999999999999999
Q ss_pred cCCcEEEEeecccc
Q 002437 255 SGASGFVISLEDLS 268 (921)
Q Consensus 255 ~Ga~gva~~~a~~~ 268 (921)
+|+.++++.++..+
T Consensus 194 aGa~~~vgGs~l~~ 207 (232)
T 4e38_A 194 IPQVLACGGTWMVD 207 (232)
T ss_dssp STTBCCEEECGGGC
T ss_pred CCCeEEEECchhcC
Confidence 99998766555543
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=142.12 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=99.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC---------
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--------- 431 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--------- 431 (921)
....++|+|+|++|+|||||+|+|++.........+.+..+ ..+ ...+..+..........+.+..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~--~D~---~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~ 90 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF--TDT---RKDEQERGITIKSTAISLYSEMSDEDVKEIK 90 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHHCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCcee--ecC---chhhhhcceeEeeceeEEEeccccccccccc
Confidence 34568999999999999999999986522111111111000 000 0000001111111111111110
Q ss_pred ----CcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCC--
Q 002437 432 ----PILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQ-- 505 (921)
Q Consensus 432 ----~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~-- 505 (921)
.....+.||||||..... ..+..+++.+|++|+|+|+.++.+.+....+..+...+.|+++|+||+|+..
T Consensus 91 ~~~~~~~~~i~liDTPG~~df~----~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e 166 (842)
T 1n0u_A 91 QKTDGNSFLINLIDSPGHVDFS----SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLE 166 (842)
T ss_dssp SCCCSSEEEEEEECCCCCCSSC----HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHT
T ss_pred ccccCCCceEEEEECcCchhhH----HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhh
Confidence 001248999999986543 3466778899999999999999888888888877778899999999999862
Q ss_pred ---ChHH----HHHHHHHHHHHHHHhh----C-----CCCCeEEEecccch
Q 002437 506 ---NAFE----LEEAISFVKENTMKLL----N-----IENVTIYPVSARST 540 (921)
Q Consensus 506 ---~~~~----~~~v~~~~~~~~~~~~----~-----~~~~~v~~vSA~~~ 540 (921)
+.++ +..+.+.++..+..+. + ....+|.+.|++.+
T Consensus 167 ~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g 217 (842)
T 1n0u_A 167 LQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHG 217 (842)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTT
T ss_pred hccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccc
Confidence 2222 3444454444443211 1 11235788898776
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-10 Score=119.46 Aligned_cols=143 Identities=17% Similarity=0.260 Sum_probs=86.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCC---CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDG---VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~---~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+|+++|..|+|||||++.+.+... +.. ..||.. +...... . .-.+.||||
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig-~~~~~v~---------------~----------~v~LqIWDT 53 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSN-PSLEHFS---------------T----------LIDLAVMEL 53 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCS-CCCEEEC---------------S----------SSCEEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeee-eeeEEEc---------------c----------EEEEEEEEC
Confidence 478999999999999998886532 211 222221 1111000 0 025899999
Q ss_pred CCCChhhh-HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHH----HHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 443 PGTNVILQ-RQQRLTEEFVPRADLVLFVISADRPLTESEVVF----LRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 443 PG~~~~~~-~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~----l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||...... .. .+..|++.++++|||+|.++. ....... +..+.. .+.|+++|.||+|+..++ +..+..+
T Consensus 54 AGQErf~~~~l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~-~R~~~~R 129 (331)
T 3r7w_B 54 PGQLNYFEPSY--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED-FKVDAQR 129 (331)
T ss_dssp CSCSSSCCCSH--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH-HHHHHHH
T ss_pred CCchhccchhh--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh-hhhhHHH
Confidence 99854321 11 367788999999999999877 3333333 333332 357999999999998653 2222233
Q ss_pred HHHHHHH-HhhCC----CCCeEEEecccc
Q 002437 516 FVKENTM-KLLNI----ENVTIYPVSARS 539 (921)
Q Consensus 516 ~~~~~~~-~~~~~----~~~~v~~vSA~~ 539 (921)
.+..... ++... .+.++|.+||+.
T Consensus 130 ~V~~~~~~~la~~~~~~~~i~f~eTSAkd 158 (331)
T 3r7w_B 130 DIMQRTGEELLELGLDGVQVSFYLTSIFD 158 (331)
T ss_dssp HHHHHHHHTTSSSSCSCCCEEEECCCSSS
T ss_pred HhhHHHHHHHHhhcccccCceEEEeccCC
Confidence 3333222 22221 357888899975
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=129.48 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=115.5
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEE---------ecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccC
Q 002437 112 FVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFL---------IAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDS 181 (921)
Q Consensus 112 g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~i---------vnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~ 181 (921)
|+.+++.|.+..+..++.++++.+.++|+. ++.+. +++..+++.+.|+|.||+.....+....+.+..
T Consensus 66 gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~-- 143 (369)
T 3bw2_A 66 GVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDREVIARLRR-- 143 (369)
T ss_dssp EEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCHHHHHHHHH--
T ss_pred EEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHH--
Confidence 788889999888888899999999999998 87763 355688999999999888765545556666543
Q ss_pred CCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCC------CCCC--------CC-cc-hhhhhhcCCCCEEEEcCC
Q 002437 182 MSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFG------EGQK--------AD-VI-ENSLFTNVKIPIFIMNAS 244 (921)
Q Consensus 182 ~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpv------Tk~~--------~g-~~-~~~~~~~~~~Pv~aiGGi 244 (921)
.+ . .++.+||+.+++..| ...|+|||.+ ||. +..+ .+ +. ..++++..++||++.|||
T Consensus 144 -~g-~---~v~~~v~t~~~a~~a-~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI 217 (369)
T 3bw2_A 144 -AG-T---LTLVTATTPEEARAV-EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGI 217 (369)
T ss_dssp -TT-C---EEEEEESSHHHHHHH-HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSC
T ss_pred -CC-C---eEEEECCCHHHHHHH-HHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCC
Confidence 23 2 578899999999999 8999999999 764 1111 22 22 366777789999999999
Q ss_pred -CccChHHHHHcCCcEEEEeecccc
Q 002437 245 -PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 245 -~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+++|+.++++.||+||++.++.+.
T Consensus 218 ~~~~~~~~~l~~GAd~V~vGs~~~~ 242 (369)
T 3bw2_A 218 MRGGQIAAVLAAGADAAQLGTAFLA 242 (369)
T ss_dssp CSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhC
Confidence 999999999999999998776654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=125.57 Aligned_cols=106 Identities=16% Similarity=0.045 Sum_probs=59.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcc-cccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRC-ERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|++......+...+|..++.......+....... ...+... .|......+.+||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~----~~~~~~~~i~lvDtp 77 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGER----VPPVVPTHVEFVDIA 77 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTB----CCCEECCEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhccccc----ccccCCceEEEEECC
Confidence 57999999999999999999987533344445554443322211110000000 0000000 000000248999999
Q ss_pred CCChhh---hHHHHHHHHhcCCCCEEEEEEeCCC
Q 002437 444 GTNVIL---QRQQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 444 G~~~~~---~~~~~~~~~~l~~aD~il~V~da~~ 474 (921)
|+.... +........+++.+|++++|+|+.+
T Consensus 78 Gl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 78 GLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 985321 1112334556789999999999975
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=117.64 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=66.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEEAI 514 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~v~ 514 (921)
++.+|||||... .+.+ +-..++.+++|+|+....... .......+.|+++|+||+|+.... .+.+++.
T Consensus 110 d~iiidt~G~~~-~~~~------~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 110 DLLLIENVGNLI-CPVD------FDLGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp SEEEEEEEEBSS-GGGG------CCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCCC-CCch------hccccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCcchhhHHHHHH
Confidence 689999999511 1111 113578999999988654321 112222457899999999986321 1234444
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+.+. .. + ...+++++||+++ .|++++.+.+.+.+..
T Consensus 179 ~~~~----~~-~-~~~~i~~~Sa~~g---------------------------~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAK----LI-N-PRAKIIEMDLKTG---------------------------KGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHH----HH-C-TTSEEEECBTTTT---------------------------BTHHHHHHHHHHHHC-
T ss_pred HHHH----Hh-C-CCCeEEEeecCCC---------------------------CCHHHHHHHHHHHHHH
Confidence 4333 22 2 3478999999987 6899999988877654
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=139.09 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=90.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|+.++|||||..+|+-..-............ .+.+....+.+|..........+.|.. ..++||||||
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~---~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlIDTPG 76 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT---TRTDNTLLERQRGITIQTGITSFQWEN---TKVNIIDTPG 76 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSC---CSTTCSTTHHHHSSCSSCCCCCCBCSS---CBCCCEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCC---cccCCcHHHHhCCCcEEeeeEEEEECC---EEEEEEECCC
Confidence 5799999999999999999973211100000000000 012223333445544444433333332 3589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.-++..+ +...++-+|.+|+|+|+..+...+....++.+...+.|.|+++||+|....
T Consensus 77 H~DF~~E----v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 77 HMDFLAE----VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp SSSTHHH----HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred cHHHHHH----HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 8655443 667778899999999999999888889999999999999999999998754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-10 Score=124.37 Aligned_cols=146 Identities=18% Similarity=0.287 Sum_probs=86.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC---CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVV---PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~---~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
|.++|+|++|+|||||+|+|+|..+...... +.+. ...+.+.. ....+...++++|
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~-~~~i~~v~--------------------Q~~~l~~~ltv~D 101 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQ-LQSNTYDL--------------------QESNVRLKLTIVS 101 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCE-EEEEEEEE--------------------EC--CEEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccce-EeeEEEEe--------------------ecCccccccchhh
Confidence 4599999999999999999999854321111 1110 00111100 0001112589999
Q ss_pred CCCCChhh--------------hHHHHHHHHhc---------CCC--C-EEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE
Q 002437 442 TPGTNVIL--------------QRQQRLTEEFV---------PRA--D-LVLFVISADRPLTESEVVFLRYTQQWKKKVV 495 (921)
Q Consensus 442 TPG~~~~~--------------~~~~~~~~~~l---------~~a--D-~il~V~da~~~~t~~e~~~l~~l~~~~~~vi 495 (921)
+||++... ........++. .++ | +++||+|+.++++..+.++++.+. .+.|+|
T Consensus 102 ~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI 180 (427)
T 2qag_B 102 TVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNII 180 (427)
T ss_dssp EECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEE
T ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEE
Confidence 99986321 11122223321 122 3 477788888899999999999998 688999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 496 FVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 496 vVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+|+||+|.+. .+++......+++.+.. .+.+||++|.
T Consensus 181 ~Vi~KtD~Lt-~~E~~~l~~~I~~~L~~----~gi~I~~is~ 217 (427)
T 2qag_B 181 PIIAKADAIS-KSELTKFKIKITSELVS----NGVQIYQFPT 217 (427)
T ss_dssp EEESCGGGSC-HHHHHHHHHHHHHHHBT----TBCCCCCCC-
T ss_pred EEEcchhccc-hHHHHHHHHHHHHHHHH----cCCcEEecCC
Confidence 9999999985 45666666666654433 4567777774
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-11 Score=122.39 Aligned_cols=160 Identities=10% Similarity=-0.014 Sum_probs=120.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCC------CHHHHHHHHHHHHHHhhcCceEEecCc---HHHHHhCCCCe--EEcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEA------SGKSVYEAACLLKSVVKDRALFLIAER---VDIAAAVNASG--VLLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~------~~~~~~~~a~~l~~~~~~~~~~ivnd~---~dla~~~~a~G--vHL~~~~ 168 (921)
.+.+.++.+.++|++++|++..+. +-. ...++.+++.|..++.+++++. ++.+.+.|||| ||..+.+
T Consensus 27 ~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G--~~~v~~lr~~~~~DvhLMv~~p~~~i~~~~~aGAd~itvH~ea~~ 104 (237)
T 3cu2_A 27 QLNEEVTTLLENQINVLHFDIADGQFSSLFTVG--AIGIKYFPTHCFKDVHLMVRNQLEVAKAVVANGANLVTLQLEQYH 104 (237)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBC--THHHHTSCTTSEEEEEEECSCHHHHHHHHHHTTCSEEEEETTCTT
T ss_pred cHHHHHHHHHHcCCCEEEEEEecCccccchhhh--HHHHHHHhhhCCCCeEEEEECHHHHHHHHHHcCCCEEEEecCCcc
Confidence 677889999999999999997532 110 1466777777754788999998 89999999999 9999987
Q ss_pred CCHHHHHHhcccCCC---------CccccCeEEEec--CCHHHHHcccccCCCCEEEe---CCC--CCC--CCCcc-hhh
Q 002437 169 LPAIVARNTMKDSMS---------ESVVLPLVGRNV--QTLDAAFNASSSEGADFLVC---CFG--EGQ--KADVI-ENS 229 (921)
Q Consensus 169 l~~~~~r~~~~~~~~---------~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~---gpv--Tk~--~~g~~-~~~ 229 (921)
.+....+.+.+ . + . .+|+++ +++.+..+. ...++|||.+ +|. +.+ +..++ .++
T Consensus 105 ~~~~~i~~i~~---~~~~~~~~~~g-~---~~gv~l~p~Tp~~~l~~-~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~ 176 (237)
T 3cu2_A 105 DFALTIEWLAK---QKTTYANQVYP-V---LIGACLCPETPISELEP-YLDQIDVIQLLTLDPRNGTKYPSELILDRVIQ 176 (237)
T ss_dssp SHHHHHHHHTT---CEEEETTEEEE-C---EEEEEECTTSCGGGGTT-TTTTCSEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred cHHHHHHHHHh---cccccccccCC-c---eEEEEEeCCChHHHHHH-HhhcCceeeeeeeccCcCCeecChhHHHHHHH
Confidence 76666676643 3 2 2 577777 677776666 5779999966 787 222 22233 344
Q ss_pred hhhcC-----CCCEEEEcCCCccChHHHHH--cCCcEEEEeeccccc
Q 002437 230 LFTNV-----KIPIFIMNASPLVDVSKFLK--SGASGFVISLEDLSL 269 (921)
Q Consensus 230 ~~~~~-----~~Pv~aiGGi~~~~~~~~~~--~Ga~gva~~~a~~~~ 269 (921)
+++.. ++|+.+.|||+++|+..+.+ +||+++++.+|.++.
T Consensus 177 lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 177 VEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp HHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred HHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 44443 69999999999999999999 999999999998774
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-10 Score=119.62 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=104.1
Q ss_pred chHHHHHHHHhcCCcEEEEeC--CCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNG--GEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~--k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.....+++|++.|++.||+|. ++.+..+.++.+.++.+.|+. +.++|+|.+ ++|+|+++..
T Consensus 93 ~~~~~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~--------~~G~~~~~~~-------- 156 (263)
T 1w8s_A 93 VANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESF--------PRGGKVVNET-------- 156 (263)
T ss_dssp EESSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEEC--------CCSTTCCCTT--------
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEee--------CCCCccccCC--------
Confidence 344668999999999999999 888889999999999999998 999999844 3688886421
Q ss_pred hcccCCCCccccCeEEEecCCHHH-HHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCC-CEEEEcCCCcc------
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDA-AFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNVKI-PIFIMNASPLV------ 247 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e-~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~-Pv~aiGGi~~~------ 247 (921)
|+|.... ++.| .+.|||||.+|. + .+++ .+.+++.+++ ||+|+|||+.+
T Consensus 157 -----------------s~~~i~~a~~~a-~~~GAD~vkt~~-~---~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l 214 (263)
T 1w8s_A 157 -----------------APEIVAYAARIA-LELGADAMKIKY-T---GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFL 214 (263)
T ss_dssp -----------------CHHHHHHHHHHH-HHHTCSEEEEEC-C---SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHH
T ss_pred -----------------CHHHHHHHHHHH-HHcCCCEEEEcC-C---CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHH
Confidence 2233333 3445 678999999983 1 2444 5777777787 99999999876
Q ss_pred -ChHHHHHcCCcEEEEeeccccc
Q 002437 248 -DVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 248 -~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++..++++||+|+++.++.+..
T Consensus 215 ~~i~~~~~aGA~GvsvgraI~~~ 237 (263)
T 1w8s_A 215 KQVEGVLEAGALGIAVGRNVWQR 237 (263)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTS
T ss_pred HHHHHHHHcCCeEEEEehhhcCC
Confidence 7888889999999998888765
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.2e-11 Score=124.72 Aligned_cols=162 Identities=17% Similarity=0.082 Sum_probs=117.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~~l~-- 170 (921)
++.+.++.+.++|+++++++..+......... ..+..+++. +.++++| ++++.+.+.|||+||++...++
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~p 110 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENP 110 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhhCh
Confidence 55678888889999999999742110001112 445555666 7899998 6788888899999999987654
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC------------------C-HHHHHcccccCCCCEEEeCCCCCC----CCCc
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ------------------T-LDAAFNASSSEGADFLVCCFGEGQ----KADV 225 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h------------------~-~~e~~~A~~~~gaDyv~~gpvTk~----~~g~ 225 (921)
.....+.+| .. . .+|.+++ + .+.+..+ .+.|+|++++-++++. .+++
T Consensus 111 ~~~~~~~~~~g---~~-~---~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~-~~~G~~~i~~~~~~~~~~~~g~~~ 182 (244)
T 2y88_A 111 QWCARVIGEHG---DQ-V---AVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERL-DSEGCSRFVVTDITKDGTLGGPNL 182 (244)
T ss_dssp HHHHHHHHHHG---GG-E---EEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHH-HHTTCCCEEEEETTTTTTTSCCCH
T ss_pred HHHHHHHHHcC---CC-E---EEEEeccccCCCCEEEECCccCCCCCHHHHHHHH-HhCCCCEEEEEecCCccccCCCCH
Confidence 334444443 22 1 5677776 3 5666777 7899999999887443 2333
Q ss_pred c-hhhhhhcCCCCEEEEcCCCc-cChHHHHHc---CCcEEEEeecccccc
Q 002437 226 I-ENSLFTNVKIPIFIMNASPL-VDVSKFLKS---GASGFVISLEDLSLF 270 (921)
Q Consensus 226 ~-~~~~~~~~~~Pv~aiGGi~~-~~~~~~~~~---Ga~gva~~~a~~~~~ 270 (921)
+ ..++++..++||+|.|||+. +|+.++.++ |++||++.++.+...
T Consensus 183 ~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~ 232 (244)
T 2y88_A 183 DLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARR 232 (244)
T ss_dssp HHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTS
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCC
Confidence 3 46777788999999999985 999999998 999999988887753
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-10 Score=120.25 Aligned_cols=176 Identities=9% Similarity=0.051 Sum_probs=115.9
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCC---------------------CCHHHHHHHHHHHHHHhhcCceE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGE---------------------ASGKSVYEAACLLKSVVKDRALF 145 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~---------------------~~~~~~~~~a~~l~~~~~~~~~~ 145 (921)
..|+++++. +...+.+.++.+.++|+++|+++.+- .+.....+.++++++.+ +.++
T Consensus 21 ~~~i~~g~~-~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~--~~Pv 97 (262)
T 1rd5_A 21 IPYITAGDP-DLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL--SCPV 97 (262)
T ss_dssp EEEEETTSS-CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC--SSCE
T ss_pred EEEeeCCCC-CHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCE
Confidence 578877653 23467888888889999999998543 34455555555555432 6788
Q ss_pred EecCcHHH--------HHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCC-HHHHHcccccCCCCEEEeC
Q 002437 146 LIAERVDI--------AAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQT-LDAAFNASSSEGADFLVCC 216 (921)
Q Consensus 146 ivnd~~dl--------a~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~-~~e~~~A~~~~gaDyv~~g 216 (921)
+++++++. |.+.|+||||++ |++...++++.+.-+..+. ..++.+++++ .+.+... ...+.+|+.++
T Consensus 98 ~~m~~~~~~~~~~~~~a~~aGadgv~v~--d~~~~~~~~~~~~~~~~g~-~~i~~~a~~t~~e~~~~~-~~~~~g~v~~~ 173 (262)
T 1rd5_A 98 VLLSYYKPIMFRSLAKMKEAGVHGLIVP--DLPYVAAHSLWSEAKNNNL-ELVLLTTPAIPEDRMKEI-TKASEGFVYLV 173 (262)
T ss_dssp EEECCSHHHHSCCTHHHHHTTCCEEECT--TCBTTTHHHHHHHHHHTTC-EECEEECTTSCHHHHHHH-HHHCCSCEEEE
T ss_pred EEEecCcHHHHHHHHHHHHcCCCEEEEc--CCChhhHHHHHHHHHHcCC-ceEEEECCCCCHHHHHHH-HhcCCCeEEEe
Confidence 88765553 888999999996 4443334433210000000 0146677765 4444544 35566777766
Q ss_pred CC---CCC--CC---Ccc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 217 FG---EGQ--KA---DVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 217 pv---Tk~--~~---g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++ |.. .. ... ...+++..++||++.|||+ ++|+.++.++||+||+|.+|..+.
T Consensus 174 s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 174 SVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp CSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred cCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhH
Confidence 55 332 21 111 3667777799999999998 999999999999999988887655
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-09 Score=113.61 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=71.1
Q ss_pred ccEEEeCCCCChhhhHH--HHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-H----HHHhhhcCCeEEEEEeCCCCCCChH
Q 002437 436 EMIIVDTPGTNVILQRQ--QRLTEEFVPRADLVLFVISADRPLTESEVV-F----LRYTQQWKKKVVFVLNKSDLYQNAF 508 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~--~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~----l~~l~~~~~~vivVlNK~D~~~~~~ 508 (921)
+++||||||........ .......+.. +++|+|+|+.......+.. . +......+.|+++|+||+|+... .
T Consensus 110 d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~-~ 187 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE-E 187 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH-H
T ss_pred CEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc-c
Confidence 69999999985332110 1122345566 9999999987655544432 1 12233457899999999999754 2
Q ss_pred HHHHHHHHHH------HHH-----------------HHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccc
Q 002437 509 ELEEAISFVK------ENT-----------------MKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHW 565 (921)
Q Consensus 509 ~~~~v~~~~~------~~~-----------------~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 565 (921)
+.+++.+.++ ..+ ...++ ...+++++||+++
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~SA~~~------------------------- 241 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL-PPVRVLYLSAKTR------------------------- 241 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS-CCCCCEECCTTTC-------------------------
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc-CcccceEEEecCc-------------------------
Confidence 2333322221 011 01112 2247899999886
Q ss_pred cccchHHHHHHHHHhhc
Q 002437 566 RINTFDKLEKLLYSFLD 582 (921)
Q Consensus 566 ~~sg~~~L~~~l~~~l~ 582 (921)
.|+++|.+.+.+.+.
T Consensus 242 --~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 242 --EGFEDLETLAYEHYC 256 (262)
T ss_dssp --TTHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHhc
Confidence 689999988887664
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=7.2e-10 Score=117.39 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=113.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCCC--
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGLP-- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l~-- 170 (921)
+..+.++.+.++|++.+++.+.+............+..+++. +.++++++ +++.+.+.|||+||++...+.
T Consensus 34 ~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~~~ 113 (253)
T 1h5y_A 34 DPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNP 113 (253)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCT
T ss_pred cHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhCc
Confidence 567888888899999999998765321122233445555555 78999986 566677789999999865431
Q ss_pred --HHHHHHhcccCCCCccccCeEEEecC-------------------C-HHHHHcccccCCCCEEEeCCCC----CCCCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRNVQ-------------------T-LDAAFNASSSEGADFLVCCFGE----GQKAD 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S~h-------------------~-~~e~~~A~~~~gaDyv~~gpvT----k~~~g 224 (921)
...++..+| .+ .+ .++.+++ + .+.+..+ .+.|+||+++.+++ +..++
T Consensus 114 ~~~~~~~~~~g---~~-~i--~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~-~~~G~d~i~~~~~~~~g~~~~~~ 186 (253)
T 1h5y_A 114 QLVALLAREFG---SQ-ST--VVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEV-EELGAGEILLTSIDRDGTGLGYD 186 (253)
T ss_dssp HHHHHHHHHHC---GG-GE--EEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHH-HHHTCSEEEEEETTTTTTCSCCC
T ss_pred HHHHHHHHHcC---CC-cE--EEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHH-HhCCCCEEEEecccCCCCcCcCC
Confidence 222333333 22 11 3565553 3 3556677 78899999998873 22333
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. ...+++..++||++.|||+ ++|+.++.++||+||++.++.++.
T Consensus 187 ~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~ 233 (253)
T 1h5y_A 187 VELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 233 (253)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcC
Confidence 33 4677777899999999998 499999999999999998887664
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-11 Score=132.42 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=80.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCC------C-CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLK------D-GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~------~-~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
...|+++|.+|+|||||+|+|++..... + ....||.....+... .+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---------------------------~~ 212 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD---------------------------EE 212 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS---------------------------SS
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec---------------------------CC
Confidence 3579999999999999999999863211 2 222344433332211 24
Q ss_pred cEEEeCCCCChhh---hH-HHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHH
Q 002437 437 MIIVDTPGTNVIL---QR-QQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 437 l~lvDTPG~~~~~---~~-~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
+.++||||+.... .. ..+....+ ....+.++|++++.+.........+..+...+.|+++|+||+|.... .+.
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~-~~~ 291 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR-TKL 291 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE-EEH
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc-ccH
Confidence 8999999996432 10 11222333 36789999999986432222333355566677899999999999854 455
Q ss_pred HHHHHHHHHHH
Q 002437 511 EEAISFVKENT 521 (921)
Q Consensus 511 ~~v~~~~~~~~ 521 (921)
+...+.+.+.+
T Consensus 292 ~~~~~~~~~~~ 302 (368)
T 3h2y_A 292 EKADELYKNHA 302 (368)
T ss_dssp HHHHHHHHHHB
T ss_pred HHHHHHHHHHh
Confidence 66666655543
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-10 Score=125.97 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCcEE-EEe-----CCCCCHHHHHHHHHHHHHHhhc-CceEEecCcH------HHHHhCCCCeEEcCCCC
Q 002437 102 LDLIDEAVAKFVGIV-VLN-----GGEASGKSVYEAACLLKSVVKD-RALFLIAERV------DIAAAVNASGVLLSDQG 168 (921)
Q Consensus 102 ~~~~~~~l~~g~~~v-qlR-----~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~------dla~~~~a~GvHL~~~~ 168 (921)
.+.++.+.++|++.| +++ .+......+......+..+++. +.+++++++. +++.+.|||||+ +...
T Consensus 31 ~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a~GAd~V~-~~~~ 109 (305)
T 2nv1_A 31 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYID-ESEV 109 (305)
T ss_dssp HHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHHHTCSEEE-ECTT
T ss_pred HHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHHHCCCCEEE-Eecc
Confidence 477888889999999 775 1111100000012234444555 7888887665 788899999998 5555
Q ss_pred CCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe------CCC--C------------------CC-
Q 002437 169 LPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC------CFG--E------------------GQ- 221 (921)
Q Consensus 169 l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~------gpv--T------------------k~- 221 (921)
++....+.......-. ..+++++|+.+++.+| ...|+|||.+ ||+ | +.
T Consensus 110 l~~~~~~~~i~~~~~g----~~v~~~~~~~~e~~~a-~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~ 184 (305)
T 2nv1_A 110 LTPADEEFHLNKNEYT----VPFVCGCRDLGEATRR-IAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDE 184 (305)
T ss_dssp SCCSCSSCCCCGGGCS----SCEEEEESSHHHHHHH-HHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred CCHHHHHHHHHHhccC----CcEEEEeCCHHHHHHH-HHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchh
Confidence 4443333332100011 1578899999999999 7999999998 554 2 11
Q ss_pred --------CCCcc-hhhhhhcCCCCEE--EEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 222 --------KADVI-ENSLFTNVKIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 222 --------~~g~~-~~~~~~~~~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+.++. ..++.+..++||+ +.||| +++|+.++..+||+||++.++.+..
T Consensus 185 ~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~ 244 (305)
T 2nv1_A 185 LMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 244 (305)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGS
T ss_pred hhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcC
Confidence 12222 3566777789999 99999 8999999999999999999998864
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=111.37 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=108.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ec---CcHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IA---ERVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vn---d~~dla~~~~a~GvH 163 (921)
...+.++++.++|+..+++.. . +..+.++..+ +.+++ +. ++++.+...|+|+||
T Consensus 24 ~~~~~a~~~~~~Ga~~i~~~~----~----~~i~~i~~~~--~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~ 93 (223)
T 1y0e_A 24 IMSKMALAAYEGGAVGIRANT----K----EDILAIKETV--DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIA 93 (223)
T ss_dssp HHHHHHHHHHHHTCSEEEEES----H----HHHHHHHHHC--CSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHHCCCeeeccCC----H----HHHHHHHHhc--CCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEE
Confidence 556777777799999998842 1 2344444443 44553 11 246677888999999
Q ss_pred cCCCCCC---------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----C--c
Q 002437 164 LSDQGLP---------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----D--V 225 (921)
Q Consensus 164 L~~~~l~---------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g--~ 225 (921)
++..... ...+|... |+ . .++.++|+.+++.++ ...|+||+.+++. |.... + +
T Consensus 94 l~~~~~~~p~~~~~~~i~~~~~~~----~~-~---~v~~~~~t~~e~~~~-~~~G~d~i~~~~~g~t~~~~~~~~~~~~~ 164 (223)
T 1y0e_A 94 LDATLQQRPKETLDELVSYIRTHA----PN-V---EIMADIATVEEAKNA-ARLGFDYIGTTLHGYTSYTQGQLLYQNDF 164 (223)
T ss_dssp EECSCSCCSSSCHHHHHHHHHHHC----TT-S---EEEEECSSHHHHHHH-HHTTCSEEECTTTTSSTTSTTCCTTHHHH
T ss_pred EeeecccCcccCHHHHHHHHHHhC----CC-c---eEEecCCCHHHHHHH-HHcCCCEEEeCCCcCcCCCCCCCCCcccH
Confidence 9876532 23455554 34 3 578899999999999 8999999999876 43211 1 1
Q ss_pred c-hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 226 I-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 226 ~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
. ..++++..++||+|.||| +++|+.+++++||++|++.++.++
T Consensus 165 ~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 165 QFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (223)
T ss_dssp HHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 2 367777789999999999 999999999999999999888665
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.9e-11 Score=132.94 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=83.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC-----CCCCCC-CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK-----RYLKDG-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~-----~~~~~~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
...|+++|.+|+|||||+|+|++. ....++ ...||.....+... .++
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---------------------------~~~ 214 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---------------------------SGA 214 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---------------------------TTC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---------------------------CCe
Confidence 357999999999999999999986 333222 33455544433221 248
Q ss_pred EEEeCCCCChhh---hHH-HHHHHHhc--CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 438 IIVDTPGTNVIL---QRQ-QRLTEEFV--PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 438 ~lvDTPG~~~~~---~~~-~~~~~~~l--~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
.++||||+.... ... .+....++ ...|.++|++++.+......+..+..+...+.|+++++||+|.... .+.+
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~-~~~~ 293 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR-TKLE 293 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE-EEGG
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc-ccHH
Confidence 999999995332 111 12222333 7789999999986432222333355566677899999999998754 3445
Q ss_pred HHHHHHHHHH
Q 002437 512 EAISFVKENT 521 (921)
Q Consensus 512 ~v~~~~~~~~ 521 (921)
...+.+++.+
T Consensus 294 ~~~~~~~~~~ 303 (369)
T 3ec1_A 294 KADSLYANQL 303 (369)
T ss_dssp GHHHHHHHHB
T ss_pred HHHHHHHHhc
Confidence 5555555543
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=115.67 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=114.3
Q ss_pred chHHHHHHHHhcCCcEEEEeC-CC---CCHHHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNG-GE---ASGKSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~-k~---~~~~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l 169 (921)
+..+......++|+..+..=. +. .+.. + ...+++.+ +.+++..| .++.|..+|||+|+|....+
T Consensus 80 dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~-~---L~~ir~~v--~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 80 DPPALAKAYEEGGAACLSVLTDTPSFQGAPE-F---LTAARQAC--SLPALRKDFLFDPYQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSTTTCCCHH-H---HHHHHHTS--SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS
T ss_pred CHHHHHHHHHHCCCCEEEEeccccccCCCHH-H---HHHHHHhc--CCCEEECCccCCHHHHHHHHHcCCCEEEEccccc
Confidence 556777777789998887632 11 1222 2 22333323 67787766 36678899999999999999
Q ss_pred CHHHHHHhcccCCCCccccC-eEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCCCcc-hhhhhhcC--CCCEEEEcC
Q 002437 170 PAIVARNTMKDSMSESVVLP-LVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKADVI-ENSLFTNV--KIPIFIMNA 243 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~-~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~-~~~~~~~~--~~Pv~aiGG 243 (921)
+....+.+... . ..+| .+=+.|||.+|+.+| ...|+|||++.+. +.-.+++. ...+++.+ ++||++.||
T Consensus 154 ~~~~l~~l~~~---a-~~lGl~~lvevh~~eEl~~A-~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesG 228 (272)
T 3tsm_A 154 DDDLAKELEDT---A-FALGMDALIEVHDEAEMERA-LKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESG 228 (272)
T ss_dssp CHHHHHHHHHH---H-HHTTCEEEEEECSHHHHHHH-TTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESS
T ss_pred CHHHHHHHHHH---H-HHcCCeEEEEeCCHHHHHHH-HhcCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECC
Confidence 86665555320 0 1001 234578999999999 8999999999987 22233443 35566555 589999999
Q ss_pred C-CccChHHHHHcCCcEEEEeecccccchH
Q 002437 244 S-PLVDVSKFLKSGASGFVISLEDLSLFND 272 (921)
Q Consensus 244 i-~~~~~~~~~~~Ga~gva~~~a~~~~~~~ 272 (921)
| +++++..+.++||+||.|..|.|+.-.+
T Consensus 229 I~t~edv~~l~~~Ga~gvLVG~almr~~d~ 258 (272)
T 3tsm_A 229 IFTHEDCLRLEKSGIGTFLIGESLMRQHDV 258 (272)
T ss_dssp CCSHHHHHHHHTTTCCEEEECHHHHTSSCH
T ss_pred CCCHHHHHHHHHcCCCEEEEcHHHcCCcCH
Confidence 9 8999999999999999999999886443
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-08 Score=107.02 Aligned_cols=149 Identities=16% Similarity=0.107 Sum_probs=108.0
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ec---CcHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IA---ERVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vn---d~~dla~~~~a~GvH 163 (921)
...+.++++.++|+..++++. . +.++.+++.+ +.+++ ++ ++++.+.+.|||+||
T Consensus 37 ~~~~~a~~~~~~G~~~i~~~~----~----~~i~~i~~~~--~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~ 106 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRANS----V----RDIKEIQAIT--DLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIA 106 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEEES----H----HHHHHHHTTC--CSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEE
T ss_pred hHHHHHHHHHHCCCcEeecCC----H----HHHHHHHHhC--CCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEE
Confidence 566788888899999999962 1 2344444443 34443 33 356677889999999
Q ss_pred cCCCCC--C--------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEE--EeCCC---CCCCCC--cc
Q 002437 164 LSDQGL--P--------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFL--VCCFG---EGQKAD--VI 226 (921)
Q Consensus 164 L~~~~l--~--------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv--~~gpv---Tk~~~g--~~ 226 (921)
++.... | ...+|... |+ . .++.++|+.+++..| ...|+||+ .+.++ ++...+ +.
T Consensus 107 l~~~~~~~~~~~~~~~~i~~i~~~~----~~-~---~v~~~~~t~~ea~~a-~~~Gad~i~~~v~g~~~~~~~~~~~~~~ 177 (234)
T 1yxy_A 107 MDCTKRDRHDGLDIASFIRQVKEKY----PN-Q---LLMADISTFDEGLVA-HQAGIDFVGTTLSGYTPYSRQEAGPDVA 177 (234)
T ss_dssp EECCSSCCTTCCCHHHHHHHHHHHC----TT-C---EEEEECSSHHHHHHH-HHTTCSEEECTTTTSSTTSCCSSSCCHH
T ss_pred EcccccCCCCCccHHHHHHHHHHhC----CC-C---eEEEeCCCHHHHHHH-HHcCCCEEeeeccccCCCCcCCCCCCHH
Confidence 976532 1 33445544 34 2 588899999999999 89999999 56655 332223 33
Q ss_pred -hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 227 -ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 227 -~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
..++++. ++||+|.|||+ ++|+.++.++||++|++.++.++
T Consensus 178 ~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 178 LIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 220 (234)
T ss_dssp HHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred HHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 4667766 89999999998 99999999999999999888766
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-10 Score=119.03 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=96.0
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHHHHHHH-Hhhc----CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCC
Q 002437 110 AKFVGIVVLNGGEASGKSVYEAACLLKS-VVKD----RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSE 184 (921)
Q Consensus 110 ~~g~~~vqlR~k~~~~~~~~~~a~~l~~-~~~~----~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~ 184 (921)
..++.++.-|.-.-.-+.+...|-.+-- ..|+ ++.+|.|+|+++| +|+ +.++..+|+..+ +.
T Consensus 130 ~~~~~i~~TRKt~Pglr~~~kyAv~~GGg~nHR~~L~d~~LIkdnHi~~a-----ggi-----~~av~~ar~~~~---~~ 196 (286)
T 1x1o_A 130 GTKAQILDTRKTTPGLRALEKYAVRVGGGRNHRYGLFDGILLKENHVRAA-----GGV-----GEAVRRAKARAP---HY 196 (286)
T ss_dssp TSSCEEECCSCCCTTCHHHHHHHHHHHTCBCCCSSSSSCEEECHHHHHHH-----TSH-----HHHHHHHHHHSC---TT
T ss_pred CCCcEEEEcCCCChhhHHHHHHHHHhCCCcccccccccceEEECCHHHHh-----CCH-----HHHHHHHHHhCC---CC
Confidence 4468889998644444444444444332 1222 2678999999877 354 446788899875 44
Q ss_pred ccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEEE
Q 002437 185 SVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 185 ~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva~ 262 (921)
+ .||+||||++|+.+| ...|+|||.++|++.. . .+++.+.. ++|++|+|||+++|+.++.++|+++|++
T Consensus 197 -~---~IgVev~t~eea~eA-~~aGaD~I~ld~~~~~--~--~k~av~~v~~~ipi~AsGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 197 -L---KVEVEVRSLEELEEA-LEAGADLILLDNFPLE--A--LREAVRRVGGRVPLEASGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp -S---CEEEEESSHHHHHHH-HHHTCSEEEEESCCHH--H--HHHHHHHHTTSSCEEEESSCCHHHHHHHHHHTCSEEEC
T ss_pred -C---EEEEEeCCHHHHHHH-HHcCCCEEEECCCCHH--H--HHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEEEE
Confidence 3 699999999999999 8999999999998211 1 12233222 6999999999999999999999999987
Q ss_pred ee
Q 002437 263 SL 264 (921)
Q Consensus 263 ~~ 264 (921)
.+
T Consensus 268 gs 269 (286)
T 1x1o_A 268 GA 269 (286)
T ss_dssp TH
T ss_pred cH
Confidence 43
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=130.44 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=93.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcc----cccE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPIL----KEMI 438 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l----~~l~ 438 (921)
+..+|+|+|+..+|||||..+|+-..-............ .+.+....+.+|........+.+.|..... ..++
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~---~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGA---ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCC---ccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 457899999999999999999973210000000000000 112222223444444444444444442211 1389
Q ss_pred EEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 439 IVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 439 lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||||||.-++..+ +...++-+|.+|+|+|+..+...+...+|+++.+.+.|.++|+||+|.... ++..+.+.++
T Consensus 89 lIDTPGHvDF~~E----v~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a--~~~~~~~ei~ 162 (709)
T 4fn5_A 89 VIDTPGHVDFTIE----VERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA--NFLRVVEQIK 162 (709)
T ss_dssp EECCCSCTTCHHH----HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC--CHHHHHHHHH
T ss_pred EEeCCCCcccHHH----HHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc--cHHHHHHHhh
Confidence 9999998655443 556677899999999999999999999999999999999999999998754 4555566555
Q ss_pred HHH
Q 002437 519 ENT 521 (921)
Q Consensus 519 ~~~ 521 (921)
..+
T Consensus 163 ~~l 165 (709)
T 4fn5_A 163 KRL 165 (709)
T ss_dssp HHH
T ss_pred hhc
Confidence 543
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=118.20 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCHHHH-------HHHHHHHHHHhhc-CceEEec------CcHHHHHhCCCCeEEcCCC
Q 002437 102 LDLIDEAVAKFVGIVVLNGGEASGKSV-------YEAACLLKSVVKD-RALFLIA------ERVDIAAAVNASGVLLSDQ 167 (921)
Q Consensus 102 ~~~~~~~l~~g~~~vqlR~k~~~~~~~-------~~~a~~l~~~~~~-~~~~ivn------d~~dla~~~~a~GvHL~~~ 167 (921)
.+.++.+.++|++.||+|++ .+.... ......+..+++. +.+++++ +.++.+.+.|||+||....
T Consensus 31 ~~~a~~~~~~Ga~~i~~~e~-v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~~~~~~~aGad~v~~~~~ 109 (297)
T 2zbt_A 31 PEQAVIAEEAGAVAVMALER-VPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEV 109 (297)
T ss_dssp HHHHHHHHHHTCSEEEECSS-CHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCcEEEeccc-cchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHCCCCEEeeeCC
Confidence 47788888999999999984 322111 1123456667766 7888875 5678888999999976543
Q ss_pred CCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEE------eCCC----CC-----------------
Q 002437 168 GLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLV------CCFG----EG----------------- 220 (921)
Q Consensus 168 ~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~------~gpv----Tk----------------- 220 (921)
.-+....+.+.... .+ . .+.+.||+++++..| .+.|+|||. +||+ ++
T Consensus 110 ~~~~~~~~~~~~~~-~~-i---~l~~~v~~~~~~~~a-~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~ 183 (297)
T 2zbt_A 110 LTPADEEHHIDKWK-FK-V---PFVCGARNLGEALRR-IAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLRED 183 (297)
T ss_dssp SCCSCSSCCCCGGG-CS-S---CEEEEESSHHHHHHH-HHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred CChHHHHHHHHHhC-CC-c---eEEeecCCHHHHHHH-HHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCC
Confidence 21111122221100 12 1 345568999999999 899999994 4444 11
Q ss_pred --------CCCCcc-hhhhhhcCCCCEE--EEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 221 --------QKADVI-ENSLFTNVKIPIF--IMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 221 --------~~~g~~-~~~~~~~~~~Pv~--aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++++. ..++++..++||+ +.||| +++|+.++.++||+||++.++.++.
T Consensus 184 ~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~ 244 (297)
T 2zbt_A 184 ELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS 244 (297)
T ss_dssp GHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS
T ss_pred CchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence 112222 3667777789998 99999 9999999999999999999988753
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-09 Score=112.98 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=77.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeE-EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EIT-FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
.++|+++|++|+|||||+|.|+|....|....+... .++ ..... .-.+.... ......++++|
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~--------------~~~~~~q~-~~~~~~ltv~D 82 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIE--------------ASTVEIEE-RGVKLRLTVVD 82 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC--------------------------------------CEEEEC----CCEEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEe--------------eEEEEecC-CCcccCcchhh
Confidence 589999999999999999999997544432211000 000 00000 00000000 00112589999
Q ss_pred CCCCChhh---hHHHHHHH-------Hhc-------------CCCCEEEEEEeCCC-CCCHHHHHHHHHhhhcCCeEEEE
Q 002437 442 TPGTNVIL---QRQQRLTE-------EFV-------------PRADLVLFVISADR-PLTESEVVFLRYTQQWKKKVVFV 497 (921)
Q Consensus 442 TPG~~~~~---~~~~~~~~-------~~l-------------~~aD~il~V~da~~-~~t~~e~~~l~~l~~~~~~vivV 497 (921)
|||++... +....++. .++ .+++++||+.+... .+...+.++++.+.. ..++++|
T Consensus 83 t~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV 161 (301)
T 2qnr_A 83 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPV 161 (301)
T ss_dssp EC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEE
T ss_pred hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEE
Confidence 99983211 01111111 222 23566777777543 477777777777753 5699999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 498 LNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 498 lNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+||.|+... .++....+.+.+.+... ..++|.+||+.+
T Consensus 162 ~~K~Dl~~~-~e~~~~~~~~~~~~~~~----~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 162 IAKADTLTL-KERERLKKRILDEIEEH----NIKIYHLPDAES 199 (301)
T ss_dssp ECCGGGSCH-HHHHHHHHHHHHHHHHT----TCCCCCCC----
T ss_pred EEeCCCCCH-HHHHHHHHHHHHHHHHc----CCeEEecCCccc
Confidence 999999843 33333334444433332 468999999875
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-08 Score=107.30 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=84.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCC--CcccccEEEeC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPS--PILKEMIIVDT 442 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~l~~l~lvDT 442 (921)
|+++++|+.|+|||||+|+|+|......|. +..-. ...... .....+.+.+. .+...++++|+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~------i~~~g-~~i~~~--------~~~~~i~~v~q~~~~~~~ltv~d~ 67 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKAS------SWNRE-EKIPKT--------VEIKAIGHVIEEGGVKMKLTVIDT 67 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------------CCCC--------CSCCEEEESCC----CCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCc------cccCC-cccCcc--------eeeeeeEEEeecCCCcCCceEEec
Confidence 789999999999999999999864322211 00000 000000 00001111111 11235899999
Q ss_pred CCCChhh------hHHH--------HHHHHh----------cCCCCEEEEEEeCC-CCCCHHHHHHHHHhhhcCCeEEEE
Q 002437 443 PGTNVIL------QRQQ--------RLTEEF----------VPRADLVLFVISAD-RPLTESEVVFLRYTQQWKKKVVFV 497 (921)
Q Consensus 443 PG~~~~~------~~~~--------~~~~~~----------l~~aD~il~V~da~-~~~t~~e~~~l~~l~~~~~~vivV 497 (921)
||++... .... ...... +.++++.+|++|.. +++...+.++++.+... .++++|
T Consensus 68 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~V 146 (270)
T 3sop_A 68 PGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPV 146 (270)
T ss_dssp CC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEE
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEE
Confidence 9985310 0111 111111 23578999999954 78899999999999887 999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHh
Q 002437 498 LNKSDLYQNAFELEEAISFVKENTMKL 524 (921)
Q Consensus 498 lNK~D~~~~~~~~~~v~~~~~~~~~~~ 524 (921)
+||+|... .+++...+..+++.+...
T Consensus 147 i~K~D~lt-~~e~~~~k~~i~~~l~~~ 172 (270)
T 3sop_A 147 IAKADTMT-LEEKSEFKQRVRKELEVN 172 (270)
T ss_dssp ETTGGGSC-HHHHHHHHHHHHHHHHHT
T ss_pred EeccccCC-HHHHHHHHHHHHHHHHHc
Confidence 99999985 456666666666665543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-07 Score=106.00 Aligned_cols=174 Identities=23% Similarity=0.273 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
....++++|++|||||||+|+|+|......+.. +...... .+ .+ ++.. .+...+++++|+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI-~~~g~~~-----------t~-----~~-~v~q--~~~~~~ltv~D~ 127 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA-KTGVVEV-----------TM-----ER-HPYK--HPNIPNVVFWDL 127 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSC-CCCC---------------C-----CC-EEEE--CSSCTTEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceE-EECCeec-----------ce-----eE-Eecc--ccccCCeeehHh
Confidence 567899999999999999999999542211111 0000000 00 01 1111 112246899999
Q ss_pred CCCChhhhHHHHHHHHh-cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC--------hHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEF-VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN--------AFELEEA 513 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~-l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~--------~~~~~~v 513 (921)
||++.......+....+ +...|.+++ ++... ...+...+...+...++|+++|+||.|..-- ....+++
T Consensus 128 ~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l 205 (413)
T 1tq4_A 128 PGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKV 205 (413)
T ss_dssp CCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHH
T ss_pred hcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHH
Confidence 99863322222333222 345576666 77765 5677888888888889999999999886410 1123344
Q ss_pred HHHHHHHHHH---hhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 514 ISFVKENTMK---LLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 514 ~~~~~~~~~~---~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.+++...+ ..+.....++++|+... ...|+++|.+.+.+.+.+
T Consensus 206 ~~~l~~l~~~~l~~~g~~~~~iiliSsh~l-------------------------~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 206 LQDIRLNCVNTFRENGIAEPPIFLLSNKNV-------------------------CHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEECCTTCT-------------------------TSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEecCcC-------------------------CccCHHHHHHHHHHhCcc
Confidence 4444443321 11223467899999542 124799999999988864
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-08 Score=103.02 Aligned_cols=171 Identities=17% Similarity=0.111 Sum_probs=105.9
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE----ecC----cHHHHHhCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL----IAE----RVDIAAAVN 158 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i----vnd----~~dla~~~~ 158 (921)
+|++-.|.. ..++.++.++++.. |++++.+-.+.. -..=.+..+.+++.+. +.+++ ++| .++.|.++|
T Consensus 2 ~li~a~d~~-~~~~~~~~~~~~~~-~v~~iev~~~~~-~~~g~~~i~~l~~~~~-~~~i~~~l~~~di~~~~~~~a~~~G 77 (207)
T 3ajx_A 2 KLQVAIDLL-STEAALELAGKVAE-YVDIIELGTPLI-KAEGLSVITAVKKAHP-DKIVFADMKTMDAGELEADIAFKAG 77 (207)
T ss_dssp EEEEEECCS-CHHHHHHHHHHHGG-GCSEEEECHHHH-HHHCTHHHHHHHHHST-TSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred eEEEEeCCC-CHHHHHHHHHHhhc-cCCEEEECcHHH-HhhCHHHHHHHHHhCC-CCeEEEEEEecCccHHHHHHHHhCC
Confidence 344544532 22355666766655 899999833210 0111223445555431 33444 344 378899999
Q ss_pred CCeE--EcCCCCCCHHHHHHhcccCCCCccccCeEEEecC---CHHH-HHcccccCCCCEEEeCCC-CCCCCCc----c-
Q 002437 159 ASGV--LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQ---TLDA-AFNASSSEGADFLVCCFG-EGQKADV----I- 226 (921)
Q Consensus 159 a~Gv--HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h---~~~e-~~~A~~~~gaDyv~~gpv-Tk~~~g~----~- 226 (921)
|||| |....+.+...+++... +.+. .+|+++| |+.+ +..+ ...|+||+.+.|. +....|. .
T Consensus 78 ad~v~vh~~~~~~~~~~~~~~~~---~~g~---~~gv~~~s~~~p~~~~~~~-~~~g~d~v~~~~~~~~~~~g~~~~~~~ 150 (207)
T 3ajx_A 78 ADLVTVLGSADDSTIAGAVKAAQ---AHNK---GVVVDLIGIEDKATRAQEV-RALGAKFVEMHAGLDEQAKPGFDLNGL 150 (207)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHH---HHTC---EEEEECTTCSSHHHHHHHH-HHTTCSEEEEECCHHHHTSTTCCTHHH
T ss_pred CCEEEEeccCChHHHHHHHHHHH---HcCC---ceEEEEecCCChHHHHHHH-HHhCCCEEEEEecccccccCCCchHHH
Confidence 9999 66655444545555442 1112 3688887 6666 5555 5679999977765 2111222 2
Q ss_pred hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++++.. ++|+++.|||+++|+.++.++||++|++.++..+.
T Consensus 151 i~~~~~~-~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI~~~ 192 (207)
T 3ajx_A 151 LAAGEKA-RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGA 192 (207)
T ss_dssp HHHHHHH-TSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred HHHhhCC-CCCEEEECCcCHHHHHHHHHcCCCEEEEeeeccCC
Confidence 3344333 79999999999999999999999999998887764
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=108.52 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCcEEE----EeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHHh
Q 002437 103 DLIDEAVAKFVGIVV----LNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARNT 177 (921)
Q Consensus 103 ~~~~~~l~~g~~~vq----lR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~~ 177 (921)
..++.+++.|+++|+ +| ++.+..+.++.+.++.+.|++ |.+++++ +.++|+|+++++.| +
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~-~d~~~~~~~~~i~~v~~~~~~~G~p~lv~--------~~~~g~~v~~~~~~-----~- 176 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWR-SDEDAQQRLNMVKEFNELCHSNGLLSIIE--------PVVRPPRCGDKFDR-----E- 176 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEEC-TTSCHHHHHHHHHHHHHHHHTTTCEEEEE--------EEECCCSSCSCCCH-----H-
T ss_pred hhHHHHHHcCCCEEEEEEEcC-CCccHHHHHHHHHHHHHHHHHcCCcEEEE--------EECCCCccccCCCh-----h-
Confidence 558899999999999 88 666678899999999999999 9999998 56778999876543 0
Q ss_pred cccCCCCccccCeEEEecCCHHH-HHcccccCCCCEEEeCCC-CCCCCCcc-hhhhhhc----CCCC-EEEEcCCCccC-
Q 002437 178 MKDSMSESVVLPLVGRNVQTLDA-AFNASSSEGADFLVCCFG-EGQKADVI-ENSLFTN----VKIP-IFIMNASPLVD- 248 (921)
Q Consensus 178 ~~~~~~~~~~~~~ig~S~h~~~e-~~~A~~~~gaDyv~~gpv-Tk~~~g~~-~~~~~~~----~~~P-v~aiGGi~~~~- 248 (921)
|...+ +..| .+.|+||+.++|. .... +.+ ..++++. +++| |+++||+++++
T Consensus 177 ------------------~~v~~aa~~a-~~lGaD~iKv~~~~~~~g-~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~ 236 (304)
T 1to3_A 177 ------------------QAIIDAAKEL-GDSGADLYKVEMPLYGKG-ARSDLLTASQRLNGHINMPWVILSSGVDEKLF 236 (304)
T ss_dssp ------------------HHHHHHHHHH-TTSSCSEEEECCGGGGCS-CHHHHHHHHHHHHHTCCSCEEECCTTSCTTTH
T ss_pred ------------------HHHHHHHHHH-HHcCCCEEEeCCCcCCCC-CHHHHHHHHHhccccCCCCeEEEecCCCHHHH
Confidence 22333 5666 6899999999984 2111 333 3455555 8999 99999998854
Q ss_pred ---hHHHHHcCCcEEEEeeccccc
Q 002437 249 ---VSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 249 ---~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+..+.++|+.||++.++....
T Consensus 237 ~~~~~~a~~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 237 PRAVRVAMEAGASGFLAGRAVWSS 260 (304)
T ss_dssp HHHHHHHHHTTCCEEEESHHHHGG
T ss_pred HHHHHHHHHcCCeEEEEehHHhCc
Confidence 889999999999888877644
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=103.98 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=112.2
Q ss_pred HHHHHHHh-cCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEe-----cCcHHHHHhCCCCeEEcCCCCCCHHHH
Q 002437 103 DLIDEAVA-KFVGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLI-----AERVDIAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 103 ~~~~~~l~-~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~iv-----nd~~dla~~~~a~GvHL~~~~l~~~~~ 174 (921)
+.+..+.. +|+.++.. ...+.+++.+.++++++.+.. ++.+++ .+..+++.+.|+|.||++..+ |....
T Consensus 41 ~la~av~~aGglG~i~~--~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g~-p~~~~ 117 (326)
T 3bo9_A 41 TLAAAVSEAGGLGIIGS--GAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGN-PTKYI 117 (326)
T ss_dssp HHHHHHHHTTSBEEEEC--TTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESSC-CHHHH
T ss_pred HHHHHHHhCCCcEEeCC--CCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCCC-cHHHH
Confidence 33444444 45677764 456788888888888887743 666666 356778888999999997764 65555
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCC----CCCCCCcc-hhhhhhcCCCCEEEEcCCC-cc
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFG----EGQKADVI-ENSLFTNVKIPIFIMNASP-LV 247 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpv----Tk~~~g~~-~~~~~~~~~~Pv~aiGGi~-~~ 247 (921)
+.+.. .. . .+..++++.+++..| .+.|+||+++ |+. +...+.+. ..++++..++||++.|||+ ++
T Consensus 118 ~~l~~---~g-~---~v~~~v~s~~~a~~a-~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~ 189 (326)
T 3bo9_A 118 RELKE---NG-T---KVIPVVASDSLARMV-ERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGR 189 (326)
T ss_dssp HHHHH---TT-C---EEEEEESSHHHHHHH-HHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHH
T ss_pred HHHHH---cC-C---cEEEEcCCHHHHHHH-HHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 55532 22 1 466788999999999 8999999999 543 11112222 3667777799999999997 99
Q ss_pred ChHHHHHcCCcEEEEeecccc
Q 002437 248 DVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|+.++++.||+||.+.++.+.
T Consensus 190 dv~~al~~GA~gV~vGs~~~~ 210 (326)
T 3bo9_A 190 GMAAAFALGAEAVQMGTRFVA 210 (326)
T ss_dssp HHHHHHHHTCSEEEESHHHHT
T ss_pred HHHHHHHhCCCEEEechHHHc
Confidence 999999999999998766554
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.1e-08 Score=106.35 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=112.1
Q ss_pred HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEe-----cCcHHHHHhCCCCeEEcCCCCCCHHHH
Q 002437 103 DLIDEAVAKF-VGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLI-----AERVDIAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 103 ~~~~~~l~~g-~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~iv-----nd~~dla~~~~a~GvHL~~~~l~~~~~ 174 (921)
+.+..+.++| +.++..+ ..+.+.+.+.++++++++.. ++.+++ ++..+++.+.|+|+|+++.. .|....
T Consensus 27 ~la~av~~aG~lG~i~~~--~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~g-~p~~~i 103 (332)
T 2z6i_A 27 DLAGAVSKAGGLGIIGGG--NAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAG-NPSKYM 103 (332)
T ss_dssp HHHHHHHHHTSBEEEECT--TCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSS-CGGGTH
T ss_pred HHHHHHHhCCCcEEeCCC--CCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECCC-ChHHHH
Confidence 3344444444 6888764 46778888888888888743 677777 24577888999999999875 354444
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCCCCCCCC----cc-hhhhhhcCCCCEEEEcCCC-cc
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFGEGQKAD----VI-ENSLFTNVKIPIFIMNASP-LV 247 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpvTk~~~g----~~-~~~~~~~~~~Pv~aiGGi~-~~ 247 (921)
+.+.. .+ . .++.++++.+++..+ .+.|+||+.+ |+-+..+.| +. ..++++..++||++.|||+ ++
T Consensus 104 ~~l~~---~g-~---~v~~~v~~~~~a~~~-~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~ 175 (332)
T 2z6i_A 104 ERFHE---AG-I---IVIPVVPSVALAKRM-EKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGE 175 (332)
T ss_dssp HHHHH---TT-C---EEEEEESSHHHHHHH-HHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHH
T ss_pred HHHHH---cC-C---eEEEEeCCHHHHHHH-HHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 44432 22 1 466788999999999 8999999999 442222222 22 3667777899999999997 99
Q ss_pred ChHHHHHcCCcEEEEeecccc
Q 002437 248 DVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~~~ 268 (921)
++.++++.||+||.+.++.+.
T Consensus 176 ~~~~al~~GAdgV~vGs~~l~ 196 (332)
T 2z6i_A 176 GAAAGFMLGAEAVQVGTRFVV 196 (332)
T ss_dssp HHHHHHHTTCSEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEecHHHhc
Confidence 999999999999998776654
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-08 Score=100.79 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=60.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh-HHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA-FELEEAI 514 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~-~~~~~v~ 514 (921)
++.++||||.-... ..+-...+.++.|+|+........ .... ....|+++|+||+|+.... ...+++.
T Consensus 120 d~~~id~~g~i~~~-------~s~~~~~~~~~~v~~~~~~~~~~~-~~~~---~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 188 (226)
T 2hf9_A 120 DLLFIENVGNLICP-------ADFDLGTHKRIVVISTTEGDDTIE-KHPG---IMKTADLIVINKIDLADAVGADIKKME 188 (226)
T ss_dssp SEEEEECCSCSSGG-------GGCCCSCSEEEEEEEGGGCTTTTT-TCHH---HHTTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCccCc-------chhhhccCcEEEEEecCcchhhHh-hhhh---HhhcCCEEEEeccccCchhHHHHHHHH
Confidence 68999999952111 112234577788888532211000 0011 1357899999999986321 1233333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+. .+ + ...+++++||+++ .|++++.+.+.+.+.
T Consensus 189 ~~~~----~~-~-~~~~~~~~Sa~~g---------------------------~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 189 NDAK----RI-N-PDAEVVLLSLKTM---------------------------EGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHH----HH-C-TTSEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HHHH----Hh-C-CCCeEEEEEecCC---------------------------CCHHHHHHHHHHHHH
Confidence 3332 22 1 2468999999987 688888888776553
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=95.68 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=100.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ecC---cHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IAE---RVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vnd---~~dla~~~~a~GvH 163 (921)
...+....+.++|+..+-.- +. +..+++++.+ +.++| |.. +++.+.+.|+|.|.
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~~----~~----~~i~~ir~~v--~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~ 106 (232)
T 3igs_A 37 IVAAMALAAEQAGAVAVRIE----GI----DNLRMTRSLV--SVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIA 106 (232)
T ss_dssp HHHHHHHHHHHTTCSEEEEE----SH----HHHHHHHTTC--CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEE
T ss_pred hHHHHHHHHHHCCCeEEEEC----CH----HHHHHHHHhc--CCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEE
Confidence 44455566668898877651 21 2334444333 34433 332 35677889999999
Q ss_pred cCCCCC--C--H-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C---CC-CCCcc-hhhhh
Q 002437 164 LSDQGL--P--A-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E---GQ-KADVI-ENSLF 231 (921)
Q Consensus 164 L~~~~l--~--~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T---k~-~~g~~-~~~~~ 231 (921)
|..... | . ...+.... .+ . .++++||+.+++.+| .+.|+|||+++.. | +. .+++. ..+++
T Consensus 107 l~~~~~~~p~~l~~~i~~~~~---~g-~---~v~~~v~t~eea~~a-~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~ 178 (232)
T 3igs_A 107 VDGTARQRPVAVEALLARIHH---HH-L---LTMADCSSVDDGLAC-QRLGADIIGTTMSGYTTPDTPEEPDLPLVKALH 178 (232)
T ss_dssp EECCSSCCSSCHHHHHHHHHH---TT-C---EEEEECCSHHHHHHH-HHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHH---CC-C---EEEEeCCCHHHHHHH-HhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHH
Confidence 865432 2 1 12222211 12 2 688899999999999 8999999986543 2 22 23343 46677
Q ss_pred hcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 232 TNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 232 ~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+. ++||+|.||| +++|+..++++||+||.|..+.++
T Consensus 179 ~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 179 DA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp HT-TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred hc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 66 9999999999 599999999999999999888876
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=96.13 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=101.3
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceE-------------EecC---cHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALF-------------LIAE---RVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~-------------ivnd---~~dla~~~~a~GvH 163 (921)
...+....+.++|+..+-.- +. +..+++++.+ +.++ +|.. +++.+.+.|+|.|.
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~~----~~----~~i~~ir~~v--~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~ 106 (229)
T 3q58_A 37 IVAAMAQAAASAGAVAVRIE----GI----ENLRTVRPHL--SVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIA 106 (229)
T ss_dssp HHHHHHHHHHHTTCSEEEEE----SH----HHHHHHGGGC--CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEE
T ss_pred hHHHHHHHHHHCCCcEEEEC----CH----HHHHHHHHhc--CCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEE
Confidence 34455556668898887651 22 2233444333 3343 3333 35677888999999
Q ss_pred cCCCCC--C--H-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C---CC-CCCcc-hhhhh
Q 002437 164 LSDQGL--P--A-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E---GQ-KADVI-ENSLF 231 (921)
Q Consensus 164 L~~~~l--~--~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T---k~-~~g~~-~~~~~ 231 (921)
|..... | . ...+.... .+ . .+.++||+.+++.+| .+.|+|||+++.. | +. .+++. ..+++
T Consensus 107 l~~~~~~~p~~l~~~i~~~~~---~g-~---~v~~~v~t~eea~~a-~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~ 178 (229)
T 3q58_A 107 FDASFRSRPVDIDSLLTRIRL---HG-L---LAMADCSTVNEGISC-HQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLS 178 (229)
T ss_dssp EECCSSCCSSCHHHHHHHHHH---TT-C---EEEEECSSHHHHHHH-HHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHH
T ss_pred ECccccCChHHHHHHHHHHHH---CC-C---EEEEecCCHHHHHHH-HhCCCCEEEecCccCCCCCcCCCCCHHHHHHHH
Confidence 865432 1 1 12222211 12 2 688899999999999 8999999986543 3 21 23444 46677
Q ss_pred hcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 232 TNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 232 ~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. ++||+|.||| +++++.+++++||+||.|.++.++.
T Consensus 179 ~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~p 216 (229)
T 3q58_A 179 HA-GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRI 216 (229)
T ss_dssp TT-TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHCH
T ss_pred Hc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcCh
Confidence 66 9999999999 5999999999999999998888763
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-07 Score=100.66 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=111.4
Q ss_pred HHHHHHHh-cCCcEEEEeCCCCC-HHHHHHHHHHHHHHhhc--CceEEec---------CcHHHHHhCCCCeEEcCCCCC
Q 002437 103 DLIDEAVA-KFVGIVVLNGGEAS-GKSVYEAACLLKSVVKD--RALFLIA---------ERVDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 103 ~~~~~~l~-~g~~~vqlR~k~~~-~~~~~~~a~~l~~~~~~--~~~~ivn---------d~~dla~~~~a~GvHL~~~~l 169 (921)
+.+..+.. +|+.++.. ...+ .+++.+.++++++.+.. ++.+++| +.++++.+.|+|+||++...
T Consensus 30 ~la~av~~aGglG~i~~--~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~- 106 (328)
T 2gjl_A 30 EMAAAVANAGGLATLSA--LTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND- 106 (328)
T ss_dssp HHHHHHHHTTSBCEEET--TTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC-
T ss_pred HHHHHHHHCCCeEEeCC--CCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC-
Confidence 34444444 45677754 3344 77788888888888753 7888998 46778889999999997653
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCCCCCCCC------cc-hhhhhhcCCCCEEEE
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFGEGQKAD------VI-ENSLFTNVKIPIFIM 241 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpvTk~~~g------~~-~~~~~~~~~~Pv~ai 241 (921)
|....+.+.. .+ . .+..++++.+++..+ ...|+||+++ |+....|.| .. ..++++..++||++.
T Consensus 107 p~~~~~~l~~---~g-i---~vi~~v~t~~~a~~~-~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaa 178 (328)
T 2gjl_A 107 PGEHIAEFRR---HG-V---KVIHKCTAVRHALKA-ERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIAS 178 (328)
T ss_dssp CHHHHHHHHH---TT-C---EEEEEESSHHHHHHH-HHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEE
T ss_pred cHHHHHHHHH---cC-C---CEEeeCCCHHHHHHH-HHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEE
Confidence 5555555432 22 1 355788999999999 8999999999 433111212 22 366777789999999
Q ss_pred cCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 242 NAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 242 GGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
||| +++|+.++++.||+||.+.++.+.
T Consensus 179 GGI~~~~~v~~al~~GAdgV~vGs~~~~ 206 (328)
T 2gjl_A 179 GGFADGRGLVAALALGADAINMGTRFLA 206 (328)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHHc
Confidence 999 689999999999999998776554
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.1e-08 Score=102.19 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=109.0
Q ss_pred HHHHHHHhcCCcEEEEeCC-----CCCHHHHHHHHHH-----HHHHhhc-CceEEec--------CcHHHHHhCCCCeEE
Q 002437 103 DLIDEAVAKFVGIVVLNGG-----EASGKSVYEAACL-----LKSVVKD-RALFLIA--------ERVDIAAAVNASGVL 163 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k-----~~~~~~~~~~a~~-----l~~~~~~-~~~~ivn--------d~~dla~~~~a~GvH 163 (921)
+-+.+|.++|++.|+|.++ ..+.....+.+++ +..+++. +.-|+.| ++++++.++||||||
T Consensus 50 ~~a~~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvV 129 (287)
T 3iwp_A 50 ESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLV 129 (287)
T ss_dssp HHHHHHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 6677889999999999986 2344455656655 4444566 6677777 688999999999999
Q ss_pred cCC--C--CCCHHHHHHhcccCCCCccccCeEEEecCCH--------HHHHcccccCCCCEEEeCCC-CCCCCCcc-hhh
Q 002437 164 LSD--Q--GLPAIVARNTMKDSMSESVVLPLVGRNVQTL--------DAAFNASSSEGADFLVCCFG-EGQKADVI-ENS 229 (921)
Q Consensus 164 L~~--~--~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~--------~e~~~A~~~~gaDyv~~gpv-Tk~~~g~~-~~~ 229 (921)
||. . .++....++++. .. +.+++++|-. +.+... ...|+|.|+-|.- .....|+. +++
T Consensus 130 fG~L~~dg~iD~~~~~~Li~---~a----~~l~vTFHRAFD~~~d~~~Ale~L-i~lGvdrILTSG~~~~a~~Gl~~Lk~ 201 (287)
T 3iwp_A 130 FGALTEDGHIDKELCMSLMA---IC----RPLPVTFHRAFDMVHDPMAALETL-LTLGFERVLTSGCDSSALEGLPLIKR 201 (287)
T ss_dssp ECCBCTTSCBCHHHHHHHHH---HH----TTSCEEECGGGGGCSCHHHHHHHH-HHHTCSEEEECTTSSSTTTTHHHHHH
T ss_pred EeeeCCCCCcCHHHHHHHHH---Hc----CCCcEEEECchhccCCHHHHHHHH-HHcCCCEEECCCCCCChHHhHHHHHH
Confidence 994 3 377788888874 22 2368899965 223344 4568888887764 22245665 555
Q ss_pred hhhcC--CCCEEEEcCCCccChHHHHH-cCCcEEE
Q 002437 230 LFTNV--KIPIFIMNASPLVDVSKFLK-SGASGFV 261 (921)
Q Consensus 230 ~~~~~--~~Pv~aiGGi~~~~~~~~~~-~Ga~gva 261 (921)
+.+.. ++++.+.|||+++|+.++.+ +|++-+=
T Consensus 202 Lv~~a~~rI~ImaGGGV~~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 202 LIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFH 236 (287)
T ss_dssp HHHHHTTSSEEEECTTCCTTTHHHHHHHHCCSEEE
T ss_pred HHHHhCCCCEEEECCCcCHHHHHHHHHhhCCCEEe
Confidence 65543 59999999999999999887 9998884
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=102.84 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=64.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCC----------CCHHH-HHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRP----------LTESE-VVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~----------~t~~e-~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|. +.....+..++..+++||||+|.++. .+..+ ..++..+.. .+.|+|+|+||
T Consensus 202 ~l~i~Dt~Gq----~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK 277 (362)
T 1zcb_A 202 PFKMVDVGGQ----RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNK 277 (362)
T ss_dssp EEEEEEECC-----------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEEC
T ss_pred EEEEEeccch----hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEC
Confidence 4789999997 34456677888999999999999872 22222 345555543 35799999999
Q ss_pred CCCCCC-----------------hHHHHHHHHHHHHHHHHhhC---CCCCeEEEecccch
Q 002437 501 SDLYQN-----------------AFELEEAISFVKENTMKLLN---IENVTIYPVSARST 540 (921)
Q Consensus 501 ~D~~~~-----------------~~~~~~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~ 540 (921)
+|+... ....+++..++...+..+.. .....++++||+.+
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~ 337 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT 337 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc
Confidence 998521 12345666666555444322 23467899999987
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=107.44 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=71.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH------CCCCCCCCCCC---ccc----------eeEEEEccCC-ccchhhc--ccc-
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL------GKRYLKDGVVP---TTN----------EITFLRFSDL-ASEEQQR--CER- 419 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~~~~~~---tT~----------~~~~~~~~~~-~~~~~~~--~~~- 419 (921)
.+.+|+|+|.+|+||||++|.|. |.+++..+..+ .+. .+.++..... +...... ...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999 77655433221 100 0111111000 0000000 000
Q ss_pred cCCCeEEeecCCCcccccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EE
Q 002437 420 HPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VF 496 (921)
Q Consensus 420 ~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-iv 496 (921)
...+ .+++||||||..............+ +..+|.+++|+|+..+.. .......+.+. .|+ .+
T Consensus 180 ~~~~-----------~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gv 245 (504)
T 2j37_W 180 KNEN-----------FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASV 245 (504)
T ss_dssp HHTT-----------CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCE
T ss_pred HHCC-----------CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEE
Confidence 0011 3699999999864322211111111 127899999999987643 34444444443 564 89
Q ss_pred EEeCCCCCCC
Q 002437 497 VLNKSDLYQN 506 (921)
Q Consensus 497 VlNK~D~~~~ 506 (921)
|+||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.6e-08 Score=106.96 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=53.9
Q ss_pred hcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 359 ~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
.++...++|+++|.+|+|||||+|+|++.++.......||..+........+............... ....+.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~-------~~~~i~ 89 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASK-------IPAFLN 89 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEE-------ECCEEE
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccc-------cccccE
Confidence 3556778999999999999999999999877444445566544433222111000000000000000 002489
Q ss_pred EEeCCCCChhhhH---HHHHHHHhcCCCCEEEEEEeCCC
Q 002437 439 IVDTPGTNVILQR---QQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 439 lvDTPG~~~~~~~---~~~~~~~~l~~aD~il~V~da~~ 474 (921)
+|||||+...... .......+++.+|++++|+|+.+
T Consensus 90 lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 90 VVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred EEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 9999998532211 11235677899999999999864
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=98.78 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=104.2
Q ss_pred chHHHHHHHHhcCCcEEEEeCC----CCCHH-----------------HHHHHHHHHHHHhhcCceEEe--c--------
Q 002437 100 DALDLIDEAVAKFVGIVVLNGG----EASGK-----------------SVYEAACLLKSVVKDRALFLI--A-------- 148 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k----~~~~~-----------------~~~~~a~~l~~~~~~~~~~iv--n-------- 148 (921)
.+.+.++.+.++ ++++++=-| .++.. ...+.++++++.+.--+.++. |
T Consensus 20 ~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~ 98 (248)
T 1geq_A 20 STLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVR 98 (248)
T ss_dssp HHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHH
T ss_pred HHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHH
Confidence 566666666667 888888732 34322 234455555555422233443 4
Q ss_pred CcHHHHHhCCCCeEEcCCCCCCHHHHHHh------cccCCCCccccCeEEEecCCHHHHHcccccCCCC-EEEeCCC---
Q 002437 149 ERVDIAAAVNASGVLLSDQGLPAIVARNT------MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGAD-FLVCCFG--- 218 (921)
Q Consensus 149 d~~dla~~~~a~GvHL~~~~l~~~~~r~~------~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaD-yv~~gpv--- 218 (921)
+.++.+.+.|+||||++.. +....+.+ .| .. . +++.++++..+..++ ...++| |+.+.++
T Consensus 99 ~~~~~~~~~Gad~v~~~~~--~~~~~~~~~~~~~~~g---~~-~---~~~i~~~t~~e~~~~-~~~~~d~~i~~~~~~G~ 168 (248)
T 1geq_A 99 NFLAEAKASGVDGILVVDL--PVFHAKEFTEIAREEG---IK-T---VFLAAPNTPDERLKV-IDDMTTGFVYLVSLYGT 168 (248)
T ss_dssp HHHHHHHHHTCCEEEETTC--CGGGHHHHHHHHHHHT---CE-E---EEEECTTCCHHHHHH-HHHHCSSEEEEECCC--
T ss_pred HHHHHHHHCCCCEEEECCC--ChhhHHHHHHHHHHhC---CC-e---EEEECCCCHHHHHHH-HHhcCCCeEEEEECCcc
Confidence 3567788899999999743 33222222 33 33 2 678899888777666 566688 8866554
Q ss_pred CCC--CC---Ccc-hhhhhhcCCCCEEEEcCCCc-cChHHHHHcCCcEEEEeeccccc
Q 002437 219 EGQ--KA---DVI-ENSLFTNVKIPIFIMNASPL-VDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 219 Tk~--~~---g~~-~~~~~~~~~~Pv~aiGGi~~-~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
|.. +. .+. .+.+++..++||++.|||+. +|+.++.++||+||++.+|..+.
T Consensus 169 ~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~ 226 (248)
T 1geq_A 169 TGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKI 226 (248)
T ss_dssp -----CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred CCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhh
Confidence 222 11 122 36777777999999999998 99999999999999988887655
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=97.39 Aligned_cols=152 Identities=18% Similarity=0.116 Sum_probs=104.6
Q ss_pred HHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEe------cCcHHHHHhCCCCeEEcCCC-CCCH------H
Q 002437 106 DEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLI------AERVDIAAAVNASGVLLSDQ-GLPA------I 172 (921)
Q Consensus 106 ~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~iv------nd~~dla~~~~a~GvHL~~~-~l~~------~ 172 (921)
.-+.++|+.+++ ++.+.+++.+.++++++..+-++-+.+ .++.+.+.+.|+|.||+... ..+. .
T Consensus 65 avA~aGGlg~i~---~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~ 141 (366)
T 4fo4_A 65 ALAQEGGIGFIH---KNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIR 141 (366)
T ss_dssp HHHHTTCEEEEC---SSSCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHH
T ss_pred HHHHcCCceEee---cCCCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH
Confidence 334578888886 578888888888888776432333333 35778888899999998322 2221 1
Q ss_pred HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CC--CCCCcc----hhh---hhhcCCCC
Q 002437 173 VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EG--QKADVI----ENS---LFTNVKIP 237 (921)
Q Consensus 173 ~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk--~~~g~~----~~~---~~~~~~~P 237 (921)
..|... |+. .+++.+|++.++++.| .+.|||||.+| |- |. ...|.. ..+ .++..++|
T Consensus 142 ~ik~~~----p~v---~Vi~G~v~t~e~A~~a-~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iP 213 (366)
T 4fo4_A 142 ETRAAY----PHL---EIIGGNVATAEGARAL-IEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIP 213 (366)
T ss_dssp HHHHHC----TTC---EEEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCC
T ss_pred HHHHhc----CCC---ceEeeeeCCHHHHHHH-HHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCe
Confidence 234433 342 2456689999999999 89999999996 43 21 122322 223 33456899
Q ss_pred EEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 238 IFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 238 v~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|+|.||| ++.++.+++++||++|.+.++.+.
T Consensus 214 VIA~GGI~~~~di~kala~GAd~V~vGs~f~~ 245 (366)
T 4fo4_A 214 VIADGGIRFSGDISKAIAAGASCVMVGSMFAG 245 (366)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEChHhhc
Confidence 9999999 789999999999999988766544
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=97.43 Aligned_cols=150 Identities=19% Similarity=0.099 Sum_probs=105.2
Q ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc--CceEEec--CcHHHHHhCCCCeEEcCCCCC-CH------HHHH
Q 002437 107 EAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD--RALFLIA--ERVDIAAAVNASGVLLSDQGL-PA------IVAR 175 (921)
Q Consensus 107 ~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~--~~~~ivn--d~~dla~~~~a~GvHL~~~~l-~~------~~~r 175 (921)
.+.++|+.+++ ++.+.++..+.++++++.+.. ++.+.++ ++.+.+.+.|+|.|||..... +. ...|
T Consensus 65 vA~~GGlgii~---~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~ 141 (361)
T 3khj_A 65 MARLGGIGIIH---KNMDMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIK 141 (361)
T ss_dssp HHHTTCEEEEC---SSSCHHHHHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHH
T ss_pred HHHcCCCeEEe---cCCCHHHHHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHH
Confidence 35578888887 578888888888888877643 4555554 677788889999999843322 21 1223
Q ss_pred HhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CC--CCCCcc----hhhh---hhcCCCCEEE
Q 002437 176 NTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EG--QKADVI----ENSL---FTNVKIPIFI 240 (921)
Q Consensus 176 ~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk--~~~g~~----~~~~---~~~~~~Pv~a 240 (921)
...+ - .++...+++.++++.+ .+.|||||.+| |- |. ...|.. ..++ ++..++||+|
T Consensus 142 ~~~~----~----~Vivg~v~t~e~A~~l-~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA 212 (361)
T 3khj_A 142 SKMN----I----DVIVGNVVTEEATKEL-IENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA 212 (361)
T ss_dssp HHCC----C----EEEEEEECSHHHHHHH-HHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred HhcC----C----cEEEccCCCHHHHHHH-HHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEE
Confidence 3322 1 2454578999999999 89999999996 32 11 122222 2233 4456899999
Q ss_pred EcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 241 MNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 241 iGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.||| ++.++.+++++||++|.+.++.+.
T Consensus 213 ~GGI~~~~di~kala~GAd~V~vGs~~~~ 241 (361)
T 3khj_A 213 DGGIRYSGDIGKALAVGASSVMIGSILAG 241 (361)
T ss_dssp ESCCCSHHHHHHHHHHTCSEEEESTTTTT
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEChhhhc
Confidence 9999 799999999999999988766655
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-07 Score=100.50 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=68.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC----------CHH-HHHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL----------TES-EVVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~----------t~~-e~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|.. .....+..+++.+|+||||+|.++.. +.. -..++..+.. .+.|+++|+||
T Consensus 194 ~l~iwDt~GQe----~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK 269 (353)
T 1cip_A 194 HFKMFDVGGQR----SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNK 269 (353)
T ss_dssp EEEEEEECCSG----GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEEC
T ss_pred eEEEEeCCCch----hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEEC
Confidence 47899999974 34456788999999999999998632 122 2345555543 35799999999
Q ss_pred CCCCCCh----------------HHHHHHHHHHHHHHHHhhC---CCCCeEEEecccch
Q 002437 501 SDLYQNA----------------FELEEAISFVKENTMKLLN---IENVTIYPVSARST 540 (921)
Q Consensus 501 ~D~~~~~----------------~~~~~v~~~~~~~~~~~~~---~~~~~v~~vSA~~~ 540 (921)
+|+.... ...+++.+++...+..+.. .....++++||+.+
T Consensus 270 ~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~ 328 (353)
T 1cip_A 270 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 328 (353)
T ss_dssp HHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred cCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence 9985211 1245566666655444421 23567899999987
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=95.05 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=67.9
Q ss_pred HHHHHHhcccCCCCccccCeEEE-ecCCHHHHHcccccCCCCEEEeCCC-C-----------------------------
Q 002437 171 AIVARNTMKDSMSESVVLPLVGR-NVQTLDAAFNASSSEGADFLVCCFG-E----------------------------- 219 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~-S~h~~~e~~~A~~~~gaDyv~~gpv-T----------------------------- 219 (921)
...+|+..+ ++ . ++|+ ++|+++++..| .+.||||+ ++|. +
T Consensus 52 i~~ir~~~~---~~-~---~ig~~~v~~~~~~~~a-~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~ 122 (205)
T 1wa3_A 52 IKELSFLKE---KG-A---IIGAGTVTSVEQCRKA-VESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMK 122 (205)
T ss_dssp HHHTHHHHH---TT-C---EEEEESCCSHHHHHHH-HHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHH
T ss_pred HHHHHHHCC---CC-c---EEEecccCCHHHHHHH-HHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHH
Confidence 344566553 24 2 6788 66999999999 89999999 9987 3
Q ss_pred ------CCCC----Ccc-hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 220 ------GQKA----DVI-ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 220 ------k~~~----g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|.++ |+. ..++++.. ++||++.|||+++|+.+++++||++|++.++.++
T Consensus 123 ~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 123 LGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp TTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC
T ss_pred cCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCCEEEECccccC
Confidence 2122 122 25566666 7999999999999999999999999998887765
|
| >1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=6.2e-07 Score=76.99 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002437 854 AREIEEAMQKDLQETVGHLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQNLH 919 (921)
Q Consensus 854 ~~~~~~~l~~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~ 919 (921)
++.....-.+|+++||+.+|++||..++.+.++++.|+++|+..+..|+.++++++.||||++||+
T Consensus 19 v~~TSsncshQVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~ 84 (96)
T 1t3j_A 19 HMFTSANCSHQVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLE 84 (96)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444555899999999999999999999999999999999999999999999999999999885
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-07 Score=95.48 Aligned_cols=169 Identities=11% Similarity=-0.034 Sum_probs=110.8
Q ss_pred EcCCCCCCC--chHHHHHHHHhcCCcEEEEeCCC------CCHHHHHHHHHHHHHHh-h-c-CceEEecCc---HHHHHh
Q 002437 91 EPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGE------ASGKSVYEAACLLKSVV-K-D-RALFLIAER---VDIAAA 156 (921)
Q Consensus 91 it~~~~~~~--~~~~~~~~~l~~g~~~vqlR~k~------~~~~~~~~~a~~l~~~~-~-~-~~~~ivnd~---~dla~~ 156 (921)
|+|.-++.+ ++-+.++.+.++|++++|++-.+ .+-. ...++.+++.| . . .+-++++|. ++....
T Consensus 8 i~pSila~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G--~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~ 85 (227)
T 1tqx_A 8 IAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFG--PPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT 85 (227)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCC--HHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT
T ss_pred EEeehhcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcC--HHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh
Confidence 444433333 77788888989999999999732 3211 35778888888 3 3 788999983 333333
Q ss_pred CCCCeEEcCCCC-CCHHHHH---HhcccCCCCccccCeEEEec--CCHHHHHcccccC-CCCEEEeCCC----CCCCC--
Q 002437 157 VNASGVLLSDQG-LPAIVAR---NTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSE-GADFLVCCFG----EGQKA-- 223 (921)
Q Consensus 157 ~~a~GvHL~~~~-l~~~~~r---~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~-gaDyv~~gpv----Tk~~~-- 223 (921)
.+.-.||+.+.+ .+....+ .... .+ . .+|+++ +++.+..+..... .+|||.+.+| .....
T Consensus 86 Ad~itvH~ea~~~~~~~~i~~~~~i~~---~G-~---k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~ 158 (227)
T 1tqx_A 86 SNQLTFHFEALNEDTERCIQLAKEIRD---NN-L---WCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMH 158 (227)
T ss_dssp SSEEEEEGGGGTTCHHHHHHHHHHHHT---TT-C---EEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCG
T ss_pred CCEEEEeecCCccCHHHHHHHHHHHHH---cC-C---eEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccch
Confidence 333356998876 4444444 4432 22 2 467776 4543333321333 4999988887 22111
Q ss_pred -Ccc-hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 224 -DVI-ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 224 -g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.+. .+++++.. ++|+.+.|||+++|+.++.++||+.+++.++..+
T Consensus 159 ~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~ 206 (227)
T 1tqx_A 159 DMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFN 206 (227)
T ss_dssp GGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHT
T ss_pred HHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 222 35566555 7899999999999999999999999998888765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=8.2e-07 Score=99.36 Aligned_cols=108 Identities=17% Similarity=0.066 Sum_probs=63.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCC-CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRY-LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+.....+|+++|.+|+|||||+|+|+|... ...+...||..++.......+...............+ + ..+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v---~----~~i~ 88 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV---P----AFLT 88 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEE---C----EEEE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhccccccc---C----cceE
Confidence 455678999999999999999999999887 3344444555444332211110000000000000000 0 1378
Q ss_pred EEeCCCCChhh---hHHHHHHHHhcCCCCEEEEEEeCCC
Q 002437 439 IVDTPGTNVIL---QRQQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 439 lvDTPG~~~~~---~~~~~~~~~~l~~aD~il~V~da~~ 474 (921)
++||||+.... +.........++.+|++++|+|+..
T Consensus 89 lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 89 VFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred EEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999975321 1122235567789999999999864
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.22 E-value=1e-05 Score=88.50 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=57.8
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC----------CCCCHH-HHHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD----------RPLTES-EVVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~----------~~~t~~-e~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|. +.....+..|++.++++|||+|.+ +..+.. -..++..+.. .+.|+++|+||
T Consensus 162 ~l~iwDtaGQ----e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 162 PFHLIDVGGQ----RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp EEEEEECCSC----HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeccccCCCc----ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 4789999997 567788999999999999999987 222222 2245555533 35799999999
Q ss_pred CCCCCC----------------hHHHHHHHHHHHHHH
Q 002437 501 SDLYQN----------------AFELEEAISFVKENT 521 (921)
Q Consensus 501 ~D~~~~----------------~~~~~~v~~~~~~~~ 521 (921)
+|+... ....+++.+++.+.+
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f 274 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLF 274 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhc
Confidence 998531 113566667776665
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-06 Score=93.93 Aligned_cols=36 Identities=36% Similarity=0.430 Sum_probs=27.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVP 396 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~ 396 (921)
....++|+++|.+|+|||||||+|+|.+...++..|
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~ 152 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP 152 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCC
Confidence 346789999999999999999999998866555544
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.2e-06 Score=93.23 Aligned_cols=90 Identities=17% Similarity=0.053 Sum_probs=54.7
Q ss_pred ccEEEeCCCCChhhhHHHHHHH--HhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTE--EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~--~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++||||||............. ..+..+|.+++|+|+..+. ..........+......+|+||+|....... +
T Consensus 184 DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~gG~---~ 258 (443)
T 3dm5_A 184 DIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAKGGG---A 258 (443)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSSHHH---H
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcccccH---H
Confidence 6999999997543322211111 1224689999999998642 2334445555555677899999998765321 1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeccc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSAR 538 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~ 538 (921)
... .. ....||.+++.-
T Consensus 259 ls~-----~~---~~g~PI~fig~G 275 (443)
T 3dm5_A 259 LSA-----VA---ATGAPIKFIGTG 275 (443)
T ss_dssp HHH-----HH---TTCCCEEEEECS
T ss_pred HHH-----HH---HHCCCEEEEEcC
Confidence 111 11 135788888863
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-06 Score=87.88 Aligned_cols=159 Identities=12% Similarity=0.039 Sum_probs=106.6
Q ss_pred chHHHHHHHHhcCCcEEEEeCC------CCCHHHHHHHHHHHHHHhhc--CceEEecC---cHHHHHhCCCCeEEcCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGG------EASGKSVYEAACLLKSVVKD--RALFLIAE---RVDIAAAVNASGVLLSDQG 168 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k------~~~~~~~~~~a~~l~~~~~~--~~~~ivnd---~~dla~~~~a~GvHL~~~~ 168 (921)
++-+.++.+ ++|++++|++-. +.+- -...++.+++.|.. .+-++++| +++.+.+.|||++++-.+.
T Consensus 14 ~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~--G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea 90 (231)
T 3ctl_A 14 KFKEQIEFI-DSHADYFHIDIMDGHFVPNLTL--SPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPET 90 (231)
T ss_dssp GHHHHHHHH-HTTCSCEEEEEECSSSSSCCCB--CHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGG
T ss_pred hHHHHHHHH-HcCCCEEEEEEEeCccCccchh--cHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECccc
Confidence 677888888 999999999963 2332 13467778887743 68899988 7889999999998654333
Q ss_pred ---CCHHHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEeCCC----CCCCCC---cc-hhhhhhc--
Q 002437 169 ---LPAIVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVCCFG----EGQKAD---VI-ENSLFTN-- 233 (921)
Q Consensus 169 ---l~~~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~gpv----Tk~~~g---~~-~~~~~~~-- 233 (921)
-+....+.... .+ . .+|+++ +++.+.... ...++|||.+-+| ...... +. .+++++.
T Consensus 91 ~~~~~~~~i~~i~~---~G-~---k~gv~lnp~tp~~~~~~-~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~ 162 (231)
T 3ctl_A 91 INGQAFRLIDEIRR---HD-M---KVGLILNPETPVEAMKY-YIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRE 162 (231)
T ss_dssp CTTTHHHHHHHHHH---TT-C---EEEEEECTTCCGGGGTT-TGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH---cC-C---eEEEEEECCCcHHHHHH-HHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHh
Confidence 12222233221 12 2 355554 455555554 4568999987665 111111 22 2444443
Q ss_pred ---CCCCEEEEcCCCccChHHHHHcCCcEEEEe-eccccc
Q 002437 234 ---VKIPIFIMNASPLVDVSKFLKSGASGFVIS-LEDLSL 269 (921)
Q Consensus 234 ---~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~-~a~~~~ 269 (921)
.++|+.+-|||+++|+.++.++||+.+++- ++.++.
T Consensus 163 ~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~ 202 (231)
T 3ctl_A 163 REGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNH 202 (231)
T ss_dssp HHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGG
T ss_pred ccCCCceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCC
Confidence 369999999999999999999999999988 887763
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=9.2e-06 Score=88.57 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=69.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC----------CCCCHH-HHHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD----------RPLTES-EVVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~----------~~~t~~-e~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||.|. ++....+..|++.++++|||+|.+ +..+-. -..+++.+.. .+.|+++++||
T Consensus 168 ~l~iwDtgGQ----e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 168 IFRMVDVGGQ----RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp EEEEEEECCS----HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred eeEEEEcCCc----hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEEC
Confidence 4789999997 556677889999999999999654 222222 2345555543 35799999999
Q ss_pred CCCCCCh-----------------HHHHHHHHHHHHHHHHhhCC--CCCeEEEecccch
Q 002437 501 SDLYQNA-----------------FELEEAISFVKENTMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 501 ~D~~~~~-----------------~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~ 540 (921)
+|+.... .+.++..+++.+.+...... ....++++||+.+
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~ 302 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 302 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC
Confidence 9985321 24567777777666554322 3456788899886
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.13 E-value=6.6e-06 Score=87.31 Aligned_cols=169 Identities=10% Similarity=0.048 Sum_probs=102.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHhhc-CceEEecCc-----------HH
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS--GKSVYEAACLLKSVVKD-RALFLIAER-----------VD 152 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~--~~~~~~~a~~l~~~~~~-~~~~ivnd~-----------~d 152 (921)
++.+=|.... ++-..++...++|+++|-+=-+-.+ .... ..+.+.++. +..++.|.. ..
T Consensus 14 ~~~~~t~g~p---~~~~~~~~l~~~Gad~ielg~pr~~~~g~~~----~~~~~~l~~~~~~~~pn~~~~~~~~~~~~f~~ 86 (264)
T 1xm3_A 14 RLLLGTGKYP---SFDIQKEAVAVSESDILTFAVRRMNIFEASQ----PNFLEQLDLSKYTLLPNTAGASTAEEAVRIAR 86 (264)
T ss_dssp CEEEECSCSS---CHHHHHHHHHHHTCSEEEEETTSSTTC-----------CTTCCGGGSEEEEECTTCSSHHHHHHHHH
T ss_pred CCEEEecCCC---CHHHHHHHHHHcCCeEEEEcccccccCCCCH----HHHHHHHHhcCCeEcCCccccCCHHHHHHHHH
Confidence 3555554432 2223344444679888776444222 1111 233333444 566666652 24
Q ss_pred HHHhCCCCeE-E---cCCCC--C-----CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCCCC
Q 002437 153 IAAAVNASGV-L---LSDQG--L-----PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFGEG 220 (921)
Q Consensus 153 la~~~~a~Gv-H---L~~~~--l-----~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpvTk 220 (921)
+|.+++.+|+ . ++... + ....+|+.++ ++ .. ++-.++|+.++++++ .+.|+|||+. |++|.
T Consensus 87 ~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~---~g-~~--vi~~~~~~~~~a~~~-~~~gad~v~~~~~~~G 159 (264)
T 1xm3_A 87 LAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLE---EG-FI--VLPYTSDDVVLARKL-EELGVHAIMPGASPIG 159 (264)
T ss_dssp HHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHH---TT-CC--EEEEECSCHHHHHHH-HHHTCSCBEECSSSTT
T ss_pred HHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHC---CC-eE--EEEEcCCCHHHHHHH-HHhCCCEEEECCcccC
Confidence 5555554554 2 33222 1 1345566654 34 21 333789999999999 7999999966 55543
Q ss_pred CCCC---cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 221 QKAD---VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 221 ~~~g---~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+ .. .+++++..++||++.|||+ ++++.++.++||+||+|.+|.++.
T Consensus 160 t~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a 213 (264)
T 1xm3_A 160 SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGA 213 (264)
T ss_dssp CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 3322 22 4677778899999999995 899999999999999998887754
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=98.11 E-value=7.1e-06 Score=87.67 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=94.0
Q ss_pred chHHHHHHHHhcCCcEEEEeCC--CCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEcCCCCCCHHHHHH
Q 002437 100 DALDLIDEAVAKFVGIVVLNGG--EASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLLSDQGLPAIVARN 176 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k--~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL~~~~l~~~~~r~ 176 (921)
.+...++.|++.|++.|.++.. +.+..+.++.+.++.+.|+. |.++|++. +.|.|+..+
T Consensus 126 ~l~~~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~---------~~G~~~~~d--------- 187 (295)
T 3glc_A 126 AVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVT---------GVGKDMVRD--------- 187 (295)
T ss_dssp EECSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEE---------CC----CCS---------
T ss_pred hhHHHHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEEC---------CCCCccCCC---------
Confidence 3445689999999999999976 44566778889999999998 99999974 248888411
Q ss_pred hcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcCCCCEEEEcCCCcc------ChH
Q 002437 177 TMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFIMNASPLV------DVS 250 (921)
Q Consensus 177 ~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~~~Pv~aiGGi~~~------~~~ 250 (921)
++ +++ ..+..| .+.|||||-.++ |. .+ .+++++.+++||+++||+..+ ++.
T Consensus 188 ------~e-----~i~------~aariA-~elGAD~VKt~~-t~--e~--~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~ 244 (295)
T 3glc_A 188 ------QR-----YFS------LATRIA-AEMGAQIIKTYY-VE--KG--FERIVAGCPVPIVIAGGKKLPEREALEMCW 244 (295)
T ss_dssp ------HH-----HHH------HHHHHH-HHTTCSEEEEEC-CT--TT--HHHHHHTCSSCEEEECCSCCCHHHHHHHHH
T ss_pred ------HH-----HHH------HHHHHH-HHhCCCEEEeCC-CH--HH--HHHHHHhCCCcEEEEECCCCCHHHHHHHHH
Confidence 11 111 234455 689999999874 21 11 467787889999999999854 488
Q ss_pred HHHHcCCcEEEEeecccccc
Q 002437 251 KFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 251 ~~~~~Ga~gva~~~a~~~~~ 270 (921)
.++++||+|+++.++....-
T Consensus 245 ~ai~aGA~Gv~vGRnI~q~~ 264 (295)
T 3glc_A 245 QAIDQGASGVDMGRNIFQSD 264 (295)
T ss_dssp HHHHTTCSEEEESHHHHTSS
T ss_pred HHHHhCCeEEEeHHHHhcCc
Confidence 88899999999988887553
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.11 E-value=8.6e-06 Score=92.56 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=43.1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~ 506 (921)
+++||||||............... +..+|.+++|+|+..+. ......+.+.... ....+|+||+|....
T Consensus 182 D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 182 DVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHTTSCSCEEEEEECSSSCST
T ss_pred CEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHhhcccCCeEEEEeCCCCccc
Confidence 699999999864322222222222 24789999999997653 2233334444332 338899999998644
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.5e-06 Score=86.88 Aligned_cols=171 Identities=10% Similarity=0.022 Sum_probs=112.8
Q ss_pred EEEcCCCCCCC--chHHHHHHHHhcCCcEEEEeCCCCC------HHHHHHHHHHHHHHh-hc--CceEEec---CcHHHH
Q 002437 89 QLEPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGEAS------GKSVYEAACLLKSVV-KD--RALFLIA---ERVDIA 154 (921)
Q Consensus 89 ylit~~~~~~~--~~~~~~~~~l~~g~~~vqlR~k~~~------~~~~~~~a~~l~~~~-~~--~~~~ivn---d~~dla 154 (921)
+.|+|.-++.+ .+-+.++.+.++|++++|++-.+.. -. ....+.+++.+ .. .+-++++ +.++.+
T Consensus 28 ~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G--~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~ 105 (246)
T 3inp_A 28 IQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG--PMVLKALRDYGITAGMDVHLMVKPVDALIESF 105 (246)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC--HHHHHHHHHHTCCSCEEEEEECSSCHHHHHHH
T ss_pred CeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC--HHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHH
Confidence 45666655443 6778888888999999999875431 11 23566777777 33 6778888 467788
Q ss_pred HhCCCCeEEcCCCCCCH--HHHHHhcccCCCCccccCeEEEec--CCHHHHHcccccCCCCEEEeCCCC----CC---CC
Q 002437 155 AAVNASGVLLSDQGLPA--IVARNTMKDSMSESVVLPLVGRNV--QTLDAAFNASSSEGADFLVCCFGE----GQ---KA 223 (921)
Q Consensus 155 ~~~~a~GvHL~~~~l~~--~~~r~~~~~~~~~~~~~~~ig~S~--h~~~e~~~A~~~~gaDyv~~gpvT----k~---~~ 223 (921)
.+.|||++++..+..+. ...+.+-. .+ . .+|++. +++.+..+. ...++|||.+.+|- .. +.
T Consensus 106 ~~aGAd~itvH~Ea~~~~~~~i~~ir~---~G-~---k~Gvalnp~Tp~e~l~~-~l~~vD~VlvMsV~PGfgGQ~fi~~ 177 (246)
T 3inp_A 106 AKAGATSIVFHPEASEHIDRSLQLIKS---FG-I---QAGLALNPATGIDCLKY-VESNIDRVLIMSVNPGFGGQKFIPA 177 (246)
T ss_dssp HHHTCSEEEECGGGCSCHHHHHHHHHT---TT-S---EEEEEECTTCCSGGGTT-TGGGCSEEEEECSCTTC--CCCCTT
T ss_pred HHcCCCEEEEccccchhHHHHHHHHHH---cC-C---eEEEEecCCCCHHHHHH-HHhcCCEEEEeeecCCCCCcccchH
Confidence 88999999998765431 22233211 12 2 355555 454444444 34579999998771 11 11
Q ss_pred Ccc-hhhhhh-----cCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 224 DVI-ENSLFT-----NVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 224 g~~-~~~~~~-----~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++ .+++++ ..++|+-+.|||+++|+.++.++||+.+++.+|.++.
T Consensus 178 ~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a 229 (246)
T 3inp_A 178 MLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNS 229 (246)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEehHHhCC
Confidence 222 244443 2468999999999999999999999999988776653
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=83.53 Aligned_cols=171 Identities=12% Similarity=0.009 Sum_probs=109.3
Q ss_pred EcCCCCCCC--chHHHHHHHHhcCCcEEEEeCCCCC----HHHHHHHHHHHHHHh--h-c-CceEEec---CcHHHHHhC
Q 002437 91 EPHQVLAGG--DALDLIDEAVAKFVGIVVLNGGEAS----GKSVYEAACLLKSVV--K-D-RALFLIA---ERVDIAAAV 157 (921)
Q Consensus 91 it~~~~~~~--~~~~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~a~~l~~~~--~-~-~~~~ivn---d~~dla~~~ 157 (921)
|+|.-++.+ .+-+.++.+.+.|++++|++-.+.. -..=....+.+++.+ . . .+.++++ ++++.+.+.
T Consensus 7 i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~a 86 (228)
T 3ovp_A 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVA 86 (228)
T ss_dssp EEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHH
T ss_pred eeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHc
Confidence 445444333 6778888888999999999764321 000023566677764 2 2 6778888 578888889
Q ss_pred CCCeEEcCCCCCC--HHHHHHhcccCCCCccccCeEEEecC--CHHHHHcccccCCCCEEEeCCC----CCC---CCCcc
Q 002437 158 NASGVLLSDQGLP--AIVARNTMKDSMSESVVLPLVGRNVQ--TLDAAFNASSSEGADFLVCCFG----EGQ---KADVI 226 (921)
Q Consensus 158 ~a~GvHL~~~~l~--~~~~r~~~~~~~~~~~~~~~ig~S~h--~~~e~~~A~~~~gaDyv~~gpv----Tk~---~~g~~ 226 (921)
|||+||+..+... ....+..-. .. . .+|++++ +..+..+. ....+|||.+-+| ... +..++
T Consensus 87 Gad~itvH~Ea~~~~~~~i~~i~~---~G-~---k~gval~p~t~~e~l~~-~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ 158 (228)
T 3ovp_A 87 GANQYTFHLEATENPGALIKDIRE---NG-M---KVGLAIKPGTSVEYLAP-WANQIDMALVMTVEPGFGGQKFMEDMMP 158 (228)
T ss_dssp TCSEEEEEGGGCSCHHHHHHHHHH---TT-C---EEEEEECTTSCGGGTGG-GGGGCSEEEEESSCTTTCSCCCCGGGHH
T ss_pred CCCEEEEccCCchhHHHHHHHHHH---cC-C---CEEEEEcCCCCHHHHHH-HhccCCeEEEeeecCCCCCcccCHHHHH
Confidence 9999999766433 122222211 11 1 3555554 44333333 3446999998776 111 11222
Q ss_pred -hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+++++.. ++|+.+-|||+++|+.++.++||+++++.++.++.
T Consensus 159 ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a 203 (228)
T 3ovp_A 159 KVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRS 203 (228)
T ss_dssp HHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTC
T ss_pred HHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 35565554 68999999999999999999999999988776653
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=7.8e-06 Score=86.74 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=66.4
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcC-----CCCEEEEcCC
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNV-----KIPIFIMNAS 244 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~-----~~Pv~aiGGi 244 (921)
++..+|...+ +. + .|+++|+|++|+.+| .+.|||||.+++++. .. ..++.+.. .+|+.|.|||
T Consensus 182 av~~ar~~~~---~~-~---~I~VEV~tleea~eA-~~aGaD~I~LDn~~~--e~--l~~av~~l~~~~~~v~ieASGGI 249 (285)
T 1o4u_A 182 AVQEVRKIIP---FT-T---KIEVEVENLEDALRA-VEAGADIVMLDNLSP--EE--VKDISRRIKDINPNVIVEVSGGI 249 (285)
T ss_dssp HHHHHHTTSC---TT-S---CEEEEESSHHHHHHH-HHTTCSEEEEESCCH--HH--HHHHHHHHHHHCTTSEEEEEECC
T ss_pred HHHHHHHhCC---CC-c---eEEEEeCCHHHHHHH-HHcCCCEEEECCCCH--HH--HHHHHHHhhccCCCceEEEECCC
Confidence 4567777763 32 2 589999999999999 899999999998621 11 22222222 6899999999
Q ss_pred CccChHHHHHcCCcEEEEeecccc
Q 002437 245 PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 245 ~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+++|+.++.++|+++|++.++...
T Consensus 250 t~eni~~~a~tGVD~IsvGslt~s 273 (285)
T 1o4u_A 250 TEENVSLYDFETVDVISSSRLTLQ 273 (285)
T ss_dssp CTTTGGGGCCTTCCEEEEGGGTSS
T ss_pred CHHHHHHHHHcCCCEEEEeHHHcC
Confidence 999999999999999987665443
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=2.7e-05 Score=84.46 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=63.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
.+.+||| . +++..++..++..+|++|+|+|++++. +.... .++..+...+.|+++|+||+|+... ...++.
T Consensus 64 ~~~iwD~--q----er~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~-~~v~~~ 136 (301)
T 1u0l_A 64 SGVIENV--L----HRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE-DDLRKV 136 (301)
T ss_dssp SEEEEEE--C----CCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH-HHHHHH
T ss_pred eEEEEEE--c----cccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc-hhHHHH
Confidence 4789998 2 333345667899999999999999876 44443 4666666678999999999999743 222222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+.. ..+... .+++++||+++
T Consensus 137 ~~~~-----~~~~~~-~~~~~~SAktg 157 (301)
T 1u0l_A 137 RELE-----EIYSGL-YPIVKTSAKTG 157 (301)
T ss_dssp HHHH-----HHHTTT-SCEEECCTTTC
T ss_pred HHHH-----HHHhhh-CcEEEEECCCC
Confidence 2221 112222 68999999987
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.2e-05 Score=85.24 Aligned_cols=31 Identities=45% Similarity=0.559 Sum_probs=23.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVV 395 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~ 395 (921)
++++++|.+|+|||||+|+|.|.....++..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 7999999999999999999999876544433
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.82 E-value=3e-05 Score=87.63 Aligned_cols=89 Identities=24% Similarity=0.174 Sum_probs=53.3
Q ss_pred ccEEEeCCCCCh--hhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 436 EMIIVDTPGTNV--ILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 436 ~l~lvDTPG~~~--~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
+++||||||... ..+......... ....|.+++|+|+... .........+.+.-.+..+|+||+|.......
T Consensus 181 DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~a~~G~-- 256 (433)
T 3kl4_A 181 DIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGTAKGGG-- 256 (433)
T ss_dssp SEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGCSCHHH--
T ss_pred CEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecccccccchH--
Confidence 689999999754 332221112111 1257999999999854 22333445555555678899999998755322
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+...... . ..||.+++.
T Consensus 257 -als~~~~-----~---g~Pi~fig~ 273 (433)
T 3kl4_A 257 -ALSAVVA-----T---GATIKFIGT 273 (433)
T ss_dssp -HHHHHHH-----H---TCEEEEEEC
T ss_pred -HHHHHHH-----H---CCCEEEEEC
Confidence 2222211 1 478888886
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.82 E-value=6.4e-07 Score=95.43 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=62.0
Q ss_pred EecCCHHHHHc-ccccCCCCE-----------------EEeCCC----CCCC---CCcc-hhhhhhcCCCCE--EEEcCC
Q 002437 193 RNVQTLDAAFN-ASSSEGADF-----------------LVCCFG----EGQK---ADVI-ENSLFTNVKIPI--FIMNAS 244 (921)
Q Consensus 193 ~S~h~~~e~~~-A~~~~gaDy-----------------v~~gpv----Tk~~---~g~~-~~~~~~~~~~Pv--~aiGGi 244 (921)
+||||.+|+.. | .+.|+|| +.+||| ||+. .++. ..++.+..++|| ||+|||
T Consensus 173 ~s~~~~~El~~~A-~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~VAeGGI 251 (330)
T 2yzr_A 173 LQRMTDEEVYGVA-KFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGV 251 (330)
T ss_dssp HTTSCHHHHHHHH-HHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEEEECSCC
T ss_pred hccCCHHHHHHHH-HHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEEEEECCC
Confidence 48899999965 6 7899999 677887 4532 1223 467777789998 799999
Q ss_pred -CccChHHHHHcCCcEEEEeecccccc
Q 002437 245 -PLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 245 -~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
+++|+..++++|++||+|.++.++.-
T Consensus 252 ~Tpeda~~~l~~GaDgV~VGsaI~~a~ 278 (330)
T 2yzr_A 252 ATPADAALMMQLGSDGVFVGSGIFKSE 278 (330)
T ss_dssp CSHHHHHHHHHTTCSCEEESHHHHTSS
T ss_pred CCHHHHHHHHHcCcCEEeeHHHHhcCC
Confidence 69999999999999999999998653
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.74 E-value=2.7e-05 Score=79.78 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=104.1
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE----ecC---c-HHHHHhCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL----IAE---R-VDIAAAVN 158 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i----vnd---~-~dla~~~~ 158 (921)
+|.+-.|.. ...+.++.++++ ..|++++-+=-+.. -..=.+..+.+++.+. +.++. +++ . ++.|.+.|
T Consensus 2 ~li~a~D~~-~~~~~~~~~~~~-~~~~diie~G~p~~-~~~g~~~i~~ir~~~~-~~~i~~~~~~~~~~~~~~~~~~~~G 77 (211)
T 3f4w_A 2 KLQLALDEL-TLPEAMVFMDKV-VDDVDIIEVGTPFL-IREGVNAIKAIKEKYP-HKEVLADAKIMDGGHFESQLLFDAG 77 (211)
T ss_dssp EEEEEECSC-CHHHHHHHHHHH-GGGCSEEEECHHHH-HHHTTHHHHHHHHHCT-TSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred cEEEEeCCC-CHHHHHHHHHHh-hcCccEEEeCcHHH-HhccHHHHHHHHHhCC-CCEEEEEEEeccchHHHHHHHHhcC
Confidence 455555532 223556667666 57888876522110 0111344555655532 23443 333 2 67788899
Q ss_pred CCeEEcCCCCCC--HHHHHHhcccCCCCccccCeEEEe---cCCH-HHHHcccccCCCCEEEeCCC-C---CCCCCcc-h
Q 002437 159 ASGVLLSDQGLP--AIVARNTMKDSMSESVVLPLVGRN---VQTL-DAAFNASSSEGADFLVCCFG-E---GQKADVI-E 227 (921)
Q Consensus 159 a~GvHL~~~~l~--~~~~r~~~~~~~~~~~~~~~ig~S---~h~~-~e~~~A~~~~gaDyv~~gpv-T---k~~~g~~-~ 227 (921)
+|+|++...... .....+.... .+ . -+++. +.+. +.+..+ .+.|+||+.+.|. + ..+.++. .
T Consensus 78 ad~v~v~~~~~~~~~~~~~~~~~~--~g-~---~~~v~~~~~~t~~~~~~~~-~~~g~d~i~v~~g~~g~~~~~~~~~~i 150 (211)
T 3f4w_A 78 ADYVTVLGVTDVLTIQSCIRAAKE--AG-K---QVVVDMICVDDLPARVRLL-EEAGADMLAVHTGTDQQAAGRKPIDDL 150 (211)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHH--HT-C---EEEEECTTCSSHHHHHHHH-HHHTCCEEEEECCHHHHHTTCCSHHHH
T ss_pred CCEEEEeCCCChhHHHHHHHHHHH--cC-C---eEEEEecCCCCHHHHHHHH-HHcCCCEEEEcCCCcccccCCCCHHHH
Confidence 999999765421 1112111100 01 1 23332 3454 557787 7899999999876 1 2222444 4
Q ss_pred hhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 228 NSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.++++.. ++|+++.|||+++|+.++.++||+||++.++.++.
T Consensus 151 ~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~ 193 (211)
T 3f4w_A 151 ITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHA 193 (211)
T ss_dssp HHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTC
T ss_pred HHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 6777765 89999999999999999999999999988877664
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=97.73 E-value=4e-05 Score=81.93 Aligned_cols=127 Identities=12% Similarity=0.037 Sum_probs=84.5
Q ss_pred HHHHHHHhhcCceEEec------CcHHHHHhCCCCeEEcCCCCCC---HHHHHHhcccCCCCccccCeEEEecCCHHHHH
Q 002437 132 ACLLKSVVKDRALFLIA------ERVDIAAAVNASGVLLSDQGLP---AIVARNTMKDSMSESVVLPLVGRNVQTLDAAF 202 (921)
Q Consensus 132 a~~l~~~~~~~~~~ivn------d~~dla~~~~a~GvHL~~~~l~---~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~ 202 (921)
.+++++.| ..+++.- +.++++.+.|||.|..+....+ ...++... +. . .+-+.||+.+|+.
T Consensus 70 i~~i~~~v--~iPvl~k~~i~~ide~qil~aaGAD~Id~s~~~~~~~li~~i~~~~----~g-~---~vvv~v~~~~Ea~ 139 (297)
T 4adt_A 70 IEEIRKCI--SINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHK----FK-T---PFVCGCTNLGEAL 139 (297)
T ss_dssp HHHHHTTC--CSEEEEEEETTCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGG----CS-S---CEEEEESSHHHHH
T ss_pred HHHHHHhc--CCCEEEeccCCcHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHhcC----CC-C---eEEEEeCCHHHHH
Confidence 34444444 5677753 3466777899999943221111 11122210 11 1 2334689999999
Q ss_pred cccccCCCCEEEeCCC--CCC---------------------------------CCCcc-hhhhhhcCCCCEE--EEcCC
Q 002437 203 NASSSEGADFLVCCFG--EGQ---------------------------------KADVI-ENSLFTNVKIPIF--IMNAS 244 (921)
Q Consensus 203 ~A~~~~gaDyv~~gpv--Tk~---------------------------------~~g~~-~~~~~~~~~~Pv~--aiGGi 244 (921)
+| ...|+|+|+..-. |.. .+++. ...+++..++||+ |.|||
T Consensus 140 ~a-~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI 218 (297)
T 4adt_A 140 RR-ISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGI 218 (297)
T ss_dssp HH-HHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCC
T ss_pred HH-HhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCC
Confidence 99 7999999998732 321 11222 3667777889986 99999
Q ss_pred -CccChHHHHHcCCcEEEEeeccccc
Q 002437 245 -PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 245 -~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+++++..++++||+||++.++.++.
T Consensus 219 ~t~~dv~~~~~~GAdgVlVGsai~~a 244 (297)
T 4adt_A 219 ATPADAAMCMQLGMDGVFVGSGIFES 244 (297)
T ss_dssp CSHHHHHHHHHTTCSCEEESHHHHTS
T ss_pred CCHHHHHHHHHcCCCEEEEhHHHHcC
Confidence 9999999999999999999888864
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00024 Score=71.91 Aligned_cols=156 Identities=12% Similarity=-0.024 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCcEEEEeC-CCCCHHH-HHHHHHHHHHHhhc---CceEEecCc----HHHHHhCCCCeEEcCCCCCCHHH
Q 002437 103 DLIDEAVAKFVGIVVLNG-GEASGKS-VYEAACLLKSVVKD---RALFLIAER----VDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~-k~~~~~~-~~~~a~~l~~~~~~---~~~~ivnd~----~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
+-+..+.+.|++++=+=- +.. .+. -.+.|++|...+.. .+-+++|.. .+++..++.|.|||-.+. +...
T Consensus 13 eda~~a~~~GaD~iGfif~~~S-pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~e-~~~~ 90 (205)
T 1nsj_A 13 EDALFSVESGADAVGFVFYPKS-KRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHGEE-PIEL 90 (205)
T ss_dssp HHHHHHHHHTCSEEEEECCTTC-TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEECSCC-CHHH
T ss_pred HHHHHHHHcCCCEEEEEecCCC-CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECCCC-CHHH
Confidence 557778889988766552 222 221 13456666665543 466889988 456777899999995443 5555
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc--h--hhhhh--cCCCCEEEEcCCCcc
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI--E--NSLFT--NVKIPIFIMNASPLV 247 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--~--~~~~~--~~~~Pv~aiGGi~~~ 247 (921)
.+.+-. .- .+ |-..++++..++..+ ....+||++|-..++..-|.+ . ..+.. ..+.||+.-||++++
T Consensus 91 ~~~l~~---~~-~v--ika~~v~~~~~l~~~-~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~~~~~~p~~LAGGL~pe 163 (205)
T 1nsj_A 91 CRKIAE---RI-LV--IKAVGVSNERDMERA-LNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSGGLNPE 163 (205)
T ss_dssp HHHHHT---TS-EE--EEEEEESSHHHHHHH-GGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGGGSSCEEEESSCCTT
T ss_pred HHHHhc---CC-CE--EEEEEcCCHHHHHHH-HHcCCCEEEECCCCCCCCCCCCccCHHHHHhhhcCCCcEEEECCCCHH
Confidence 555420 01 22 457778887777655 344499999864322111222 1 11222 237899999999999
Q ss_pred ChHHHHH-cCCcEEEEeeccc
Q 002437 248 DVSKFLK-SGASGFVISLEDL 267 (921)
Q Consensus 248 ~~~~~~~-~Ga~gva~~~a~~ 267 (921)
|+.++.+ .+..||-+++..-
T Consensus 164 NV~~ai~~~~p~gVDvsSGvE 184 (205)
T 1nsj_A 164 NVRSAIDVVRPFAVDVSSGVE 184 (205)
T ss_dssp THHHHHHHHCCSEEEESGGGE
T ss_pred HHHHHHHhcCCCEEEECCcee
Confidence 9987654 7999998766554
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=7e-05 Score=84.94 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...|+|+|.+++|||||+|.|+|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 457999999999999999999964
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0001 Score=79.59 Aligned_cols=68 Identities=24% Similarity=0.133 Sum_probs=42.6
Q ss_pred ccEEEeCCCCCh--hhhHHHHHHH--HhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNV--ILQRQQRLTE--EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~--~~~~~~~~~~--~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~ 506 (921)
+++||||||... .......... ..+..+|.+++|+|+... .......+.+... .+ ..+|+||+|....
T Consensus 182 D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~~-~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 182 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQA-SKIGTIIITKMDGTAK 254 (297)
T ss_dssp SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHT-CTTEEEEEECGGGCTT
T ss_pred CEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHhh-CCCCEEEEeCCCCCcc
Confidence 689999999865 3222111111 123468999999998743 2334444444443 45 7889999998754
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.64 E-value=3.1e-05 Score=79.71 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=81.2
Q ss_pred HHHHHhCCCCeEEcCCC--CCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCC--------C
Q 002437 151 VDIAAAVNASGVLLSDQ--GLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGE--------G 220 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~--~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvT--------k 220 (921)
++.+.++|||||||+.. .+|..+.+.+.......+. .+-+.||+.++..++ ...|++|+.+.|+. +
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl---~~iv~v~~~~e~~~~-~~~~~~~i~~~~~~~iGtG~~~~ 150 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGL---ETIVCTNNINTSKAV-AALSPDCIAVEPPELIGTGIPVS 150 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTC---EEEEEESSSHHHHHH-TTTCCSEEEECCCC---------
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCC---eEEEEeCCchHHHHH-HhCCCCEEEEEeccccccCCCCc
Confidence 78999999999999886 5776555554310000111 356678998888888 78899999999983 2
Q ss_pred CC-CC-cc--hhhhhhcC-CCCEEEEcCCCc-cChHHHHHcCCcEEEEeeccccc
Q 002437 221 QK-AD-VI--ENSLFTNV-KIPIFIMNASPL-VDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 221 ~~-~g-~~--~~~~~~~~-~~Pv~aiGGi~~-~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+. +. +. .+.+++.. ++||++.|||+. +++..+.+.|++|+.|-+|.++.
T Consensus 151 t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~ 205 (219)
T 2h6r_A 151 KANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKA 205 (219)
T ss_dssp -----CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTC
T ss_pred cCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCc
Confidence 21 22 22 13333333 799999999985 66777999999999999998875
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.8e-05 Score=82.62 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=63.1
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-----CCCEEEEcC
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-----KIPIFIMNA 243 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-----~~Pv~aiGG 243 (921)
+...+|... |..+ .++++|++++|+.+| .+.|+|||.+++. +++ .+.+++.. ++|+.|.||
T Consensus 171 ai~~~r~~~----~~~~---~i~vev~tlee~~~A-~~aGaD~I~ld~~-----~~~~l~~~v~~l~~~~~~~~i~AsGG 237 (273)
T 2b7n_A 171 FLTHARKNL----PFTA---KIEIECESFEEAKNA-MNAGADIVMCDNL-----SVLETKEIAAYRDAHYPFVLLEASGN 237 (273)
T ss_dssp HHHHHGGGS----CTTC---CEEEEESSHHHHHHH-HHHTCSEEEEETC-----CHHHHHHHHHHHHHHCTTCEEEEESS
T ss_pred HHHHHHHhC----CCCc---eEEEEcCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhhccCCCcEEEEECC
Confidence 455666665 3311 589999999999999 7899999999875 223 23222222 389999999
Q ss_pred CCccChHHHHHcCCcEEEEeec
Q 002437 244 SPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 244 i~~~~~~~~~~~Ga~gva~~~a 265 (921)
|+++|+.++.++|+++|++.++
T Consensus 238 I~~~ni~~~~~aGaD~i~vGs~ 259 (273)
T 2b7n_A 238 ISLESINAYAKSGVDAISVGAL 259 (273)
T ss_dssp CCTTTHHHHHTTTCSEEECTHH
T ss_pred CCHHHHHHHHHcCCcEEEEcHH
Confidence 9999999999999999977554
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00049 Score=69.50 Aligned_cols=154 Identities=8% Similarity=-0.100 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCcEEEEeC-CCCCHHH-HHHHHHHHHHHhhc---CceEEecCc----HHHHHhCCCCeEEcCCCCCCHHH
Q 002437 103 DLIDEAVAKFVGIVVLNG-GEASGKS-VYEAACLLKSVVKD---RALFLIAER----VDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~-k~~~~~~-~~~~a~~l~~~~~~---~~~~ivnd~----~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
+-+..+.+.|++++=+=- +.. .+. -.+.|++|...+.. .+-+++|.. .+++..++.|.|||-.+. +...
T Consensus 12 eda~~a~~~GaD~iGfif~~~S-pR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~e-~~~~ 89 (203)
T 1v5x_A 12 EDALLAEALGAFALGFVLAPGS-RRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHGEE-PPEW 89 (203)
T ss_dssp HHHHHHHHHTCSEEEEECCTTC-TTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECSCC-CHHH
T ss_pred HHHHHHHHcCCCEEEEEecCCC-CCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECCCC-CHHH
Confidence 557778889988766552 222 221 13556666665543 466889988 556778899999995443 5556
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcch--hhhhh--cCCCCEEEEcCCCccCh
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIE--NSLFT--NVKIPIFIMNASPLVDV 249 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~--~~~~~--~~~~Pv~aiGGi~~~~~ 249 (921)
.+.+ . .+..+ |-..++++..++ .+ ....+||++|-..+ ..-|... ..+.. ..+.||+.-||++++|+
T Consensus 90 ~~~l-~---~~~~v--ika~~v~~~~~l-~~-~~~~~d~~LlD~~~-gGtG~~fdW~~l~~~~~~~~p~~LAGGL~peNV 160 (203)
T 1v5x_A 90 AEAV-G---RFYPV--IKAFPLEGPARP-EW-ADYPAQALLLDGKR-PGSGEAYPRAWAKPLLATGRRVILAGGIAPENL 160 (203)
T ss_dssp HHHH-T---TTSCE--EEEEECSSSCCG-GG-GGSSCSEEEEECSS-TTSCCCCCGGGGHHHHHTTSCEEECSSCCSTTH
T ss_pred HHHh-c---cCCCE--EEEEEcCChHhh-hh-hhcCCCEEEEcCCC-CCCCCccCHHHHHhhhccCCcEEEECCCCHHHH
Confidence 6665 2 11122 456677766555 44 34449999986431 1111111 11222 24689999999999999
Q ss_pred HHHHHcCCcEEEEeeccc
Q 002437 250 SKFLKSGASGFVISLEDL 267 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~ 267 (921)
.++...+..||-+++..-
T Consensus 161 ~~ai~~~p~gVDvsSGvE 178 (203)
T 1v5x_A 161 EEVLALRPYALDLASGVE 178 (203)
T ss_dssp HHHHHHCCSEEEESGGGE
T ss_pred HHHHhcCCCEEEeCCcee
Confidence 877777999997766554
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00017 Score=77.34 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=56.1
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
=+.||.. ......+.+.+..+|+|++|+|+..|.+..+..+-+.+ .++|+++|+||+|+.+. +..+...++..
T Consensus 4 ~w~PGhm---~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~-~~~~~~~~~~~- 76 (282)
T 1puj_A 4 QWFPGHM---AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA-AVTQQWKEHFE- 76 (282)
T ss_dssp -----CT---THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH-HHHHHHHHHHH-
T ss_pred cCCchHH---HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH-HHHHHHHHHHH-
Confidence 3568863 34456688889999999999999988766543333333 46899999999999853 33333222221
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+.+++++||+.+
T Consensus 77 -------~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 77 -------NQGIRSLSINSVNG 90 (282)
T ss_dssp -------TTTCCEEECCTTTC
T ss_pred -------hcCCcEEEEECCCc
Confidence 12358999999875
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.50 E-value=5.4e-05 Score=81.28 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-----CCCEEEEcC
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-----KIPIFIMNA 243 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-----~~Pv~aiGG 243 (921)
+...+|+..+ +. + .++++|++++|+.+| .+.|+|||.+++. +++ .+.+++.. ++|+.|.||
T Consensus 186 ai~~~r~~~~---~~-~---~i~vev~tlee~~~A-~~aGaD~I~ld~~-----~~~~l~~~v~~l~~~~~~~~I~ASGG 252 (299)
T 2jbm_A 186 AVRAARQAAD---FA-L---KVEVECSSLQEAVQA-AEAGADLVLLDNF-----KPEELHPTATVLKAQFPSVAVEASGG 252 (299)
T ss_dssp HHHHHHHHHT---TT-S---CEEEEESSHHHHHHH-HHTTCSEEEEESC-----CHHHHHHHHHHHHHHCTTSEEEEESS
T ss_pred HHHHHHHhCC---cC-C---eEEEecCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhhccCCCeeEEEECC
Confidence 4567777763 32 2 588999999999999 7999999999875 233 23222222 389999999
Q ss_pred CCccChHHHHHcCCcEEEEeec
Q 002437 244 SPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 244 i~~~~~~~~~~~Ga~gva~~~a 265 (921)
|+++|+.++.++|+++|++.++
T Consensus 253 It~~ni~~~~~aGaD~i~vGs~ 274 (299)
T 2jbm_A 253 ITLDNLPQFCGPHIDVISMGML 274 (299)
T ss_dssp CCTTTHHHHCCTTCCEEECTHH
T ss_pred CCHHHHHHHHHCCCCEEEEChh
Confidence 9999999999999999976553
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=4.1e-05 Score=78.83 Aligned_cols=170 Identities=12% Similarity=0.083 Sum_probs=99.0
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEe----cC----cHHHHHhCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLI----AE----RVDIAAAVN 158 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~iv----nd----~~dla~~~~ 158 (921)
+|++-.|.. ...+.++.+++ +.+|++++-+--+ ..-..=.+..+.+++.+. +.++++ +| ..+.+.+.|
T Consensus 8 ~lilalD~~-~~~~~~~~~~~-~~~~vd~ie~g~~-~~~~~G~~~i~~lr~~~~-~~~i~ld~~l~d~p~~~~~~~~~aG 83 (218)
T 3jr2_A 8 MIQIALDQT-NLTDAVAVASN-VASYVDVIEVGTI-LAFAEGMKAVSTLRHNHP-NHILVCDMKTTDGGAILSRMAFEAG 83 (218)
T ss_dssp EEEEEECCS-SHHHHHHHHHH-HGGGCSEEEECHH-HHHHHTTHHHHHHHHHCT-TSEEEEEEEECSCHHHHHHHHHHHT
T ss_pred CeEEEeCCC-CHHHHHHHHHH-hcCCceEEEeCcH-HHHhcCHHHHHHHHHhCC-CCcEEEEEeecccHHHHHHHHHhcC
Confidence 566655642 23356677776 5788999876311 000011234555555432 233432 23 356677889
Q ss_pred CCeE--EcCCCCCCHHHHHHh---cccCCCCccccC--eEEEecCCHHHHHcccccCCCCEEEeCCC-CC----CCCCcc
Q 002437 159 ASGV--LLSDQGLPAIVARNT---MKDSMSESVVLP--LVGRNVQTLDAAFNASSSEGADFLVCCFG-EG----QKADVI 226 (921)
Q Consensus 159 a~Gv--HL~~~~l~~~~~r~~---~~~~~~~~~~~~--~ig~S~h~~~e~~~A~~~~gaDyv~~gpv-Tk----~~~g~~ 226 (921)
+|++ |-....-....+.+. .| -. ++ ++|. .+.+++..+ .+.|+||+++.+. +. ...+..
T Consensus 84 ad~i~vh~~~~~~~~~~~~~~~~~~g---~~---~~~d~l~~--~T~~~~~~~-~~~g~d~v~~~~~~~~~~~g~~~~~~ 154 (218)
T 3jr2_A 84 ADWITVSAAAHIATIAACKKVADELN---GE---IQIEIYGN--WTMQDAKAW-VDLGITQAIYHRSRDAELAGIGWTTD 154 (218)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHHT---CE---EEEECCSS--CCHHHHHHH-HHTTCCEEEEECCHHHHHHTCCSCHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHhC---Cc---cceeeeec--CCHHHHHHH-HHcCccceeeeeccccccCCCcCCHH
Confidence 9997 643321111222111 12 11 01 2333 356788887 6789999988554 11 111222
Q ss_pred -hhhhhhc--CCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTN--VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~--~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+++. .++|+.+.|||+++|+.++.++||+++++.++..+.
T Consensus 155 ~l~~i~~~~~~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 155 DLDKMRQLSALGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGA 200 (218)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcCC
Confidence 2334333 489999999999999999999999999999888764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00024 Score=76.88 Aligned_cols=81 Identities=23% Similarity=0.198 Sum_probs=54.9
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCe
Q 002437 454 RLTEEFVPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVT 531 (921)
Q Consensus 454 ~~~~~~l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (921)
.+.+.++.++|++++|+|+++|. +.... .++..+...+.|+++|+||+|+..+ .++.. .......... ...+
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~-~~v~~-~~~~~~~~~~----~g~~ 144 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE-EEKKE-LERWISIYRD----AGYD 144 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH-HHHHH-HHHHHHHHHH----TTCE
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc-cccHH-HHHHHHHHHH----CCCe
Confidence 34446889999999999999874 55543 4666677788999999999999853 21111 1111222222 2368
Q ss_pred EEEecccch
Q 002437 532 IYPVSARST 540 (921)
Q Consensus 532 v~~vSA~~~ 540 (921)
++++||+++
T Consensus 145 ~~~~SA~~g 153 (302)
T 2yv5_A 145 VLKVSAKTG 153 (302)
T ss_dssp EEECCTTTC
T ss_pred EEEEECCCC
Confidence 999999987
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00052 Score=77.93 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=69.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH-------CCCCCCCCCCCccce-------------eEEEEccCC-ccchh-hc-ccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL-------GKRYLKDGVVPTTNE-------------ITFLRFSDL-ASEEQ-QR-CER 419 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl-------g~~~~~~~~~~tT~~-------------~~~~~~~~~-~~~~~-~~-~~~ 419 (921)
.+..|+|+|.+|+||||+...|. |.+++..+..+.... +.++..... +.... .. ...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999997 766654333321110 000000000 00000 00 000
Q ss_pred cCCCeEEeecCCCcccccEEEeCCCCChhhhHHHHH--HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEE
Q 002437 420 HPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRL--TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVF 496 (921)
Q Consensus 420 ~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~~~~~~--~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-viv 496 (921)
... .-.+++||||||........... ....+..+|.+++|+|+.... ......+.+... .+ .-+
T Consensus 179 ~~~----------~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~-l~i~gv 245 (433)
T 2xxa_A 179 AKL----------KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNEA-LPLTGV 245 (433)
T ss_dssp HHH----------TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHH-SCCCCE
T ss_pred HHh----------CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhcc-CCCeEE
Confidence 000 01269999999975432222111 112345789999999997542 223333333332 33 457
Q ss_pred EEeCCCCCCC
Q 002437 497 VLNKSDLYQN 506 (921)
Q Consensus 497 VlNK~D~~~~ 506 (921)
|+||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 9999998644
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00016 Score=77.42 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=63.3
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi~~~ 247 (921)
...+|... |+. .|+++|++++++.+| .+.|+|||.++++ +++ .+.+++.. ++|+.|.|||+++
T Consensus 199 i~~~r~~~----~~~----kI~vev~tlee~~eA-~~aGaD~I~ld~~-----~~e~l~~~v~~~~~~~~I~ASGGIt~~ 264 (296)
T 1qap_A 199 VEKAFWLH----PDV----PVEVEVENLDELDDA-LKAGADIIMLDNF-----NTDQMREAVKRVNGQARLEVSGNVTAE 264 (296)
T ss_dssp HHHHHHHS----TTS----CEEEEESSHHHHHHH-HHTTCSEEEESSC-----CHHHHHHHHHTTCTTCCEEECCCSCHH
T ss_pred HHHHHHhC----CCC----cEEEEeCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhCCCCeEEEECCCCHH
Confidence 45667766 331 488899999999999 8999999999875 222 23344433 6899999999999
Q ss_pred ChHHHHHcCCcEEEEee
Q 002437 248 DVSKFLKSGASGFVISL 264 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~ 264 (921)
|+.++.++|+++|++..
T Consensus 265 ~i~~~a~~GvD~isvGs 281 (296)
T 1qap_A 265 TLREFAETGVDFISVGA 281 (296)
T ss_dssp HHHHHHHTTCSEEECSH
T ss_pred HHHHHHHcCCCEEEEeH
Confidence 99999999999997654
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0004 Score=81.02 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=77.8
Q ss_pred cHHHHHhCCCCeEEcCCC-CCC------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--C--C
Q 002437 150 RVDIAAAVNASGVLLSDQ-GLP------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--F--G 218 (921)
Q Consensus 150 ~~dla~~~~a~GvHL~~~-~l~------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--p--v 218 (921)
+.+.+.+.|+|+||+... ..+ +...|... |+ . .+++-++++.++++.+ .+.|+|||.+| | .
T Consensus 259 ~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~----~~-~--pvi~~~v~t~~~a~~l-~~aGad~I~vg~~~G~~ 330 (514)
T 1jcn_A 259 RLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKY----PH-L--QVIGGNVVTAAQAKNL-IDAGVDGLRVGMGCGSI 330 (514)
T ss_dssp HHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHC----TT-C--EEEEEEECSHHHHHHH-HHHTCSEEEECSSCSCC
T ss_pred HHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhC----CC-C--ceEecccchHHHHHHH-HHcCCCEEEECCCCCcc
Confidence 345667789999998222 222 23334443 23 2 2455578999999999 89999999774 3 2
Q ss_pred --CCC--CCCcc-------hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 219 --EGQ--KADVI-------ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 219 --Tk~--~~g~~-------~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|.. ..|.. ..++++..++||+|.|||. +.++.+++++||++|.+.++.+.
T Consensus 331 ~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~ 392 (514)
T 1jcn_A 331 CITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAA 392 (514)
T ss_dssp BTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred cccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHc
Confidence 222 23421 2566677799999999995 78999999999999998877655
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=7.8e-05 Score=79.84 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=54.9
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcC--------CCCEEEE
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNV--------KIPIFIM 241 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~--------~~Pv~ai 241 (921)
+...+|+..+ +. + .++++|++++|+.+| .+.|+|||.+++.+. ..+ +.+++.. ++|+.|.
T Consensus 188 ai~~~r~~~~---~~-~---~i~vev~tlee~~~A-~~aGaD~I~ld~~~~--~~l--~~~v~~l~~~~~g~~~v~I~AS 255 (294)
T 3c2e_A 188 AVKNARAVCG---FA-V---KIEVECLSEDEATEA-IEAGADVIMLDNFKG--DGL--KMCAQSLKNKWNGKKHFLLECS 255 (294)
T ss_dssp HHHHHHHHHC---TT-S---CEEEECSSSHHHHHH-HHHTCSEEECCC-------------------------CCEEEEE
T ss_pred HHHHHHHhcC---cC-C---eEEEecCCHHHHHHH-HHcCCCEEEECCCCH--HHH--HHHHHHhcccccCCCCeEEEEE
Confidence 4566777763 22 2 588999999999999 789999999988621 112 2222222 2899999
Q ss_pred cCCCccChHHHHHcCCcEEEEeecc
Q 002437 242 NASPLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 242 GGi~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
|||+++|+.++.++|+++|++.++.
T Consensus 256 GGIt~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 256 GGLNLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp CCCCC------CCCSCSEEECGGGT
T ss_pred CCCCHHHHHHHHHcCCCEEEEechh
Confidence 9999999999999999999876654
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00035 Score=77.81 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=66.7
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNI 527 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~ 527 (921)
+.+...+..+.+.+|++|+|+|+.++. ..+...+.+ .++|+++|+||+|+.+.....+.+.+++...... .+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~-~g~ 131 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQ-LGL 131 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHH-cCC
Confidence 567777888888999999999998642 222222222 2689999999999986532233343443333332 232
Q ss_pred CCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 528 ENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 528 ~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...+++++||+++ .|+++|.+.+.+..
T Consensus 132 ~~~~v~~iSA~~g---------------------------~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 132 KPEDVFLISAAKG---------------------------QGIAELADAIEYYR 158 (368)
T ss_dssp CCSEEEECCTTTC---------------------------TTHHHHHHHHHHHH
T ss_pred CcccEEEEeCCCC---------------------------cCHHHHHhhhhhhc
Confidence 2347999999987 68888888887653
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00025 Score=79.03 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=67.3
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCC
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIEN 529 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~ 529 (921)
+.+.+....+...+|++|+|+|+.++.......+.+.+ .++|+++|+||+|+.+.....+.+.+++...+.. .+...
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~-~g~~~ 135 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE-LGLCP 135 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT-TTCCC
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH-cCCCc
Confidence 45667777777899999999999876532111122222 2689999999999986532233344444433332 23222
Q ss_pred CeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 530 VTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 530 ~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.+++++||+++ .|+++|.+.+.+..
T Consensus 136 ~~v~~iSA~~g---------------------------~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 136 VDVCLVSAAKG---------------------------IGMAKVMEAINRYR 160 (369)
T ss_dssp SEEEECBTTTT---------------------------BTHHHHHHHHHHHH
T ss_pred ccEEEEECCCC---------------------------CCHHHHHHHHHhhc
Confidence 47999999987 68888888887654
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00024 Score=79.53 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=48.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCC----------CCCHHH-HHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADR----------PLTESE-VVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~----------~~t~~e-~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|. +.....+..+++.++++|||+|.++ ..+..+ ..++..+.. .+.|+++|+||
T Consensus 218 ~l~iwDtaGQ----e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK 293 (402)
T 1azs_C 218 NFHMFDVGGQ----RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNK 293 (402)
T ss_dssp EEEEEEECCS----GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEEC
T ss_pred cceecccchh----hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 4789999997 3445668889999999999999986 333333 245565543 34699999999
Q ss_pred CCCC
Q 002437 501 SDLY 504 (921)
Q Consensus 501 ~D~~ 504 (921)
+|+.
T Consensus 294 ~DL~ 297 (402)
T 1azs_C 294 QDLL 297 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9974
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=79.31 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=47.4
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCC----------CCCCHHH-HHHHHHhhh----cCCeEEEEEeC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISAD----------RPLTESE-VVFLRYTQQ----WKKKVVFVLNK 500 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~----------~~~t~~e-~~~l~~l~~----~~~~vivVlNK 500 (921)
.+.+|||+|.. .....+..+++.+|++|||+|.+ +..+..+ ..++..+.. .+.|+++|+||
T Consensus 184 ~l~iwDtaGQe----~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 184 VYRLFDVGGQR----NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp EEEEEEECCST----TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred eeEEEECCCch----hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEEC
Confidence 48999999973 34456788999999999999986 3322222 235555543 35799999999
Q ss_pred CCCC
Q 002437 501 SDLY 504 (921)
Q Consensus 501 ~D~~ 504 (921)
+|+.
T Consensus 260 ~DL~ 263 (354)
T 2xtz_A 260 FDIF 263 (354)
T ss_dssp HHHH
T ss_pred cchh
Confidence 9974
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=70.37 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=94.4
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCC----HHH-----------------HHHHHHHHHHHhhcCceEEe----c-----
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEAS----GKS-----------------VYEAACLLKSVVKDRALFLI----A----- 148 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~----~~~-----------------~~~~a~~l~~~~~~~~~~iv----n----- 148 (921)
..+.+.++...++|+++|.+=-|-.+ ... ..+.++++++.+- ..++++ |
T Consensus 31 ~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~Pv~lm~y~n~v~~~ 109 (268)
T 1qop_A 31 EQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHP-TIPIGLLMYANLVFNN 109 (268)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-SSCEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCEEEEEcccHHHHh
Confidence 46777888888999999999776532 222 2344555554411 245544 3
Q ss_pred ---CcHHHHHhCCCCeEEcCCCCCCH-HHHHHhcccCCCCccccCeEEEecCCHHHHHccc-ccCCCCEEEeCC--CCCC
Q 002437 149 ---ERVDIAAAVNASGVLLSDQGLPA-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNAS-SSEGADFLVCCF--GEGQ 221 (921)
Q Consensus 149 ---d~~dla~~~~a~GvHL~~~~l~~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~-~~~gaDyv~~gp--vTk~ 221 (921)
..++.+.+.|+||+.+....... ....+.....+.+ . + .+..-+++.+.+...+ ...|..|++ +. +|..
T Consensus 110 g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~-~-i-~l~~p~t~~~~i~~i~~~~~g~v~~~-s~~G~tG~ 185 (268)
T 1qop_A 110 GIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIA-P-I-FICPPNADDDLLRQVASYGRGYTYLL-SRSGVTGA 185 (268)
T ss_dssp CHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCE-E-E-CEECTTCCHHHHHHHHHHCCSCEEEE-SSSSCCCS
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCc-E-E-EEECCCCCHHHHHHHHhhCCCcEEEE-ecCCcCCC
Confidence 23455777899999997443211 1111111000011 1 1 1222234445443320 234444443 21 2332
Q ss_pred ----CCCc-c-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 222 ----KADV-I-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 222 ----~~g~-~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.. . .+.+++..++||++-|||+ ++++.++..+||+||.|-+|..+.
T Consensus 186 ~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp SSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred ccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 1222 2 4677777799999999998 999999999999999988887665
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00029 Score=78.21 Aligned_cols=75 Identities=8% Similarity=-0.013 Sum_probs=58.0
Q ss_pred HHcccccCCCCEEEeCCCC---CCCCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeecccccchHHHH
Q 002437 201 AFNASSSEGADFLVCCFGE---GQKADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSLFNDGVL 275 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvT---k~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~~~~~~~ 275 (921)
++.+ .+.|+||+.++..| ++..... ...+++.+++||++.|||+++++.++++.| |++|++.++.+.. +.+.
T Consensus 256 a~~l-~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~i~~--P~l~ 332 (365)
T 2gou_A 256 AALL-NKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIAN--PDLP 332 (365)
T ss_dssp HHHH-HHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEECCHHHHHC--TTHH
T ss_pred HHHH-HHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehhcHHHHhC--chHH
Confidence 4555 67899999998753 1221223 467888889999999999999999999998 9999999988865 4455
Q ss_pred Hhh
Q 002437 276 SQM 278 (921)
Q Consensus 276 ~~~ 278 (921)
+++
T Consensus 333 ~~~ 335 (365)
T 2gou_A 333 ERL 335 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.079 Score=59.68 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHH
Q 002437 364 PFLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLl 385 (921)
...|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4578899999999999999775
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00034 Score=77.63 Aligned_cols=75 Identities=8% Similarity=0.099 Sum_probs=57.3
Q ss_pred HHcccccCCCCEEEeCCCC---CCCCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeecccccchHHHH
Q 002437 201 AFNASSSEGADFLVCCFGE---GQKADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSLFNDGVL 275 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvT---k~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~~~~~~~ 275 (921)
++.+ ++.|+||+.++.-+ .++.... ...+++.+++||++.|||+++++.++++.| |++|++.++.+.. +.+.
T Consensus 257 a~~l-~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~gR~~l~~--P~~~ 333 (364)
T 1vyr_A 257 IEEL-AKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIAN--PDLV 333 (364)
T ss_dssp HHHH-HHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC--TTHH
T ss_pred HHHH-HHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEECHHHHhC--hhHH
Confidence 4455 67899999998632 1222222 467888899999999999999999999998 9999999988875 3455
Q ss_pred Hhh
Q 002437 276 SQM 278 (921)
Q Consensus 276 ~~~ 278 (921)
+++
T Consensus 334 ~~~ 336 (364)
T 1vyr_A 334 ARL 336 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00088 Score=70.71 Aligned_cols=175 Identities=9% Similarity=0.053 Sum_probs=105.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCH---------------------HHHHHHHHHHHHHhhcCceE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASG---------------------KSVYEAACLLKSVVKDRALF 145 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~---------------------~~~~~~a~~l~~~~~~~~~~ 145 (921)
--|+.... .+.+.+.+.+..+.++|+++|-|=-|-.++ ..+.+..+++++.. ..+++
T Consensus 23 i~yi~aGd-P~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~-~~~Pi 100 (271)
T 3nav_A 23 VPFVTIGD-PNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARN-PETPI 100 (271)
T ss_dssp EEEEETTS-SCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTSCE
T ss_pred EEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCE
Confidence 34554332 233467788888889999999987664321 13334444444331 13566
Q ss_pred EecC------------cHHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHHHHcccccCCC
Q 002437 146 LIAE------------RVDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGA 210 (921)
Q Consensus 146 ivnd------------~~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~ga 210 (921)
++-. ..+-|.+.|+|||.++ |+|..++ ++.....+-+ .+ .+-..+.+.+.+... .+.+.
T Consensus 101 vlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip--Dlp~ee~~~~~~~~~~~gl~-~I--~lvap~t~~eri~~i-~~~~~ 174 (271)
T 3nav_A 101 GLLMYANLVYARGIDDFYQRCQKAGVDSVLIA--DVPTNESQPFVAAAEKFGIQ-PI--FIAPPTASDETLRAV-AQLGK 174 (271)
T ss_dssp EEEECHHHHHHTCHHHHHHHHHHHTCCEEEET--TSCGGGCHHHHHHHHHTTCE-EE--EEECTTCCHHHHHHH-HHHCC
T ss_pred EEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHHcCCe-EE--EEECCCCCHHHHHHH-HHHCC
Confidence 6522 3556677899999996 5664332 2221100022 11 123333456667766 56677
Q ss_pred CEEEeCCC---CCCC----CCcc--hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 211 DFLVCCFG---EGQK----ADVI--ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 211 Dyv~~gpv---Tk~~----~g~~--~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+|+-+-+. |... ..+. ...+++..++||++-||| +++++.+....||+||.|-+|.++.
T Consensus 175 gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~~ 243 (271)
T 3nav_A 175 GYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKI 243 (271)
T ss_dssp SCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHHH
T ss_pred CeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 88776332 4322 1222 367777789999999999 5899998999999999888887765
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0028 Score=66.88 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=98.0
Q ss_pred cCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCH---------------------HHHHHHHHHHHHHhhcCceEEe---
Q 002437 92 PHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASG---------------------KSVYEAACLLKSVVKDRALFLI--- 147 (921)
Q Consensus 92 t~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~---------------------~~~~~~a~~l~~~~~~~~~~iv--- 147 (921)
|....+.+...+.++...++|+++|-+=-|-.++ ..+.+.++++++.+. +.++++
T Consensus 24 ~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~Pi~~m~y 102 (262)
T 2ekc_A 24 MVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFP-DIPFLLMTY 102 (262)
T ss_dssp ETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TSCEEEECC
T ss_pred cCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCCEEEEec
Confidence 4433333467778888889999999997765431 223344555554431 356666
Q ss_pred -c--------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc-CCCCccccCeEEEecCCHHHHHcc-cccCCCCEEEeC
Q 002437 148 -A--------ERVDIAAAVNASGVLLSDQGLPAIVARNTMKD-SMSESVVLPLVGRNVQTLDAAFNA-SSSEGADFLVCC 216 (921)
Q Consensus 148 -n--------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~-~~~~~~~~~~ig~S~h~~~e~~~A-~~~~gaDyv~~g 216 (921)
| ..++.|.+.|+||++++ |+|.......... .+.+..++.++ ..+++.+.+... ....|..|++ +
T Consensus 103 ~n~v~~~g~~~f~~~~~~aG~dgvii~--dl~~ee~~~~~~~~~~~gl~~i~l~-~p~t~~~rl~~ia~~a~gfiy~v-s 178 (262)
T 2ekc_A 103 YNPIFRIGLEKFCRLSREKGIDGFIVP--DLPPEEAEELKAVMKKYVLSFVPLG-APTSTRKRIKLICEAADEMTYFV-S 178 (262)
T ss_dssp HHHHHHHCHHHHHHHHHHTTCCEEECT--TCCHHHHHHHHHHHHHTTCEECCEE-CTTCCHHHHHHHHHHCSSCEEEE-S
T ss_pred CcHHHHhhHHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEe-CCCCCHHHHHHHHHhCCCCEEEE-e
Confidence 3 23456778999999997 5665444332100 00010111122 223444433321 0234555544 3
Q ss_pred C--CCCC--CCC---c-c-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 217 F--GEGQ--KAD---V-I-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 217 p--vTk~--~~g---~-~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
. +|.. +.. + . .+.+++..++||++-|||+ ++++.+ ...||+||.|-+|..+..
T Consensus 179 ~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~ 241 (262)
T 2ekc_A 179 VTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLA 241 (262)
T ss_dssp SCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHH
T ss_pred cCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhh
Confidence 2 2322 111 2 1 4677777899999999997 889999 677999999888877653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0021 Score=70.14 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=40.7
Q ss_pred ccEEEeCCCCChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
++.++||+|...... +...+. .. -..|-.++|+|+... ..-.+.++.+.+.....++++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~-ra-l~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~a~ 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIA-RV-TKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDADAR 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHH-HH-HCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGCSC
T ss_pred hhhHHhhccchhHHHHHHHHHHHHH-HH-hcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCccc
Confidence 578999999853222 112222 12 247889999997754 23334445454444556789999997544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0019 Score=69.83 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=39.6
Q ss_pred ccEEEeCCCCChhhhHHHH---HHHHhc-----CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQR---LTEEFV-----PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~---~~~~~l-----~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++|+||||.......... .....+ ..+|.+++|+|+... .......+.+.+.....-+|+||.|....
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~D~~~~ 264 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKLDGTAK 264 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECGGGCSC
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCCCCccc
Confidence 6899999997432221111 112222 358899999998722 22333333333333345578899998655
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0002 Score=74.10 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=64.1
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeC------CC---------------------CC--------C-CCCcc-hhhhhhc
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCC------FG---------------------EG--------Q-KADVI-ENSLFTN 233 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~g------pv---------------------Tk--------~-~~g~~-~~~~~~~ 233 (921)
+=+-|+|++|+.++ ..+|||+|.-= -| |+ . .++.+ ..++.+.
T Consensus 118 fv~~~~~l~EAlrr-i~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~ 196 (291)
T 3o07_A 118 FVCGAKDLGEALRR-INEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEK 196 (291)
T ss_dssp EEEEESSHHHHHHH-HHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred EEeeCCCHHHHHHH-HHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHc
Confidence 33457899999999 89999999841 11 10 0 12222 3677777
Q ss_pred CCCCEEEE--cCC-CccChHHHHHcCCcEEEEeecccccchHHHHHh
Q 002437 234 VKIPIFIM--NAS-PLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQ 277 (921)
Q Consensus 234 ~~~Pv~ai--GGi-~~~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~ 277 (921)
.++||++| ||| +++++..++++|++||.|.+++++.-.+...-+
T Consensus 197 ~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Ak 243 (291)
T 3o07_A 197 GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLAT 243 (291)
T ss_dssp TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHH
T ss_pred cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHH
Confidence 89999776 999 799999999999999999999998655544443
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0016 Score=68.67 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=102.5
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCC----CCHH-----------------HHHHHHHHHHHHhhcCceEE
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGE----ASGK-----------------SVYEAACLLKSVVKDRALFL 146 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~----~~~~-----------------~~~~~a~~l~~~~~~~~~~i 146 (921)
-|+.... .+.+.+.+.+..+.++|+++|.|=-|- .+.. .+.+..+++++.. ...+++
T Consensus 22 ~yi~aGd-P~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~-~~~Piv 99 (267)
T 3vnd_A 22 PFVTIGD-PSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQH-PDMPIG 99 (267)
T ss_dssp EEEETTS-SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCCEE
T ss_pred EEEeCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCEE
Confidence 3554332 223467788888889999999997543 2322 2233344444331 135665
Q ss_pred ecC------------cHHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCC
Q 002437 147 IAE------------RVDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGAD 211 (921)
Q Consensus 147 vnd------------~~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaD 211 (921)
+-. ..+-+.+.|+||+.++ |+|..+. ++.....+-+ .+ .+-..+.+.+.+... .+.+-+
T Consensus 100 lm~Y~npv~~~g~e~f~~~~~~aGvdgvii~--Dlp~ee~~~~~~~~~~~gl~-~i--~liaP~t~~eri~~i-~~~~~g 173 (267)
T 3vnd_A 100 LLLYANLVFANGIDEFYTKAQAAGVDSVLIA--DVPVEESAPFSKAAKAHGIA-PI--FIAPPNADADTLKMV-SEQGEG 173 (267)
T ss_dssp EEECHHHHHHHCHHHHHHHHHHHTCCEEEET--TSCGGGCHHHHHHHHHTTCE-EE--CEECTTCCHHHHHHH-HHHCCS
T ss_pred EEecCcHHHHhhHHHHHHHHHHcCCCEEEeC--CCCHhhHHHHHHHHHHcCCe-EE--EEECCCCCHHHHHHH-HHhCCC
Confidence 532 3556677899999996 5554322 2221100022 11 122333456666665 455556
Q ss_pred EEEe---CCCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 212 FLVC---CFGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 212 yv~~---gpvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
||-+ -++|.. +..+. .+.+++..++||++-|||+ ++++.+....||+||.|-+|.++.
T Consensus 174 fvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~~ 241 (267)
T 3vnd_A 174 YTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKI 241 (267)
T ss_dssp CEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred cEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 7665 233432 22232 3677777899999999995 899998999999999888877665
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0049 Score=67.03 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=39.9
Q ss_pred cccEEEeCCCCChhhhHH-HHH--HHHh----c-CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQ-QRL--TEEF----V-PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~-~~~--~~~~----l-~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+++||||||........ .++ .... + ..+|.+++|+++... .....-.+.+...-...=+|+||.|....
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~~~~i~GvVltk~d~~~~ 269 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSKVADVSGIILTKMDSTSK 269 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTTTSCCCEEEEECGGGCSC
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhhcCCCcEEEEeCCCCCCc
Confidence 369999999985432111 111 1112 2 358999999998843 33333333333322334479999997644
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0013 Score=72.27 Aligned_cols=110 Identities=18% Similarity=0.042 Sum_probs=71.2
Q ss_pred cHHHHHhCCCCeEEcCCC-CCC------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC--
Q 002437 150 RVDIAAAVNASGVLLSDQ-GLP------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG-- 218 (921)
Q Consensus 150 ~~dla~~~~a~GvHL~~~-~l~------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv-- 218 (921)
+.+.+.+.|+|-|.+... ..+ +...|... |+. .++.-.+.++++++.| .+.|||+|.+| |-
T Consensus 104 ~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~----~~~---~Vi~G~V~T~e~A~~a-~~aGaD~I~Vg~g~G~~ 175 (361)
T 3r2g_A 104 RAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLL----GSR---CIMAGNVATYAGADYL-ASCGADIIKAGIGGGSV 175 (361)
T ss_dssp HHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHH----TTC---EEEEEEECSHHHHHHH-HHTTCSEEEECCSSSSC
T ss_pred HHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhc----CCC---eEEEcCcCCHHHHHHH-HHcCCCEEEEcCCCCcC
Confidence 456666789998766211 112 22334443 331 1344368899999999 89999999985 32
Q ss_pred --CCC--CCCcc-h---hhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 219 --EGQ--KADVI-E---NSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 219 --Tk~--~~g~~-~---~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|.. ..|.. . .++++... ||+|-||| ++.++.+++++||++|.+-++.+.
T Consensus 176 ~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~ 233 (361)
T 3r2g_A 176 CSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAG 233 (361)
T ss_dssp HHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTT
T ss_pred ccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 111 22332 2 33333333 99999999 589999999999999988665544
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0019 Score=74.58 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=73.5
Q ss_pred HHHhCCCCeEEcCCCCC-C------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----C
Q 002437 153 IAAAVNASGVLLSDQGL-P------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----E 219 (921)
Q Consensus 153 la~~~~a~GvHL~~~~l-~------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----T 219 (921)
.+.+.|+|.|++..... + +...|... |+ . .+++-.+++.++++.+ .+.|||+|.+| |- |
T Consensus 236 ~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~----p~-~--~Vi~g~v~t~e~a~~l-~~aGaD~I~vg~g~Gs~~~t 307 (490)
T 4avf_A 236 ALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTF----PD-V--QVIGGNIATAEAAKAL-AEAGADAVKVGIGPGSICTT 307 (490)
T ss_dssp HHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHC----TT-S--EEEEEEECSHHHHHHH-HHTTCSEEEECSSCSTTCHH
T ss_pred HHhhcccceEEecccCCcchhHHHHHHHHHHHC----CC-c--eEEEeeeCcHHHHHHH-HHcCCCEEEECCCCCcCCCc
Confidence 34456899888854332 1 22334443 33 1 2566678999999999 89999999985 32 1
Q ss_pred C--CCCCcc----hhhhhh---cCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 220 G--QKADVI----ENSLFT---NVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 220 k--~~~g~~----~~~~~~---~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
. ...|.. ..++++ ...+||+|-||| ++.++.+++++||++|.+-++...
T Consensus 308 ~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~ 366 (490)
T 4avf_A 308 RIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAG 366 (490)
T ss_dssp HHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTT
T ss_pred cccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhc
Confidence 1 122322 233333 458999999999 799999999999999988766554
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0031 Score=63.35 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=61.5
Q ss_pred ccEEEeCCCCChh--hhHHHHHHHHhcCCCCEEEEEEeCCCCC---CHHHHHH-HHHhhh----cCCeEEEEEeCC-CCC
Q 002437 436 EMIIVDTPGTNVI--LQRQQRLTEEFVPRADLVLFVISADRPL---TESEVVF-LRYTQQ----WKKKVVFVLNKS-DLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~--~~~~~~~~~~~l~~aD~il~V~da~~~~---t~~e~~~-l~~l~~----~~~~vivVlNK~-D~~ 504 (921)
.+....+||-+.. -......++.|+..+|++|||+|+++.. ...+++- ...+.+ .+.|++|+.||. |+.
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 4566777863222 2345667999999999999999997542 2233221 222322 457999999996 564
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 505 QNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 505 ~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. -...++.+.+. +..+ . ....|+++||.+| .|+.+=.++|.+.+.
T Consensus 177 ~A-ms~~EI~e~L~--L~~l-~-R~W~Iq~csA~TG---------------------------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 177 KR-MPCFYLAHELH--LNLL-N-HPWLVQDTEAETL---------------------------TGFLNGIEWILEEVE 222 (227)
T ss_dssp CB-CCHHHHHHHTT--GGGG-C-SCEEEEEEETTTC---------------------------TTHHHHHHHHTTTTT
T ss_pred CC-CCHHHHHHHcC--CcCC-C-CCEEEEEeECCCC---------------------------cCHHHHHHHHHHHHH
Confidence 32 12233333322 2222 2 4578999999987 577776677766655
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0032 Score=67.96 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=42.1
Q ss_pred ccEEEeCCCCChhhhH--------HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQR--------QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~--------~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
++.++||+|....... ...+.+......+.+++++|+... ..-.+.+..+.+.....++++||.|....
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~~~~t~iivTh~d~~a~ 262 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVGLTGVIVTKLDGTAK 262 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHCCSEEEEECTTSSCC
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHHcCCcEEEEECCccccc
Confidence 4779999997432111 112223334678889999998754 23344455554433446789999987644
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.002 Score=72.57 Aligned_cols=75 Identities=27% Similarity=0.209 Sum_probs=55.2
Q ss_pred EecCCHHHHHcccccCCCCEEEeCCC--C------CCCCCc---c-hhhh---hhcCCCCEEEEcCCC-ccChHHHHHcC
Q 002437 193 RNVQTLDAAFNASSSEGADFLVCCFG--E------GQKADV---I-ENSL---FTNVKIPIFIMNASP-LVDVSKFLKSG 256 (921)
Q Consensus 193 ~S~h~~~e~~~A~~~~gaDyv~~gpv--T------k~~~g~---~-~~~~---~~~~~~Pv~aiGGi~-~~~~~~~~~~G 256 (921)
-.+++.+++..| .+.|+|||.+|.- + ....|. . ...+ +...++||+|.|||. ++++.+++++|
T Consensus 200 ~~v~~~~~a~~a-~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~G 278 (404)
T 1eep_A 200 GNIVTKEAALDL-ISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAG 278 (404)
T ss_dssp EEECSHHHHHHH-HTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHT
T ss_pred cCCCcHHHHHHH-HhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcC
Confidence 367889999999 8999999999521 1 111122 1 2233 335689999999996 89999999999
Q ss_pred CcEEEEeecccc
Q 002437 257 ASGFVISLEDLS 268 (921)
Q Consensus 257 a~gva~~~a~~~ 268 (921)
|++|.+.++.+.
T Consensus 279 Ad~V~iG~~~l~ 290 (404)
T 1eep_A 279 ADSVMIGNLFAG 290 (404)
T ss_dssp CSEEEECHHHHT
T ss_pred CCHHhhCHHHhc
Confidence 999988666543
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0004 Score=73.45 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=50.0
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 002437 454 RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIY 533 (921)
Q Consensus 454 ~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~ 533 (921)
..+...+..+|+|++|+|+..|.+..... +. +. ++|.++|+||+|+.+. +..+...+... . .+.++
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~-ll--~k~~iivlNK~DL~~~-~~~~~~~~~~~----~----~g~~v- 78 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYG-VD-FS--RKETIILLNKVDIADE-KTTKKWVEFFK----K----QGKRV- 78 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTT-SC-CT--TSEEEEEEECGGGSCH-HHHHHHHHHHH----H----TTCCE-
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChH-HH-hc--CCCcEEEEECccCCCH-HHHHHHHHHHH----H----cCCeE-
Confidence 45778889999999999999887654322 12 22 8999999999999853 33333333222 1 23567
Q ss_pred Eecccch
Q 002437 534 PVSARST 540 (921)
Q Consensus 534 ~vSA~~~ 540 (921)
++||+.+
T Consensus 79 ~iSa~~~ 85 (262)
T 3cnl_A 79 ITTHKGE 85 (262)
T ss_dssp EECCTTS
T ss_pred EEECCCC
Confidence 9999876
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0034 Score=65.31 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccC-CCCEEEeCCC--CCCCCCcc-
Q 002437 151 VDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSE-GADFLVCCFG--EGQKADVI- 226 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~-gaDyv~~gpv--Tk~~~g~~- 226 (921)
+..|...|||+|-|--..++....+.+......-+. .+=+-|||.+|+.+| ... |+|+|++-+- +....++.
T Consensus 116 i~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl---~~lvEv~~~eE~~~A-~~l~g~~iIGinnr~l~t~~~d~~~ 191 (251)
T 1i4n_A 116 VKLASSVGADAILIIARILTAEQIKEIYEAAEELGM---DSLVEVHSREDLEKV-FSVIRPKIIGINTRDLDTFEIKKNV 191 (251)
T ss_dssp HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTC---EEEEEECSHHHHHHH-HTTCCCSEEEEECBCTTTCCBCTTH
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCC---eEEEEeCCHHHHHHH-HhcCCCCEEEEeCcccccCCCCHHH
Confidence 334566899999886666664333333210000001 345577999999999 899 9999999875 22223343
Q ss_pred hhhhhhcC--CCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTNV--KIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~~--~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+...+ .+++++-|||+ ++++..+.++ ++||.|-.+.|+.
T Consensus 192 ~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~ 236 (251)
T 1i4n_A 192 LWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKA 236 (251)
T ss_dssp HHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHC
T ss_pred HHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCC
Confidence 34566655 47899999995 9999999999 9999988888875
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0023 Score=65.88 Aligned_cols=169 Identities=14% Similarity=0.077 Sum_probs=100.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeC--CCCCHHHHHHHHHHHHHHhhc-CceEEe----cCcHHHHHhCCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG--GEASGKSVYEAACLLKSVVKD-RALFLI----AERVDIAAAVNA 159 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~--k~~~~~~~~~~a~~l~~~~~~-~~~~iv----nd~~dla~~~~a 159 (921)
+++.|..... ..+.++.+. ..+++++.+-- ++.+. .++++.+++.+.. ..++++ .+...-+.+.|+
T Consensus 4 ~v~~v~~~~~-~~~a~~~~~---~~~~dlvl~D~~~p~~~g---~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga 76 (237)
T 3cwo_X 4 RVLIVDDATN-GREAVEKYK---ELKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGA 76 (237)
T ss_dssp CEEEEECCCS-SSTTHHHHH---HHCCSCEEEECCSTTSSH---HHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTC
T ss_pred EEEEEEECCC-HHHHHHHHH---hcCCCEEEEeCCCCCCCH---HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCH
Confidence 4566655322 223344443 45677666643 44443 5677788877765 667776 345566777899
Q ss_pred CeEEcCC---C-CCCHHHHHHhcccCCCCccccCeEEE-------------------ecCCHHH-HHcccccCCCCEEEe
Q 002437 160 SGVLLSD---Q-GLPAIVARNTMKDSMSESVVLPLVGR-------------------NVQTLDA-AFNASSSEGADFLVC 215 (921)
Q Consensus 160 ~GvHL~~---~-~l~~~~~r~~~~~~~~~~~~~~~ig~-------------------S~h~~~e-~~~A~~~~gaDyv~~ 215 (921)
++++... . +......+..++ .. .+ .+.. +..++.+ +.+. ...|+.++++
T Consensus 77 ~~~l~kp~~~~~~~l~~~i~~~~~---~~-~~--~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~-~~~~~~~vli 149 (237)
T 3cwo_X 77 KDFIVNTAAVENPSLITQIAQTFG---SQ-AV--VVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEV-EKRGAGEILL 149 (237)
T ss_dssp CEEEESHHHHHCTHHHHHHHHHHT---GG-GE--EEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHH-HHHTCSEEEE
T ss_pred HheEeCCcccChHHHHHHHHHHhC---CC-ce--EEEeeecccCCcEEEEEeCCccccccCHHHHHHHH-hhcCCCeEEE
Confidence 9999863 1 111223344443 12 11 1111 1124433 4454 5678887766
Q ss_pred CCC--CCCCCCcc---hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 216 CFG--EGQKADVI---ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 216 gpv--Tk~~~g~~---~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
-.+ +....|+. ..++....++|++|+||++ ++++.++.++|++|+++.+|....
T Consensus 150 ~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 150 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred EecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 544 22223332 4677777899999999997 788999999999999988887544
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0013 Score=69.91 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=62.5
Q ss_pred CHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc--hhhhhh-cCCCCEEEEcCCCc
Q 002437 170 PAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI--ENSLFT-NVKIPIFIMNASPL 246 (921)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--~~~~~~-~~~~Pv~aiGGi~~ 246 (921)
.+..+|... |.. .|.+.|+|.+++.+| .+.|+|||.+..++. ..+. ...+.. ..++|+.|.|||++
T Consensus 184 av~~ar~~~----~~~----~I~Vev~t~eea~ea-l~aGaD~I~LDn~~~--~~~~~~v~~l~~~~~~v~ieaSGGIt~ 252 (284)
T 1qpo_A 184 ALRAVRNAA----PDL----PCEVEVDSLEQLDAV-LPEKPELILLDNFAV--WQTQTAVQRRDSRAPTVMLESSGGLSL 252 (284)
T ss_dssp HHHHHHHHC----TTS----CEEEEESSHHHHHHH-GGGCCSEEEEETCCH--HHHHHHHHHHHHHCTTCEEEEESSCCT
T ss_pred HHHHHHHhC----CCC----CEEEEeCCHHHHHHH-HHcCCCEEEECCCCH--HHHHHHHHHhhccCCCeEEEEECCCCH
Confidence 345667765 442 488899999999999 899999999987622 1111 122222 12689999999999
Q ss_pred cChHHHHHcCCcEEEEee
Q 002437 247 VDVSKFLKSGASGFVISL 264 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~ 264 (921)
+|+.++.++|+++|.+..
T Consensus 253 ~~i~~~a~tGVD~isvG~ 270 (284)
T 1qpo_A 253 QTAATYAETGVDYLAVGA 270 (284)
T ss_dssp TTHHHHHHTTCSEEECGG
T ss_pred HHHHHHHhcCCCEEEECH
Confidence 999999999999997443
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0015 Score=68.78 Aligned_cols=78 Identities=15% Similarity=0.049 Sum_probs=59.9
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhc--CCCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTN--VKIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~--~~~Pv~aiGGi~~~ 247 (921)
...+|... |. + -|.+.|+|++|+.+| .+.|+|+|.|-.. .++ .+++.+. -++++.|.|||+++
T Consensus 189 v~~ar~~~----~~-~---~IeVEv~tl~ea~eA-l~aGaD~I~LDn~-----~~~~l~~av~~~~~~v~ieaSGGIt~~ 254 (287)
T 3tqv_A 189 VTKAKKLD----SN-K---VVEVEVTNLDELNQA-IAAKADIVMLDNF-----SGEDIDIAVSIARGKVALEVSGNIDRN 254 (287)
T ss_dssp HHHHHHHC----TT-S---CEEEEESSHHHHHHH-HHTTCSEEEEESC-----CHHHHHHHHHHHTTTCEEEEESSCCTT
T ss_pred HHHHHhhC----CC-C---cEEEEeCCHHHHHHH-HHcCCCEEEEcCC-----CHHHHHHHHHhhcCCceEEEECCCCHH
Confidence 34556653 55 2 478899999999999 8999999999654 122 2333332 27899999999999
Q ss_pred ChHHHHHcCCcEEEE
Q 002437 248 DVSKFLKSGASGFVI 262 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~ 262 (921)
|+.++.++|+++|.+
T Consensus 255 ~i~~~a~tGVD~Isv 269 (287)
T 3tqv_A 255 SIVAIAKTGVDFISV 269 (287)
T ss_dssp THHHHHTTTCSEEEC
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999964
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0057 Score=65.77 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=39.7
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcC--CCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVP--RADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~--~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++|+||||...............+. ..|.+++|+|+... ..+. ++...+... ...-+|+||.|....
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l-~~~giVltk~D~~~~ 254 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV-PVNQYIFTKIDETTS 254 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS-CCCEEEEECTTTCSC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC-CCCEEEEeCCCcccc
Confidence 69999999987543332222333443 46788999988753 2222 222223222 234567799998754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.004 Score=70.99 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=40.2
Q ss_pred ccEEEeCCCCChhhhHH----H---HHHHHhc-CCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQ----Q---RLTEEFV-PRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~----~---~~~~~~l-~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||+|........ . ..++.+. ...+-+++|+|+..+ ......++.++..-....+|+||.|....
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIlTKLD~tak 453 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLTKLDGTAK 453 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEEECGGGCSC
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEEEcCCCccc
Confidence 68999999984322111 1 1111121 235789999998744 33344455555433345679999997544
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0015 Score=76.63 Aligned_cols=163 Identities=10% Similarity=0.012 Sum_probs=105.1
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHH---HHHHHHHHHHHHhhc-CceEE----ecCc-------------HHHHHhCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGK---SVYEAACLLKSVVKD-RALFL----IAER-------------VDIAAAVN 158 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~---~~~~~a~~l~~~~~~-~~~~i----vnd~-------------~dla~~~~ 158 (921)
+..+...+..+.|++.+++=+=+.... ........+..+++. ..+++ |.+. .+-....|
T Consensus 281 dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aG 360 (555)
T 1jvn_A 281 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 360 (555)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcC
Confidence 455667777788997776644221100 111133445566665 77888 4444 55566789
Q ss_pred CCeEEcCCCCCC-----------------HHHHHHhcccCCCCccccCeEEEecC-------------------------
Q 002437 159 ASGVLLSDQGLP-----------------AIVARNTMKDSMSESVVLPLVGRNVQ------------------------- 196 (921)
Q Consensus 159 a~GvHL~~~~l~-----------------~~~~r~~~~~~~~~~~~~~~ig~S~h------------------------- 196 (921)
||-|=++..... +..+...+| .+ .+ .+++.|-
T Consensus 361 ad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g---~~-~i--vv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (555)
T 1jvn_A 361 ADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYG---AQ-AV--VISVDPKRVYVNSQADTKNKVFETEYPGPNGE 434 (555)
T ss_dssp CSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHC---GG-GE--EEEECEEEEEESSGGGCSSCCEECSSCCTTCC
T ss_pred CCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhC---CC-cE--EEEEEccccccccccccccccccccccCCCCC
Confidence 999999854311 222333333 22 22 3555541
Q ss_pred -------------------CHHHHHcccccCCCCEEEeCCCCC----CCCCcc-hhhhhhcCCCCEEEEcCC-CccChHH
Q 002437 197 -------------------TLDAAFNASSSEGADFLVCCFGEG----QKADVI-ENSLFTNVKIPIFIMNAS-PLVDVSK 251 (921)
Q Consensus 197 -------------------~~~e~~~A~~~~gaDyv~~gpvTk----~~~g~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~ 251 (921)
..+.++++ ++.|||++++-.+++ ..+.++ .+.+++.+++||+|-||| +++++..
T Consensus 435 ~~~~~~v~~~Gw~~~~~~~~~e~a~~~-~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~ 513 (555)
T 1jvn_A 435 KYCWYQCTIKGGRESRDLGVWELTRAC-EALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEE 513 (555)
T ss_dssp CEEEEEEEETTTTEEEEEEHHHHHHHH-HHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHH
T ss_pred cceeEEEEEecCccCCCCCHHHHHHHH-HHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHH
Confidence 24667777 899999999977733 233343 478888899999999999 6899999
Q ss_pred HHH-cCCcEEEEeeccccc
Q 002437 252 FLK-SGASGFVISLEDLSL 269 (921)
Q Consensus 252 ~~~-~Ga~gva~~~a~~~~ 269 (921)
+.+ +|++||.+.+|....
T Consensus 514 ~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 514 AFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHHHSCCSEEEESHHHHTT
T ss_pred HHHhcCChHHHHHHHHHcC
Confidence 998 899999887776654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0054 Score=69.14 Aligned_cols=69 Identities=25% Similarity=0.163 Sum_probs=40.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHH--HhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTE--EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~--~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||............. ..+-.+|.+++|+|+... ..-....+.....-...-+|+||.|....
T Consensus 182 DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 182 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCCEEEEESGGGCSS
T ss_pred CEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCceEEEEeCcCCccc
Confidence 6899999997543221111111 112368999999998743 23333344444333346679999997644
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.016 Score=61.22 Aligned_cols=160 Identities=13% Similarity=0.164 Sum_probs=90.7
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCH---------------------HHHHHHHHHHHHHhhcCceEEecCc-------
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASG---------------------KSVYEAACLLKSVVKDRALFLIAER------- 150 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~---------------------~~~~~~a~~l~~~~~~~~~~ivnd~------- 150 (921)
+...+.+....++ +++|-+=-|-.++ ....+.++++++.. ..++++-.+
T Consensus 30 ~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~--~~Pii~m~y~n~v~~~ 106 (271)
T 1ujp_A 30 EGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALT--EKPLFLMTYLNPVLAW 106 (271)
T ss_dssp HHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--CSCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCEEEEecCcHHHHh
Confidence 3555666666566 9998886654322 22334444444432 567777333
Q ss_pred -----HHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHH--HHcccccCCCCEEEeCC--C
Q 002437 151 -----VDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDA--AFNASSSEGADFLVCCF--G 218 (921)
Q Consensus 151 -----~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e--~~~A~~~~gaDyv~~gp--v 218 (921)
++.|.+.|+||+-+.+ +|.... .+.....+-+ .+.+++- +.+.+. ...+ ...|.+|++ +. +
T Consensus 107 g~~~f~~~~~~aG~dGviv~D--l~~ee~~~~~~~~~~~gl~--~i~liap-~s~~eri~~ia~-~~~gfiy~v-s~~G~ 179 (271)
T 1ujp_A 107 GPERFFGLFKQAGATGVILPD--LPPDEDPGLVRLAQEIGLE--TVFLLAP-TSTDARIATVVR-HATGFVYAV-SVTGV 179 (271)
T ss_dssp CHHHHHHHHHHHTCCEEECTT--CCGGGCHHHHHHHHHHTCE--EECEECT-TCCHHHHHHHHT-TCCSCEEEE-CC---
T ss_pred hHHHHHHHHHHcCCCEEEecC--CCHHHHHHHHHHHHHcCCc--eEEEeCC-CCCHHHHHHHHH-hCCCCEEEE-ecCcc
Confidence 3346678999999974 443222 1111000011 1123322 233332 2223 457777776 33 2
Q ss_pred CCCC----CCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 219 EGQK----ADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 219 Tk~~----~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
|... ..+. ...+++..++||++-|||+ ++++.++ .||+||.|-+|..+..
T Consensus 180 TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~ 236 (271)
T 1ujp_A 180 TGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRAL 236 (271)
T ss_dssp ---------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHH
T ss_pred cCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhccc
Confidence 4332 1221 3677777899999999997 9999997 8999999988887764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0064 Score=65.39 Aligned_cols=69 Identities=25% Similarity=0.187 Sum_probs=40.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++|+||||............... .-.+|.+++|+|+... ....+..+.+...-...-+|+||+|....
T Consensus 182 D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~givlnk~d~~~~ 252 (295)
T 1ls1_A 182 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (295)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGGCSS
T ss_pred CEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCCEEEEECCCCCcc
Confidence 699999998754432221111111 1258889999998742 33333344443322335579999997654
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0028 Score=63.86 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=45.5
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc-----CCeEEEEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW-----KKKVVFVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~-----~~~vivVlNK~D~~ 504 (921)
+++|||||+..+ ..+...+..+|.+|+|+..+... ..-..+++.+... +.++.+|+||+|..
T Consensus 77 D~viiD~~~~~~------~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 77 DFAIVDGAGSLS------VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SEEEEECCSSSS------HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CEEEEECCCCCC------HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 689999998642 23455566799999999988766 5555666666543 35779999999954
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0058 Score=68.00 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=73.8
Q ss_pred CcHHHHHhCCCCeEEcC-CCCCCH---HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC------
Q 002437 149 ERVDIAAAVNASGVLLS-DQGLPA---IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG------ 218 (921)
Q Consensus 149 d~~dla~~~~a~GvHL~-~~~l~~---~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv------ 218 (921)
++++.+.+.|+|-|-|. ....+. ...+.+... -+ . .++.-.+++.++++.+ .+.|||+|.+|+-
T Consensus 147 e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~--~~-i--~Vi~g~V~t~e~A~~a-~~aGAD~I~vG~g~Gs~~~ 220 (400)
T 3ffs_A 147 ERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK--MN-I--DVIVGNVVTEEATKEL-IENGADGIKVGIGPGSICT 220 (400)
T ss_dssp HHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTT--CC-C--EEEEEEECSHHHHHHH-HHTTCSEEEECC-------
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhc--CC-C--eEEEeecCCHHHHHHH-HHcCCCEEEEeCCCCcCcc
Confidence 45667777899988763 222332 222332210 01 1 2444578999999999 8999999999731
Q ss_pred CCC--CCCcc----hhhhh---hcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 219 EGQ--KADVI----ENSLF---TNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 219 Tk~--~~g~~----~~~~~---~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|.. ..|.. ..+++ +..++||+|-||| ++.++..++++||++|.+-++-+.
T Consensus 221 tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~ 280 (400)
T 3ffs_A 221 TRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAG 280 (400)
T ss_dssp --CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTT
T ss_pred cccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhc
Confidence 222 12222 23333 3468999999999 589999999999999988655544
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0018 Score=69.80 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=54.4
Q ss_pred hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHH-H-HHHHHhhhcCCeEEEEEeCCCCCCChH---HHHHHHHHHHHHHHHh
Q 002437 450 QRQQRLTEEFVPRADLVLFVISADRPLTESE-V-VFLRYTQQWKKKVVFVLNKSDLYQNAF---ELEEAISFVKENTMKL 524 (921)
Q Consensus 450 ~~~~~~~~~~l~~aD~il~V~da~~~~t~~e-~-~~l~~l~~~~~~vivVlNK~D~~~~~~---~~~~v~~~~~~~~~~~ 524 (921)
++...+.+..+.++|.+++|+|+..|..... . ++|..+...++|.++|+||+|+.++.+ .++.+.+.+ ...
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y----~~~ 149 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY----RNI 149 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH----HHH
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH----HhC
Confidence 3333445557899999999999997654443 2 244444567899999999999986632 123332222 221
Q ss_pred hCCCCCeEEEecccch
Q 002437 525 LNIENVTIYPVSARST 540 (921)
Q Consensus 525 ~~~~~~~v~~vSA~~~ 540 (921)
+.+++++||..+
T Consensus 150 ----g~~v~~~sa~~~ 161 (307)
T 1t9h_A 150 ----GYDVYLTSSKDQ 161 (307)
T ss_dssp ----TCCEEECCHHHH
T ss_pred ----CCeEEEEecCCC
Confidence 358999999876
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.001 Score=71.82 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=21.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
.-.++|+|++|+|||||+|+|.|...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc
Confidence 45899999999999999999998653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0026 Score=69.94 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
-.++|+|++|+|||||+|+|+|...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4789999999999999999999754
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0073 Score=69.96 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=73.2
Q ss_pred HHHhCCCCeEEcCCCCCC-------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC------C
Q 002437 153 IAAAVNASGVLLSDQGLP-------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG------E 219 (921)
Q Consensus 153 la~~~~a~GvHL~~~~l~-------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv------T 219 (921)
...+.|+|-|.+....-. +...|... |+. .+++..+.+.++++.| .+.|+|+|.+|.- |
T Consensus 263 aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~----~~~---~vi~g~v~t~e~a~~~-~~aGad~i~vg~g~gsi~~~ 334 (511)
T 3usb_A 263 ALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKY----PSL---NIIAGNVATAEATKAL-IEAGANVVKVGIGPGSICTT 334 (511)
T ss_dssp HHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHC----TTS---EEEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTCCH
T ss_pred HHHhhccceEEecccccchhhhhhHHHHHHHhC----CCc---eEEeeeeccHHHHHHH-HHhCCCEEEECCCCcccccc
Confidence 345678999988654421 22334443 331 2566688999999999 8999999998642 1
Q ss_pred C--CCCCcc----h---hhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccc
Q 002437 220 G--QKADVI----E---NSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 220 k--~~~g~~----~---~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~ 267 (921)
. ...|.. . .+.++...+||+|-||| ++.++.+++++||++|.+-++..
T Consensus 335 ~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~ 392 (511)
T 3usb_A 335 RVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFA 392 (511)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred ccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHh
Confidence 1 122222 1 23345567999999999 68999999999999998765543
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0067 Score=70.00 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=71.7
Q ss_pred HHhCCCCeEEcCCCCCC-------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CC
Q 002437 154 AAAVNASGVLLSDQGLP-------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EG 220 (921)
Q Consensus 154 a~~~~a~GvHL~~~~l~-------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk 220 (921)
+.+.|+|.|++....-. +...|... |+ . .+++-.+.+.++++.+ .+.|||+|.+| |- |.
T Consensus 239 l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~----p~-~--~Vi~g~v~t~e~a~~l-~~aGaD~I~Vg~g~Gs~~~tr 310 (496)
T 4fxs_A 239 LVEAGVDVLLIDSSHGHSEGVLQRIRETRAAY----PH-L--EIIGGNVATAEGARAL-IEAGVSAVKVGIGPGSICTTR 310 (496)
T ss_dssp HHHTTCSEEEEECSCTTSHHHHHHHHHHHHHC----TT-C--CEEEEEECSHHHHHHH-HHHTCSEEEECSSCCTTBCHH
T ss_pred HHhccCceEEeccccccchHHHHHHHHHHHHC----CC-c--eEEEcccCcHHHHHHH-HHhCCCEEEECCCCCcCcccc
Confidence 33468888888544321 22334443 33 2 3556678999999999 89999999985 43 11
Q ss_pred --CCCCcc----hhhhh---hcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 221 --QKADVI----ENSLF---TNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 221 --~~~g~~----~~~~~---~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
...|.. ..+++ +...+||+|-||| ++.++.+++++||++|.+-++...
T Consensus 311 ~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~ 368 (496)
T 4fxs_A 311 IVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAG 368 (496)
T ss_dssp HHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred cccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhc
Confidence 122222 23333 3458999999999 588999999999999987655444
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0043 Score=66.34 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=60.1
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhc--CCCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTN--VKIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~--~~~Pv~aiGGi~~~ 247 (921)
...+|... |+. .|.+.|++++|+.+| .+.|+|+|.|-.. .++ .+++.+. -++++.|.|||+++
T Consensus 222 v~~ar~~~----p~~----kIeVEVdtldea~eA-l~aGaD~I~LDn~-----~~~~l~~av~~l~~~v~ieaSGGIt~~ 287 (320)
T 3paj_A 222 ISTAKQLN----PGK----PVEVETETLAELEEA-ISAGADIIMLDNF-----SLEMMREAVKINAGRAALENSGNITLD 287 (320)
T ss_dssp HHHHHHHS----TTS----CEEEEESSHHHHHHH-HHTTCSEEEEESC-----CHHHHHHHHHHHTTSSEEEEESSCCHH
T ss_pred HHHHHHhC----CCC----eEEEEECCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhCCCCeEEEECCCCHH
Confidence 34567665 552 477899999999999 8999999999654 222 2333332 37899999999999
Q ss_pred ChHHHHHcCCcEEEE
Q 002437 248 DVSKFLKSGASGFVI 262 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~ 262 (921)
|+.++.++|+++|.+
T Consensus 288 ~I~~~a~tGVD~isv 302 (320)
T 3paj_A 288 NLKECAETGVDYISV 302 (320)
T ss_dssp HHHHHHTTTCSEEEC
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999954
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0099 Score=64.10 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
...++++|++|+|||||+|+|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578999999999999999999 53
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0039 Score=69.34 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=56.3
Q ss_pred HHcccccCCCCEEEeCCCC--CCCC--Ccc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeecccccchHHH
Q 002437 201 AFNASSSEGADFLVCCFGE--GQKA--DVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSLFNDGV 274 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvT--k~~~--g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~~~~~~ 274 (921)
++.+ ++.|+||+.++.-+ ...+ .+. ...+++.+++||++.|||+++++.++++.| |++|++.++.+.. +.+
T Consensus 261 a~~l-e~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~--P~l 337 (377)
T 2r14_A 261 AGEL-DRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIAN--PDL 337 (377)
T ss_dssp HHHH-HHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC--TTH
T ss_pred HHHH-HHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCceEEeecHHHHhC--chH
Confidence 4455 67899999997632 1111 233 467888899999999999999999999998 9999999998865 345
Q ss_pred HHhh
Q 002437 275 LSQM 278 (921)
Q Consensus 275 ~~~~ 278 (921)
.+++
T Consensus 338 ~~k~ 341 (377)
T 2r14_A 338 PERF 341 (377)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0078 Score=64.92 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
-.++++|++|+|||||+|+|.|...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4789999999999999999999753
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0079 Score=61.10 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=44.2
Q ss_pred ccEEEeCCCC-ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh-cCCeEEEEEeCCCCCC
Q 002437 436 EMIIVDTPGT-NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ-WKKKVVFVLNKSDLYQ 505 (921)
Q Consensus 436 ~l~lvDTPG~-~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~-~~~~vivVlNK~D~~~ 505 (921)
++++||||+. .+. .+...+..+|.+|+++..+......-..+++.+.. .+.++.+|+|++|...
T Consensus 69 D~viiD~p~~~~~~------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 69 QNIVIDTQARPEDE------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEEECCCSSS------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred CEEEEeCCCCcCcH------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 6899999985 322 24456678999999998774322233345566655 2567899999999764
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0078 Score=63.75 Aligned_cols=79 Identities=18% Similarity=0.068 Sum_probs=58.5
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhh--cCCCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFT--NVKIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~--~~~~Pv~aiGGi~~~ 247 (921)
...+|... |+ + -|-+.|+|++|+.+| .+.|+|+|.|-.. .++ .+++.+ .-++++.|.|||+++
T Consensus 200 v~~~r~~~----p~-~---~ieVEvdtlde~~eA-l~aGaD~I~LDn~-----~~~~l~~av~~i~~~v~ieaSGGI~~~ 265 (298)
T 3gnn_A 200 LDAAFALN----AE-V---PVQIEVETLDQLRTA-LAHGARSVLLDNF-----TLDMMRDAVRVTEGRAVLEVSGGVNFD 265 (298)
T ss_dssp HHHHHHHC-------C---CCEEEESSHHHHHHH-HHTTCEEEEEESC-----CHHHHHHHHHHHTTSEEEEEESSCSTT
T ss_pred HHHHHHhC----CC-C---CEEEEeCCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHHhCCCCeEEEEcCCCHH
Confidence 34556655 44 2 467889999999999 8999999999654 122 232222 236889999999999
Q ss_pred ChHHHHHcCCcEEEEe
Q 002437 248 DVSKFLKSGASGFVIS 263 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~ 263 (921)
|+.++.++|+++|.+.
T Consensus 266 ~i~~~a~tGVD~isvG 281 (298)
T 3gnn_A 266 TVRAIAETGVDRISIG 281 (298)
T ss_dssp THHHHHHTTCSEEECG
T ss_pred HHHHHHHcCCCEEEEC
Confidence 9999999999999653
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.033 Score=59.45 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=46.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQ 505 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~ 505 (921)
+++|||||+...... +......+|.+|+|+..+......-...++.+...+.+ +-+|+|++|...
T Consensus 203 D~VIIDtpp~~~~~d-----a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 203 DLVLIDTPPILAVTD-----AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp SEEEEECCCTTTCTH-----HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CEEEEcCCCCcchHH-----HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 689999999753321 33456789999999998865544445667777776655 458999998654
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.037 Score=59.45 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=46.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~ 504 (921)
+++|||||+...... ..-....+|.+|+|+..+......-...++.+...+.+++ +|+|++|..
T Consensus 215 D~VIIDtpp~~~~~d-----~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVSD-----AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCTH-----HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CEEEEcCCCCchhHH-----HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 689999999753211 2224467999999999887655565667777777666654 889999865
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=5.7 Score=47.55 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=13.2
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 002437 889 LKLDRLSE----IQDELSNVQEKIQTLQVE 914 (921)
Q Consensus 889 ~~~~~l~~----~~~~l~~~~~~~~~l~~~ 914 (921)
.+.++|+. ..++|+.++.+++.+.+.
T Consensus 662 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 691 (695)
T 2j69_A 662 SEFNRLKNLQEDVIAQLQKIEAAYSNLLAY 691 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555 445555555555555543
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.041 Score=63.62 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=54.6
Q ss_pred EecCCHHHHHcccccCCCCEEEeCCC--CC------CCCCcc----h---hhhhhcCCCCEEEEcCC-CccChHHHHHcC
Q 002437 193 RNVQTLDAAFNASSSEGADFLVCCFG--EG------QKADVI----E---NSLFTNVKIPIFIMNAS-PLVDVSKFLKSG 256 (921)
Q Consensus 193 ~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk------~~~g~~----~---~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G 256 (921)
-.+.+.+++..+ .+.|+|+|.+|.- +- ...|.. . ...+...++||+|-||| ++.++.++++.|
T Consensus 284 g~~~t~e~a~~l-~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~G 362 (494)
T 1vrd_A 284 GNVATPEGTEAL-IKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAG 362 (494)
T ss_dssp EEECSHHHHHHH-HHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTT
T ss_pred CCcCCHHHHHHH-HHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcC
Confidence 357889999998 8999999999642 10 011211 1 23334468999999999 789999999999
Q ss_pred CcEEEEeeccc
Q 002437 257 ASGFVISLEDL 267 (921)
Q Consensus 257 a~gva~~~a~~ 267 (921)
|++|.+.++.+
T Consensus 363 Ad~V~iGr~~l 373 (494)
T 1vrd_A 363 AESVMVGSIFA 373 (494)
T ss_dssp CSEEEESHHHH
T ss_pred CCEEEECHHHh
Confidence 99998766654
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.018 Score=59.14 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=91.1
Q ss_pred HHHHHHHH-hcCCcEEE--EeCCCCC-HHHHHHHHHHHHHHhhc-CceEEecCc-----------HHHHHh-C-CCCeEE
Q 002437 102 LDLIDEAV-AKFVGIVV--LNGGEAS-GKSVYEAACLLKSVVKD-RALFLIAER-----------VDIAAA-V-NASGVL 163 (921)
Q Consensus 102 ~~~~~~~l-~~g~~~vq--lR~k~~~-~~~~~~~a~~l~~~~~~-~~~~ivnd~-----------~dla~~-~-~a~GvH 163 (921)
.+.+.+++ +.|..+|- +|.-+.. .... ..+.+..+. +..++-|.. ..+|.+ + +.+=|-
T Consensus 32 ~~~~~~a~~asg~e~vtva~rR~~~~~~~~~----~~~~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iK 107 (265)
T 1wv2_A 32 LDETRRAIEASGAEIVTVAVRRTNIGQNPDE----PNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVK 107 (265)
T ss_dssp HHHHHHHHHHSCCSEEEEEGGGCCC-----------------CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEE
T ss_pred HHHHHHHHHHhCCCeEEEEEEeeccccCCCc----chHHhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 35566665 67766644 4443432 1111 233444445 777887752 235666 3 333333
Q ss_pred c---CCCCC--C-----HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe--CCC-CCCCCCc---c-
Q 002437 164 L---SDQGL--P-----AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC--CFG-EGQKADV---I- 226 (921)
Q Consensus 164 L---~~~~l--~-----~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~--gpv-Tk~~~g~---~- 226 (921)
| ++..+ | ...++.+. .++.. .+-+.+-|+..+++. ...|+|++.- +|+ |. .|+ .
T Consensus 108 lEv~~d~~~llpD~~~tv~aa~~L~----~~Gf~--Vlpy~~dd~~~akrl-~~~G~~aVmPlg~pIGsG--~Gi~~~~l 178 (265)
T 1wv2_A 108 LEVLADQKTLFPNVVETLKAAEQLV----KDGFD--VMVYTSDDPIIARQL-AEIGCIAVMPLAGLIGSG--LGICNPYN 178 (265)
T ss_dssp ECCBSCTTTCCBCHHHHHHHHHHHH----TTTCE--EEEEECSCHHHHHHH-HHSCCSEEEECSSSTTCC--CCCSCHHH
T ss_pred EEeecCccccCcCHHHHHHHHHHHH----HCCCE--EEEEeCCCHHHHHHH-HHhCCCEEEeCCccCCCC--CCcCCHHH
Confidence 3 22221 1 23445554 23210 223345689998888 7999999977 234 42 233 2
Q ss_pred hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.+++..++||++-|||. ++++..+++.||+||.|-+|..+.
T Consensus 179 I~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a 222 (265)
T 1wv2_A 179 LRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHA 222 (265)
T ss_dssp HHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTS
T ss_pred HHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 4788888899999999995 899999999999999998887663
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.12 Score=56.87 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=40.0
Q ss_pred ccEEEeCCCCChhhhH--------HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQR--------QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~--------~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+..++||.|....... ...+.+..+...+-+++|+|+....... ..+..+.+.....++++||.|....
T Consensus 242 d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~--~~~~~~~~~~g~t~iiiThlD~~~~ 318 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVGITGLILTKLDGSAR 318 (359)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTCCCEEEEESCTTCSC
T ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHH--HHHHHHHHhcCCeEEEEecCccccc
Confidence 4689999998543211 1122333446788889999965433221 2233444333345778999987644
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.29 E-value=0.048 Score=59.90 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=46.6
Q ss_pred HhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEec
Q 002437 458 EFVPRADLVLFVISADRPLTESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVS 536 (921)
Q Consensus 458 ~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vS 536 (921)
..+.++|.+++|......++.... ++|......++|+++|+||+|+.++ +..+.+... ...+ ...+.+++++|
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~-~~~~~~~~~-~~~y----~~~G~~v~~~S 199 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDD-EGMDFVNEQ-MDIY----RNIGYRVLMVS 199 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCH-HHHHHHHHH-HHHH----HTTTCCEEECB
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc-hhHHHHHHH-HHHH----HhCCCcEEEEe
Confidence 346899999988665433343322 2444445678899999999999854 221112121 1222 22346799999
Q ss_pred ccch
Q 002437 537 ARST 540 (921)
Q Consensus 537 A~~~ 540 (921)
+..+
T Consensus 200 a~~~ 203 (358)
T 2rcn_A 200 SHTQ 203 (358)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 9876
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.018 Score=63.05 Aligned_cols=77 Identities=21% Similarity=0.121 Sum_probs=58.4
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeCCC------CCC----C-CC--cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHc
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCCFG------EGQ----K-AD--VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKS 255 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~gpv------Tk~----~-~g--~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~ 255 (921)
+.-.+.+.++++.| .+.|||+|.+|-- |.+ + +| +. ..++++..++||++-|||. ..++.+++..
T Consensus 153 i~G~v~s~e~A~~a-~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalal 231 (336)
T 1ypf_A 153 IAGNVGTPEAVREL-ENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRF 231 (336)
T ss_dssp EEEEECSHHHHHHH-HHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHT
T ss_pred EECCcCCHHHHHHH-HHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc
Confidence 33346789999999 8999999999521 111 1 11 22 3667777799999999994 8899999999
Q ss_pred CCcEEEEeecccc
Q 002437 256 GASGFVISLEDLS 268 (921)
Q Consensus 256 Ga~gva~~~a~~~ 268 (921)
||++|.+-++.+.
T Consensus 232 GAdaV~iGr~~l~ 244 (336)
T 1ypf_A 232 GATMVMIGSLFAG 244 (336)
T ss_dssp TCSEEEESGGGTT
T ss_pred CCCEEEeChhhhc
Confidence 9999998877773
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.012 Score=60.40 Aligned_cols=170 Identities=12% Similarity=0.039 Sum_probs=99.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHH----HHHHHHHhhcCceEEe----cCc----HHHH
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEA----ACLLKSVVKDRALFLI----AER----VDIA 154 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~----a~~l~~~~~~~~~~iv----nd~----~dla 154 (921)
+|++-.|.. ...+.++.+++ +...+.++.+ ...-++.. .+.|++.+. +..+++ +|- ...+
T Consensus 7 ~livAlD~~-~~~~a~~~~~~-~~~~~~~ikv-----g~~lf~~~G~~~v~~l~~~~p-~~~iflDlKl~Dip~t~~~~~ 78 (221)
T 3exr_A 7 NLQVALDHS-NLKGAITAAVS-VGNEVDVIEA-----GTVCLLQVGSELVEVLRSLFP-DKIIVADTKCADAGGTVAKNN 78 (221)
T ss_dssp EEEEEECCS-SHHHHHHHHHH-HGGGCSEEEE-----CHHHHHHHCTHHHHHHHHHCT-TSEEEEEEEECSCHHHHHHHH
T ss_pred CEEEEeCCC-CHHHHHHHHHh-hCCCceEEEE-----CHHHHHhcCHHHHHHHHHhCC-CCcEEEEEEeeccHHHHHHHH
Confidence 555555542 12244555554 3555778777 23333333 444444321 334443 333 3456
Q ss_pred HhCCCCe--EEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCC---HHHHHcccccCCCCEEEeCCC--CCCCCCcc-
Q 002437 155 AAVNASG--VLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQT---LDAAFNASSSEGADFLVCCFG--EGQKADVI- 226 (921)
Q Consensus 155 ~~~~a~G--vHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~---~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~- 226 (921)
.++|+|. ||.....-.+..+++.....+...+ ++|+++.+ .+++... ...|+||+++.+- ++ ..|..
T Consensus 79 ~~~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~---~~~Vt~lts~~~~~~~~~-~~~~~~~~v~~~a~~~~-~~Gvv~ 153 (221)
T 3exr_A 79 AVRGADWMTCICSATIPTMKAARKAIEDINPDKG---EIQVELYGDWTYDQAQQW-LDAGISQAIYHQSRDAL-LAGETW 153 (221)
T ss_dssp HTTTCSEEEEETTSCHHHHHHHHHHHHHHCTTTC---EEEEECCSSCCHHHHHHH-HHTTCCEEEEECCHHHH-HHTCCC
T ss_pred HHcCCCEEEEeccCCHHHHHHHHHHHHhcCCCcc---eEEEEEcCCCCHHHHHHH-HcCCHHHHHHHHHHhcC-CCcccc
Confidence 6789999 8986654334444443310001112 67877743 6666666 5679999999775 22 12221
Q ss_pred ----hhhhhhc--CCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 ----ENSLFTN--VKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 ----~~~~~~~--~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...+++. .++|+.+.|||+++|+..+.++||+.+++-++..+.
T Consensus 154 s~~e~~~ir~~~~~~~~i~v~gGI~~~~~~~~~~aGad~~VvG~~I~~a 202 (221)
T 3exr_A 154 GEKDLNKVKKLIEMGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEA 202 (221)
T ss_dssp CHHHHHHHHHHHHHTCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHTS
T ss_pred CHHHHHHHHHhhcCCceEEEECCCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 2334333 368899999999999999999999999887766543
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.024 Score=59.84 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=58.9
Q ss_pred HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhc--CCCCEEEEcCCCcc
Q 002437 171 AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTN--VKIPIFIMNASPLV 247 (921)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~--~~~Pv~aiGGi~~~ 247 (921)
+..+|... |. + -|-+-|.|++|+.+| .+.|+|.|.|--. .++ .+++.+. -.+++.|.|||+++
T Consensus 198 v~~ar~~~----p~-~---kIeVEv~tl~e~~eA-l~aGaDiImLDn~-----s~~~l~~av~~~~~~v~leaSGGIt~~ 263 (300)
T 3l0g_A 198 IQRLRKNL----KN-E---YIAIECDNISQVEES-LSNNVDMILLDNM-----SISEIKKAVDIVNGKSVLEVSGCVNIR 263 (300)
T ss_dssp HHHHHHHS----SS-C---CEEEEESSHHHHHHH-HHTTCSEEEEESC-----CHHHHHHHHHHHTTSSEEEEESSCCTT
T ss_pred HHHHHHhC----CC-C---CEEEEECCHHHHHHH-HHcCCCEEEECCC-----CHHHHHHHHHhhcCceEEEEECCCCHH
Confidence 34566654 55 2 478899999999999 8999999999543 222 2222221 26889999999999
Q ss_pred ChHHHHHcCCcEEEE
Q 002437 248 DVSKFLKSGASGFVI 262 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~ 262 (921)
|+.+..++|++.|.+
T Consensus 264 ~i~~~A~tGVD~Isv 278 (300)
T 3l0g_A 264 NVRNIALTGVDYISI 278 (300)
T ss_dssp THHHHHTTTCSEEEC
T ss_pred HHHHHHHcCCCEEEe
Confidence 999999999999954
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.076 Score=59.37 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=56.8
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeCCC---CC--CCCCcc----hhhhhhc-------CC---CCEEEEcCC-CccCh
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCCFG---EG--QKADVI----ENSLFTN-------VK---IPIFIMNAS-PLVDV 249 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~gpv---Tk--~~~g~~----~~~~~~~-------~~---~Pv~aiGGi-~~~~~ 249 (921)
++.--+.+.+++..| .+.|||+|.+|-- +. ...|.. ..++.+. .. +||+|-||| +..++
T Consensus 214 vi~ggi~t~e~a~~~-~~~Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv 292 (393)
T 2qr6_A 214 VIAGGVNDYTTALHM-MRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDV 292 (393)
T ss_dssp EEEECCCSHHHHHHH-HTTTCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHH
T ss_pred EEECCcCCHHHHHHH-HHcCCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHH
Confidence 343356789999999 8999999999752 11 122333 2333333 33 999999999 58899
Q ss_pred HHHHHcCCcEEEEeeccccc
Q 002437 250 SKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+++.+||++|.+.++.+..
T Consensus 293 ~kalalGA~~V~iG~~~l~~ 312 (393)
T 2qr6_A 293 VKAIACGADAVVLGSPLARA 312 (393)
T ss_dssp HHHHHHTCSEEEECGGGGGS
T ss_pred HHHHHcCCCEEEECHHHHcC
Confidence 99999999999887776543
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.07 Score=58.61 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=50.9
Q ss_pred HHcccccCCCCEEEeCC--C--C--CC-CCC--cc-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeecccc
Q 002437 201 AFNASSSEGADFLVCCF--G--E--GQ-KAD--VI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLEDLS 268 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gp--v--T--k~-~~g--~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a~~~ 268 (921)
++.. .+.|+||+-++- . + .+ .++ +. ...+++.+++||++.||| +++++.++++.| |+.|++.++.+.
T Consensus 245 a~~L-~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 245 ARRL-KELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLR 323 (349)
T ss_dssp HHHH-HHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred HHHH-HHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHh
Confidence 4444 578999999873 2 1 11 122 22 367777789999999999 689999999999 999999998875
Q ss_pred c
Q 002437 269 L 269 (921)
Q Consensus 269 ~ 269 (921)
.
T Consensus 324 n 324 (349)
T 3hgj_A 324 D 324 (349)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=95.15 E-value=0.024 Score=58.40 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=75.9
Q ss_pred HHHHHhCCCCeEEcCCCCCCHHHHHHh------cccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCC-CC-C
Q 002437 151 VDIAAAVNASGVLLSDQGLPAIVARNT------MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGE-GQ-K 222 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~~l~~~~~r~~------~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvT-k~-~ 222 (921)
+.-|..+|||.|-|=-.-++....+.+ +| -+ +=+-+||.+|+.+| ...|++.|++-.-. ++ .
T Consensus 119 I~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lG---l~------~LvEVh~~~El~rA-l~~~a~iIGINNRnL~tf~ 188 (258)
T 4a29_A 119 IDDAYNLGADTVLLIVKILTERELESLLEYARSYG---ME------PLILINDENDLDIA-LRIGARFIGIMSRDFETGE 188 (258)
T ss_dssp HHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTT---CC------CEEEESSHHHHHHH-HHTTCSEEEECSBCTTTCC
T ss_pred HHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHh---HH------HHHhcchHHHHHHH-hcCCCcEEEEeCCCccccc
Confidence 445667899999886666664443332 23 22 22478999999999 89999999986541 11 1
Q ss_pred CCcc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 223 ADVI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 223 ~g~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..+. ...++..+ ++++++-+|| +++++..+.++|++||-|-.+.|+.
T Consensus 189 vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~ 239 (258)
T 4a29_A 189 INKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRN 239 (258)
T ss_dssp BCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred cCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 2222 24455544 4678888999 5889999999999999887777774
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.015 Score=65.58 Aligned_cols=121 Identities=16% Similarity=0.076 Sum_probs=82.2
Q ss_pred HHHHhCCCCeEEcCCCCCCHHHHHHhcccCC-CCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCCCcc-h
Q 002437 152 DIAAAVNASGVLLSDQGLPAIVARNTMKDSM-SESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKADVI-E 227 (921)
Q Consensus 152 dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~-~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g~~-~ 227 (921)
.-|..+|||+|-|--..++....+.+..... -+ . .+=+-|||.+|+.+| ...|+|+|++-+- +....++. .
T Consensus 124 ~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lg-m---~~LvEvh~~eE~~~A-~~lga~iIGinnr~L~t~~~dl~~~ 198 (452)
T 1pii_A 124 YLARYYQADACLLMLSVLDDDQYRQLAAVAHSLE-M---GVLTEVSNEEEQERA-IALGAKVVGINNRDLRDLSIDLNRT 198 (452)
T ss_dssp HHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTT-C---EEEEEECSHHHHHHH-HHTTCSEEEEESEETTTTEECTHHH
T ss_pred HHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcC-C---eEEEEeCCHHHHHHH-HHCCCCEEEEeCCCCCCCCCCHHHH
Confidence 3456789999998777776443333321000 01 1 344578999999999 8999999998765 22223343 3
Q ss_pred hhhhhcC--CCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccchH-HHHHhh
Q 002437 228 NSLFTNV--KIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLFND-GVLSQM 278 (921)
Q Consensus 228 ~~~~~~~--~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~~~-~~~~~~ 278 (921)
..+...+ ++++++-|||+ ++++..+.++ ++||.|-.+.|+.-.. ..++.+
T Consensus 199 ~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d~~~~~~~l 252 (452)
T 1pii_A 199 RELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAVRRV 252 (452)
T ss_dssp HHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHH
Confidence 4555544 57899999995 8999999999 9999998888886432 333444
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0046 Score=64.25 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=40.6
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSD 502 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D 502 (921)
.+++|||||+..+. .+...+..+|.+|+|++.+......-..+++.+...+ ..+.+|+||.+
T Consensus 132 yD~viiD~pp~~~~------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH------LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CSEEEEEECTTCTT------CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCEEEEeCCCcccH------HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 36899999875322 2445668899999999876322222223444444444 46889999998
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.021 Score=58.21 Aligned_cols=170 Identities=15% Similarity=0.023 Sum_probs=89.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHH----HHHHHHHhhcCceEEe--------cCcHHHH
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEA----ACLLKSVVKDRALFLI--------AERVDIA 154 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~----a~~l~~~~~~~~~~iv--------nd~~dla 154 (921)
++++-.|... ..+.++.++++ ...+.++-. .+.-++.. .+.+++.+. +..+++ |...+.+
T Consensus 5 ~~ilalD~~~-~~~~~~~~~~~-~~~v~~~kv-----~~~~f~~~G~~~i~~l~~~~p-~~~v~lD~kl~dip~t~~~~~ 76 (216)
T 1q6o_A 5 MLQVALDNQT-MDSAYETTRLI-AEEVDIIEV-----GTILCVGEGVRAVRDLKALYP-HKIVLADAKIADAGKILSRMC 76 (216)
T ss_dssp EEEEEECCSS-HHHHHHHHHHH-GGGCSEEEE-----CHHHHHHHCTHHHHHHHHHCT-TSEEEEEEEECSCHHHHHHHH
T ss_pred CeEEEECCCC-HHHHHHHHHHh-cccCCEEEE-----CHHHHHHhCHHHHHHHHHhCC-CCeEEEEEEecccHHHHHHHH
Confidence 4566666421 22444555544 234565532 33334433 344444321 344442 3335567
Q ss_pred HhCCCCeE--EcCCCCCCHHHHHHhcccCCCCccccCeE-EEecCCHHHHHcccccCCCCEEEeCCC--CC-CC-CC-cc
Q 002437 155 AAVNASGV--LLSDQGLPAIVARNTMKDSMSESVVLPLV-GRNVQTLDAAFNASSSEGADFLVCCFG--EG-QK-AD-VI 226 (921)
Q Consensus 155 ~~~~a~Gv--HL~~~~l~~~~~r~~~~~~~~~~~~~~~i-g~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk-~~-~g-~~ 226 (921)
.++|||.| |.....-....+.+.....+.. ..+-++ +++ ...+... ...|.+++++.-. |. +. .| +.
T Consensus 77 ~~~Gad~itvh~~~g~~~l~~~~~~~~~~g~~-~~~~ll~~~t---~~~~~~l-~~~~~~~~vl~~a~~~~~~G~~g~~~ 151 (216)
T 1q6o_A 77 FEANADWVTVICCADINTAKGALDVAKEFNGD-VQIELTGYWT---WEQAQQW-RDAGIGQVVYHRSRDAQAAGVAWGEA 151 (216)
T ss_dssp HHTTCSEEEEETTSCHHHHHHHHHHHHHTTCE-EEEEECSCCC---HHHHHHH-HHTTCCEEEEECCHHHHHTTCCCCHH
T ss_pred HhCCCCEEEEeccCCHHHHHHHHHHHHHcCCC-ceeeeeeCCC---hhhHHHH-HhcCcHHHHHHHHHHHHhcCCCCCHH
Confidence 78999976 7654422122222222100011 000022 332 3333333 4557888887432 22 11 22 33
Q ss_pred -hhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 227 -ENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 227 -~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+.+++.. ++|+++.|||+++++.++.++||++|++.++..+.
T Consensus 152 ~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aGad~ivvG~~I~~a 197 (216)
T 1q6o_A 152 DITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDA 197 (216)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTS
T ss_pred HHHHHHHhcCCCCcEEEECCcChhhHHHHHHcCCCEEEEeehhcCC
Confidence 34444443 68899999999999999999999999988887653
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.024 Score=62.85 Aligned_cols=73 Identities=26% Similarity=0.278 Sum_probs=55.4
Q ss_pred ecCCHHHHHcccccCCCCEEEeCCC-CCCC----CCcc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEee
Q 002437 194 NVQTLDAAFNASSSEGADFLVCCFG-EGQK----ADVI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISL 264 (921)
Q Consensus 194 S~h~~~e~~~A~~~~gaDyv~~gpv-Tk~~----~g~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~ 264 (921)
-+++.+++..| .+.|+|+|.+|.- +... +.+. ..++.+.+ ++||++-||| +.+++.+++++||++|.+-+
T Consensus 232 ~~~~~e~a~~a-~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr 310 (370)
T 1gox_A 232 GVITAEDARLA-VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGR 310 (370)
T ss_dssp CCCSHHHHHHH-HHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred ecCCHHHHHHH-HHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecH
Confidence 45889999999 8999999999864 2211 1111 34555655 7999999999 56799999999999998766
Q ss_pred ccc
Q 002437 265 EDL 267 (921)
Q Consensus 265 a~~ 267 (921)
+.+
T Consensus 311 ~~l 313 (370)
T 1gox_A 311 PVV 313 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.1 Score=54.66 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=43.0
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhc--CCeEEEEEeCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQW--KKKVVFVLNKSDL 503 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~--~~~vivVlNK~D~ 503 (921)
.+++|||||+..+ ..+...+..+|.+|+|+..+......-..+++.+... +.++.+|+|+++.
T Consensus 145 yD~viiD~pp~~~------~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 145 YDYIVIDTNPSLD------VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp CSEEEEEECSSCS------HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCEEEEECcCCcc------HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 3689999998532 2355666779999999998754333333455666554 3478899999953
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.035 Score=57.62 Aligned_cols=176 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC----HHHHHHHH----------HHHHHHhhc---CceEEec-
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS----GKSVYEAA----------CLLKSVVKD---RALFLIA- 148 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~a----------~~l~~~~~~---~~~~ivn- 148 (921)
.-|+.... .+.+...+.+....++|++++-|=-|-.+ .....+.. ..+.++.+. ..++++=
T Consensus 17 i~yitaG~-P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Pivlm~ 95 (252)
T 3tha_A 17 VAYTVLGY-PNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMV 95 (252)
T ss_dssp EEEEETTS-SCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEEEEC
T ss_pred EEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 34555443 22346677777777899999988766443 22221111 222233332 2577662
Q ss_pred -----------CcHHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEE
Q 002437 149 -----------ERVDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLV 214 (921)
Q Consensus 149 -----------d~~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~ 214 (921)
...+-|.+.|+||+-+++ +|..+. ++.....+-+ . +.+ -..+.+.+.+++. .+.+-+|+-
T Consensus 96 Y~N~i~~~G~e~F~~~~~~aGvdG~IipD--LP~eE~~~~~~~~~~~Gl~-~-I~l-vaP~t~~eRi~~i-a~~a~gFiY 169 (252)
T 3tha_A 96 YYNLIFSYGLEKFVKKAKSLGICALIVPE--LSFEESDDLIKECERYNIA-L-ITL-VSVTTPKERVKKL-VKHAKGFIY 169 (252)
T ss_dssp CHHHHHHHCHHHHHHHHHHTTEEEEECTT--CCGGGCHHHHHHHHHTTCE-E-CEE-EETTSCHHHHHHH-HTTCCSCEE
T ss_pred ccCHHHHhhHHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHHHHcCCe-E-EEE-eCCCCcHHHHHHH-HHhCCCeEE
Confidence 245567788999999965 564332 2221100012 1 112 2223345666655 455556654
Q ss_pred eCC---CCCCCCC----cc--hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccccc
Q 002437 215 CCF---GEGQKAD----VI--ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 215 ~gp---vTk~~~g----~~--~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
+-+ +|....+ +. ...+++..++||++-+|| +++++..+.+ +|+||.|-+|.++..
T Consensus 170 ~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i 234 (252)
T 3tha_A 170 LLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCF 234 (252)
T ss_dssp EECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHT
T ss_pred EEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHH
Confidence 432 3443222 22 366777789999999999 7888888876 699999888877654
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.032 Score=60.26 Aligned_cols=74 Identities=23% Similarity=0.209 Sum_probs=54.3
Q ss_pred cCCHHH-HHcccccCCCCEEEeCC--------C-CCCC---------CCc-------c-hhhhhhcCCCCEEEEcCC-Cc
Q 002437 195 VQTLDA-AFNASSSEGADFLVCCF--------G-EGQK---------ADV-------I-ENSLFTNVKIPIFIMNAS-PL 246 (921)
Q Consensus 195 ~h~~~e-~~~A~~~~gaDyv~~gp--------v-Tk~~---------~g~-------~-~~~~~~~~~~Pv~aiGGi-~~ 246 (921)
+.+..+ +..+ .+.|+|||.+.. . |+.+ .|. . ..++++.+++||++.||| ++
T Consensus 175 ~~~~~~~a~~l-~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~ 253 (311)
T 1ep3_A 175 VTDIVPIAKAV-EAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANA 253 (311)
T ss_dssp SSCSHHHHHHH-HHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSH
T ss_pred hHHHHHHHHHH-HHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCH
Confidence 345555 6666 789999999943 2 2211 111 2 246667779999999999 79
Q ss_pred cChHHHHHcCCcEEEEeeccccc
Q 002437 247 VDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 247 ~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+++.+++++||++|.+.++.+..
T Consensus 254 ~d~~~~l~~GAd~V~vg~~~l~~ 276 (311)
T 1ep3_A 254 QDVLEMYMAGASAVAVGTANFAD 276 (311)
T ss_dssp HHHHHHHHHTCSEEEECTHHHHC
T ss_pred HHHHHHHHcCCCEEEECHHHHcC
Confidence 99999999999999998887663
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.048 Score=60.31 Aligned_cols=70 Identities=20% Similarity=0.093 Sum_probs=53.2
Q ss_pred cCCHHHHHcccccCCCCEEEeCCCC--CCCCCcc----hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeec
Q 002437 195 VQTLDAAFNASSSEGADFLVCCFGE--GQKADVI----ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 195 ~h~~~e~~~A~~~~gaDyv~~gpvT--k~~~g~~----~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a 265 (921)
+++.++++.| .+.|+|+|.++.-. ....|.. ..++.+.+ ++||++-||| +..++.+++..||++|.+.++
T Consensus 237 v~~~e~a~~a-~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~ 315 (368)
T 2nli_A 237 IQHPEDADMA-IKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRP 315 (368)
T ss_dssp ECSHHHHHHH-HHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred CCCHHHHHHH-HHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 5899999999 89999999997531 1122222 34555555 6999999999 477899999999999977653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.022 Score=56.24 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
++++++|++|+|||||++.|.|.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.019 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++|+|++|||||||++.|.|.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.033 Score=56.28 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.....|+|+|++|||||||++.|.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.04 Score=54.49 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+.....|+++|++|||||||++.|.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 445678999999999999999999986
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.055 Score=59.02 Aligned_cols=72 Identities=19% Similarity=0.115 Sum_probs=53.8
Q ss_pred cCCHHHHHcccccCCCCEEEeCCC--CCCCCC---cc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeec
Q 002437 195 VQTLDAAFNASSSEGADFLVCCFG--EGQKAD---VI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 195 ~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g---~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a 265 (921)
+.+.+++..| .+.|+|+|.++-- +....+ +. +.++++.+ ++||++-||| +..++.+++..||++|.+-++
T Consensus 225 v~~~e~A~~a-~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~ 303 (352)
T 3sgz_A 225 ILTKEDAELA-MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRP 303 (352)
T ss_dssp ECSHHHHHHH-HHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred cCcHHHHHHH-HHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 4789999999 8999999999643 221112 22 34555555 7999999999 578899999999999987665
Q ss_pred cc
Q 002437 266 DL 267 (921)
Q Consensus 266 ~~ 267 (921)
.+
T Consensus 304 ~l 305 (352)
T 3sgz_A 304 IL 305 (352)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.062 Score=58.97 Aligned_cols=77 Identities=18% Similarity=0.049 Sum_probs=54.9
Q ss_pred EEEecCCHHHHHcccccCCCCEEEeC--CCC----C--CCCCcc----h---hhhhhcCCCCEEEEcCCC-ccChHHHHH
Q 002437 191 VGRNVQTLDAAFNASSSEGADFLVCC--FGE----G--QKADVI----E---NSLFTNVKIPIFIMNASP-LVDVSKFLK 254 (921)
Q Consensus 191 ig~S~h~~~e~~~A~~~~gaDyv~~g--pvT----k--~~~g~~----~---~~~~~~~~~Pv~aiGGi~-~~~~~~~~~ 254 (921)
+...+-+.++++.| .+.|+|+|.+| |-+ . ...+.. . ...+...++||+|-|||. +.++.++++
T Consensus 165 i~g~v~t~e~A~~a-~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAla 243 (351)
T 2c6q_A 165 MAGNVVTGEMVEEL-ILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFG 243 (351)
T ss_dssp EEEEECSHHHHHHH-HHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHH
T ss_pred EEEeCCCHHHHHHH-HHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHH
Confidence 33357789999999 89999999876 211 1 011211 1 233444589999999995 889999999
Q ss_pred cCCcEEEEeecccc
Q 002437 255 SGASGFVISLEDLS 268 (921)
Q Consensus 255 ~Ga~gva~~~a~~~ 268 (921)
.||++|.+-++.+.
T Consensus 244 lGA~~V~vG~~fl~ 257 (351)
T 2c6q_A 244 AGADFVMLGGMLAG 257 (351)
T ss_dssp TTCSEEEESTTTTT
T ss_pred cCCCceeccHHHhc
Confidence 99999987665543
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.052 Score=58.87 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=51.8
Q ss_pred HHHHcccccCCCCEEEeCCCCCC-----CCCcc-hhhhhhcCCCCEEEEcCC-CccChHHHHH-cCCcEEEEeeccccc
Q 002437 199 DAAFNASSSEGADFLVCCFGEGQ-----KADVI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLK-SGASGFVISLEDLSL 269 (921)
Q Consensus 199 ~e~~~A~~~~gaDyv~~gpvTk~-----~~g~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~-~Ga~gva~~~a~~~~ 269 (921)
+.+..+ .+.|+||+.+.+.|.. ++... ...+++ ++||++-||| +++++.++++ .||++|.+.++.+..
T Consensus 144 ~~a~~l-~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~ 219 (318)
T 1vhn_A 144 EIYRIL-VEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGR 219 (318)
T ss_dssp HHHHHH-HHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTC
T ss_pred HHHHHH-HHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhC
Confidence 556666 7899999999766432 11222 345555 8999999999 7899999998 799999999988764
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.037 Score=57.66 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHHHcccccCCCCEEEeCCCCC--CCCC--cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccc
Q 002437 199 DAAFNASSSEGADFLVCCFGEG--QKAD--VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 199 ~e~~~A~~~~gaDyv~~gpvTk--~~~g--~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+-++.+ .+.|+|++.+...+. ...+ .. ...+++.+++||++-|||. ++++..++++||++|.+.++.+.
T Consensus 39 ~~a~~~-~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~ 113 (247)
T 3tdn_A 39 DWVVEV-EKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE 113 (247)
T ss_dssp HHHHHH-HHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHH
T ss_pred HHHHHH-HHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhh
Confidence 445555 788999998865522 2222 23 4788888999999999995 67899999999999988777764
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.038 Score=60.75 Aligned_cols=69 Identities=10% Similarity=0.050 Sum_probs=52.2
Q ss_pred HHHHcccccCCCCEEEeCCCCCC------------CCCcc-hhhhhhcC-CCCEEEEcCC-CccChHHHHHcCCcEEEEe
Q 002437 199 DAAFNASSSEGADFLVCCFGEGQ------------KADVI-ENSLFTNV-KIPIFIMNAS-PLVDVSKFLKSGASGFVIS 263 (921)
Q Consensus 199 ~e~~~A~~~~gaDyv~~gpvTk~------------~~g~~-~~~~~~~~-~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~ 263 (921)
+.+..+ .+.|+||+.+.+.|.. +.... ...+++.+ ++||++-||| +++++.++++ ||+||.+.
T Consensus 148 ~~a~~l-~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 148 QSVEAM-AEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp HHHHHH-HHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred HHHHHH-HHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 335566 6889999999875321 11122 36777777 8999999999 6899999998 99999998
Q ss_pred eccccc
Q 002437 264 LEDLSL 269 (921)
Q Consensus 264 ~a~~~~ 269 (921)
++.+..
T Consensus 226 Ra~l~~ 231 (350)
T 3b0p_A 226 RAVYED 231 (350)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 888764
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.026 Score=56.63 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
...|+++|++|+|||||++.|++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578899999999999999999753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.029 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.056 Score=58.50 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++.|+|+|.+|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998653
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.064 Score=57.36 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=40.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh------cCCeE-EEEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ------WKKKV-VFVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~------~~~~v-ivVlNK~D~~ 504 (921)
+++|||||+..+.. +...+..+|.+|+|+..+......-..+++.+.. .+.++ -+|+|+.|..
T Consensus 156 D~IiiD~pp~~~~~------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 156 DLIIIDTVPTPSVY------TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp SEEEEEECSSCSHH------HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CEEEEECCCCccHH------HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 68999999864321 2233345999999998875443333344444433 24564 4899999965
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=93.34 E-value=0.037 Score=55.86 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+...-.++++|+.|||||||++.|.|..
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455689999999999999999999853
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.041 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....++++|++|||||||++.|.|.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3457999999999999999999986
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.14 Score=55.81 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=53.9
Q ss_pred CCHHHHHcccccCCCCEEEeCCC--C--------CC----------CCCcc----hhhhhhcC-CCCEEEEcCC-CccCh
Q 002437 196 QTLDAAFNASSSEGADFLVCCFG--E--------GQ----------KADVI----ENSLFTNV-KIPIFIMNAS-PLVDV 249 (921)
Q Consensus 196 h~~~e~~~A~~~~gaDyv~~gpv--T--------k~----------~~g~~----~~~~~~~~-~~Pv~aiGGi-~~~~~ 249 (921)
.+.+++..+ .+.|+|+|.++-- | .. ..|+. ..++++.+ ++||++-||| ++.++
T Consensus 193 ~~~e~a~~~-~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~ 271 (332)
T 1vcf_A 193 LSREAALAL-RDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDG 271 (332)
T ss_dssp CCHHHHHHH-TTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHH
T ss_pred CCHHHHHHH-HHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHH
Confidence 688999999 8999999998531 2 21 12332 24566666 7999999999 57889
Q ss_pred HHHHHcCCcEEEEeeccc
Q 002437 250 SKFLKSGASGFVISLEDL 267 (921)
Q Consensus 250 ~~~~~~Ga~gva~~~a~~ 267 (921)
.+++..||++|.+.++.+
T Consensus 272 ~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 272 AKALALGADLLAVARPLL 289 (332)
T ss_dssp HHHHHHTCSEEEECGGGH
T ss_pred HHHHHhCCChHhhhHHHH
Confidence 999999999998877655
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.045 Score=56.56 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44579999999999999999999853
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.064 Score=59.58 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=55.4
Q ss_pred cCCHHHHHcccccCCCCEEEeCCC--CCC---CCCcc-hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccc
Q 002437 195 VQTLDAAFNASSSEGADFLVCCFG--EGQ---KADVI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 195 ~h~~~e~~~A~~~~gaDyv~~gpv--Tk~---~~g~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~ 267 (921)
+-+.+++..| .+.|+|+|.+|-- +.. .+.+. ..++++.+++||++-||| +..++.+++.+||++|.+.++.+
T Consensus 233 v~t~e~a~~a-~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l 311 (380)
T 1p4c_A 233 LLSAEDADRC-IAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATL 311 (380)
T ss_dssp ECCHHHHHHH-HHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred cCcHHHHHHH-HHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHH
Confidence 4689999999 8999999999643 211 12232 466777778899999999 46699999999999998776654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.12 Score=54.39 Aligned_cols=114 Identities=10% Similarity=0.006 Sum_probs=63.9
Q ss_pred cEEEeCCCCChh--hhHHHHHHHHhcCCCCEEEEEEeCCCCC---CHHHHH-HHHHhhh----cCCeEEEEEeC-CCCCC
Q 002437 437 MIIVDTPGTNVI--LQRQQRLTEEFVPRADLVLFVISADRPL---TESEVV-FLRYTQQ----WKKKVVFVLNK-SDLYQ 505 (921)
Q Consensus 437 l~lvDTPG~~~~--~~~~~~~~~~~l~~aD~il~V~da~~~~---t~~e~~-~l~~l~~----~~~~vivVlNK-~D~~~ 505 (921)
+....+||-+.. .......++.|+..+|++|||+|+++.. ...++. +...+.+ .+.|++|+.|| -|+..
T Consensus 183 ~f~~~~~~~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 183 MFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp --------------CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred hccccCCCCcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 444555652211 1334577999999999999999997653 233332 2122221 46799999997 47754
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 506 NAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 506 ~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.- ...++.+.+. +..+ . ....|.++||.+| .|+.+=.+++.+.+.
T Consensus 263 Am-s~~EI~e~L~--L~~l-~-r~W~Iq~csA~tG---------------------------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 263 RM-PCFYLAHELH--LNLL-N-HPWLVQDTEAETL---------------------------TGFLNGIEWILEEVE 307 (312)
T ss_dssp BC-CHHHHHHHTT--GGGG-C-SCEEEEEEETTTC---------------------------TTHHHHHHHHHHHSC
T ss_pred CC-CHHHHHHHcC--CccC-C-CcEEEEecccCCC---------------------------cCHHHHHHHHHHHHH
Confidence 31 1233333322 1222 2 4577999999998 677777777777665
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.048 Score=59.67 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHcccccCCCCEEEeCCCCC-----C-CCC--cc-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeeccccc
Q 002437 201 AFNASSSEGADFLVCCFGEG-----Q-KAD--VI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLEDLSL 269 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvTk-----~-~~g--~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a~~~~ 269 (921)
++.. .+.|+||+-++.-|. + .++ +. ...+++.+++||++.||| +++++.++++.| |++|++.++.+..
T Consensus 235 a~~l-~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~n 313 (338)
T 1z41_A 235 AKWM-KEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRD 313 (338)
T ss_dssp HHHH-HHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred HHHH-HHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhC
Confidence 3344 678999999876421 1 222 22 367778889999999999 799999999999 9999999988865
Q ss_pred chHHHHHhh
Q 002437 270 FNDGVLSQM 278 (921)
Q Consensus 270 ~~~~~~~~~ 278 (921)
+++.+++
T Consensus 314 --Pdl~~ki 320 (338)
T 1z41_A 314 --PFFARTA 320 (338)
T ss_dssp --TTHHHHH
T ss_pred --chHHHHH
Confidence 4455554
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.039 Score=56.31 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++|+|++|||||||++.|.|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45578999999999999999999843
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.05 Score=55.76 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999863
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.047 Score=55.77 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=23.2
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+...-.++++|+.|||||||++.|.|..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3455689999999999999999999863
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.053 Score=54.67 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....|+++|+.|||||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.092 Score=58.45 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCHHHHHcccccCCCCEEEeCCCC--CCCCCcc----hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeecc
Q 002437 196 QTLDAAFNASSSEGADFLVCCFGE--GQKADVI----ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 196 h~~~e~~~A~~~~gaDyv~~gpvT--k~~~g~~----~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~ 266 (921)
-+.+++..| .+.|+|+|.++.-. ....|+. ..++++.+ ++||++-||| +..++.+++..||++|.+.++.
T Consensus 261 ~~~e~A~~a-~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 261 LRGDDAREA-VKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp CCHHHHHHH-HHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CCHHHHHHH-HHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHH
Confidence 579999999 89999999997531 1122222 24555544 5999999999 4788999999999999876644
Q ss_pred c
Q 002437 267 L 267 (921)
Q Consensus 267 ~ 267 (921)
+
T Consensus 340 l 340 (392)
T 2nzl_A 340 V 340 (392)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.66 Score=52.76 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=54.1
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeC--CC----CCCC--CCcc-h------hhhhhcCCCCEEEEcCCC-ccChHHHH
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCC--FG----EGQK--ADVI-E------NSLFTNVKIPIFIMNASP-LVDVSKFL 253 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk~~--~g~~-~------~~~~~~~~~Pv~aiGGi~-~~~~~~~~ 253 (921)
+++-.+-+.+.++.. ...|||.|-+| |- |..- .|.. . .++++...+||+|=|||. ..++..++
T Consensus 325 viaGNVaT~e~a~~L-i~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAl 403 (556)
T 4af0_A 325 VIAGNVVTREQAAQL-IAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKAL 403 (556)
T ss_dssp EEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH
T ss_pred EEeccccCHHHHHHH-HHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHh
Confidence 677788888887776 67899998665 53 3332 3333 1 455667789999999995 67899999
Q ss_pred HcCCcEEEE
Q 002437 254 KSGASGFVI 262 (921)
Q Consensus 254 ~~Ga~gva~ 262 (921)
++||+.|-+
T Consensus 404 aaGAd~VMl 412 (556)
T 4af0_A 404 ALGASAVMM 412 (556)
T ss_dssp HTTCSEEEE
T ss_pred hcCCCEEEE
Confidence 999999955
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.067 Score=51.58 Aligned_cols=28 Identities=14% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+...-.++++|+.|||||||++.|.|.-
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3456689999999999999999999864
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.1 Score=53.78 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=56.7
Q ss_pred ecCCHHHHHcccccCCCCEEEe-C-CC-CCCCCCcc----hhhhhh-cCC-CCEEEEcCCC-ccChHHHHHcCCcEEEEe
Q 002437 194 NVQTLDAAFNASSSEGADFLVC-C-FG-EGQKADVI----ENSLFT-NVK-IPIFIMNASP-LVDVSKFLKSGASGFVIS 263 (921)
Q Consensus 194 S~h~~~e~~~A~~~~gaDyv~~-g-pv-Tk~~~g~~----~~~~~~-~~~-~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~ 263 (921)
.+.|+..+++. ...|+|+|.- | |+ |.. |+. ...+++ ..+ +||++-|||. ++++..+++.||+||.|-
T Consensus 131 ~~~D~~~ak~l-~~~G~~aVmPlg~pIGsG~--Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 131 MGPDLVLAKRL-AALGTATVMPLAAPIGSGW--GVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp ECSCHHHHHHH-HHHTCSCBEEBSSSTTTCC--CSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEES
T ss_pred cCCCHHHHHHH-HhcCCCEEEecCccCcCCc--ccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 44689888888 7899999965 2 34 432 332 366777 667 9999999995 799999999999999998
Q ss_pred eccccc
Q 002437 264 LEDLSL 269 (921)
Q Consensus 264 ~a~~~~ 269 (921)
+|..+.
T Consensus 208 SAI~~a 213 (268)
T 2htm_A 208 TAIAEA 213 (268)
T ss_dssp HHHHTS
T ss_pred hHHhCC
Confidence 877763
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.064 Score=55.62 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
-.++++|+.|||||||++.|.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999963
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.06 Score=55.69 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999863
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.062 Score=56.91 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999999953
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.063 Score=56.59 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999999963
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.065 Score=53.62 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.....|+++|++||||||+++.|.+.-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345689999999999999999998753
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.057 Score=56.76 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...-.++|+|++|||||||+++|.|.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 35568999999999999999999884
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.065 Score=56.15 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999999963
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.066 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999963
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.065 Score=56.34 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999963
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=92.29 E-value=0.067 Score=55.04 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999963
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.063 Score=52.40 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..-.++++|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 456799999999999999998654
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.17 E-value=0.066 Score=54.45 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
-.++++|+.|||||||++.|.|-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999963
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.071 Score=53.81 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
....|+++|++||||||+++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45679999999999999999998763
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.12 Score=59.47 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCHHHHHcccccCCCCEEEeCCC--CCCCCC---cc-hhhhhhcC-------CCCEEEEcCCC-ccChHHHHHcCCcEEE
Q 002437 196 QTLDAAFNASSSEGADFLVCCFG--EGQKAD---VI-ENSLFTNV-------KIPIFIMNASP-LVDVSKFLKSGASGFV 261 (921)
Q Consensus 196 h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g---~~-~~~~~~~~-------~~Pv~aiGGi~-~~~~~~~~~~Ga~gva 261 (921)
-+.+++..| .+.|+|+|.+|-- |.-..+ +. ..++.+.+ ++||++-|||. ..++.+++..||++|.
T Consensus 352 ~~~e~A~~a-~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~ 430 (511)
T 1kbi_A 352 QRTEDVIKA-AEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVG 430 (511)
T ss_dssp CSHHHHHHH-HHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHH-HHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 358999999 8999999999743 311111 22 23444433 79999999994 7789999999999998
Q ss_pred Eeeccc
Q 002437 262 ISLEDL 267 (921)
Q Consensus 262 ~~~a~~ 267 (921)
+.++.+
T Consensus 431 iGr~~l 436 (511)
T 1kbi_A 431 LGRPFL 436 (511)
T ss_dssp ECHHHH
T ss_pred ECHHHH
Confidence 766443
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.076 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.-.++++|+.|||||||++.|.|-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999996
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=92.09 E-value=0.28 Score=56.48 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=72.9
Q ss_pred CcHHHHHhCCCCeEEcCCCCCC-------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC---
Q 002437 149 ERVDIAAAVNASGVLLSDQGLP-------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--- 218 (921)
Q Consensus 149 d~~dla~~~~a~GvHL~~~~l~-------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--- 218 (921)
++...+.+.|+|.+-++...-. ....+... |+ . .+++-.+.+.+.+..+ ...|+|+|.+|--
T Consensus 236 ~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~~----p~-~--pvi~G~v~t~~~a~~~-~~~Gad~I~vg~g~g~ 307 (491)
T 1zfj_A 236 ERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHF----PN-R--TLIAGNIATAEGARAL-YDAGVDVVKVGIGPGS 307 (491)
T ss_dssp HHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHC----SS-S--CEEEEEECSHHHHHHH-HHTTCSEEEECSSCCT
T ss_pred HHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHHHC----CC-C--cEeCCCccCHHHHHHH-HHcCCCEEEECccCCc
Confidence 4566666778988877543211 12223333 22 1 2456667888999888 8999999988731
Q ss_pred ---CC--CCCC---cc-hhhh---hhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 219 ---EG--QKAD---VI-ENSL---FTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 219 ---Tk--~~~g---~~-~~~~---~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|. ...+ +. ..++ +...++||+|-||| ++.++.+++++||++|.+-++...
T Consensus 308 ~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~ 370 (491)
T 1zfj_A 308 ICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG 370 (491)
T ss_dssp TBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred ceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhC
Confidence 10 1111 11 2233 23468999999999 588899999999999988776653
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.05 E-value=0.073 Score=55.75 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999963
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.05 E-value=0.074 Score=55.12 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999963
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.074 Score=55.95 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44579999999999999999999963
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=92.00 E-value=0.049 Score=54.11 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=25.1
Q ss_pred EEEEeCCCCCHHHHHHHHHCCC--CCCCCCCCccce
Q 002437 367 LVIVGEYNSGKSSVINALLGKR--YLKDGVVPTTNE 400 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~~--~~~~~~~~tT~~ 400 (921)
|+|+|++|+|||||++.|+... .+......||+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 7899999999999999998653 223345556654
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.17 Score=52.88 Aligned_cols=187 Identities=11% Similarity=-0.010 Sum_probs=106.4
Q ss_pred EEEEcCCCC-CCCchHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHhhcCceEEecCc---HHHH-HhCCCC
Q 002437 88 LQLEPHQVL-AGGDALDLIDEAVAKFVGIVVLNGGEAS--GKSVYEAACLLKSVVKDRALFLIAER---VDIA-AAVNAS 160 (921)
Q Consensus 88 lylit~~~~-~~~~~~~~~~~~l~~g~~~vqlR~k~~~--~~~~~~~a~~l~~~~~~~~~~ivnd~---~dla-~~~~a~ 160 (921)
+..+.||.- ..++..+.++.+...|.+.|.+=.-+.+ ...+.+....+++.+ ..+++++.. -+.. ..-+||
T Consensus 41 ~~~liDPdK~~~~~~~~~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~--~lPvil~fPP~~g~~~~i~~~aD 118 (286)
T 3vk5_A 41 PVHIIDPFKVPVTEAVEKAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAAT--PLPVVLHFPPRPGAGFPVVRGAD 118 (286)
T ss_dssp EEEEECTTTSCHHHHHHHHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHC--SSCEEEECCCBTTTBSCCCTTCS
T ss_pred ceEEECCCCCCcHHHHHHHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhC--CCCEEEECCCCCCCccccccCCC
Confidence 333445543 2335556788888999999998722234 455555566555544 578888322 1111 112688
Q ss_pred eEEc----CCCCCCH-HHH--HH----hc----ccCC---CC-------c-cccCeEE-EecCCHHHH------Hccccc
Q 002437 161 GVLL----SDQGLPA-IVA--RN----TM----KDSM---SE-------S-VVLPLVG-RNVQTLDAA------FNASSS 207 (921)
Q Consensus 161 GvHL----~~~~l~~-~~~--r~----~~----~~~~---~~-------~-~~~~~ig-~S~h~~~e~------~~A~~~ 207 (921)
++-+ ++.+-.. ..+ .. .+ .+++ |. + +-+..++ +...+++.+ ..+ ..
T Consensus 119 a~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa~~g-ad 197 (286)
T 3vk5_A 119 ALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVA-RA 197 (286)
T ss_dssp EEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHHHHH-HH
T ss_pred EEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHHHHH-HH
Confidence 7654 3333111 111 10 00 0000 00 0 0001122 112232222 233 45
Q ss_pred CCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeecccccchHHHHHhh
Q 002437 208 EGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 208 ~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~~~~~~~~~ 278 (921)
.|.++|.+- .+..+..++ .+.+++.+ .+|+++-||| +++++.++.++||++|.+-++.++.-|+++++.+
T Consensus 198 ~G~~lV~LD-~~~~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d~~Pelv~e~ 271 (286)
T 3vk5_A 198 FGFHMVYLY-SRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPDWRSALAEI 271 (286)
T ss_dssp TTCSEEEEE-CSSSCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSSTTHHHHHHHH
T ss_pred cCCCEEEEc-CCCCcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcCCCHHHHHHH
Confidence 677888776 343333333 57788888 8999999999 5788999999999999999999876577777776
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.083 Score=57.75 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=50.8
Q ss_pred HHcccccCCCCEEEeCCC--CC----CCCCc--c-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeeccccc
Q 002437 201 AFNASSSEGADFLVCCFG--EG----QKADV--I-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLEDLSL 269 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpv--Tk----~~~g~--~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a~~~~ 269 (921)
++.. .+.|+||+-++-- .. ..++. . ...+++.+++||++-||| +++++.++++.| |+.|++.++.+..
T Consensus 235 a~~L-~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lan 313 (340)
T 3gr7_A 235 AKRM-KEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRN 313 (340)
T ss_dssp HHHH-HHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred HHHH-HHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhC
Confidence 3344 6789999998532 11 12232 2 367778889999999999 588999999999 9999999988764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.076 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.++++|+.|||||||++.|.|-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999996
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.082 Score=54.89 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999999963
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.08 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.++++|+.|||||||++.|.|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999996
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=91.92 E-value=0.077 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999963
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.1 Score=55.98 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.+...-.++|+|++|+|||||++.|.|-
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 5566678999999999999999999874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.082 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999999963
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.084 Score=56.02 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34478999999999999999999963
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.093 Score=57.64 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=52.3
Q ss_pred CCHHHHHcccccCCCCEEEeC-CC-C--------CC--------CCCcc----hhhhhhcC-CCCEEEEcCCC-ccChHH
Q 002437 196 QTLDAAFNASSSEGADFLVCC-FG-E--------GQ--------KADVI----ENSLFTNV-KIPIFIMNASP-LVDVSK 251 (921)
Q Consensus 196 h~~~e~~~A~~~~gaDyv~~g-pv-T--------k~--------~~g~~----~~~~~~~~-~~Pv~aiGGi~-~~~~~~ 251 (921)
-+.+++..| .+.|+|+|.++ +. | +. ..|+. ..++.+.. ++||++-|||. ++++.+
T Consensus 190 ~~~~~a~~a-~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k 268 (349)
T 1p0k_A 190 MSKASAGKL-YEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAK 268 (349)
T ss_dssp CCHHHHHHH-HHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHH
T ss_pred CCHHHHHHH-HHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHH
Confidence 468889988 89999999995 21 2 21 22332 24555554 89999999995 889999
Q ss_pred HHHcCCcEEEEeecccc
Q 002437 252 FLKSGASGFVISLEDLS 268 (921)
Q Consensus 252 ~~~~Ga~gva~~~a~~~ 268 (921)
++.+||++|.+.++.+.
T Consensus 269 ~l~~GAd~V~iG~~~l~ 285 (349)
T 1p0k_A 269 AIALGASCTGMAGHFLK 285 (349)
T ss_dssp HHHTTCSEEEECHHHHH
T ss_pred HHHcCCCEEEEcHHHHH
Confidence 99999999987775544
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.063 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.-.++++|+.|||||||++.|.|.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999986
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.12 Score=51.81 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.4
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.......|+++|.+||||||+.+.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3456678999999999999999999885
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.093 Score=56.66 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
......|+|+|++|||||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456789999999999999999999874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.088 Score=55.45 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999999863
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.088 Score=55.04 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999963
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=91.54 E-value=0.77 Score=47.84 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=37.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh----cCCe-EEEEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ----WKKK-VVFVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~----~~~~-vivVlNK~D~~ 504 (921)
+++||||||......-. ..-....+|.+|+|+..+......-..+++.+.. .+.+ +-+|+|+.+..
T Consensus 117 D~iiiD~~~~~~~~~~~---~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 117 DYVFYDVLGDVVCGGFA---MPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp SEEEEEEECSSCSTTTT---HHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CEEEEeCCchhhhhhhh---hhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 68999999853211000 1111257999999998763222222234444443 2345 46899998743
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.093 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+.....|+|+|++||||||+.+.|...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445678999999999999999999764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.094 Score=54.37 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.0
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+.....|+++|+.|||||||++.|.+.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346678999999999999999998763
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=91.44 E-value=0.09 Score=63.24 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=54.8
Q ss_pred HHcccccCCCCEEEeC-----CC----CCC-CCC--cc-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeec
Q 002437 201 AFNASSSEGADFLVCC-----FG----EGQ-KAD--VI-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLE 265 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~g-----pv----Tk~-~~g--~~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a 265 (921)
++.+ .+.|+||+.++ |. ++. +++ +. ...+++.+++||++.||| +++++.++++.| |++|++.++
T Consensus 234 a~~l-~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~ 312 (671)
T 1ps9_A 234 AQAI-EAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARP 312 (671)
T ss_dssp HHHH-HHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTH
T ss_pred HHHH-HhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHH
Confidence 3444 67899999886 22 111 111 22 367788889999999999 799999999998 999999998
Q ss_pred ccccchHHHHHhh
Q 002437 266 DLSLFNDGVLSQM 278 (921)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (921)
.+.. +++..++
T Consensus 313 ~l~~--P~l~~k~ 323 (671)
T 1ps9_A 313 FLAD--AELLSKA 323 (671)
T ss_dssp HHHC--TTHHHHH
T ss_pred HHhC--cHHHHHH
Confidence 8865 3455554
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.077 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...|+++|.+||||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999774
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.067 Score=57.55 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|++|||||||++.|.|-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44589999999999999999999853
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=91.34 E-value=0.095 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..+.++|+|.+|+|||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999874
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.093 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
....|+++|.+||||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999753
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=91.29 E-value=0.32 Score=51.53 Aligned_cols=65 Identities=11% Similarity=-0.020 Sum_probs=36.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh----cCCe-EEEEEeCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ----WKKK-VVFVLNKSDL 503 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~----~~~~-vivVlNK~D~ 503 (921)
+++||||||......- ...-....+|.+|+|+..+......-..+++.+.. .+.+ +-+|+|+.+.
T Consensus 120 D~ViID~~~~~~~~~~---~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 120 DFVFYDVLGDVVCGGF---AMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp SEEEEEEECSSCCTTT---THHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CEEEEeCCCccccchh---hhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 6899999985311100 01112257999999998763221222234444432 2445 4588999873
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=91.22 E-value=0.12 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH---CCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL---GKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl---g~~ 388 (921)
.+..|+++|++||||||+++.|. |..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35689999999999999999999 753
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.056 Score=52.92 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..|+|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=91.05 E-value=0.11 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 002437 365 FLLVIVGEYNSGKSSVINAL 384 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaL 384 (921)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.092 Score=57.79 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
-.|+|+|++|||||||+++|+|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999874
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.15 Score=50.91 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.....|+++|.+||||||+.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=90.96 E-value=0.11 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999964
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.11 Score=57.36 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.++|+|++|||||||+|+|++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999985
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=90.87 E-value=0.1 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..++++|++||||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3688999999999999999986
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.11 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
++.|+++|.+||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=90.83 E-value=0.23 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.....|+++|.+||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.077 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=16.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH-CC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL-GK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl-g~ 387 (921)
....++++|++|||||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34579999999999999999999 75
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.15 Score=53.37 Aligned_cols=153 Identities=9% Similarity=-0.047 Sum_probs=90.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEEec-----CcHHHHHhCCCCeEEcCCCCCC----
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFLIA-----ERVDIAAAVNASGVLLSDQGLP---- 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~ivn-----d~~dla~~~~a~GvHL~~~~l~---- 170 (921)
+..+......+.|++.+++=+=+... .+.++++...+ ..++.+. .+.+-.. .||+-|-+|..-+.
T Consensus 39 dp~~~A~~~~~~Ga~~l~vvDL~~~n---~~~i~~i~~~~--~~pv~vgGGir~~~~~~~l-~Ga~~Viigs~a~~~~g~ 112 (260)
T 2agk_A 39 PSSYYAKLYKDRDVQGCHVIKLGPNN---DDAAREALQES--PQFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGH 112 (260)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEESSSC---HHHHHHHHHHS--TTTSEEESSCCTTTHHHHT-TTCSCEEECGGGBCTTCC
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCC---HHHHHHHHhcC--CceEEEeCCCCHHHHHHHh-cCCCEEEECcHHHhhcCC
Confidence 45577777778888776663312111 22333333322 2233321 1344444 78999999876442
Q ss_pred --HHHHHHh---cccCCCCccccCeEEEecC--------------------C-H-HHHHcccccCCCCEEEeCCCCC---
Q 002437 171 --AIVARNT---MKDSMSESVVLPLVGRNVQ--------------------T-L-DAAFNASSSEGADFLVCCFGEG--- 220 (921)
Q Consensus 171 --~~~~r~~---~~~~~~~~~~~~~ig~S~h--------------------~-~-~e~~~A~~~~gaDyv~~gpvTk--- 220 (921)
+...+.+ +| ++ .+ +++.+|. + . +-+..+ .+. |+.+++-.+|+
T Consensus 113 ~~p~~~~~~~~~~g---~~-~i--vv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~-~~~-a~~il~t~i~~dG~ 184 (260)
T 2agk_A 113 FQLKRLERLTELCG---KD-RI--VVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFREL-RKY-TNEFLIHAADVEGL 184 (260)
T ss_dssp BCHHHHHHHHHHHC---GG-GE--EEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHH-TTT-CSEEEEEC------
T ss_pred CCHHHHHHHHHHhC---cC-cE--EEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHH-HHh-cCEEEEEeeccccC
Confidence 2222222 22 23 22 3444442 1 2 445565 677 99999977743
Q ss_pred -CCCCcc-hhhhhhcC----CCCEEEEcCC-CccChHHHHHc--CCcEEEEeecc
Q 002437 221 -QKADVI-ENSLFTNV----KIPIFIMNAS-PLVDVSKFLKS--GASGFVISLED 266 (921)
Q Consensus 221 -~~~g~~-~~~~~~~~----~~Pv~aiGGi-~~~~~~~~~~~--Ga~gva~~~a~ 266 (921)
..+.++ .+.+++.+ ++||+|-||| +++++..+.+. |++||.+-+|.
T Consensus 185 ~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 185 CGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp -CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred cCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 334444 57888888 9999999999 58999999987 99999877775
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.12 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.518 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999999863
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=90.66 E-value=0.15 Score=55.99 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=49.8
Q ss_pred ccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeeccccc
Q 002437 206 SSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSL 269 (921)
Q Consensus 206 ~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~ 269 (921)
.+.|+||+-++.-+ .|.. ...+++.+++||++.|||+++++.++++.| ++.|++.++.+..
T Consensus 260 ~~~Gvd~i~v~~~~---~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~G~aD~V~iGR~~lad 322 (361)
T 3gka_A 260 GRRRIAFLFARESF---GGDAIGQQLKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIAN 322 (361)
T ss_dssp HHTTCSEEEEECCC---STTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHcCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhC
Confidence 56799999886543 1113 467788889999999999999999999998 9999998888765
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=0.38 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.....|+++|..|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=90.57 E-value=3.5 Score=44.95 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=30.0
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EEEEeCCCCC
Q 002437 463 ADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VFVLNKSDLY 504 (921)
Q Consensus 463 aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-ivVlNK~D~~ 504 (921)
.+.+++|+..+.....+-...+..++..+.|+ -+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 47888888776543344455777788888876 4789998765
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=90.51 E-value=0.13 Score=56.46 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34578999999999999999999964
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=90.44 E-value=0.68 Score=47.84 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=93.0
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCC---HHHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEAS---GKSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~---~~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~ 170 (921)
+..+......+.|++.+++=+=+.. .....+.++++...| ..++-+-. +.+-....||+-|-++..-+.
T Consensus 32 dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~--~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~ 109 (243)
T 4gj1_A 32 NPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEV--SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIK 109 (243)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHC--CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTT
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhc--CCCeEeccccccHHHHHHHHHcCCCEEEEcccccc
Confidence 4456676777889998888541110 001123344444333 56777643 445566789999999877654
Q ss_pred H----HHHHHhcccCCCCccccCeEEEe----------cC--------CH-HHHHcccccCCCCEEEeCCC----CCCCC
Q 002437 171 A----IVARNTMKDSMSESVVLPLVGRN----------VQ--------TL-DAAFNASSSEGADFLVCCFG----EGQKA 223 (921)
Q Consensus 171 ~----~~~r~~~~~~~~~~~~~~~ig~S----------~h--------~~-~e~~~A~~~~gaDyv~~gpv----Tk~~~ 223 (921)
- ..+-..+| ++ .+ .++.- +| ++ +-+.+. ...|+.-+++-.+ |...+
T Consensus 110 ~p~li~e~~~~~g---~q-~i--v~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~-~~~g~~eil~t~Id~DGt~~G~ 182 (243)
T 4gj1_A 110 DATLCLEILKEFG---SE-AI--VLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY-SNKGLKHILCTDISKDGTMQGV 182 (243)
T ss_dssp CHHHHHHHHHHHC---TT-TE--EEEEEEEESSSEEEC--------CCBHHHHHHHH-HTTTCCEEEEEETTC-----CC
T ss_pred CCchHHHHHhccc---Cc-eE--EEEEEEEeCCCCEEEecCceecccchHHHHHHHH-hhcCCcEEEeeeecccccccCC
Confidence 2 12223334 33 22 12221 22 23 335566 6889999988777 44555
Q ss_pred Ccc-hhhhhhcC-CCCEEEEcCCC-ccChHHHHHcCCcEEEEeecc
Q 002437 224 DVI-ENSLFTNV-KIPIFIMNASP-LVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 224 g~~-~~~~~~~~-~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~ 266 (921)
.++ .+.+++.+ ++||+|-||++ .+++..+ +.+++|+.+.+|-
T Consensus 183 d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al 227 (243)
T 4gj1_A 183 NVRLYKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIVGKAL 227 (243)
T ss_dssp CHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHH
T ss_pred CHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHH
Confidence 555 57777766 69999999995 7788877 5679998765543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.16 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+.|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=90.40 E-value=0.11 Score=56.73 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
-.++|+|++|||||||+|+|.|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999985
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.17 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=21.7
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..+..|+++|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999854
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.15 Score=56.02 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34478999999999999999999964
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=90.28 E-value=0.1 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.++++|+.|+|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999999874
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.24 E-value=0.17 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+..|+++|.+||||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=0.15 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
...|+++|.+||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.18 Score=55.49 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=52.7
Q ss_pred ccCCCCEEEeCCCCCCCCCcc-hhhhhhcCCCCEEEEcCCCccChHHHHHcC-CcEEEEeecccccchHHHHHhh
Q 002437 206 SSEGADFLVCCFGEGQKADVI-ENSLFTNVKIPIFIMNASPLVDVSKFLKSG-ASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 206 ~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~G-a~gva~~~a~~~~~~~~~~~~~ 278 (921)
.+.|+||+-++.-+ .|.. ...+++.+++||++.||++++++.++++.| ++.|++.++.+... ++.+++
T Consensus 252 ~~~Gvd~i~v~~~~---~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~aD~V~iGR~~lanP--dl~~k~ 321 (362)
T 4ab4_A 252 GKRGIAFICSRERE---ADDSIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANP--DLPARL 321 (362)
T ss_dssp HHTTCSEEEEECCC---CTTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT--THHHHH
T ss_pred HHhCCCEEEECCCC---CCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCc--HHHHHH
Confidence 56799999886543 1213 467788889999999999999999999998 99999988887652 344444
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.21 Score=50.67 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.1
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRY 389 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~ 389 (921)
+...-.++++|++|||||||++.|.|.-.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456899999999999999999998543
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.96 E-value=0.21 Score=56.31 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=49.6
Q ss_pred HHcccccCCCCEEEeCCCCCCC----------CCc----------c-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcC
Q 002437 201 AFNASSSEGADFLVCCFGEGQK----------ADV----------I-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSG 256 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvTk~~----------~g~----------~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~G 256 (921)
+..+ .+.|+|+|.++.-|... -|+ . ...+++.+ ++||++.||| +++++.+++.+|
T Consensus 317 A~~~-~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aG 395 (443)
T 1tv5_A 317 ADVL-LETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAG 395 (443)
T ss_dssp HHHH-HHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTT
T ss_pred HHHH-HHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 4455 78899999998653321 111 1 24566667 8999999999 588899999999
Q ss_pred CcEEEEeeccc
Q 002437 257 ASGFVISLEDL 267 (921)
Q Consensus 257 a~gva~~~a~~ 267 (921)
|+.|.+.++.+
T Consensus 396 Ad~Vqigrall 406 (443)
T 1tv5_A 396 ASVCQLYSCLV 406 (443)
T ss_dssp EEEEEESHHHH
T ss_pred CCEEEEcHHHH
Confidence 99999888855
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=89.94 E-value=0.23 Score=52.96 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++.|+|+|.+|||||||.+.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999988753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.16 Score=55.61 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999964
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=0.13 Score=57.80 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.-.|+|+|++|||||||+++|+|.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999985
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.31 Score=51.33 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=45.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLY 504 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~ 504 (921)
+++|||||+...... +......+|.+|+|+..+......-...++.+...+.+++ +|+|++|..
T Consensus 193 D~VIIDtpp~~~~~d-----~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 193 NFVIIDTPPVNTVTD-----AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp SEEEEECCCTTTCSH-----HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CEEEEeCCCCchHHH-----HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 689999999743221 1223356899999999986554444566777777777776 899999864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=89.74 E-value=0.17 Score=56.02 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34478999999999999999999964
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.72 E-value=0.22 Score=54.31 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=48.9
Q ss_pred HHcccccCCCCEEEeCCCCC-------C----C----CCc-------c-hhhhhhcC--CCCEEEEcCC-CccChHHHHH
Q 002437 201 AFNASSSEGADFLVCCFGEG-------Q----K----ADV-------I-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLK 254 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvTk-------~----~----~g~-------~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~ 254 (921)
+..+ .+.|+|+|.++.-|. + . .|. . ...+++.+ ++||++-||| +++++.++++
T Consensus 231 a~~l-~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~ 309 (336)
T 1f76_A 231 ADSL-VRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIA 309 (336)
T ss_dssp HHHH-HHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHH-HHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH
Confidence 4566 788999999874311 0 0 121 1 24566666 8999999999 4889999999
Q ss_pred cCCcEEEEeecccc
Q 002437 255 SGASGFVISLEDLS 268 (921)
Q Consensus 255 ~Ga~gva~~~a~~~ 268 (921)
+||++|.+.++.+.
T Consensus 310 ~GAd~V~igr~~l~ 323 (336)
T 1f76_A 310 AGASLVQIYSGFIF 323 (336)
T ss_dssp HTCSEEEESHHHHH
T ss_pred CCCCEEEeeHHHHh
Confidence 99999988887653
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=0.17 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..|+++|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.15 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+.|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=89.62 E-value=0.14 Score=59.06 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++|+|++||||||++|+|+|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345999999999999999999984
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=89.52 E-value=0.13 Score=58.92 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.+.+|+++|.+|+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.18 Score=55.40 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34578999999999999999999963
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=89.48 E-value=3 Score=44.91 Aligned_cols=42 Identities=5% Similarity=-0.026 Sum_probs=29.5
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeE-EEEEeCCCCC
Q 002437 463 ADLVLFVISADRPLTESEVVFLRYTQQWKKKV-VFVLNKSDLY 504 (921)
Q Consensus 463 aD~il~V~da~~~~t~~e~~~l~~l~~~~~~v-ivVlNK~D~~ 504 (921)
.+.+++|+..+.....+-...+..++..+.|+ -+|+|++...
T Consensus 222 ~~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 222 RTSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CCeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 35888998776433344445777888888776 4789998754
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=0.15 Score=56.20 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=50.5
Q ss_pred HHcccccCCCCEEEeCCC--C---C-C-CCCc--c-hhhhhhcCCCCEEEEcCC-CccChHHHHHcC-CcEEEEeecccc
Q 002437 201 AFNASSSEGADFLVCCFG--E---G-Q-KADV--I-ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSG-ASGFVISLEDLS 268 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpv--T---k-~-~~g~--~-~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~G-a~gva~~~a~~~ 268 (921)
++.. .+.|+||+-++.- . . + .++. . ...+++.+++||++.||| +++++.++++.| |+.|++.++.+.
T Consensus 252 a~~L-~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 252 ARRF-KAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA 330 (363)
T ss_dssp HHHH-HHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred HHHH-HHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence 3344 5679999988742 1 1 1 1222 2 366777789999999999 589999999999 999999888775
Q ss_pred c
Q 002437 269 L 269 (921)
Q Consensus 269 ~ 269 (921)
.
T Consensus 331 n 331 (363)
T 3l5l_A 331 D 331 (363)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=89.41 E-value=0.17 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.40 E-value=0.18 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34478999999999999999999964
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=0.18 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..-.|+|+|++||||||++++|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999884
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=0.22 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.++.|+|+|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999764
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=89.34 E-value=0.22 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.++.|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999965
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=89.31 E-value=0.14 Score=55.34 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..+.++|+|..|||||||+|.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35688999999999999999999763
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=89.27 E-value=0.22 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl 385 (921)
....|+++|++||||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=89.19 E-value=0.19 Score=55.47 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3478999999999999999999964
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=1.2 Score=61.52 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=98.6
Q ss_pred HHHHHHHhcC-CcEEEEeCCCC-CHHHHHHHHHHHHHHhhcC----ceEEe-c-----------CcHHHHHhCC--CCeE
Q 002437 103 DLIDEAVAKF-VGIVVLNGGEA-SGKSVYEAACLLKSVVKDR----ALFLI-A-----------ERVDIAAAVN--ASGV 162 (921)
Q Consensus 103 ~~~~~~l~~g-~~~vqlR~k~~-~~~~~~~~a~~l~~~~~~~----~~~iv-n-----------d~~dla~~~~--a~Gv 162 (921)
+.+.+...+| +..+ -..+. +.+.+.+.++++++++..+ +-++. | ..++.+.+.| +|||
T Consensus 443 ~LaaAVs~AGglG~l--~~~g~~~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv 520 (3089)
T 3zen_D 443 KIVAAAANAGHWAEL--AGGGQVTEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGL 520 (3089)
T ss_dssp HHHHHHHHTTCEEEE--CSTTCCSHHHHHHHHHHHHHHSCTTCCCEEEEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred HHHHHHHhCCCceee--cCCCCCCHHHHHHHHHHHHHhcCCCCceeechhhcChhhhhhccCHHHHHHHHHHcCCCceEE
Confidence 3343444444 4433 23333 7788899999999988532 22332 2 2345677778 8999
Q ss_pred EcCCCCCC-HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCC------EEEe-CCCCCCCCCcc-----h--
Q 002437 163 LLSDQGLP-AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGAD------FLVC-CFGEGQKADVI-----E-- 227 (921)
Q Consensus 163 HL~~~~l~-~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaD------yv~~-gpvTk~~~g~~-----~-- 227 (921)
-++. ++| ..++..+...-+..+ +.+|...+-+.+++.++ .+.|+| +|++ |+--.-|.|.. .
T Consensus 521 ~~~a-G~P~~ee~~~~i~~l~~~G--i~~i~~~~~t~~~a~~~-~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~ 596 (3089)
T 3zen_D 521 VVSA-GIPDLEEAVDIIDELNEVG--ISHVVFKPGTVEQIRSV-IRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLA 596 (3089)
T ss_dssp EEES-SCCCHHHHHHHHTSTTHHH--HCSEEECCCSHHHHHHH-HHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHH
T ss_pred EEeC-CCCchhHhHHHHHHHHHcC--CEEEEEeCCCHHHHHHH-HHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHH
Confidence 8876 666 444444331000011 12577678888888777 677777 3333 32212233322 2
Q ss_pred --hhhhhcCCCCEEEEcCC-CccChHHHH-----------HcCCcEEEEeecccc
Q 002437 228 --NSLFTNVKIPIFIMNAS-PLVDVSKFL-----------KSGASGFVISLEDLS 268 (921)
Q Consensus 228 --~~~~~~~~~Pv~aiGGi-~~~~~~~~~-----------~~Ga~gva~~~a~~~ 268 (921)
..+++..++||+|-||| +++.+..++ ..||+||.|-.+-+.
T Consensus 597 ~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~ 651 (3089)
T 3zen_D 597 TYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMA 651 (3089)
T ss_dssp HHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTT
T ss_pred HHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHh
Confidence 45667789999999999 578899999 999999998555544
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=0.97 Score=50.72 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.+..|+++|.+||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=89.05 E-value=0.2 Score=55.31 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578999999999999999999964
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=0.21 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+..|.++|.+||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999753
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=88.99 E-value=0.3 Score=53.78 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=48.5
Q ss_pred HHcccccCCCCEEEeCCCCCC------C------CCc----------c-hhhhhhcC--CCCEEEEcCC-CccChHHHHH
Q 002437 201 AFNASSSEGADFLVCCFGEGQ------K------ADV----------I-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLK 254 (921)
Q Consensus 201 ~~~A~~~~gaDyv~~gpvTk~------~------~g~----------~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~ 254 (921)
+..+ .+.|+|.|.+..-|.. + -|+ . ...+++.+ ++||++.||| +++++.+++.
T Consensus 240 a~~~-~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~ 318 (367)
T 3zwt_A 240 ASVV-KELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIR 318 (367)
T ss_dssp HHHH-HHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH
T ss_pred HHHH-HHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH
Confidence 3344 6789999998754211 0 122 1 24566677 8999999999 5888999999
Q ss_pred cCCcEEEEeeccc
Q 002437 255 SGASGFVISLEDL 267 (921)
Q Consensus 255 ~Ga~gva~~~a~~ 267 (921)
+||++|.+.++.+
T Consensus 319 ~GAd~V~vgra~l 331 (367)
T 3zwt_A 319 AGASLVQLYTALT 331 (367)
T ss_dssp HTCSEEEESHHHH
T ss_pred cCCCEEEECHHHH
Confidence 9999999988875
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.91 E-value=0.19 Score=50.23 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+..|+++|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.87 E-value=0.21 Score=48.85 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
....|+++|.+||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999863
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.79 E-value=0.26 Score=48.91 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.++.|+++|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=88.77 E-value=0.26 Score=48.39 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.....|+++|.+||||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998653
|
| >2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} | Back alignment and structure |
|---|
Probab=88.72 E-value=6.4 Score=34.47 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=45.0
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002437 871 HLENFVTKVGKPYQDAAQLKLDRLSEIQDELSNVQEKIQTLQVEIQNLH 919 (921)
Q Consensus 871 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~ 919 (921)
..+.-|+..++.|+..+..|...=++++.+.+.++.++..|+.+.++|.
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 4677888899999999999999999999999999999999999999874
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.69 E-value=0.25 Score=49.28 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
....|+++|.+||||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=88.68 E-value=0.22 Score=49.48 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+.|+|+|.+||||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999865
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=88.68 E-value=0.44 Score=54.92 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=54.0
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeCCC------CC--CCCCcc----hhhhh---hcC------CCCEEEEcCC-Ccc
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCCFG------EG--QKADVI----ENSLF---TNV------KIPIFIMNAS-PLV 247 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~gpv------Tk--~~~g~~----~~~~~---~~~------~~Pv~aiGGi-~~~ 247 (921)
++.-.+-+.+++..+ .+.|+|++.+|-- |. .+.|.. ..++. ... .+||+|-||| ++.
T Consensus 287 Vi~G~V~t~~~a~~l-~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~ 365 (503)
T 1me8_A 287 VGAGNIVDGEGFRYL-ADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDY 365 (503)
T ss_dssp EEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHH
T ss_pred EeeccccCHHHHHHH-HHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHH
Confidence 555678889998888 7999999987631 22 122332 12332 222 6999999999 588
Q ss_pred ChHHHHHcCCcEEEEeecc
Q 002437 248 DVSKFLKSGASGFVISLED 266 (921)
Q Consensus 248 ~~~~~~~~Ga~gva~~~a~ 266 (921)
++..++++||++|.+-+..
T Consensus 366 di~kAlalGA~~V~iG~~~ 384 (503)
T 1me8_A 366 HMTLALAMGADFIMLGRYF 384 (503)
T ss_dssp HHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHcCCCEEEECchh
Confidence 8999999999999765433
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.17 Score=54.52 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=35.9
Q ss_pred hhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 228 NSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 228 ~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
..+++.+ ++||++.||| +++++.+++.+||++|.+.++.+.
T Consensus 233 ~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 233 RAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp HHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 5666777 8999999999 688999999999999999988874
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=0.26 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.++.|+|+|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.57 E-value=0.23 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34578999999999999999999953
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 921 | ||||
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-18 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 2e-14 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 2e-14 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 4e-08 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 5e-08 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 1e-07 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 1e-06 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 3e-06 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 6e-06 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 1e-05 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 2e-05 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 2e-05 | |
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 3e-05 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 4e-05 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 1e-04 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 2e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 2e-04 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 3e-04 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 5e-04 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.001 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 0.001 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 0.002 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 0.002 | |
| d2tpsa_ | 226 | c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus | 0.002 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.002 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 0.002 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 0.002 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.003 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 0.003 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 0.003 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 0.004 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 0.004 |
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.1 bits (215), Expect = 1e-18
Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 46/240 (19%)
Query: 315 GFVKFEDREKQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDE-PFLLVIVGEY 373
G+ K + +++I E +L I++ +A + S + DA+ +ID + + GE
Sbjct: 9 GYFKKFNTGRKIISQE---ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGET 65
Query: 374 NSGKSSVINALLG-----KRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICY 428
SGKSS IN L G + K GVV T E + +
Sbjct: 66 GSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-------------------- 105
Query: 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ 488
+ ++ D PG E+ + F+I + ++++ +
Sbjct: 106 -----IPNVVFWDLPGIGSTNFPPDTYLEKMKFY-EYDFFIIISATRFKKNDIDIAKAIS 159
Query: 489 QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL-----------NIENVTIYPVSA 537
KK+ FV K D E +F KE ++ + I I+ +S
Sbjct: 160 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSN 219
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 72.9 bits (178), Expect = 2e-14
Identities = 49/286 (17%), Positives = 92/286 (32%), Gaps = 53/286 (18%)
Query: 347 LMEEVSLLIDAVSQIDEPFL----LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT 402
L+ ++ L D + + L +V+VG +SGKSSV+ ++G+ +L G T
Sbjct: 3 LIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPL 62
Query: 403 FLRFSDLA-------------------------SEEQQRCERHPDGQ-----------YI 426
L+ + L SE ++ R D
Sbjct: 63 ILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPIN 122
Query: 427 CYLPSPILKEMIIVDTPG---------TNVILQRQQRLTEEFV--PRADLVLFVISADRP 475
+ SP + + +VD PG I Q+ +R+ ++ A +V +
Sbjct: 123 LKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182
Query: 476 LTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIE-NVTIYP 534
+ + K+ + V+ K DL + E ++ N +
Sbjct: 183 ANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQED 242
Query: 535 VSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTF-DKLEKLLYS 579
+ A+ ++ L K+H + L KLL
Sbjct: 243 IIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMF 288
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.0 bits (178), Expect = 2e-14
Identities = 46/277 (16%), Positives = 93/277 (33%), Gaps = 46/277 (16%)
Query: 347 LMEEVSLLIDAVSQID-----EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI 401
L+ V+ L DA S I + + +VG ++GKSSV+ +G+ +L G T
Sbjct: 4 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 63
Query: 402 TFLRFSDLASEEQQRC----ERHPDGQYIC------------------------YLPSPI 433
L+ + +E + ++ D + + + SP
Sbjct: 64 LVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPH 123
Query: 434 LKEMIIVDTPGTNVILQRQQ---------RLTEEFVPRAD-LVLFVISADRPLTESEVV- 482
+ + +VD PG + Q + +FV + + L+L V A+ L S+ +
Sbjct: 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183
Query: 483 FLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIE-NVTIYPVSARSTL 541
+ ++ + V+ K DL + + + + N + + + +
Sbjct: 184 IAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDI 243
Query: 542 EAKLSVSSAVGKDHSELSVNDSHWRINTF-DKLEKLL 577
A L+ H L + L
Sbjct: 244 TAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQL 280
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 52.0 bits (123), Expect = 4e-08
Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 9/172 (5%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYIC 427
+ G N GKS++I L GK+ V R + + P ++
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKK------VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMM 57
Query: 428 YLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT 487
LP + + + + +A + R +V F ++
Sbjct: 58 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117
Query: 488 QQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
++ + +NK D +N +E I+F+ E L+ + P+SA+
Sbjct: 118 RELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKF 166
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 51.1 bits (121), Expect = 5e-08
Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 30/173 (17%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+VIVG+ N GKS+++N LL + T+ R + E G
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNED-----RAIVTDIPGTTR-------DVISEEIVIRGILF 50
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRY 486
+ + ++ +++ + T + + +AD+VLFV+ A PL E + L
Sbjct: 51 RIVDTAGVRSET------NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILER 104
Query: 487 TQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ + VV N E++ + + + +SA
Sbjct: 105 IKNKRYLVVINKVDVVEKINEEEIKNKLGTDRH------------MVKISALK 145
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 50.4 bits (119), Expect = 1e-07
Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 17/180 (9%)
Query: 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCER 419
+I + + IVG N GKS++ NA+L K + R E
Sbjct: 4 EITDAIKVAIVGRPNVGKSTLFNAILNKE-----RALVSPIPGTTRD-------PVDDEV 51
Query: 420 HPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTES 479
DG+ ++ + L+ V+ + + E +AD+V+ V+ A + +T
Sbjct: 52 FIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE---KADVVVIVLDATQGITRQ 108
Query: 480 EVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ ++ + V V NK DL + + F K KL I+ + SA
Sbjct: 109 DQRMAGLMERRGRASVVVFNKWDLVVH--REKRYDEFTKLFREKLYFIDYSPLIFTSADK 166
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 48.7 bits (115), Expect = 1e-06
Identities = 24/211 (11%), Positives = 65/211 (30%), Gaps = 39/211 (18%)
Query: 324 KQLIETERSVLLEAIDVIKKASPLMEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINA 383
++ LLE + +K+ + ++++G+ GKSS +N+
Sbjct: 8 NTFAPATQTKLLELLGNLKQ----------------EDVNSLTILVMGKGGVGKSSTVNS 51
Query: 384 LLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443
++G+R + + R G + + +P L E ++
Sbjct: 52 IIGERVVSISPFQSE------------GPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN-- 97
Query: 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ-----WKKKVVFVL 498
++ L + + L + + + + + + K + L
Sbjct: 98 --DMALNIIKSFLLDKTIDVLLYVDRLD-AYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 154
Query: 499 NKSDLYQ-NAFELEEAISFVKENTMKLLNIE 528
+ + +E S E ++++
Sbjct: 155 THAQFSPPDGLPYDEFFSKRSEALLQVVRSG 185
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (109), Expect = 3e-06
Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 38/179 (21%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
++++G+ GKS ++ + ++ TT I F + + +
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDF----------KIKTVDINGKK 50
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
++ I DT G +R + +T + A ++ V T + +
Sbjct: 51 V----------KLQIWDTAGQ----ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 96
Query: 485 RYTQQW----KKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
T + +++ V NKSD+ ++ + KE + SA++
Sbjct: 97 FKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL--------GIPFIESSAKN 147
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 45.5 bits (106), Expect = 6e-06
Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 25/172 (14%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYIC 427
IVG N GKS+++N LLG++ T + E +
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT---EGAYQAIYVDTPGLHM 65
Query: 428 YLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT 487
I + M + +LV+FV+ R + E+V +
Sbjct: 66 EEKRAINRLMNKAASSSIG---------------DVELVIFVVEGTRWTPDDEMVLNKLR 110
Query: 488 QQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ ++ V ++ + A + + + I P+SA +
Sbjct: 111 EGKAPVILAVNKVDNVQEKAD-------LLPHLQFLASQMNFLDIVPISAET 155
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.4 bits (104), Expect = 1e-05
Identities = 21/180 (11%), Positives = 50/180 (27%), Gaps = 39/180 (21%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
F L+++G+ GK+ V+ + + + DG+
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI-------------ELDGK 53
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-- 482
I ++ I DT G +R + +T + A ++ V + +
Sbjct: 54 RI---------KLQIWDTAGQ----ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 100
Query: 483 --FLRYTQQWKKKVVFVLN-KSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ + + + N + E + + SA++
Sbjct: 101 IRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY--------GIKFMETSAKA 152
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 44.2 bits (104), Expect = 2e-05
Identities = 37/206 (17%), Positives = 70/206 (33%), Gaps = 38/206 (18%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDG--Q 424
+ +G + GK+++ AL ++ E+ D A EE+ R G
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENP----NVEVKDYGDIDKAPEERAR------GITI 55
Query: 425 YICYLPSPILKEMI-IVDTPGTNVILQRQQRLTEEFVP-------RADLVLFVISAD--- 473
++ K VD PG +++ + D + V+SA
Sbjct: 56 NTAHVEYETAKRHYSHVDCPG-----------HADYIKNMITGAAQMDGAILVVSAADGP 104
Query: 474 RPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL-LNIENVTI 532
P T E + L +V +NK D+ + L+ V++ + + V +
Sbjct: 105 MPQTR-EHILLARQVG-VPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPV 162
Query: 533 YPVSARSTLEAKLSVSSAVGKDHSEL 558
SA LE + + + +E
Sbjct: 163 IRGSALLALEQ-MHRNPKTRRGENEW 187
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 27/172 (15%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYIC 427
+IVG N GKS++ N L+ K+ + +E+
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKK------------------KAIVEDEEGVTRDPVQDTVEW 45
Query: 428 YLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT 487
Y + L + V ++I Q+ + +T + ADLVLFV+ R +T+ + +
Sbjct: 46 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFL 105
Query: 488 QQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
++ + V NK++ L E VK L E PVSA
Sbjct: 106 RKSTVDTILVANKAEN------LREFEREVKPELYSLGFGE---PIPVSAEH 148
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 44.8 bits (105), Expect = 3e-05
Identities = 28/200 (14%), Positives = 71/200 (35%), Gaps = 15/200 (7%)
Query: 451 RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFEL 510
+ +R E + D+V ++ A P++ + + K + +LNK+D +A
Sbjct: 4 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADK-ADAAVT 60
Query: 511 EEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTF 570
++ + ++ L+I + + + A + V R
Sbjct: 61 QQWKEHFENQGIRSLSINS--VNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALII 118
Query: 571 DKLEKLLYSFLDGS------SSTGKERMRLKLETPIRIAERL-LSSCETLVMKDCQDAKQ 623
+ + S L + TG + +++ + L L ++ +D
Sbjct: 119 -GIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELV 177
Query: 624 DLTLANEMIDSLKEYVMKME 643
L LA + ++K+ ++ ++
Sbjct: 178 GLRLA--VTGAIKDSIINLQ 195
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 19/178 (10%)
Query: 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHP 421
D + G N+GKSS +N L ++ + + + +
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKS----------------LARTSKTPGRTQLINL 57
Query: 422 DGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV 481
+ QR E ++ ++ PL + +
Sbjct: 58 FEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ 117
Query: 482 VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ + V+ +L K+D + + ++ V+E + +V + S+
Sbjct: 118 QMIEWAVDSNIAVLVLLTKADKL-ASGARKAQLNMVREAVLAFN--GDVQVETFSSLK 172
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (98), Expect = 1e-04
Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 40/195 (20%)
Query: 367 LVIVGEYNSGKSSVINALLGK----------RYLKDGVVPTTNEITFLRFSDLASEEQQR 416
+V++G +SGKS+ L+ K ++ K+ + D E++R
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 68
Query: 417 CERHPDGQYICYLPSPILKEMIIVDTPG-----TNVILQRQQRLTEEFVPRADLVLFVIS 471
D + ++ ++D PG N+I Q AD + +I+
Sbjct: 69 -GITIDIALWKFETPK--YQVTVIDAPGHRDFIKNMITGTSQ---------ADCAILIIA 116
Query: 472 ADRPLTESEVVFLRYT--------QQWKKKVVFVLNKSDLYQNAFELEEAIS-----FVK 518
E+ + T ++++ +NK D + + I F+K
Sbjct: 117 GGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIK 176
Query: 519 ENTMKLLNIENVTIY 533
+ + V I
Sbjct: 177 KVGYNPKTVPFVPIS 191
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 25/171 (14%), Positives = 48/171 (28%), Gaps = 24/171 (14%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICY 428
+VG N+GKSS++ A+ TT +
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN-----------------------LGV 42
Query: 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ 488
+ + + D PG + L EF+ ++ E +
Sbjct: 43 VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRK 102
Query: 489 QWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ +L + L ++ + L E + + PVSA +
Sbjct: 103 EVGAYDPALLRRPSLVALNK-VDLLEEEAVKALADALAREGLAVLPVSALT 152
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 44/183 (24%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICY 428
+VG + GKS++++ + + TT DG
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL------------GMVETDDG----- 48
Query: 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEF---VPRADLVLFVISA---------DRPL 476
+ ++ D PG + L +F + R +++ VI D L
Sbjct: 49 ------RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYL 102
Query: 477 TESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVS 536
T ++ + + ++ + V NK D+ + A LE K ++ ++P+S
Sbjct: 103 TINQELSEYNLRLTERPQIIVANKMDMPEAAENLEA---------FKEKLTDDYPVFPIS 153
Query: 537 ARS 539
A +
Sbjct: 154 AVT 156
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 3e-04
Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 29/175 (16%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
F ++I+G + GK+S + + +
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFT--------------------PAFVSTVGIDFKVK 45
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
I I ++ I DT G +R + +T + A + + + + V
Sbjct: 46 TIYRNDKRI--KLQIWDTAGQ----ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 99
Query: 485 RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
+ + L N ++E+ E +L + + SA+
Sbjct: 100 STQIKTYSWDNAQVL---LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD 151
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 5e-04
Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 18/173 (10%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
L+ +G+ GK++ + ++ TT I F +++ +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPK--FITTVGIDF----------REKRVVYNAQGPN 55
Query: 427 CYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRY 486
+ + DT G +R + LT F A L + + V
Sbjct: 56 GSSGKAFKVHLQLWDTAGQ----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 111
Query: 487 TQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
Q L N +L + + +L + + + SA +
Sbjct: 112 QLQANAYCENP--DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 162
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 38.6 bits (88), Expect = 0.001
Identities = 13/61 (21%), Positives = 22/61 (36%)
Query: 368 VIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYIC 427
IVG+ N GKS+++N LLG + P T + + + +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68
Query: 428 Y 428
Sbjct: 69 A 69
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.001
Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 38/183 (20%)
Query: 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHP 421
D F +++VG+ GK+ ++ +L
Sbjct: 4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-------------------TFISTVGIDF 44
Query: 422 DGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTES-- 479
+ + + ++ + DT G +R + +T + A +L + +
Sbjct: 45 RNKVLDVDGVKV--KLQMWDTAGQ----ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI 98
Query: 480 ---EVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVS 536
Y Q ++ ++ + E+ KE + S
Sbjct: 99 QAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY--------GLPFMETS 150
Query: 537 ARS 539
A++
Sbjct: 151 AKT 153
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 38.7 bits (89), Expect = 0.002
Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 29/195 (14%)
Query: 367 LVIVGEYNSGKSSVINALLG----------KRYLKDGVVPTTNEITFLRFSDLASEEQQR 416
L+++G + GKS+++ LL K + F D EE++R
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 65
Query: 417 CERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL 476
I+D PG ++ +AD + V+SA +
Sbjct: 66 GVTINLTFMRFETKK---YFFTIIDAPGHRDFVKNMITGAS----QADAAILVVSAKKGE 118
Query: 477 TESEVVFLRYT--------QQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL---- 524
E+ + T +++ +NK DL + ++ + V + + +
Sbjct: 119 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 178
Query: 525 LNIENVTIYPVSARS 539
N V PV A S
Sbjct: 179 FNTNKVRFVPVVAPS 193
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 38.5 bits (89), Expect = 0.002
Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 16/181 (8%)
Query: 367 LVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYI 426
+ +G + GK+++ A+ G + D A EE+ R
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGG-----AKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 427 CYLPSPILKEMIIVDTPGT-NVILQRQQRLTEEFVPRADLVLFVISA-DRPLTESEVVFL 484
+ D PG + + D + V++A D P+ ++ L
Sbjct: 61 YSTAARHY---AHTDCPGHADYVKNMITGTA-----PLDGCILVVAANDGPMPQTREHLL 112
Query: 485 RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL-LNIENVTIYPVSARSTLEA 543
Q + VV +NK+D Q++ +E ++E + E I SA LE
Sbjct: 113 LARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ 172
Query: 544 K 544
+
Sbjct: 173 R 173
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Score = 38.7 bits (89), Expect = 0.002
Identities = 24/174 (13%), Positives = 61/174 (35%), Gaps = 6/174 (3%)
Query: 96 LAGGDALDLIDEAVAKFVGIVVL---NGGEASGKSVYEAACLLKSVVKDR-ALFLIAERV 151
D + ++ +A+ + G +G++ + A ++ ++ F++ + V
Sbjct: 27 NTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDV 86
Query: 152 DIAAAVNASGV-LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGA 210
++A + A G+ + + V + S + + A +
Sbjct: 87 ELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYP 146
Query: 211 DFLVCCFGEGQKADVIENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGF-VIS 263
Q +IE + IPI + + + + +++GA G +IS
Sbjct: 147 TETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMIS 200
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (88), Expect = 0.002
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 28/150 (18%)
Query: 359 SQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCE 418
S+ D F L+++G GKS ++ Y D + T
Sbjct: 1 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTND-YISTI-------------------G 40
Query: 419 RHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE 478
+ + + ++ I DT G +R + +T + + ++ V +
Sbjct: 41 VDFKIKTVELDGKTV--KLQIWDTAGQ----ERFRTITSSYYRGSHGIIIVYDVTDQESF 94
Query: 479 SEV--VFLRYTQQWKKKVVFVLNKSDLYQN 506
+ V + V+ +L +
Sbjct: 95 NGVKMWLQEIDRYATSTVLKLLVGNKCDLK 124
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.002
Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 39/180 (21%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
F +I+G+ GKS +++ ++ + + E GQ
Sbjct: 5 FKYIIIGDMGVGKSCLLH-----QFTEKKFMADCPHTIG--------VEFGTRIIEVSGQ 51
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-- 482
I + I DT G +R + +T + A L V R T + +
Sbjct: 52 KIK---------LQIWDTAGQ----ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 98
Query: 483 --FLRYTQQWKKKVVFVLNKSDL-YQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
R ++ + NK+DL Q EEA F +EN + SA++
Sbjct: 99 LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN--------GLLFLEASAKT 150
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (86), Expect = 0.002
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
++I+G+ GK+S++N + K++ T + + GQ
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 425 YICY 428
Sbjct: 62 ERFQ 65
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 30/175 (17%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
+VI G N+GKSS++NAL G+ T+ R + R H DG
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGRE-----AAIVTDIAGTTR-------DVLREHIHIDGM 49
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL 484
+ + + + + I + E R ++ + D
Sbjct: 50 PLHIIDTA----GLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF 105
Query: 485 RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
K + V NK+D+ + E + + +SAR+
Sbjct: 106 IARLPAKLPITVVRNKADITGETLGMSE--------------VNGHALIRLSART 146
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 37.7 bits (86), Expect = 0.003
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 10/135 (7%)
Query: 369 IVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICY 428
++G + GK+++++ + G IT + E +
Sbjct: 10 VLGHVDHGKTTLLDHIRGSA----VASREAGGIT--QHIGATEIPMDVIEGICGDFLKKF 63
Query: 429 LPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQ 488
L + +DTPG + L + ADL + ++ + L +
Sbjct: 64 SIRETLPGLFFIDTPGH----EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 489 QWKKKVVFVLNKSDL 503
++ V NK D
Sbjct: 120 MYRTPFVVAANKIDR 134
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (88), Expect = 0.003
Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 348 MEEVSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFS 407
++++ L+D V+ + + ++ + GKS++ ++L+ + G++ + + RF+
Sbjct: 4 VDQMRSLMDKVTNVRN---MSVIAHVDHGKSTLTDSLV----QRAGII-SAAKAGEARFT 55
Query: 408 DLASEEQQR-------------CERHPDGQYICYLPSPILKEMIIVDTPGTNVILQRQQR 454
D +EQ+R D + I + ++D+PG
Sbjct: 56 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 115
Query: 455 LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502
+ D L V+ + LR + K V V+NK D
Sbjct: 116 A----LRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVD 159
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.004
Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 39/180 (21%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
++I+GE GKSS++ + + + D +
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTF----------------------DPELAATIGVDFK 45
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESE---- 480
++ I DT G +R + LT + A V+ V R T +
Sbjct: 46 VKTISVDGNKAKLAIWDTAGQ----ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW 101
Query: 481 -VVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
Y + + V NK D + E + F +++ ++ SA++
Sbjct: 102 LNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH--------SMLFIEASAKT 153
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.004
Identities = 22/176 (12%), Positives = 54/176 (30%), Gaps = 31/176 (17%)
Query: 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQ 424
F +++G +GKS +++ + K++ ++ +
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKF----------------------KDDSNHTIGVEFG 43
Query: 425 YICYLPSPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VF 483
++ I DT G +R + +T + A L V T + + +
Sbjct: 44 SKIINVGGKYVKLQIWDTAGQ----ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 99
Query: 484 LRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSARS 539
L + + + ++ L N +L+ + + SA +
Sbjct: 100 LTDARMLASQNIVII----LCGNKKDLDADREVTFLEASRFAQENELMFLETSALT 151
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 921 | |||
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 100.0 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 100.0 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.76 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.74 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.72 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.71 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.7 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.69 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.67 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.67 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.66 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.64 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.64 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.63 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.63 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.63 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.6 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.6 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.56 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.54 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.53 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.52 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.5 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.49 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.48 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.47 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.47 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.47 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.47 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.46 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.46 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.46 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.45 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.44 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.42 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.42 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.41 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.41 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.41 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.4 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.38 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.38 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.37 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.37 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.35 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.34 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.32 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.32 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.31 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.28 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.28 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.26 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.26 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.24 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.24 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.21 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.19 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.19 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.15 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.13 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.1 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.9 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.84 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 98.78 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.78 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.72 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.57 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.52 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.51 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.44 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.18 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.07 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.9 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 97.65 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.65 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.63 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.4 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.34 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.16 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.09 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.06 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.04 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.88 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.59 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.11 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.1 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 95.95 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 95.79 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.64 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.26 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 95.25 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 95.16 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 95.15 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.1 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.09 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 95.02 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 94.94 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 94.92 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.86 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 94.49 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 94.32 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 94.32 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 94.29 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 93.84 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 93.79 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.79 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.63 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 93.57 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 93.35 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 93.31 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.21 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.15 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 93.13 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 93.1 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 93.08 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 93.04 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 93.04 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 92.94 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 92.93 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.91 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 92.87 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 92.8 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.77 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 92.73 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 92.69 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 92.68 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.68 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.56 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.43 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 92.39 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 92.36 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 92.35 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 92.35 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 92.1 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 92.05 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 91.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 91.96 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 91.92 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 91.77 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.77 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 91.69 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 91.48 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 91.46 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 91.46 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.35 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 91.33 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 91.26 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.16 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 91.13 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 91.09 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.01 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.85 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.81 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 90.63 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 90.6 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.58 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 90.39 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 90.32 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.23 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.23 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.12 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.1 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 89.86 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.79 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.76 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.72 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.51 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 89.26 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 89.23 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.14 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.98 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 88.93 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.77 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.48 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 88.4 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.02 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 87.99 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.44 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.4 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 87.23 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 87.22 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.11 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 87.01 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.13 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.98 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 85.86 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 85.77 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.71 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 85.61 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 85.54 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 85.53 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 85.31 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.31 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 84.94 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 84.66 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 84.43 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.41 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.19 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.13 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.98 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 83.9 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 83.52 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.27 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 83.01 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 82.95 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 82.44 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 82.4 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 82.19 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 81.77 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.67 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 81.63 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 81.62 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 81.54 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 80.65 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 80.54 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 80.32 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.07 |
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=100.00 E-value=3.1e-33 Score=285.92 Aligned_cols=173 Identities=24% Similarity=0.397 Sum_probs=153.2
Q ss_pred ceEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeEEc
Q 002437 86 VVLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGVLL 164 (921)
Q Consensus 86 ~~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~GvHL 164 (921)
++||+|||+... ++++.+++++++|+++||||.|+.+..++++++..++++|+. +++|+|||++++|..+++|||||
T Consensus 6 l~ly~ITd~~~~--~~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind~~~lA~~~~adGvHl 83 (206)
T d1xi3a_ 6 LKLYVITDRRLK--PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQL 83 (206)
T ss_dssp TSEEEECCTTTS--CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEE
T ss_pred CeEEEEeCCccc--CHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEechhHHHHHhccCceEee
Confidence 379999998653 568999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCC-----Ccc-hhhhhhcCCC
Q 002437 165 SDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKA-----DVI-ENSLFTNVKI 236 (921)
Q Consensus 165 ~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~-----g~~-~~~~~~~~~~ 236 (921)
++.+++....|.. + ++ + ++|.|||+.+++..| ...|+||+++||| |.+++ |+. .+++++..++
T Consensus 84 ~~~~~~~~~~~~~-~---~~-~---iig~s~h~~~e~~~a-~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~ 154 (206)
T d1xi3a_ 84 GPEDMPIEVAKEI-A---PN-L---IIGASVYSLEEALEA-EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKI 154 (206)
T ss_dssp CTTSCCHHHHHHH-C---TT-S---EEEEEESSHHHHHHH-HHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSS
T ss_pred ccccccHhhhhhc-c---cc-c---ccccccCCHHHHHHH-HhcCCCEEEeccccccccccccccccHHHHHHHHHhcCC
Confidence 9999998665554 4 55 3 799999999999999 8999999999999 43332 333 4788889999
Q ss_pred CEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 237 PIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 237 Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
||||||||+++|+.+++++||+|||++++.+..
T Consensus 155 Pv~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~~ 187 (206)
T d1xi3a_ 155 PVVAIGGINKDNAREVLKTGVDGIAVISAVMGA 187 (206)
T ss_dssp CEEEESSCCTTTHHHHHTTTCSEEEESHHHHTS
T ss_pred CEEEECCCCHHHHHHHHHhCCCEEEEhHHHHCC
Confidence 999999999999999999999999998888764
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=7.9e-33 Score=286.02 Aligned_cols=175 Identities=15% Similarity=0.224 Sum_probs=156.0
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCC---CCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHHhCCCCeE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGE---ASGKSVYEAACLLKSVVKD-RALFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~---~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~~~~a~Gv 162 (921)
++|+||++..+..++++.+++++++|+++||||+|+ .+.++++++|+++.++|+. +++|||||++++|.+++||||
T Consensus 18 ~ly~i~~~~~~~~~~~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~liInd~~~lA~~~~adGv 97 (226)
T d2tpsa_ 18 SVYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGI 97 (226)
T ss_dssp TEEEEECGGGCSSCHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTCSEE
T ss_pred CEEEEECccccccCHHHHHHHHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCeEEEcCCHHHHhhccCCEE
Confidence 799999998888888999999999999999999997 4678899999999999999 999999999999999999999
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCCCC------cc-hhhhh-h
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQKAD------VI-ENSLF-T 232 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~~g------~~-~~~~~-~ 232 (921)
||++.|++...+|+.++ + + ++|.||||.+++..| .+.|+||+++||| |.++++ .. ...+. .
T Consensus 98 Hl~~~d~~~~~~r~~~~----~-~---iig~S~h~~~e~~~a-~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~ 168 (226)
T d2tpsa_ 98 HIGQEDANAKEVRAAIG----D-M---ILGVSAHTMSEVKQA-EEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ 168 (226)
T ss_dssp EECTTSSCHHHHHHHHT----T-S---EEEEEECSHHHHHHH-HHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT
T ss_pred Eeccccchhhhhhhccc----c-e---eeeeeccchHHHHHH-HhCcCCeEEEecccccccccccccccccchhHHHHHh
Confidence 99999999999999884 3 2 799999999999999 8999999999999 433322 22 24454 4
Q ss_pred cCCCCEEEEcCCCccChHHHHHcCCcEEEEeecccccc
Q 002437 233 NVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 233 ~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
..++||||||||+++|+.++.++|++|||++++.+...
T Consensus 169 ~~~~Pv~AiGGI~~~ni~~l~~~Ga~giAvis~I~~a~ 206 (226)
T d2tpsa_ 169 GISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAE 206 (226)
T ss_dssp TCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSS
T ss_pred cCCCCEEEecCCCHHHHHHHHHhCCCEEEEhHHhhcCC
Confidence 57999999999999999999999999999998887754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=1.1e-18 Score=173.88 Aligned_cols=159 Identities=21% Similarity=0.357 Sum_probs=112.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
.|+++|.+|+|||||+|+|+|.++.......||..+..+.+ .++.++||||+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~----------------------------~~~~ivDtpG~ 53 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW----------------------------KNHKIIDMPGF 53 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE----------------------------TTEEEEECCCB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccc----------------------------ccceecccCCc
Confidence 58999999999999999999998764444457765544332 24789999997
Q ss_pred Chh-----------hhHHHHHHHHhcCCCCEEEEEEeCCC-----------CCCHHHHHHHHHhhhcCCeEEEEEeCCCC
Q 002437 446 NVI-----------LQRQQRLTEEFVPRADLVLFVISADR-----------PLTESEVVFLRYTQQWKKKVVFVLNKSDL 503 (921)
Q Consensus 446 ~~~-----------~~~~~~~~~~~l~~aD~il~V~da~~-----------~~t~~e~~~l~~l~~~~~~vivVlNK~D~ 503 (921)
+.. .......+...++.+|++++|+|+.. .....+.+++..+...+.|+++|+||+|+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~ 133 (184)
T d2cxxa1 54 GFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK 133 (184)
T ss_dssp SCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred eeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeeh
Confidence 422 11122334455688999999999863 34556677788888889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 504 YQNAFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 504 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..+.++ ....+.+.+...+......++++||+++ .|+++|.+.|.+.+.
T Consensus 134 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vSA~~g---------------------------~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 134 IKNVQE---VINFLAEKFEVPLSEIDKVFIPISAKFG---------------------------DNIERLKNRIFEVIR 182 (184)
T ss_dssp CSCHHH---HHHHHHHHHTCCGGGHHHHEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred hhhHHH---HHHHHHHHhcccccccCCeEEEEECCCC---------------------------CCHHHHHHHHHHHcc
Confidence 866432 3333333333222223356899999887 689999999988765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=6.3e-18 Score=167.73 Aligned_cols=159 Identities=24% Similarity=0.268 Sum_probs=114.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCC-ccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVP-TTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~-tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..|+|+|.+|+|||||+|+|+|.+....+..+ +|........... + ..+.++|||
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-------------~-----------~~~~~~Dtp 61 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG-------------R-----------RQIVFVDTP 61 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-------------T-----------EEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee-------------e-----------eeeeecccc
Confidence 47999999999999999999999876655444 4433332221111 1 248999999
Q ss_pred CCChhh----hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 444 GTNVIL----QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 444 G~~~~~----~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
|+.... ......+..++..||++|||+|++++.+..+..++..++. .+.|+++|+||+|+....++ ..+.
T Consensus 62 G~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~~---~~~~- 137 (178)
T d1wf3a1 62 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE---AMKA- 137 (178)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH---HHHH-
T ss_pred cccccccccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHHH---HHHH-
Confidence 985432 2234456677899999999999999998888777777765 35799999999999865322 2222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+...++ ...++++||+.+ .|+++|.+.|.+.+.+
T Consensus 138 ---~~~~~~--~~~~~~iSA~~~---------------------------~gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 138 ---YHELLP--EAEPRMLSALDE---------------------------RQVAELKADLLALMPE 171 (178)
T ss_dssp ---HHHTST--TSEEEECCTTCH---------------------------HHHHHHHHHHHTTCCB
T ss_pred ---HHhhcc--cCceEEEecCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 222232 467899999987 6889999999888754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.74 E-value=1e-17 Score=166.47 Aligned_cols=170 Identities=21% Similarity=0.245 Sum_probs=116.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..+|+++|++|+|||||+|+|++........ .+++.. + ......+.....++ -..+.++||
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~----~-----------g~~~~~~~~~~~~~---~~~~~~~d~ 66 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQK----R-----------GITIDIGFSAFKLE---NYRITLVDA 66 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC-----------------------------------CCCEEEET---TEEEEECCC
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceee----e-----------eeeccccccccccC---Ccccccccc
Confidence 4689999999999999999999864321111 111110 0 00000000001111 024889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTM 522 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~ 522 (921)
||. ..+...+...+..+|++++|+|+..+...+..+.+..+...+.|+++|+||+|+... ++.+......+..+.
T Consensus 67 ~g~----~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~-~~~~~~~~~~~~~~~ 141 (179)
T d1wb1a4 67 PGH----ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT-EEIKRTEMIMKSILQ 141 (179)
T ss_dssp SSH----HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH-HHHHHHHHHHHHHHH
T ss_pred ccc----cccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCH-HHHHHHHHHHHHHHH
Confidence 996 344556777889999999999999998888888888888999999999999999854 444444444444444
Q ss_pred HhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 523 KLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 523 ~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
...+....+++|+||++| .|+++|.+.|.+.+.+
T Consensus 142 ~~~~~~~~~iv~iSA~~g---------------------------~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 142 STHNLKNSSIIPISAKTG---------------------------FGVDELKNLIITTLNN 175 (179)
T ss_dssp HSSSGGGCCEEECCTTTC---------------------------TTHHHHHHHHHHHHHH
T ss_pred HhhcCCCCeEEEEEccCC---------------------------cCHHHHHHHHHhcCCc
Confidence 444555689999999998 7999999999887763
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=8.1e-17 Score=179.70 Aligned_cols=168 Identities=22% Similarity=0.218 Sum_probs=118.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC-----CCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCccccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR-----YLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEM 437 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~-----~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l 437 (921)
.+++|+|+|.+|+|||||||+|+|.. ..+++..+||..++.+.+... .++
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~-------------------------~~~ 109 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI-------------------------PNV 109 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC-------------------------TTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC-------------------------CeE
Confidence 57899999999999999999999954 345566677777666544321 258
Q ss_pred EEEeCCCCChhhhHHHH-HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC----------
Q 002437 438 IIVDTPGTNVILQRQQR-LTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN---------- 506 (921)
Q Consensus 438 ~lvDTPG~~~~~~~~~~-~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~---------- 506 (921)
+||||||++........ .....+..+|++|++.|. .++..+.++++.+.+.++|+++|+||+|....
T Consensus 110 ~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~ 187 (400)
T d1tq4a_ 110 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTF 187 (400)
T ss_dssp EEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESS--CCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTC
T ss_pred EEEeCCCcccccccHHHHHHHhhhhcceEEEEecCC--CCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccc
Confidence 99999999755333222 333345789999998875 48899999999999999999999999996411
Q ss_pred --hHHHHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 507 --AFELEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 507 --~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
+..++++++.+...+... +...++||.+|+... . ..||+.|.+.+.+.+.+
T Consensus 188 ~~e~~l~~ir~~~~~~l~~~-~~~~~~vflvS~~~~----------------------~---~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 188 DKEKVLQDIRLNCVNTFREN-GIAEPPIFLLSNKNV----------------------C---HYDFPVLMDKLISDLPI 240 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TCSSCCEEECCTTCT----------------------T---STTHHHHHHHHHHHSCG
T ss_pred cHHHHHHHHHHHHHHHHHHc-CCCCCCEEEecCCcc----------------------c---ccCHHHHHHHHHHHhHH
Confidence 112344444444444433 456789999998542 1 24899999999988874
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=1.7e-17 Score=165.65 Aligned_cols=169 Identities=22% Similarity=0.271 Sum_probs=117.9
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCc-cceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~t-T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
.+.+.++|+|+|.+|+|||||+|+|+|.+..+.+..+. |.......+.. ++ ..+.
T Consensus 4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~-------------~~-----------~~~~ 59 (186)
T d1mkya2 4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-------------DG-----------RKYV 59 (186)
T ss_dssp CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-------------TT-----------EEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeecc-------------CC-----------ceee
Confidence 34567999999999999999999999988765444443 32222111111 11 2478
Q ss_pred EEeCCCCChhh--------hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHH-
Q 002437 439 IVDTPGTNVIL--------QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFE- 509 (921)
Q Consensus 439 lvDTPG~~~~~--------~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~- 509 (921)
++||||+.... ......+...+..+|++++|+|++.+.......++..+...+.|+|+|+||+|+....+.
T Consensus 60 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~ 139 (186)
T d1mkya2 60 FVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKR 139 (186)
T ss_dssp ESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGC
T ss_pred eeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhh
Confidence 99999984211 111234566678899999999999999999999999999999999999999999866432
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 510 LEEAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 510 ~~~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
..++.+.+.+.+. .....+++++||+++ .|+++|.+.|.+.+.
T Consensus 140 ~~~~~~~~~~~~~---~~~~~~i~~vSa~~g---------------------------~gv~~L~~~i~~~~~ 182 (186)
T d1mkya2 140 YDEFTKLFREKLY---FIDYSPLIFTSADKG---------------------------WNIDRMIDAMNLAYA 182 (186)
T ss_dssp HHHHHHHHHHHCG---GGTTSCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhc---ccCCCeEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 3444444443322 224578999999987 688888888877654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=1.6e-16 Score=159.88 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=111.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC-CCCCC-CccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL-KDGVV-PTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~-~~~~~-~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
..++|+++|.+|+|||||+|+|+|.+.. ..+.. .+|......... ..+.++
T Consensus 22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~---------------------------~~~~~~ 74 (195)
T d1svia_ 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---------------------------DELHFV 74 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---------------------------TTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc---------------------------ccceEE
Confidence 3468999999999999999999997632 22222 233332222111 146788
Q ss_pred eCCCCChh------hhHHH---HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 441 DTPGTNVI------LQRQQ---RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 441 DTPG~~~~------~~~~~---~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
|+||.+.. ..... ....+.+..+|++++|+|++++.+..+.++++.++..+.|+++|+||+|+... .+..
T Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~-~~~~ 153 (195)
T d1svia_ 75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK-GKWD 153 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG-GGHH
T ss_pred EEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCH-HHHH
Confidence 99887422 11122 22334557889999999999999999999999999999999999999999744 4455
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+..+.+++.+. .....+++++||+++ .|+++|.+.|.+.+.
T Consensus 154 ~~~~~~~~~l~---~~~~~~~~~~SA~~~---------------------------~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 154 KHAKVVRQTLN---IDPEDELILFSSETK---------------------------KGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHHT---CCTTSEEEECCTTTC---------------------------TTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---ccCCCCEEEEeCCCC---------------------------CCHHHHHHHHHHHhC
Confidence 55444444332 225678999999887 699999999988764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2e-17 Score=178.31 Aligned_cols=147 Identities=21% Similarity=0.307 Sum_probs=111.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhc--------------------------
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQR-------------------------- 416 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~-------------------------- 416 (921)
..|.|+|+|.+|+|||||||+|+|.+++|++..|||+.++.+.++.........
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999999999999999999999887543211000
Q ss_pred --ccccCCCeEEeecCCCcccccEEEeCCCCChhh---------hHHHHHHHHhcCCCC-EEEEEEeCCCCCCHHH-HHH
Q 002437 417 --CERHPDGQYICYLPSPILKEMIIVDTPGTNVIL---------QRQQRLTEEFVPRAD-LVLFVISADRPLTESE-VVF 483 (921)
Q Consensus 417 --~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~---------~~~~~~~~~~l~~aD-~il~V~da~~~~t~~e-~~~ 483 (921)
.....+..+....++|.+.+++||||||+++.. .....++..|+..++ ++++|.++..+.+.++ ..+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 001112235556778888899999999996431 223567888887776 5677888887776665 467
Q ss_pred HHHhhhcCCeEEEEEeCCCCCCChHH
Q 002437 484 LRYTQQWKKKVVFVLNKSDLYQNAFE 509 (921)
Q Consensus 484 l~~l~~~~~~vivVlNK~D~~~~~~~ 509 (921)
++.+...+.++++|+||+|...+.++
T Consensus 185 ~~~~~~~~~r~i~Vltk~D~~~~~~~ 210 (299)
T d2akab1 185 AKEVDPQGQRTIGVITKLDLMDEGTD 210 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCC
T ss_pred HHHhCcCCCceeeEEeccccccchhh
Confidence 78888888999999999999876433
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=1.1e-16 Score=157.47 Aligned_cols=158 Identities=25% Similarity=0.281 Sum_probs=107.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
+|+|+|.+|+|||||+|+|+|.+....+. .++|.......+.... ..+.++||||
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------~~~~~~d~~g 57 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG------------------------KTFKLVDTCG 57 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT------------------------EEEEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc------------------------cccccccccc
Confidence 68999999999999999999987654333 3344332222111110 1478999999
Q ss_pred CChh-----hhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVI-----LQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~-----~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
+... ...+...+..++..+|+++++++++.+....+..++..++..++|+++|+||+|+... . ...+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~-~-----~~~~~~ 131 (171)
T d1mkya1 58 VFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE-F-----EREVKP 131 (171)
T ss_dssp TTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH-H-----HHHTHH
T ss_pred eeeeeccccccccccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhh-h-----hhHHHH
Confidence 7422 2334566777889999999999999999998888888888889999999999998632 1 112222
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.+. ...+++++||+++ .|+++|.+.|.+.+.+
T Consensus 132 ~~~~~---~~~~~i~iSAk~g---------------------------~gid~L~~~i~~~l~e 165 (171)
T d1mkya1 132 ELYSL---GFGEPIPVSAEHN---------------------------INLDTMLETIIKKLEE 165 (171)
T ss_dssp HHGGG---SSCSCEECBTTTT---------------------------BSHHHHHHHHHHHHHH
T ss_pred HHHhc---CCCCeEEEecCCC---------------------------CCHHHHHHHHHHhCCC
Confidence 22222 2346789999987 7999999999887764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=1.6e-16 Score=157.65 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=106.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
.|+++|.+|+|||||+|+|+|.+....+..++|...+........ + ..+.++||||+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~------------~-----------~~~~~~DtpG~ 59 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE------------E-----------ERFTLADIPGI 59 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS------------S-----------CEEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecC------------C-----------CeEEEcCCCee
Confidence 499999999999999999999876655555555544432221110 1 24889999998
Q ss_pred ChhhhH---HHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHh-----hhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 446 NVILQR---QQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT-----QQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 446 ~~~~~~---~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l-----~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
...... ....+...+..+|++++++|+..............+ ...++|+++|+||+|+... +..++..+.+
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~~~ 138 (180)
T d1udxa2 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADAL 138 (180)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHH
T ss_pred ecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH-HHHHHHHHHH
Confidence 543221 123455677999999999998754333222222222 2245799999999999853 3333332222
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.....++|++||+++ .|+++|.+.|.+.+..
T Consensus 139 --------~~~~~~~~~iSA~tg---------------------------~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 139 --------AREGLAVLPVSALTG---------------------------AGLPALKEALHALVRS 169 (180)
T ss_dssp --------HTTTSCEEECCTTTC---------------------------TTHHHHHHHHHHHHHT
T ss_pred --------HhcCCeEEEEEcCCC---------------------------CCHHHHHHHHHHHHhh
Confidence 224678999999987 7999999999988764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.67 E-value=1.2e-16 Score=172.78 Aligned_cols=147 Identities=20% Similarity=0.335 Sum_probs=99.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhh---------------------------
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQ--------------------------- 415 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~--------------------------- 415 (921)
..|.|+|+|.+++|||||||+|+|.+++|++..|||..++.++++........
T Consensus 23 ~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (306)
T d1jwyb_ 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (306)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHH
Confidence 35799999999999999999999999999999999999999988743321100
Q ss_pred ---------cccccCCCeEEeecCCCcccccEEEeCCCCChhhh---------HHHHHHHHhcCCCCE-EEEEEeCCCCC
Q 002437 416 ---------RCERHPDGQYICYLPSPILKEMIIVDTPGTNVILQ---------RQQRLTEEFVPRADL-VLFVISADRPL 476 (921)
Q Consensus 416 ---------~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~~~~~~---------~~~~~~~~~l~~aD~-il~V~da~~~~ 476 (921)
.........+....+.+.+.+++||||||+++... ....++..|+..+|. +++|+++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~ 182 (306)
T d1jwyb_ 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (306)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence 00001112234556677788999999999975422 245788899999996 45555666544
Q ss_pred -CHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHH
Q 002437 477 -TESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFE 509 (921)
Q Consensus 477 -t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~ 509 (921)
+.....+++.+...+.++++|+||+|.....++
T Consensus 183 ~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~~~ 216 (306)
T d1jwyb_ 183 ANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD 216 (306)
T ss_dssp TTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC
T ss_pred cccHHHHHHHHhCcCCCeEEEEEeccccccchhH
Confidence 444567788888888899999999999876544
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.66 E-value=5.1e-16 Score=155.56 Aligned_cols=168 Identities=19% Similarity=0.106 Sum_probs=106.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
++.+|+++|+.++|||||+|+|++.-....+... ..... .+....+..+..........+.+. .+.+.++||
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~--~~~~~---~~~~~~Er~rgiTi~~~~~~~~~~---~~~~~~iDt 73 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKF--KKYEE---IDNAPEERARGITINAAHVEYSTA---ARHYAHTDC 73 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCC--CCHHH---HHSCCEEEETTEEEECEEEEEECS---SCEEEEEEC
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchh--hhhhh---cccchhhcCCCccCCcceEEEEec---eeeEEeecC
Confidence 3478999999999999999999852100000000 00000 000000011111111111111111 135899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
||. ..+...+...+..+|++|+|+|+..+...+..+.+..+...+ +|+|+++||+|+..+.+..+.+...+++.+
T Consensus 74 PGh----~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l 149 (196)
T d1d2ea3 74 PGH----ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (196)
T ss_dssp SSH----HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred cch----HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHH
Confidence 996 334445667789999999999999999999999888887755 579999999999876555666666777666
Q ss_pred HHhh-CCCCCeEEEecccchHH
Q 002437 522 MKLL-NIENVTIYPVSARSTLE 542 (921)
Q Consensus 522 ~~~~-~~~~~~v~~vSA~~~l~ 542 (921)
..+- .....+++++||+.|+.
T Consensus 150 ~~~~~~~~~~pii~iSa~~g~~ 171 (196)
T d1d2ea3 150 TEFGYKGEETPIIVGSALCALE 171 (196)
T ss_dssp HHTTSCTTTSCEEECCHHHHHT
T ss_pred HHhCCCcccCEEEEEEcccccc
Confidence 5431 22468899999999854
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.64 E-value=1.4e-16 Score=164.26 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=83.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCcc--ch--hhcccccCCCeEEeecCCCcccccEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLAS--EE--QQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~--~~--~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
.|.|+|+|++|+|||||+|+|++..........+|............. .. .........+ ...+.+
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 74 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRET----------LPGLFF 74 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGT----------CCEEEE
T ss_pred CCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeeccc----------cccccc
Confidence 466999999999999999999986543222222222211111110000 00 0000000000 024899
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+||||..... ..+...+..+|++|+|+|+..+.+......+..+...+.|+|+|+||+|+...
T Consensus 75 iDtPGh~~f~----~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 75 IDTPGHEAFT----TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHG 137 (227)
T ss_dssp ECCCTTSCCT----TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTT
T ss_pred ccccceeccc----ccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCc
Confidence 9999974332 22344568899999999999999999999999999999999999999998754
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.3e-16 Score=153.27 Aligned_cols=151 Identities=23% Similarity=0.251 Sum_probs=104.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|+|.+....+..|.|. ......+.. .+ ..+.++|||
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~~~d~~ 57 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-------------DG-----------MPLHIIDTA 57 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-------------TT-----------EEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeec-------------cC-----------ceeeecccc
Confidence 78999999999999999999998876555444332 222111111 01 248899999
Q ss_pred CCChhhh----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHh-h--hcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 444 GTNVILQ----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYT-Q--QWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 444 G~~~~~~----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l-~--~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
|+..... .....+..++..+|+++|++|+..+.+..+.+.+..+ . ..+.|+++|+||+|+......
T Consensus 58 g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~------- 130 (161)
T d2gj8a1 58 GLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------- 130 (161)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------
T ss_pred ccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH-------
Confidence 9854422 2233456667899999999999987765555543332 2 236899999999998654211
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
+......+++++||+.+ .|+++|.++|.+.
T Consensus 131 -------~~~~~~~~~~~iSAk~~---------------------------~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 131 -------MSEVNGHALIRLSARTG---------------------------EGVDVLRNHLKQS 160 (161)
T ss_dssp -------EEEETTEEEEECCTTTC---------------------------TTHHHHHHHHHHH
T ss_pred -------HHHhCCCcEEEEECCCC---------------------------CCHHHHHHHHHhh
Confidence 11224578999999987 6899999888765
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.63 E-value=2.7e-15 Score=152.04 Aligned_cols=188 Identities=19% Similarity=0.178 Sum_probs=112.6
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCc---c--ceeEEEEccCCccchhhccc-ccCCCe-EEeecCCCcc
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPT---T--NEITFLRFSDLASEEQQRCE-RHPDGQ-YICYLPSPIL 434 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~t---T--~~~~~~~~~~~~~~~~~~~~-~~~~g~-~~~~~p~~~l 434 (921)
.++.+|+|+|+.++|||||+|+|++........... + .................... ....+. ..........
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 455799999999999999999999853221111000 0 00000000000000000000 000000 0000001112
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHH
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~ 512 (921)
+.+.++||||. ..+...+...+..+|++|+|+|+..++ ..+..+.+..+...+ +|+|+++||+|+... ++...
T Consensus 86 r~~~iiD~PGH----~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~-~~~~~ 160 (205)
T d2qn6a3 86 RRISFIDAPGH----EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK-EEALS 160 (205)
T ss_dssp EEEEEEECSCH----HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCH-HHHHH
T ss_pred EEEEEeccchH----HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccc-hHHHH
Confidence 35899999996 344455667778999999999999986 556667777777766 488999999999854 34344
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
....+...+... .....+++|+||+.+ .|+++|.+.+.+++.
T Consensus 161 ~~~~~~~~l~~~-~~~~~p~ipiSA~~g---------------------------~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 161 QYRQIKQFTKGT-WAENVPIIPVSALHK---------------------------INIDSLIEGIEEYIK 202 (205)
T ss_dssp HHHHHHHHHTTS-TTTTCCEEECBTTTT---------------------------BSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccc-cCCCCeEEEEeCCCC---------------------------CChHHHHHHHHhhCC
Confidence 444444444433 345689999999987 688899888887764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=1.8e-15 Score=152.77 Aligned_cols=172 Identities=18% Similarity=0.117 Sum_probs=112.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
++.+|+++|+.++|||||+++|+...-...... .+..... .+...++.++..........+.+.. +.++|+||
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~-~~~~~~~---~d~~~eE~~rgiTi~~~~~~~~~~~---~~i~iiDt 74 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNV-EVKDYGD---IDKAPEERARGITINTAHVEYETAK---RHYSHVDC 74 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS-CCCCHHH---HSCSHHHHHHTCCCSCEEEEEECSS---CEEEEEEC
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCc-chhhhhh---cccchHHhcCCeEEEeeEEEEEeCC---eEEEEEeC
Confidence 357899999999999999999974210000000 0000000 0111122233333222222222222 35899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCe-EEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKK-VVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~-vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
||..++. ..+...+..+|++|+|+|+..+...+..+.+..+...+.| +++++||||+..+++..+++.+.+++.+
T Consensus 75 PGh~df~----~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l 150 (204)
T d2c78a3 75 PGHADYI----KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 150 (204)
T ss_dssp CCSGGGH----HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCchhhH----HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 9985443 3456777999999999999999999999999999888865 7888999999876555677777777666
Q ss_pred HHh-hCCCCCeEEEecccchHHhhc
Q 002437 522 MKL-LNIENVTIYPVSARSTLEAKL 545 (921)
Q Consensus 522 ~~~-~~~~~~~v~~vSA~~~l~a~~ 545 (921)
... +.....+++++|+..+.....
T Consensus 151 ~~~~~~~~~i~~i~~sa~~~~~~~~ 175 (204)
T d2c78a3 151 NQYEFPGDEVPVIRGSALLALEQMH 175 (204)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHH
T ss_pred HhcCCCcccceeeeeechhhhhhhh
Confidence 543 122457899999988765543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=2e-16 Score=153.51 Aligned_cols=152 Identities=30% Similarity=0.379 Sum_probs=105.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+++|.+|+|||||+|+|+|.+....+..|.+. ......+.. .+ ..+.++|||
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~-----------~~~~~~Dt~ 56 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-------------RG-----------ILFRIVDTA 56 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-------------TT-----------EEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEe-------------CC-----------eeEEecccc
Confidence 47999999999999999999998876555544332 222111111 11 147899999
Q ss_pred CCChhhh-----HHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQ-----RQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~-----~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|+..... .....+...+..+|+++||+|++++....+..+...+ ...++++++||+|..... +.+++..
T Consensus 57 G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~-~~~~~~~--- 130 (160)
T d1xzpa2 57 GVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI-NEEEIKN--- 130 (160)
T ss_dssp CCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH---
T ss_pred ccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchh-hhHHHHH---
Confidence 9743211 1123456667889999999999999988887766654 457899999999998653 2222222
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
.++ ...+++++||+++ .|+++|.+.|.+
T Consensus 131 -----~~~-~~~~~~~vSA~~g---------------------------~gi~~L~~~I~k 158 (160)
T d1xzpa2 131 -----KLG-TDRHMVKISALKG---------------------------EGLEKLEESIYR 158 (160)
T ss_dssp -----HHT-CSTTEEEEEGGGT---------------------------CCHHHHHHHHHH
T ss_pred -----HhC-CCCcEEEEECCCC---------------------------CCHHHHHHHHHh
Confidence 122 2468999999987 689998887753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.60 E-value=1.4e-16 Score=158.88 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=104.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
..|+++|.+|+|||||+|+|+|.+....+..++|...+...... .++ +.+.++||||
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~------------~~~-----------~~~~~~DtpG 58 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET------------DDG-----------RSFVMADLPG 58 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC------------SSS-----------CEEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEe------------cCC-----------cEEEEecCCC
Confidence 35999999999999999999998877667777776544332211 111 2489999999
Q ss_pred CChhh---hHHHHHHHHhcCCCCEEEEEEeCCCCC--CHHHHHH-HH---Hh---hhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 445 TNVIL---QRQQRLTEEFVPRADLVLFVISADRPL--TESEVVF-LR---YT---QQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 445 ~~~~~---~~~~~~~~~~l~~aD~il~V~da~~~~--t~~e~~~-l~---~l---~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+.... ......+...+..++.++++++..... ...+... .. .. ...++|+++|+||+|+....+..+
T Consensus 59 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~- 137 (185)
T d1lnza2 59 LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLE- 137 (185)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHH-
T ss_pred cccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHH-
Confidence 73211 111233445567899999999876432 2222211 11 11 123579999999999985432222
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+.+ .+. ...++|++||+++ .|+++|.+.+.+.+.+
T Consensus 138 ---~~~~----~~~-~~~~v~~iSA~~g---------------------------~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 138 ---AFKE----KLT-DDYPVFPISAVTR---------------------------EGLRELLFEVANQLEN 173 (185)
T ss_dssp ---HHHH----HCC-SCCCBCCCSSCCS---------------------------STTHHHHHHHHHHHTS
T ss_pred ---HHHH----Hhc-cCCcEEEEECCCC---------------------------CCHHHHHHHHHHhhhh
Confidence 2222 222 3578999999987 7999999999988864
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.60 E-value=4.7e-15 Score=148.96 Aligned_cols=181 Identities=22% Similarity=0.210 Sum_probs=109.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC--CCCC-CCccceeEEEEccCCccchhhccc----ccCCCeEEeecCCCccc
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL--KDGV-VPTTNEITFLRFSDLASEEQQRCE----RHPDGQYICYLPSPILK 435 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~~~-~~tT~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~p~~~l~ 435 (921)
...+|+++|+.++|||||+|+|+|.... +... ...|.......+.........+.. ....+.. .....
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 78 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHE-----TEFVR 78 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCB-----CEEEE
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeee-----ecCce
Confidence 3457899999999999999999985321 1111 112222211111100000000000 0000000 00012
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-CHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-TESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~~~~~v 513 (921)
.++++||||. ..+...+...+..+|++++|+|+..+. .....+.+..+...+ +++++++||+|+... ....+.
T Consensus 79 ~~~~iDtPGh----~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~-~~~~~~ 153 (195)
T d1kk1a3 79 RVSFIDAPGH----EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK-EKALEN 153 (195)
T ss_dssp EEEEEECSSH----HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHH
T ss_pred eEeeeccchh----hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhh-HHHHHH
Confidence 4899999995 344455666678999999999999875 444556666666655 458889999999843 444444
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
...+.+.+... ....++++|+||+.| .|+++|.+.+.+++
T Consensus 154 ~~~~~~~~~~~-~~~~~~iIpiSA~~G---------------------------~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 154 YRQIKEFIEGT-VAENAPIIPISALHG---------------------------ANIDVLVKAIEDFI 193 (195)
T ss_dssp HHHHHHHHTTS-TTTTCCEEECBTTTT---------------------------BSHHHHHHHHHHHS
T ss_pred HHHHHHHhccc-cCCCCeEEEEECCCC---------------------------CCHHHHHHHHHHHC
Confidence 44444444432 335689999999998 68999988888765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.56 E-value=1.4e-14 Score=141.13 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=103.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.|.+..+. ...||. .+....... .+ ..+.++|||
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~--~~~~t~-~~~~~~~~~-------------~~-----------~~~~~~D~~ 54 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVD--TISPTL-GFNIKTLEH-------------RG-----------FKLNIWDVG 54 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCS--SCCCCS-SEEEEEEEE-------------TT-----------EEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCC--cccceE-eeeeeeccc-------------cc-----------cceeeeecC
Confidence 478999999999999999999987653 233333 222222111 11 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHH-HHh---hhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFL-RYT---QQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l-~~l---~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|. +........++..+|++++|+|..+..+..+. ..+ ..+ ...+.|+++|.||+|+.... ..++....+.
T Consensus 55 G~----~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~ 129 (165)
T d1ksha_ 55 GQ----KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-SCNAIQEALE 129 (165)
T ss_dssp CS----HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTT
T ss_pred cc----hhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc-CHHHHHHHHH
Confidence 96 34445677888999999999998876554443 223 232 23568999999999986431 1222222111
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
...+.....+++++||+++ .|+.++.++|.+.+.
T Consensus 130 ---~~~~~~~~~~~~~~Sa~~g---------------------------~gv~e~~~~l~~~i~ 163 (165)
T d1ksha_ 130 ---LDSIRSHHWRIQGCSAVTG---------------------------EDLLPGIDWLLDDIS 163 (165)
T ss_dssp ---GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred ---hhhhhcCCCEEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1222334568999999997 688888888776654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.2e-14 Score=142.25 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=101.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.|.+.++.+......+.......... .+.. ..+.+||||
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~l~~wDt~ 62 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-------------NDKR---------IKLQIWDTA 62 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEEEC
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEe-------------ecce---------EEEEEEECC
Confidence 479999999999999999999987654432222221222111110 0110 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh---hhcCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT---QQWKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l---~~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|. +++..+...+++.+|++|+|+|.+++.+..... ++..+ .....|+++|.||+|+..... ..++.....+
T Consensus 63 G~----e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~ 138 (169)
T d3raba_ 63 GQ----ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD 138 (169)
T ss_dssp CS----GGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred Cc----hhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHH
Confidence 96 345567788999999999999998765444432 23323 234578999999999754311 1122222221
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ..+++.+||+++ .|++++.+.+.+.+.
T Consensus 139 -----~~---~~~~~e~Sak~g---------------------------~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 139 -----HL---GFEFFEASAKDN---------------------------INVKQTFERLVDVIC 167 (169)
T ss_dssp -----HH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----Hc---CCEEEEecCCCC---------------------------cCHHHHHHHHHHHHh
Confidence 12 368999999987 688888777776654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.53 E-value=1.7e-14 Score=142.04 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=103.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+..++|+++|.+|+|||||+|.|.+.++.... +++. ++...... .+ ..+.++|
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~--~~~~-~~~~~i~~-------------~~-----------~~~~i~d 66 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT--PTQG-FNIKSVQS-------------QG-----------FKLNVWD 66 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE--EETT-EEEEEEEE-------------TT-----------EEEEEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCCcce--eeee-eeEEEecc-------------CC-----------eeEeEee
Confidence 35689999999999999999999987653211 1111 11111000 01 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~~~ 516 (921)
+||.. .+...+..++..+|++++|+|.++..+..+.. ++..+ ...+.|+++|.||+|+.... ....+.+.
T Consensus 67 ~~g~~----~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~-~~~~~~~~ 141 (176)
T d1fzqa_ 67 IGGQR----KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEG 141 (176)
T ss_dssp CSSCG----GGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHH
T ss_pred ccccc----cchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc-cHHHHHHH
Confidence 99973 44566788899999999999999876665543 33332 23467999999999998542 22222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
+. .........+++++||+++ .|++++.++|.+.
T Consensus 142 ~~---~~~~~~~~~~~~~~SA~tg---------------------------~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 142 LN---LHTIRDRVWQIQSCSALTG---------------------------EGVQDGMNWVCKN 175 (176)
T ss_dssp TT---GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHT
T ss_pred HH---HHHHHhcCCEEEEEeCCCC---------------------------CCHHHHHHHHHhc
Confidence 11 1122334568999999997 6888888877653
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1e-13 Score=136.58 Aligned_cols=161 Identities=26% Similarity=0.384 Sum_probs=107.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
.|+|+|.+|+|||||||+|+|.++...+..++|............ . ..+.++|+||.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~------------~-----------~~~~~~~~~~~ 63 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG------------A-----------YQAIYVDTPGL 63 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET------------T-----------EEEEEESSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecC------------C-----------ceeEeecCCCc
Confidence 588999999999999999999987766666655543332211110 0 13678899998
Q ss_pred ChhhhH-HHHHHH----HhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQR-QQRLTE----EFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~-~~~~~~----~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
...... ...... .....+|+++++.|.... ......+...+.+...|.++|+||+|...+..++....+.+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~- 141 (179)
T d1egaa1 64 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLAS- 141 (179)
T ss_dssp CHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC-CHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHT-
T ss_pred eecchhhhhhhhhhccccchhhcceeEEEEecCcc-chhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhh-
Confidence 533211 111111 122567888999997754 4455556666777778999999999998775544333332222
Q ss_pred HHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhcc
Q 002437 521 TMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLDG 583 (921)
Q Consensus 521 ~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~~ 583 (921)
.+ ...++++|||+++ .|+++|.+.|.+.+.+
T Consensus 142 ---~~--~~~~~~~vSA~~g---------------------------~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 142 ---QM--NFLDIVPISAETG---------------------------LNVDTIAAIVRKHLPE 172 (179)
T ss_dssp ---TS--CCSEEEECCTTTT---------------------------TTHHHHHHHHHTTCCB
T ss_pred ---hc--CCCCEEEEeCcCC---------------------------CCHHHHHHHHHHhCCC
Confidence 22 3468999999987 6899999999888764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.6e-14 Score=139.75 Aligned_cols=140 Identities=15% Similarity=0.135 Sum_probs=83.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
|+|+++|.+|+|||||+|.+.+....+ ..+++........ ..++.. ..+.++||||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~--~~~~~~~~~~~~i-------------~~~~~~---------~~l~i~D~~g 57 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGP--EAEAAGHTYDRSI-------------VVDGEE---------ASLMVYDIWE 57 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEE-------------EETTEE---------EEEEEEECC-
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCC--cCCeeeeeeccee-------------eccccc---------cceeeeeccc
Confidence 789999999999999999999876532 2222222111000 011211 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
. +.+..++..+++.+|++|+|+|.+++.+..+.. ++..+.. ...|+++|.||+|+..... ...+....
T Consensus 58 ~----e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~-- 131 (168)
T d2gjsa1 58 Q----DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC-- 131 (168)
T ss_dssp ----------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHH--
T ss_pred c----cccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHH--
Confidence 6 445567788999999999999999876655543 4444432 3469999999999864311 11222221
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.... +.+++.+||+++
T Consensus 132 ---~~~~---~~~~~e~Sak~~ 147 (168)
T d2gjsa1 132 ---AVVF---DCKFIETSAALH 147 (168)
T ss_dssp ---HHHH---TSEEEECBTTTT
T ss_pred ---HHhc---CCEEEEEeCCCC
Confidence 1222 368999999997
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.5e-14 Score=139.25 Aligned_cols=142 Identities=19% Similarity=0.246 Sum_probs=91.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcc-ceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTT-NEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||++.|.+..+.+. ..+++ ..+....... .+.. -.+.++||
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~-~~~~~~~~~~~~~~~~-------------~~~~---------~~l~i~Dt 61 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEI-------------NGEK---------VKLQIWDT 61 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCc-ccccccceEEEEEEEE-------------CCEE---------EEEEEEEC
Confidence 58999999999999999999998776433 33332 2222211110 1110 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhh---hcCCeEEEEEeCCCCCCCh-HHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQ---QWKKKVVFVLNKSDLYQNA-FELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~---~~~~~vivVlNK~D~~~~~-~~~~~v~~~~ 517 (921)
||. +++...+..+++.+|++++|+|.+++.+.... +++..+. ....|+++|.||+|+.... ...+++....
T Consensus 62 ~G~----e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~ 137 (171)
T d2ew1a1 62 AGQ----ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFS 137 (171)
T ss_dssp CCS----GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred CCc----hhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHH
Confidence 996 45566778899999999999999876444333 2333333 3457999999999976431 1122222222
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.. ..+++++||+++
T Consensus 138 -----~~~---~~~~~~~SAktg 152 (171)
T d2ew1a1 138 -----EAQ---DMYYLETSAKES 152 (171)
T ss_dssp -----HHH---TCCEEECCTTTC
T ss_pred -----HhC---CCEEEEEccCCC
Confidence 222 367999999997
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.50 E-value=1.1e-13 Score=134.72 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=102.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|.|.+.++. ....||.. +........ + ..+.++|+||
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~-~~~~~T~~-~~~~~~~~~-------------~-----------~~~~i~D~~G 56 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVG-FNMRKITKG-------------N-----------VTIKLWDIGG 56 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCS-EEEEEEEET-------------T-----------EEEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-Ccccccce-eeeeeeeee-------------e-----------EEEEEeeccc
Confidence 68999999999999999999987754 23344432 222211110 0 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh-h---hcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT-Q---QWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l-~---~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
. ......+..++..+|++++|+|+++..+..+.. ++..+ . ..+.|+++|.||.|+.... ...++.+...
T Consensus 57 ~----~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~-~~~~i~~~~~- 130 (164)
T d1zd9a1 57 Q----PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKMN- 130 (164)
T ss_dssp S----HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTT-
T ss_pred c----ccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh-hHHHHHHHHH-
Confidence 6 344456677889999999999998765544332 33333 2 2467999999999987542 2233333221
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
...+.....+++++||+++ .|++++.++|.+.
T Consensus 131 --~~~~~~~~~~~~e~Sa~~g---------------------------~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 131 --LSAIQDREICCYSISCKEK---------------------------DNIDITLQWLIQH 162 (164)
T ss_dssp --GGGCCSSCEEEEECCTTTC---------------------------TTHHHHHHHHHHT
T ss_pred --HHHHHhCCCEEEEEeCcCC---------------------------cCHHHHHHHHHHc
Confidence 1222334568999999987 6888877777664
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.7e-13 Score=135.53 Aligned_cols=163 Identities=19% Similarity=0.258 Sum_probs=104.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|+|++.+...... .++|.......... . +...++
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-------------~~~~~~ 68 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-------------D-------------GKRLVD 68 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-------------T-------------TEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecc-------------c-------------ccceee
Confidence 57899999999999999999999987543322 23332221111110 0 122222
Q ss_pred CCCC--Chh----hhHH---HHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHH
Q 002437 442 TPGT--NVI----LQRQ---QRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEE 512 (921)
Q Consensus 442 TPG~--~~~----~~~~---~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~ 512 (921)
+++. ... .... ...........+.++++.+...........++..+.....++++++||+|+... .+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~-~~~~~ 147 (188)
T d1puia_ 69 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS-GARKA 147 (188)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH-HHHHH
T ss_pred eecccccchhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCH-HHHHH
Confidence 2222 111 1111 122233345667788888898888888999999999999999999999999854 45555
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
..+.+.+.+..+. ...+++++||+++ .|+++|.+.|.+++
T Consensus 148 ~~~~~~~~l~~~~--~~~~~i~vSA~~g---------------------------~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 148 QLNMVREAVLAFN--GDVQVETFSSLKK---------------------------QGVDKLRQKLDTWF 187 (188)
T ss_dssp HHHHHHHHHGGGC--SCEEEEECBTTTT---------------------------BSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--CCCcEEEEeCCCC---------------------------CCHHHHHHHHHHHh
Confidence 5555666555443 3578999999998 79999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=6.7e-14 Score=136.44 Aligned_cols=143 Identities=23% Similarity=0.299 Sum_probs=92.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|.+++.++.......++.......... ++.. -.+.++|||
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~l~i~D~~ 61 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-------------SGQK---------IKLQIWDTA 61 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-------------TTEE---------EEEEEEECT
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEE-------------CCEE---------EEEEEeccC
Confidence 479999999999999999999988765443333333222221111 1111 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh---hhcCCeEEEEEeCCCCCCChHH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT---QQWKKKVVFVLNKSDLYQNAFE-LEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l---~~~~~~vivVlNK~D~~~~~~~-~~~v~~~~~ 518 (921)
|.. ........+++.+|++|+|+|.++..+..... ++..+ .....|+++|.||+|+...... .++.....+
T Consensus 62 g~~----~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~ 137 (166)
T d1z0fa1 62 GQE----RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE 137 (166)
T ss_dssp TGG----GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred Cch----hHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHH
Confidence 963 34456777889999999999998765444332 33333 3345789999999997543211 122222221
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ...+++.+||+++
T Consensus 138 ----~----~~~~~~e~Saktg 151 (166)
T d1z0fa1 138 ----E----NGLLFLEASAKTG 151 (166)
T ss_dssp ----H----TTCEEEECCTTTC
T ss_pred ----H----cCCEEEEEeCCCC
Confidence 1 2468999999998
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=8.6e-14 Score=135.31 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=103.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
|+|+|+|.+|+|||||+|.|++.++.+ ...|++. ......... ++.. ..+.++|||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~d~~ 57 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYL-------------EDRT---------IRLQLWDTA 57 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEC-------------SSCE---------EEEEEEEEC
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCC-ccccceeeeccceeecc-------------CCCc---------eeeeecccC
Confidence 689999999999999999999877543 3333332 221111111 1110 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCCh-HHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNA-FELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~-~~~~~v~~~~~ 518 (921)
|... .......++..+|++++|+|.+++.+..+.. ++..+. ....|+++|.||+|+.... ...++.....+
T Consensus 58 g~~~----~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~ 133 (164)
T d1yzqa1 58 GQER----FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK 133 (164)
T ss_dssp CSGG----GGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred Ccch----hccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHH
Confidence 9743 3345677889999999999998776555433 333332 2467999999999986431 11222222221
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ...++|.+||+++ .|++++.+.|.+.|.
T Consensus 134 ----~----~~~~~~e~SAk~g---------------------------~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 134 ----E----LNVMFIETSAKAG---------------------------YNVKQLFRRVAAALP 162 (164)
T ss_dssp ----H----TTCEEEECCTTTC---------------------------TTHHHHHHHHHHHSC
T ss_pred ----H----cCCEEEEecCCCC---------------------------cCHHHHHHHHHHhhC
Confidence 1 2468999999998 688888888877664
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.6e-13 Score=133.72 Aligned_cols=157 Identities=19% Similarity=0.262 Sum_probs=104.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.|++..+. ....|+........... .+.- ..+.++|+|
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~---------~~l~~~d~~ 59 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVI-------------DGET---------CLLDILDTA 59 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEEEC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CccCCccceeeccceee-------------ecee---------eeeeeeecc
Confidence 379999999999999999999987653 33344433221111110 1111 138899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|.. ........++..+|++++|+|.+++.+..... ++..+.. .+.|+++|.||+|+.......+++.+..+
T Consensus 60 ~~~----~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (166)
T d1ctqa_ 60 GQE----EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR 135 (166)
T ss_dssp CCG----GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred Ccc----ccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHH
Confidence 974 33455677888999999999999765554443 4444432 34799999999998754333333333222
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. . ..++|.+||+++ .|++++...+.+.+.
T Consensus 136 ~-----~---~~~~~e~Sak~g---------------------------~gi~e~f~~i~~~i~ 164 (166)
T d1ctqa_ 136 S-----Y---GIPYIETSAKTR---------------------------QGVEDAFYTLVREIR 164 (166)
T ss_dssp H-----H---TCCEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred H-----h---CCeEEEEcCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 1 2 367999999997 688888777765543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1e-13 Score=136.14 Aligned_cols=144 Identities=20% Similarity=0.254 Sum_probs=92.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|.+.++.+ ...|+.........- ..++.. ..+.++||
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~~------------~~~~~~---------~~~~i~D~ 61 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKII------------NVGGKY---------VKLQIWDT 61 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEE------------EETTEE---------EEEEEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCc-ccccccccceeeEEE------------EecCcc---------eeEEEEEC
Confidence 35899999999999999999999876543 333332221111000 001111 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
||. +++...+..++..+|++++|+|.+++.+..+.. ++..+. ..+.|+++|.||+|+...... .+.....
T Consensus 62 ~G~----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~- 136 (174)
T d2bmea1 62 AGQ----ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF- 136 (174)
T ss_dssp CCS----GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH-
T ss_pred CCc----hhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHH-
Confidence 996 455667888999999999999999765544433 333332 245899999999997543111 1111111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... ...+++.+||+++
T Consensus 137 ----~~~---~~~~~~e~Sak~~ 152 (174)
T d2bmea1 137 ----AQE---NELMFLETSALTG 152 (174)
T ss_dssp ----HHH---TTCEEEECCTTTC
T ss_pred ----HHh---CCCEEEEeeCCCC
Confidence 111 2478999999987
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.47 E-value=2.7e-13 Score=130.46 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=102.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||+|.|.+.++......... ........ . ..+.++|+||
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-~~~~~~~~--~------------------------~~~~~~d~~g 53 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-NVETVEYK--N------------------------ISFTVWDVGG 53 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-CEEEEECS--S------------------------CEEEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-EEEEEeee--e------------------------EEEEEecCCC
Confidence 4799999999999999999998876433221111 11111110 0 1488999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
.. ........+...+|++++++|..++.+..... ++..+ .....|+++|.||.|+..... ..++.. .
T Consensus 54 ~~----~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-~~~i~~---~ 125 (160)
T d1r8sa_ 54 QD----KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITD---K 125 (160)
T ss_dssp CG----GGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHH---H
T ss_pred cc----cchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc-HHHHHH---H
Confidence 74 34456778899999999999998776555442 22222 224579999999999875422 222221 1
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHh
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSF 580 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~ 580 (921)
....+......+++++||++| .|++++.++|.+.
T Consensus 126 ~~~~~~~~~~~~~~~~SAktg---------------------------~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 126 LGLHSLRHRNWYIQATCATSG---------------------------DGLYEGLDWLSNQ 159 (160)
T ss_dssp TTGGGCSSCCEEEEECBTTTT---------------------------BTHHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEeECCCC---------------------------CCHHHHHHHHHhc
Confidence 112233345678999999998 7899988888754
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.47 E-value=4e-14 Score=140.30 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=102.3
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....++|+++|.+|+|||||++.|.+..... ..||... ....... .+ ..+.++
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~--~~~t~~~-~~~~~~~-------------~~-----------~~~~i~ 66 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQIGEVVT--TKPTIGF-NVETLSY-------------KN-----------LKLNVW 66 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE--ECSSTTC-CEEEEEE-------------TT-----------EEEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCc--cccccce-EEEEEee-------------CC-----------EEEEEE
Confidence 3467999999999999999999998765432 1222211 1111100 01 148899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHh-hh---cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYT-QQ---WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l-~~---~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
||||... +......++..+|++++|+|.+++.+..+. .++..+ .. .+.|+++|.||+|+.... ..+++.+
T Consensus 67 D~~g~~~----~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~ 141 (182)
T d1moza_ 67 DLGGQTS----IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-SASEVSK 141 (182)
T ss_dssp EEC--------CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-CHHHHHH
T ss_pred ecccccc----cchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc-CHHHHHH
Confidence 9999742 234566788999999999999988766554 344433 22 457999999999997531 1122222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+. .........+++++||+++ .|++++.++|.+.+.
T Consensus 142 ~~~---~~~~~~~~~~~~e~SA~~g---------------------------~gv~e~~~~l~~~i~ 178 (182)
T d1moza_ 142 ELN---LVELKDRSWSIVASSAIKG---------------------------EGITEGLDWLIDVIK 178 (182)
T ss_dssp HTT---TTTCCSSCEEEEEEBGGGT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHH---HHHHhhCCCEEEEEECCCC---------------------------CCHHHHHHHHHHHHH
Confidence 211 1112223467999999998 788888888887765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.47 E-value=1.2e-13 Score=135.64 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=102.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+++|.+|+|||||+|.|.+..... ..+|+ .+........ . ..+.++||
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~--~~~t~-~~~~~~~~~~-------------~-----------~~~~i~D~ 63 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TIPTV-GFNVETVTYK-------------N-----------VKFNVWDV 63 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCCEE--EEEET-TEEEEEEEET-------------T-----------EEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCC--cccee-eeeEEEeecc-------------c-----------eeeEEecC
Confidence 46899999999999999999998765421 11222 1111111100 0 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHH-hh---hcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRY-TQ---QWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~-l~---~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
||.. .....+..++..+|+++||+|.+...+..+. ..+.. +. ....|+++|.||+|+.... ...++...+
T Consensus 64 ~g~~----~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~-~~~~i~~~~ 138 (173)
T d1e0sa_ 64 GGQD----KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKL 138 (173)
T ss_dssp SCCG----GGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHHHT
T ss_pred CCcc----hhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc-cHHHHHHHH
Confidence 9974 3445677889999999999999876554443 23333 32 2468999999999987532 122222221
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
. ...+......++++||+++ .|++++.++|.+.+
T Consensus 139 ~---~~~~~~~~~~~~e~SA~tg---------------------------~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 139 G---LTRIRDRNWYVQPSCATSG---------------------------DGLYEGLTWLTSNY 172 (173)
T ss_dssp T---GGGCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHC
T ss_pred H---HHHHHhCCCEEEEeeCCCC---------------------------cCHHHHHHHHHHhc
Confidence 1 1122333567899999998 78888888887653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.4e-13 Score=135.75 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=104.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.|.+.++.+......+.......... ++.. ..+.++|||
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~Dt~ 64 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-------------DGNK---------AKLAIWDTA 64 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEEEC
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEE-------------eccc---------cEEEEEECC
Confidence 468999999999999999999987765433333332222211111 0110 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
|... +..+...++..+|++++|+|.+++.+.... .++..+.. ...|++++.||.|........++..+..+
T Consensus 65 G~~~----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~ 140 (177)
T d1x3sa1 65 GQER----FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR 140 (177)
T ss_dssp SSGG----GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH
T ss_pred Cchh----hHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHH
Confidence 9743 334566788999999999998875444333 34555533 34789999999998765333333333332
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. ...+++.+||+++ .|++++.+.+.+.+.
T Consensus 141 ~--------~~~~~~e~Sa~tg---------------------------~gv~e~f~~l~~~l~ 169 (177)
T d1x3sa1 141 K--------HSMLFIEASAKTC---------------------------DGVQCAFEELVEKII 169 (177)
T ss_dssp H--------TTCEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred H--------CCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHc
Confidence 2 2468999999987 688888777766554
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=3.1e-14 Score=138.58 Aligned_cols=141 Identities=20% Similarity=0.237 Sum_probs=91.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.+|+++|.+|+|||||+|.|++.++. ....||... .....+.. ++.. ..+.++|||
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~-~~~~~ti~~~~~~~~~~~-------------~~~~---------~~~~i~d~~ 59 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQV-------------NDED---------VRLMLWDTA 59 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEE-------------TTEE---------EEEEEECCT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-cccccccccccceeeeee-------------cCce---------eeeeeeccC
Confidence 68999999999999999999976543 333444321 11111111 1111 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh--cCCeEEEEEeCCCCCCChH-HHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ--WKKKVVFVLNKSDLYQNAF-ELEEAISFVKE 519 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~--~~~~vivVlNK~D~~~~~~-~~~~v~~~~~~ 519 (921)
|.. +.......+++.+|++++|+|.+++.+..+.. ++..+.+ .+.|+++|.||+|+..... ..+++....
T Consensus 60 g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~-- 133 (164)
T d1z2aa1 60 GQE----EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA-- 133 (164)
T ss_dssp TGG----GTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH--
T ss_pred Ccc----chhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHH--
Confidence 964 23334567789999999999998866555543 5555544 4689999999999864311 112222222
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+.. +.+++.+||+++
T Consensus 134 ---~~~---~~~~~e~Sak~g 148 (164)
T d1z2aa1 134 ---KRL---KLRFYRTSVKED 148 (164)
T ss_dssp ---HHH---TCEEEECBTTTT
T ss_pred ---HHc---CCEEEEeccCCC
Confidence 112 368999999997
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1e-13 Score=136.27 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=83.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEE-EEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|.|++.++.+. ..|++..... ...... +.. ...+.++||
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~-~~~t~~~~~~~~~~~~~------------~~~---------~~~~~~~d~ 59 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQ-YKATIGADFLTKEVTVD------------GDK---------VATMQVWDT 59 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT-C---CCCSCEEEEECCS------------SSC---------CEEEEEECC
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCc-cCcccccceeeeeeeec------------Ccc---------cccceeecc
Confidence 47899999999999999999998775432 3333222111 111110 000 013789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-------cCCeEEEEEeCCCCCCChH--HHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-------WKKKVVFVLNKSDLYQNAF--ELEE 512 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-------~~~~vivVlNK~D~~~~~~--~~~~ 512 (921)
||. +........+++.+|++++|+|.+++.+..... ++..+.. ...|+++|.||+|+..... ..++
T Consensus 60 ~g~----~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~ 135 (175)
T d1ky3a_ 60 AGQ----ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS 135 (175)
T ss_dssp C--------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH
T ss_pred CCc----hhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHH
Confidence 996 344556778899999999999998765544432 4444422 3569999999999864311 1112
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 513 AISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 513 v~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
..+ +...+ ...+++++||+++
T Consensus 136 ~~~-----~~~~~--~~~~~~e~SA~~g 156 (175)
T d1ky3a_ 136 AQE-----LAKSL--GDIPLFLTSAKNA 156 (175)
T ss_dssp HHH-----HHHHT--TSCCEEEEBTTTT
T ss_pred HHH-----HHHHc--CCCeEEEEeCCCC
Confidence 211 11122 2467999999997
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6.6e-14 Score=137.13 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=103.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||+|.+++..+. ....||.......... .++.. ..+.++||+
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~-~~~~~T~~~~~~~~~~-------------~~~~~---------~~l~~~d~~ 58 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIPTVEDTYRQVIS-------------CDKSI---------CTLQITDTT 58 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC-SSCCCCSCEEEEEEEE-------------ETTEE---------EEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCC-CccCcceeecccccee-------------ecccc---------ceecccccc
Confidence 479999999999999999999987753 3455655432211111 11211 147889999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-----cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-----WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-----~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
|.. ........++..+|++++|+|.+++.+..+. .++..+.+ ...|+++|.||+|+.... -..+++.+.
T Consensus 59 g~~----~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~ 134 (171)
T d2erxa1 59 GSH----QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL 134 (171)
T ss_dssp SCS----SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred ccc----cccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHH
Confidence 974 3345567788899999999999876544443 23333322 457999999999985321 112222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.+ .+ ..++|.+||+++ .|++++.+.|.+.+.
T Consensus 135 ~~-----~~---~~~~~e~Sak~~---------------------------~~v~e~f~~l~~~~~ 165 (171)
T d2erxa1 135 AR-----TW---KCAFMETSAKLN---------------------------HNVKELFQELLNLEK 165 (171)
T ss_dssp HH-----HH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHTCC
T ss_pred HH-----Hc---CCeEEEEcCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 21 12 368999999987 688888888877654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=9.1e-14 Score=136.21 Aligned_cols=160 Identities=21% Similarity=0.254 Sum_probs=103.6
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+.+.++|+|+|.+|+||||||+.+++..+. ....||........... ++.. -.+.++
T Consensus 2 m~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~~~ 58 (171)
T d2erya1 2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFV-TDYDPTIEDSYTKQCVI-------------DDRA---------ARLDIL 58 (171)
T ss_dssp CCCEEEEEEEECTTSSHHHHHHHHHHSCCC-SSCCTTCCEEEEEEEEE-------------TTEE---------EEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC-cccCcccccceeeeeee-------------cccc---------cccccc
Confidence 346799999999999999999999987653 44556654433222111 1211 147899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
||||... .......++..+|++++|+|.+++.+..... ++..+ .....|+++|.||+|+..... ..++..
T Consensus 59 d~~g~~~----~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~ 134 (171)
T d2erya1 59 DTAGQEE----FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQ 134 (171)
T ss_dssp ECC--------CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHH
T ss_pred ccccccc----ccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHH
Confidence 9999743 3345667788899999999999876555443 33332 234578999999999864411 122222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+..+ . ...+++.+||+++ .|++++...+.+.+.
T Consensus 135 ~~~~-----~---~~~~~~e~Sak~~---------------------------~~i~e~f~~l~~~i~ 167 (171)
T d2erya1 135 QLAR-----Q---LKVTYMEASAKIR---------------------------MNVDQAFHELVRVIR 167 (171)
T ss_dssp HHHH-----H---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HHHH-----H---cCCEEEEEcCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 2221 1 2468999999987 688888887776654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.4e-14 Score=137.46 Aligned_cols=144 Identities=24% Similarity=0.293 Sum_probs=90.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.+++..+......+++.......... ++.. -.+.++||
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~~~i~d~ 60 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-------------DGKT---------IKAQIWDT 60 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEE-------------CCEE---------EEEEeccc
Confidence 3479999999999999999999987765443333332222211111 1111 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCChHH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNAFE-LEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~~~-~~~v~~~~ 517 (921)
||.. .+......++..+|++|+|+|.+++.+.... +++..+.. .+.|+++|.||+|+...... .+......
T Consensus 61 ~g~e----~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 136 (175)
T d2f9la1 61 AGQE----RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 136 (175)
T ss_dssp SSGG----GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCcH----HHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhh
Confidence 9963 3334566778999999999999976544433 34444443 34699999999998643111 11111111
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ...+++.+||+++
T Consensus 137 -----~~---~~~~~~e~Sa~~g 151 (175)
T d2f9la1 137 -----EK---NNLSFIETSALDS 151 (175)
T ss_dssp -----HH---TTCEEEECCTTTC
T ss_pred -----cc---cCceEEEEecCCC
Confidence 11 3478999999987
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.46 E-value=2.9e-13 Score=141.61 Aligned_cols=121 Identities=18% Similarity=0.275 Sum_probs=86.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCC-CCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGV-VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~-~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
...++|+++|.+|+|||||+|+|+|.+...++. .++|.....+.+.. +| ..+.+|
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~-------------~g-----------~~i~vi 85 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-------------AG-----------FTLNII 85 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-------------TT-----------EEEEEE
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEe-------------cc-----------EEEEEE
Confidence 357899999999999999999999998877654 45666554443321 11 258999
Q ss_pred eCCCCChhh---hHHHHHHHHhc--CCCCEEEEEEeCCC-CCCHHHHHHHHHhhh-----cCCeEEEEEeCCCCCCC
Q 002437 441 DTPGTNVIL---QRQQRLTEEFV--PRADLVLFVISADR-PLTESEVVFLRYTQQ-----WKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 441 DTPG~~~~~---~~~~~~~~~~l--~~aD~il~V~da~~-~~t~~e~~~l~~l~~-----~~~~vivVlNK~D~~~~ 506 (921)
||||+.+.. .........+. ...|+++||++.+. .++..+...++.+.. ..+++++|+||+|...+
T Consensus 86 DTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 86 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred eeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence 999996432 22222233333 56789999999875 478888888877754 23689999999999864
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=9.3e-14 Score=135.38 Aligned_cols=157 Identities=16% Similarity=0.246 Sum_probs=100.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||+|.|++.++.+ ...||+. .+........ +.. ..+.++||
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~-~~~~t~~~~~~~~~i~~~------------~~~----------~~~~i~Dt 58 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDIN------------GKK----------VKLQIWDT 58 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESS------------SCE----------EEEEEECC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCC-ccCCccceeEEEEEEEEC------------CEE----------EEEEEEEC
Confidence 4789999999999999999999876543 3334432 2222221111 111 13789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHH----HHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFL----RYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVK 518 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l----~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~ 518 (921)
||.. .+..++..+++.+|++++|+|.+++.+......+ ........|++++.||.|........++..+...
T Consensus 59 ~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~ 134 (166)
T d1g16a_ 59 AGQE----RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 134 (166)
T ss_dssp TTGG----GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH
T ss_pred CCch----hhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHH
Confidence 9963 2334566788999999999999987555544322 2223345789999999998765333333333222
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
. . ..+++++||+++ .|++++...+.+.+.
T Consensus 135 ~-----~---~~~~~~~Sa~~~---------------------------~~v~e~f~~l~~~i~ 163 (166)
T d1g16a_ 135 E-----L---GIPFIESSAKND---------------------------DNVNEIFFTLAKLIQ 163 (166)
T ss_dssp H-----H---TCCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred h-----c---CCeEEEECCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 1 1 478999999987 688888777766554
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.45 E-value=4e-13 Score=136.83 Aligned_cols=172 Identities=20% Similarity=0.164 Sum_probs=101.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCC--CC---------CCCCccceeEEEEcc-CCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYL--KD---------GVVPTTNEITFLRFS-DLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~--~~---------~~~~tT~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
+.++|+++|+.++|||||+++|+...-. +. ....++.......+. +....+..+......+.......
T Consensus 8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 87 (222)
T d1zunb3 8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 87 (222)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEecc
Confidence 4578999999999999999999743211 00 000111111000000 00001111111111111111111
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcC-CeEEEEEeCCCCCCChH-
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWK-KKVVFVLNKSDLYQNAF- 508 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~-~~vivVlNK~D~~~~~~- 508 (921)
-+.+.|+||||..+.. ..+...+..+|++|+|+|+..+...+..+.+..+...+ +.+|+++||+|+....+
T Consensus 88 ---~~~~~iiD~PGH~dfv----~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~ 160 (222)
T d1zunb3 88 ---KRKFIIADTPGHEQYT----RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER 160 (222)
T ss_dssp ---SEEEEEEECCCSGGGH----HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH
T ss_pred ---ceEEEEEeccchhhhh----hhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccce
Confidence 2469999999985443 33555678899999999999999999999888888888 56899999999986433
Q ss_pred HHHHHHHHHHHHHHHhh-CCCCCeEEEecccchH
Q 002437 509 ELEEAISFVKENTMKLL-NIENVTIYPVSARSTL 541 (921)
Q Consensus 509 ~~~~v~~~~~~~~~~~~-~~~~~~v~~vSA~~~l 541 (921)
..++....+...+.... .....+++|+||+.|.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ 194 (222)
T d1zunb3 161 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGD 194 (222)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCT
T ss_pred ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCc
Confidence 34444444444443321 1134678999999984
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.44 E-value=1.3e-13 Score=134.84 Aligned_cols=142 Identities=21% Similarity=0.234 Sum_probs=91.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.+++.++ +....||......... ..++.. ..+.++|+|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f-~~~~~~T~~~~~~~~~-------------~~~~~~---------~~l~i~d~~ 60 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKV-------------VLDGEE---------VQIDILDTA 60 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEE-------------EETTEE---------EEEEEEECC
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC-CcccCCcccccccccc-------------cccccc---------ccccccccc
Confidence 47999999999999999999987664 3445555543211111 012221 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|.. +.......+++.+|++++|+|.+++.+.... .++..+.+ .+.|+++|.||+|+..... ..+++....
T Consensus 61 g~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~ 136 (168)
T d1u8za_ 61 GQE----DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 136 (168)
T ss_dssp C-------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred ccc----chhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHH
Confidence 974 3445677788999999999999876655544 34444432 4579999999999853210 122332222
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+ . + ..+++++||+++
T Consensus 137 ~----~-~---~~~~~e~Sak~g 151 (168)
T d1u8za_ 137 D----Q-W---NVNYVETSAKTR 151 (168)
T ss_dssp H----H-H---TCEEEECCTTTC
T ss_pred H----H-c---CCeEEEEcCCCC
Confidence 2 1 2 368999999997
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.4e-13 Score=135.16 Aligned_cols=158 Identities=23% Similarity=0.249 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.++|+|+|.+|+|||||++.+++.++. ....||+......... .+|.. -.+.++||
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~~~d~ 61 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICS-------------VDGIP---------ARLDILDT 61 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEE-------------ETTEE---------EEEEEEEC
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCCCC-cccccccccceeeEec-------------cCCee---------eeeecccc
Confidence 4579999999999999999999977653 3444554332221111 01211 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||.... ......++..+|++|+|+|.+++.+..... ++..+. ....|+++|.||+|+.... ...++....
T Consensus 62 ~g~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~ 137 (173)
T d2fn4a1 62 AGQEEF----GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 137 (173)
T ss_dssp CCTTTT----SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred cccccc----ccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHH
Confidence 997432 334567778899999999999776555443 444332 2457999999999985321 111222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 517 VKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. . .+.++|.+||+++ .|++++...+.+.+.
T Consensus 138 ~~----~----~~~~~~e~Sak~g---------------------------~gv~e~f~~l~~~i~ 168 (173)
T d2fn4a1 138 GA----S----HHVAYFEASAKLR---------------------------LNVDEAFEQLVRAVR 168 (173)
T ss_dssp HH----H----TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH----h----cCCEEEEEeCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 21 1 2468999999987 788888888776654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.42 E-value=7.7e-13 Score=129.82 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=102.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|+|.+.++.+......+...+.... + ..+.++|+
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~---------------~------------~~~~~~d~ 66 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN---------------N------------TRFLMWDI 66 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEET---------------T------------EEEEEEEC
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeec---------------c------------eEEEEecc
Confidence 45899999999999999999999987643222211111111100 0 24889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHH-HHH----hhhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVF-LRY----TQQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~-l~~----l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
+|... .......+...++++++|+|.++..+...... ... ......|+++|+||+|+.... ...++.+..
T Consensus 67 ~~~~~----~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~i~~~~ 141 (177)
T d1zj6a1 67 GGQES----LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQFL 141 (177)
T ss_dssp CC--------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHHHH
T ss_pred ccccc----cccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC-cHHHHHHHH
Confidence 99642 23345567788999999999987766554321 111 123568999999999986542 223333322
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
. .........+++++||+++ .|++++.++|.+.|
T Consensus 142 ~---~~~~~~~~~~~~~~Sa~tg---------------------------~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 142 K---LTSIKDHQWHIQACCALTG---------------------------EGLCQGLEWMMSRL 175 (177)
T ss_dssp T---GGGCCSSCEEEEECBTTTT---------------------------BTHHHHHHHHHHHH
T ss_pred H---HHhhHhcCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHh
Confidence 2 1122334678999999998 79999998888765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=2.7e-13 Score=135.73 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=91.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE---EEEccCCccchhhcccccCCCeEEeecCCCcccccEE
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT---FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMII 439 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~l 439 (921)
-.++|+|+|.+|+|||||+|.|++..+. ....||..... .+.+.. +. ..+.+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~--------------~~----------~~l~i 59 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDG--------------KT----------VKLQI 59 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETT--------------EE----------EEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCC-CCcCCccceeEEEEEEEEee--------------EE----------EEEEE
Confidence 3589999999999999999999976643 33344332211 111111 11 14889
Q ss_pred EeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh---hhcCCeEEEEEeCCCCCCChHH-HHHHH
Q 002437 440 VDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT---QQWKKKVVFVLNKSDLYQNAFE-LEEAI 514 (921)
Q Consensus 440 vDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l---~~~~~~vivVlNK~D~~~~~~~-~~~v~ 514 (921)
|||||... ...++..+++.+|++|+|+|.+++.+..+.. ++..+ .....|+++|.||+|+.....- .++..
T Consensus 60 ~Dt~G~e~----~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~ 135 (194)
T d2bcgy1 60 WDTAGQER----FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 135 (194)
T ss_dssp ECCTTTTT----TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred EECCCchh----hHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHh
Confidence 99999742 3344667889999999999998765555443 32223 3355799999999998754211 12221
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
... .. ...+++.+||+.+
T Consensus 136 ~~~-----~~---~~~~~~e~SAk~g 153 (194)
T d2bcgy1 136 EFA-----DA---NKMPFLETSALDS 153 (194)
T ss_dssp HHH-----HH---TTCCEEECCTTTC
T ss_pred hhh-----hc---cCcceEEEecCcC
Confidence 211 11 2467999999987
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.1e-13 Score=131.81 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=99.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||++.+++.++. ....||.......... ..++.. ..+.++||+
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~-~~~~~t~~~~~~~~~~------------~~~~~~---------~~~~~~d~~ 60 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKL------------NIGGKR---------VNLAIWDTA 60 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEE------------ESSSCE---------EEEEEEECC
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCC-cccccccccchheeee------------ccCCcc---------ceeeeeccC
Confidence 479999999999999999999987654 3344443322111110 011111 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCCh-HHHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNA-FELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~-~~~~~v~~~~~ 518 (921)
|. .+.......++..+|++|+|+|.+++.+..... ++..+. ....|+++|.||+|+.... -..+++....
T Consensus 61 g~----~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a- 135 (167)
T d1z08a1 61 GQ----ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYA- 135 (167)
T ss_dssp CC-----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH-
T ss_pred Cc----ceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHH-
Confidence 97 344556778899999999999999876555543 333332 3567899999999986431 1122322221
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+. ...+++.+||+++ .|++++...+.+.+.
T Consensus 136 ----~~---~~~~~~e~Sak~~---------------------------~~v~e~F~~l~~~i~ 165 (167)
T d1z08a1 136 ----ES---VGAKHYHTSAKQN---------------------------KGIEELFLDLCKRMI 165 (167)
T ss_dssp ----HH---TTCEEEEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred ----HH---cCCeEEEEecCCC---------------------------cCHHHHHHHHHHHHh
Confidence 11 2468999999987 688888777766543
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.4e-13 Score=135.14 Aligned_cols=142 Identities=23% Similarity=0.265 Sum_probs=89.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+|+|.+|+|||||+|.+++.++.+....+++........... +.. ..+.++|++|
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~---------~~~~i~d~~g 61 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-------------GKQ---------IKLQIWDTAG 61 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-------------TEE---------EEEEEECCTT
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeee-------------eeE---------EEEEeecccC
Confidence 789999999999999999999887654433333332222211111 110 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh---cCCeEEEEEeCCCCCCCh-HHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ---WKKKVVFVLNKSDLYQNA-FELEEAISFVKE 519 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~---~~~~vivVlNK~D~~~~~-~~~~~v~~~~~~ 519 (921)
.. ........++..+|++|+|+|.+++.+..+. .++..+.. .+.|+++|.||+|+.... ...++.....+
T Consensus 62 ~~----~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~- 136 (173)
T d2a5ja1 62 QE----SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR- 136 (173)
T ss_dssp GG----GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-
T ss_pred cc----chhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHH-
Confidence 74 2334567778999999999999887655544 24444433 457999999999975321 11122222211
Q ss_pred HHHHhhCCCCCeEEEecccch
Q 002437 520 NTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ..+++.+||+++
T Consensus 137 ----~~---~~~~~e~Sa~tg 150 (173)
T d2a5ja1 137 ----EH---GLIFMETSAKTA 150 (173)
T ss_dssp ----HH---TCEEEEECTTTC
T ss_pred ----Hc---CCEEEEecCCCC
Confidence 11 368999999998
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.8e-13 Score=129.27 Aligned_cols=144 Identities=17% Similarity=0.273 Sum_probs=88.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+|+|.+|+|||||++.+++.++.+....+++. ......... +|.. -.+.++|
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------~~l~i~D 62 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-------------DGVK---------VKLQMWD 62 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-------------TTEE---------EEEEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEe-------------cCcE---------EEEEEEE
Confidence 4589999999999999999999887765444444332 111111111 1111 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh---hhcCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT---QQWKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l---~~~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
|||. +.+......++..+|++++|+|.+++.+..... ++..+ .....|+++|.||+|...... ..++....
T Consensus 63 t~G~----e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~ 138 (170)
T d2g6ba1 63 TAGQ----ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL 138 (170)
T ss_dssp CCCC------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred CCCc----hhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHH
Confidence 9996 345566778899999999999998765444332 22222 234578999999999876421 12222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.+ .. ..+++.+||+++
T Consensus 139 ~~-----~~---~~~~~e~Sak~g 154 (170)
T d2g6ba1 139 AK-----EY---GLPFMETSAKTG 154 (170)
T ss_dssp HH-----HH---TCCEEECCTTTC
T ss_pred HH-----Hc---CCEEEEEeCCCC
Confidence 22 12 368999999987
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=3.4e-13 Score=133.67 Aligned_cols=157 Identities=20% Similarity=0.181 Sum_probs=99.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCcccee-EEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEI-TFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
++|+|+|.+|+|||||+|.|++.++. ....||.... ....+... +.. ..+.++|||
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~-~~~~~t~~~~~~~~~~~~~------------~~~----------~~~~~~d~~ 59 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVD------------DRL----------VTMQIWDTA 59 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESS------------SCE----------EEEEEEEEC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-CCcCCccceeeeeeeeeeC------------Cce----------EEEEeeecC
Confidence 78999999999999999999987754 2333443221 11111111 111 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh-------cCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ-------WKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~-------~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|... .......++..+|++++|+|.++..+.... .++..+.. .+.|+++|.||+|+.......++..+
T Consensus 60 g~~~----~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~ 135 (184)
T d1vg8a_ 60 GQER----FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA 135 (184)
T ss_dssp SSGG----GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHH
T ss_pred Cccc----ccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHH
Confidence 9742 223456778999999999999865443333 23333322 34699999999998654322222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. .. ....+++.+||+++ .|++++.+.+.+.+.
T Consensus 136 ~~----~~---~~~~~~~e~Sak~~---------------------------~gI~e~f~~l~~~i~ 168 (184)
T d1vg8a_ 136 WC----YS---KNNIPYFETSAKEA---------------------------INVEQAFQTIARNAL 168 (184)
T ss_dssp HH----HH---TTSCCEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred HH----HH---hcCCeEEEEcCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 21 11 13578999999987 688888777655444
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=7.7e-13 Score=129.81 Aligned_cols=145 Identities=21% Similarity=0.285 Sum_probs=90.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.+++.++.+ ...+|+.......... .++.. ..+.++||
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~-~~~~t~~~~~~~~~~~------------~~~~~---------~~~~i~d~ 62 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLE------------VDGHF---------VTMQIWDT 62 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEE------------ETTEE---------EEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeeeeeeeeee------------ecCce---------eeEeeecc
Confidence 35799999999999999999999876532 3334433222111100 01111 13789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh-------cCCeEEEEEeCCCCCCChHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ-------WKKKVVFVLNKSDLYQNAFELEEAI 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~-------~~~~vivVlNK~D~~~~~~~~~~v~ 514 (921)
||.. ........++..+|++++|+|.+.+.+..... +++.+.. .+.|+++|.||+|+....-..+++.
T Consensus 63 ~g~~----~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~ 138 (174)
T d1wmsa_ 63 AGQE----RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ 138 (174)
T ss_dssp CCCG----GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH
T ss_pred cCcc----eehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHH
Confidence 9963 33456778889999999999998765444332 3333321 3479999999999865322233333
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+..+ +. ...+++.+||+++
T Consensus 139 ~~~~----~~---~~~~~~e~Sak~~ 157 (174)
T d1wmsa_ 139 AWCR----DN---GDYPYFETSAKDA 157 (174)
T ss_dssp HHHH----HT---TCCCEEECCTTTC
T ss_pred HHHH----Hc---CCCeEEEEcCCCC
Confidence 3322 11 2467999999987
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=7.2e-12 Score=134.54 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCccHHH-HHHHHHH-HhcCCCCeEEEEEeCCCCCHHHHHHHHH------CCCCCCCC
Q 002437 322 REKQLIETERSVLLEAIDVIKKASPLMEE-VSLLIDA-VSQIDEPFLLVIVGEYNSGKSSVINALL------GKRYLKDG 393 (921)
Q Consensus 322 ~~~~~~e~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~-~~~~~~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~~~ 393 (921)
-.+.+...+++.+.++++.++...+.-.. ...+... .....+.++|+|+|.||+|||||+|+|. |.++....
T Consensus 10 ~~~~~~~g~~~~la~~it~vE~~~~~~~~~~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavla 89 (327)
T d2p67a1 10 SIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 89 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHcCCHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeec
Confidence 44667778899999999999976544332 3334433 3455678999999999999999999997 55554444
Q ss_pred CCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHHHH
Q 002437 394 VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQQR 454 (921)
Q Consensus 394 ~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~~~ 454 (921)
..|++....---.++ ...........+.++...+.. ...++.||+|.|.+-.
T Consensus 90 vDpss~~~ggailgd---r~rm~~~~~~~~~~ir~~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~------ 160 (327)
T d2p67a1 90 VDPSSPVTGGSILGD---KTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS------ 160 (327)
T ss_dssp ECCC------------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH------
T ss_pred CCCceeeeccccccc---hhHHHHhcccccccccccccccccccchhhhhHHHHHHHhcCCCeEEEeecccccc------
Confidence 445443210000000 000000011122222222210 1246899999997521
Q ss_pred HHHHhcCCCCEEEEEEeCCCCCCHHHHHHHH-HhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHh---hCCCCC
Q 002437 455 LTEEFVPRADLVLFVISADRPLTESEVVFLR-YTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKL---LNIENV 530 (921)
Q Consensus 455 ~~~~~l~~aD~il~V~da~~~~t~~e~~~l~-~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~---~~~~~~ 530 (921)
-..+...+|.+++|++...+ .+.+.++ -+.+ .+-++|+||+|.... +........+...+..+ ...+.+
T Consensus 161 -e~~i~~~aD~~l~v~~P~~G---d~iq~~k~gi~e--~aDi~VvNKaD~~~~-~~~~~~~~~~~~al~~~~~~~~~w~p 233 (327)
T d2p67a1 161 -ETEVARMVDCFISLQIAGGG---DDLQGIKKGLME--VADLIVINKDDGDNH-TNVAIARHMYESALHILRRKYDEWQP 233 (327)
T ss_dssp -HHHHHTTCSEEEEEECC---------CCCCHHHHH--HCSEEEECCCCTTCH-HHHHHHHHHHHHHHHHSCCSBTTBCC
T ss_pred -chhhhhccceEEEEecCCCc---hhhhhhchhhhc--cccEEEEEeecccch-HHHHHHHHHHHHHhhhcccCCCCCcc
Confidence 22455779999999977543 2222111 0111 234889999998753 33344444444333322 123568
Q ss_pred eEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 531 TIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 531 ~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+|+.+||.++ .|+++|.+.|.++..
T Consensus 234 ~V~~~SA~~g---------------------------~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 234 RVLTCSALEK---------------------------RGIDEIWHAIIDFKT 258 (327)
T ss_dssp EEEECBGGGT---------------------------BSHHHHHHHHHHHHH
T ss_pred eeEEEEeeCC---------------------------CCHHHHHHHHHHHHH
Confidence 9999999987 899999999987754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.2e-13 Score=135.24 Aligned_cols=156 Identities=22% Similarity=0.283 Sum_probs=99.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|.+++.++. ....||.. .+....... ++.. ..+.++||
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~-~~~~~Ti~~~~~~~~~~~-------------~~~~---------~~l~i~D~ 59 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHT-------------NRGP---------IKFNVWDT 59 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC------CCEEEETTEEEEEEEECB-------------TTCC---------EEEEEEEC
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCC-cccccceecccccccccc-------------cccc---------cccccccc
Confidence 379999999999999999999987653 23334432 111111111 1110 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH-HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV-VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISFVKE 519 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~-~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~~~~ 519 (921)
||. ..+..+...++..+|++++|+|.+++.+.... +++..+.+ .+.|+++|.||+|+...... ++.
T Consensus 60 ~g~----~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~-~~~------ 128 (170)
T d1i2ma_ 60 AGQ----EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-AKS------ 128 (170)
T ss_dssp TTH----HHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCT-TTS------
T ss_pred ccc----cccceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhh-hHH------
Confidence 995 33445567789999999999999987654443 24444432 46899999999998754211 111
Q ss_pred HHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 520 NTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 520 ~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.........+++.+||+++ .|++++...|.+.+.
T Consensus 129 --~~~~~~~~~~~~e~Sak~~---------------------------~~v~e~f~~l~~~l~ 162 (170)
T d1i2ma_ 129 --IVFHRKKNLQYYDISAKSN---------------------------YNFEKPFLWLARKLI 162 (170)
T ss_dssp --HHHHSSCSSEEEEEBTTTT---------------------------BTTTHHHHHHHHHHH
T ss_pred --HHHHHHcCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHc
Confidence 1112334678999999987 678887777766554
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.1e-13 Score=131.78 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=92.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.++|+++|.+|+|||||+|.+++.++. ....|+........... ++.. -.+.++|+
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~~~d~ 58 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEV-------------DSSP---------SVLEILDT 58 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEE-------------TTEE---------EEEEEEEC
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCC-CccCCceeeeeeeeeec-------------Ccce---------EeeccccC
Confidence 3589999999999999999999987653 34445544322211111 1111 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
||.. ........++..+|++++|+|.+++.+..+.. ++..+. ..+.|+++|.||+|+.... ...++....
T Consensus 59 ~g~~----~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~ 134 (167)
T d1kaoa_ 59 AGTE----QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134 (167)
T ss_dssp CCTT----CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred CCcc----ccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHH
Confidence 9963 33455777889999999999999766555443 333332 2357999999999986431 111222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. ... ..+++.+||+++
T Consensus 135 ~-----~~~---~~~~~e~Sak~g 150 (167)
T d1kaoa_ 135 A-----EEW---GCPFMETSAKSK 150 (167)
T ss_dssp H-----HHH---TSCEEEECTTCH
T ss_pred H-----HHc---CCeEEEECCCCC
Confidence 1 112 367999999998
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1e-12 Score=129.35 Aligned_cols=147 Identities=22% Similarity=0.274 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|.+|+|||||++.+.+..+. ....||........... ++.. ..+.++||||
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~D~~g 59 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTVFENYVADIEV-------------DGKQ---------VELALWDTAG 59 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEEECC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-CCcCCceeeeccccccc-------------cccc---------eeeeccccCc
Confidence 57999999999999999999987653 33445433222211111 1111 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHHH----
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAISF---- 516 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~~---- 516 (921)
.. .+...+..++..+|++|+|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+.......+.....
T Consensus 60 ~~----~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~ 135 (177)
T d1kmqa_ 60 LE----DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 135 (177)
T ss_dssp SG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCC
T ss_pred cc----hhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhccc
Confidence 73 33445778899999999999999766554432 3333333 357999999999998653322221110
Q ss_pred ----HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 ----VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ----~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
-...+.+.+ ...+++.+||+++
T Consensus 136 v~~~e~~~~a~~~--~~~~~~E~SAkt~ 161 (177)
T d1kmqa_ 136 VKPEEGRDMANRI--GAFGYMECSAKTK 161 (177)
T ss_dssp CCHHHHHHHHHHT--TCSEEEECCTTTC
T ss_pred ccHHHHHHHHHHc--CCcEEEEecCCCC
Confidence 011111112 2368899999987
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=3.7e-13 Score=131.24 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=101.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.|.+.++.+ ...||+.......... .++.. ..+.++|||
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~-~~~~t~~~~~~~~~~~------------~~~~~---------~~~~i~d~~ 61 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQ------------YQNEL---------HKFLIWDTA 61 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEE------------ETTEE---------EEEEEEEEC
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCc-cccccccccccccccc------------ccccc---------cceeeeecC
Confidence 4789999999999999999999877643 3444443222111100 01111 136799999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHH-HHHh---hhcCCeEEEEEeCCCCCCChH-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVF-LRYT---QQWKKKVVFVLNKSDLYQNAF-ELEEAISFVK 518 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~-l~~l---~~~~~~vivVlNK~D~~~~~~-~~~~v~~~~~ 518 (921)
|.. +...+...++..+|++|+|+|.+++.+...... +..+ .....|+++|.||+|+..... ..++..+.
T Consensus 62 g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~-- 135 (167)
T d1z0ja1 62 GLE----RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY-- 135 (167)
T ss_dssp CSG----GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH--
T ss_pred Cch----hhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHH--
Confidence 974 334457778899999999999987655555432 2222 235679999999999853211 11222222
Q ss_pred HHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 519 ENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
... ...+++.+||+++ .|++++...+.+.+
T Consensus 136 ---~~~---~~~~~~e~SAk~~---------------------------~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 136 ---ADS---IHAIFVETSAKNA---------------------------ININELFIEISRRI 165 (167)
T ss_dssp ---HHH---TTCEEEECBTTTT---------------------------BSHHHHHHHHHHHC
T ss_pred ---HHH---cCCEEEEEecCCC---------------------------CCHHHHHHHHHHhC
Confidence 111 2468999999987 67888777776554
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=1.3e-13 Score=135.40 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=79.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+..++|+|+|.+|+|||||+++|++..+. ....||.. ........ .++.. ..+.++
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~-------------~~~~~---------~~l~i~ 60 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIE-------------LDGKR---------IKLQIW 60 (173)
T ss_dssp SEEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEE-------------ETTEE---------EEEEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCC-CccCccccceEEEEEEE-------------ECCEE---------EEEEEE
Confidence 34589999999999999999999987653 22233322 11111110 01110 147899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCChHH-HHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNAFE-LEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~~~-~~~v~~ 515 (921)
||||. +.+......+++.+|++|+|+|.+++.+..... ++..+. ....|+++|.||.|....... .++...
T Consensus 61 D~~G~----e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~ 136 (173)
T d2fu5c1 61 DTAGQ----ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEK 136 (173)
T ss_dssp EC-------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHH
T ss_pred ECCCc----hhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHH
Confidence 99996 345566777889999999999998766554443 333333 345799999999998764222 222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.... ...+++.+||+++ .|++++...+.+.+.
T Consensus 137 ~~~~--------~~~~~~e~Sa~~g---------------------------~gv~e~f~~l~~~i~ 168 (173)
T d2fu5c1 137 LALD--------YGIKFMETSAKAN---------------------------INVENAFFTLARDIK 168 (173)
T ss_dssp HHHH--------HTCEEEECCC------------------------------CCHHHHHHHHHHHHH
T ss_pred HHHh--------cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 2211 1478999999987 688887777766543
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.9e-13 Score=134.39 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=101.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEE--EEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITF--LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
.++|+|+|.+|+|||||+|.|++.++.+. ..+++. .+.. +.+..... ......+. ...+.++
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~---------~~~~~i~ 69 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPK-FITTVGIDFREKRVVYNAQGP-----NGSSGKAF---------KVHLQLW 69 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE-EEEEEEEEEEEEEEEEEC------------CCEE---------EEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCc-cCCcccceeeEEEEEEecccc-----cccccccc---------eEEeccc
Confidence 57999999999999999999998775432 222211 1111 11111000 00000000 1248899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAI 514 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~ 514 (921)
||||. +++..++..++..+|++|+|+|.+++.+..... ++..+.. ...|+++|.||+|+..... ..++..
T Consensus 70 dt~G~----e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~ 145 (186)
T d2f7sa1 70 DTAGQ----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR 145 (186)
T ss_dssp EEESH----HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred cCCcc----hhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHH
Confidence 99995 566677888999999999999998765554443 3333332 3368999999999854311 112222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.. +. .+.+++.+||+++ .|++++.+.+.+.+.
T Consensus 146 ~~~-----~~---~~~~~~e~Sak~~---------------------------~~i~e~f~~l~~~i~ 178 (186)
T d2f7sa1 146 ELA-----DK---YGIPYFETSAATG---------------------------QNVEKAVETLLDLIM 178 (186)
T ss_dssp HHH-----HH---TTCCEEEEBTTTT---------------------------BTHHHHHHHHHHHHH
T ss_pred HHH-----HH---cCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 221 11 2368999999987 678877777776554
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=4.6e-13 Score=130.93 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=100.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEE-EEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITF-LRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+|+|.+|+|||||++.|++.++. ....|+...... ..... .+.. -.+.++||
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~-~~~~~t~~~~~~~~~~~~-------------~~~~---------~~~~~~d~ 62 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFH-EFQESTIGAAFLTQTVCL-------------DDTT---------VKFEIWDT 62 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEE-------------TTEE---------EEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC-cccccccccccccceeec-------------cceE---------EEEEeccC
Confidence 479999999999999999999977653 333333322111 11110 1110 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh---hcCCeEEEEEeCCCCCCCh-HHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ---QWKKKVVFVLNKSDLYQNA-FELEEAISFV 517 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~---~~~~~vivVlNK~D~~~~~-~~~~~v~~~~ 517 (921)
||.. .+..+...+++.+|++++|+|..+..+..... ++..+. ..+.|+++|.||+|+.... -..++.....
T Consensus 63 ~g~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~ 138 (170)
T d1r2qa_ 63 AGQE----RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138 (170)
T ss_dssp CCSG----GGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred CCch----hhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHH
Confidence 9974 33445667889999999999998765544443 333332 2457899999999975331 1112222211
Q ss_pred HHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 518 KENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ...+++.+||+++ .|++++...|.+.+.
T Consensus 139 -----~~---~~~~~~e~SAk~g---------------------------~~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 139 -----DD---NSLLFMETSAKTS---------------------------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp -----HH---TTCEEEECCTTTC---------------------------TTHHHHHHHHHHTSC
T ss_pred -----Hh---cCCEEEEeeCCCC---------------------------CCHHHHHHHHHHHHh
Confidence 11 2478999999997 678888877766554
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.4e-12 Score=129.40 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=93.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||++.++...+ +....||+.......... .+.. -.+.++|||
T Consensus 9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~~Ti~~~~~~~~~~-------------~~~~---------~~l~i~D~~ 65 (185)
T d2atxa1 9 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTV-------------GGKQ---------YLLGLYDTA 65 (185)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEES-------------SSCE---------EEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCceeeeeeEEEee-------------CCce---------EEeeccccc
Confidence 47899999999999999999998664 345556654332221111 1111 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHH--HHHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH-----
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEV--VFLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI----- 514 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~--~~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~----- 514 (921)
|.. ........++..+|++++|+|.+++.+..+. .++..++. .+.|+++|.||+|+..+........
T Consensus 66 g~e----~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r 141 (185)
T d2atxa1 66 GQE----DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK 141 (185)
T ss_dssp CSS----SSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred ccc----hhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccc
Confidence 974 2334567789999999999999987655443 23333333 3569999999999986532221110
Q ss_pred ----HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 ----SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ----~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...+ +...++ ..+++.+||+++
T Consensus 142 ~v~~~~~~~-~a~~~~--~~~~~E~SAk~~ 168 (185)
T d2atxa1 142 PICVEQGQK-LAKEIG--ACCYVECSALTQ 168 (185)
T ss_dssp CCCHHHHHH-HHHHHT--CSCEEECCTTTC
T ss_pred cccHHHHHH-HHHHcC--CCEEEEecCCCC
Confidence 11111 111122 367889999987
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-12 Score=128.52 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=99.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
..++|+++|.+|+|||||+|.+.+.........++|.. .....+. .++.. ..+.++|
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~-------------~~~~~---------~~~~~~d 59 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM-------------VDGES---------ATIILLD 59 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEE-------------ETTEE---------EEEEEEC
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeec-------------cCCce---------eeeeeec
Confidence 35899999999999999999999876543333333332 1111111 01111 1478999
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCCh-HHHHHHHH
Q 002437 442 TPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNA-FELEEAIS 515 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~-~~~~~v~~ 515 (921)
+||..+. ..-+...+++.+|++|+|+|.+++.+..+.. ++..+.. ...|+++|.||+|+.... -..++..+
T Consensus 60 ~~~~~g~---e~~~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~ 136 (172)
T d2g3ya1 60 MWENKGE---NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA 136 (172)
T ss_dssp CTTTTHH---HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ccccccc---ccccccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHH
Confidence 9986321 1225667889999999999998765544433 3333432 357999999999985421 11222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+...+ +.+++.+||+++ .|++++...+.+.+.
T Consensus 137 -----~a~~~---~~~~~e~Sak~g---------------------------~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 137 -----CAVVF---DCKFIETSAAVQ---------------------------HNVKELFEGIVRQVR 168 (172)
T ss_dssp -----HHHHH---TCEEEECBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred -----HHHHc---CCeEEEEeCCCC---------------------------cCHHHHHHHHHHHHH
Confidence 12222 368999999987 688887777665543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=6.7e-13 Score=129.28 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=91.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+|+|.+|+|||||+|.|++..+. ....||.......... .+|.. ..+.++|||
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~-~~~~~t~~~~~~~~~~-------------~~~~~---------~~l~i~d~~ 60 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLIT-------------VNGQE---------YHLQLVDTA 60 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCSSCCEEEEEEEE-------------ETTEE---------EEEEEEECC
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCC-cccCcceecccceEEe-------------cCcEE---------EEeeecccc
Confidence 478999999999999999999877653 3344544322111110 01211 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCCh-HHHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNA-FELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~-~~~~~v~~~~ 517 (921)
|.... ..+...++..+|++|+|+|.+++.+..... ++..+. ..+.|+++|.||+|+.... -..+++....
T Consensus 61 g~~~~----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a 136 (167)
T d1xtqa1 61 GQDEY----SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 136 (167)
T ss_dssp CCCTT----CCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ccccc----ccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHH
Confidence 97532 234556789999999999999876665543 333432 3457999999999985321 1123332222
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+ .+ ..+++.+||+++
T Consensus 137 ~-----~~---~~~~~e~Sak~~ 151 (167)
T d1xtqa1 137 E-----SW---NAAFLESSAKEN 151 (167)
T ss_dssp H-----HH---TCEEEECCTTCH
T ss_pred H-----Hc---CCEEEEEecCCC
Confidence 2 12 367899999998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=2.4e-12 Score=129.91 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=78.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..|+|+++|.+|+|||||+|+|++.++.+. +|........... + ..+.++||
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~~~~~~-------------~-----------~~~~l~D~ 53 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSAADYD-------------G-----------SGVTLVDF 53 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEEETTGG-------------G-----------SSCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceEEEEEeC-------------C-----------eEEEEEec
Confidence 358999999999999999999999875421 2222211111110 1 25899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC--CHHHHHH-------HHHhhhcCCeEEEEEeCCCCCCC
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPL--TESEVVF-------LRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~--t~~e~~~-------l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
||..................+|.+++++|+.... .....++ +......+.|+++|+||+|+...
T Consensus 54 ~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 54 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 126 (209)
T ss_dssp CCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence 9987555555566667778889999999977432 1222222 23344567899999999999764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=1.5e-12 Score=127.16 Aligned_cols=142 Identities=21% Similarity=0.284 Sum_probs=92.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.+|+|||||++.+++..+.+ ...||.......... .++.. ..+.++||+
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~---------~~~~i~d~~ 60 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVP-DYDPTIEDSYLKHTE-------------IDNQW---------AILDVLDTA 60 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCT-TCCTTCCEEEEEEEE-------------ETTEE---------EEEEEEECC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCc-ccCcceeeccccccc-------------ccccc---------ccccccccc
Confidence 4899999999999999999999876543 344444322111100 01111 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhh----hcCCeEEEEEeCCCCCCChH-HHHHHHHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQ----QWKKKVVFVLNKSDLYQNAF-ELEEAISFV 517 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~----~~~~~vivVlNK~D~~~~~~-~~~~v~~~~ 517 (921)
|... .......+++.+|++++|+|.+++.+..... ++..+. ....|+++|.||+|+..... ..+++.+..
T Consensus 61 g~~~----~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~ 136 (169)
T d1x1ra1 61 GQEE----FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 136 (169)
T ss_dssp SCGG----GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH
T ss_pred cccc----cccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHH
Confidence 9743 3344677889999999999999766555543 444432 34579999999999865411 123333322
Q ss_pred HHHHHHhhCCCCCeEEEecccch
Q 002437 518 KENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 518 ~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+. . +.+++.+||+++
T Consensus 137 ~~-----~---~~~~~e~Sak~~ 151 (169)
T d1x1ra1 137 TK-----Y---NIPYIETSAKDP 151 (169)
T ss_dssp HH-----H---TCCEEEEBCSSS
T ss_pred HH-----c---CCEEEEEcCCCC
Confidence 21 2 367999999876
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=1.2e-12 Score=127.04 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=91.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeE-EEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEIT-FLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
.++|+++|.+|+|||||+|.+++.++.+.. .+++.... ...+... .+. ..+.++|+
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~----------~~~~~~~~ 58 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDID------------GER----------IKIQLWDT 58 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEET------------TEE----------EEEEEEEC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcc-Ccccccccceeeeeee------------ccc----------eEEEEEec
Confidence 478999999999999999999987654332 23322111 1111100 000 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCCh-HHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNA-FELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~-~~~~~v~~~ 516 (921)
+|... ........++..+|++|+|+|.+++.+..+.. ++..+.+ .+.|+++|.||+|+.... -..+++.+.
T Consensus 59 ~~~~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~ 135 (165)
T d1z06a1 59 AGQER---FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF 135 (165)
T ss_dssp CCSHH---HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred cCchh---hccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHH
Confidence 99632 22233567889999999999999876666553 5555433 357999999999986431 112222222
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. +. .+.+++.+||+++
T Consensus 136 ~-----~~---~~~~~~e~SAkt~ 151 (165)
T d1z06a1 136 A-----DT---HSMPLFETSAKNP 151 (165)
T ss_dssp H-----HH---TTCCEEECCSSSG
T ss_pred H-----HH---CCCEEEEEecccC
Confidence 2 11 2367999999986
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.5e-12 Score=129.90 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=94.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..+|+++|.+|+|||||++.+++..+. ....||........... ++.. ..+.++|||
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~-~~~~~t~~~~~~~~~~~-------------~~~~---------~~l~i~D~~ 59 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMI-------------GGEP---------YTLGLFDTA 59 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEE-------------TTEE---------EEEEEEEEC
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCC-CCcCCceeeecceeEee-------------CCce---------eeeeccccc
Confidence 368999999999999999999987653 44555554322211111 1111 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH-----
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI----- 514 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~----- 514 (921)
|.. ++......++..+|++++|+|.+++.+..+.. ++..+.. .+.|+++|.||+|+.......+...
T Consensus 60 g~~----~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~ 135 (191)
T d2ngra_ 60 GQE----DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK 135 (191)
T ss_dssp CSG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred cch----hhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccc
Confidence 974 34456778889999999999999876655552 3333333 4579999999999976532222110
Q ss_pred ----HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 ----SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ----~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+...+...+. ...+++.+||+++
T Consensus 136 ~v~~~~~~~~~~~~---~~~~~~e~SAk~~ 162 (191)
T d2ngra_ 136 PITPETAEKLARDL---KAVKYVECSALTQ 162 (191)
T ss_dssp CCCHHHHHHHHHHT---TCSCEEECCTTTC
T ss_pred cccHHHHHHHHHHc---CCCeEEEEeCCCC
Confidence 1111111111 2467999999987
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.5e-12 Score=126.85 Aligned_cols=144 Identities=19% Similarity=0.198 Sum_probs=92.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+.++|+++|.+|+|||||++.+++.++. ....|+.......... ..... -.+.++|+
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~-~~~~~t~~~~~~~~~~------------~~~~~----------~~~~~~d~ 58 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVE------------VDCQQ----------CMLEILDT 58 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEE------------SSSCE----------EEEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccccceeEE------------eeeeE----------EEeccccc
Confidence 3589999999999999999999987754 3334443322211111 01111 14889999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHhhh----cCCeEEEEEeCCCCCCChH-HHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYTQQ----WKKKVVFVLNKSDLYQNAF-ELEEAISF 516 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l~~----~~~~vivVlNK~D~~~~~~-~~~~v~~~ 516 (921)
+|... .......++..+|++|+|+|.+++.+..+.. ++..+.+ ...|+++|.||+|+..... ..++....
T Consensus 59 ~g~~~----~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~ 134 (167)
T d1c1ya_ 59 AGTEQ----FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL 134 (167)
T ss_dssp CSSCS----STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred cCccc----ccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHH
Confidence 99743 2334667889999999999999876665553 4444432 3469999999999864311 11222221
Q ss_pred HHHHHHHhhCCCCCeEEEecccch
Q 002437 517 VKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
. .+. ...+++.+||+++
T Consensus 135 ~----~~~---~~~~~~e~Sak~g 151 (167)
T d1c1ya_ 135 A----RQW---CNCAFLESSAKSK 151 (167)
T ss_dssp H----HHT---TSCEEEECBTTTT
T ss_pred H----HHh---CCCEEEEEcCCCC
Confidence 1 121 2478999999998
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.8e-12 Score=126.80 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=94.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..++|+|+|.+|+|||||+|.|++..+. ....||........... ++.. ..+.++|+
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~-~~~~~ti~~~~~~~~~~-------------~~~~---------~~~~~~d~ 60 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-------------DGKP---------VNLGLWDT 60 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEE-------------TTEE---------EEEEEECC
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCCC-cccccceeeceeeeeec-------------cCcc---------eEEEeecc
Confidence 3579999999999999999999987754 34555554332221111 1111 14789999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHHH---
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAIS--- 515 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~~--- 515 (921)
+|.. .+......++..+|++++|+|.+++.+..+.. ++..++. .+.|+++|.||+|+.......+....
T Consensus 61 ~g~~----~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 136 (183)
T d1mh1a_ 61 AGQE----DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 136 (183)
T ss_dssp CCSG----GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred cccc----cchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccc
Confidence 9973 33445667889999999999999766555442 3333333 35799999999998755222111111
Q ss_pred ------HHHHHHHHhhCCCCCeEEEecccch
Q 002437 516 ------FVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 516 ------~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
......++ ....++|.+||+++
T Consensus 137 ~~~~~~~~~~~a~~---~~~~~~~E~SAk~~ 164 (183)
T d1mh1a_ 137 TPITYPQGLAMAKE---IGAVKYLECSALTQ 164 (183)
T ss_dssp CCCCHHHHHHHHHH---TTCSEEEECCTTTC
T ss_pred cchhhHHHHHHHHH---cCCceEEEcCCCCC
Confidence 00111111 12468999999987
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=1.4e-12 Score=136.21 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=93.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
+..+|+++|+.++|||||+.+|+-..-............+...+ ..++..+..........+.|.. ..++|+||
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~---~~~E~~r~~si~~~~~~~~~~~---~~~n~iDt 78 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF---MEQERERGITITAAVTTCFWKD---HRINIIDA 78 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC----------------------CCCCCCCSEEEEEETT---EEEEEECC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEec---cHHHHhcCCccccceeeeccCC---eEEEEecC
Confidence 34689999999999999999997321111111101111111111 1112233333333333333321 35999999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
||..++..+ +...+.-+|..|+|+|+..+...+....++.+.+.+.|.++++||+|.... +..++.+.+++.
T Consensus 79 PG~~dF~~e----~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~a--d~~~~l~ei~~~ 150 (276)
T d2bv3a2 79 PGHVDFTIE----VERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA--DLWLVIRTMQER 150 (276)
T ss_dssp CSSSSCSTT----HHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTC--CHHHHHHHHHHT
T ss_pred CchhhhHHH----HHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccccccc--ccchhHHHHHHH
Confidence 998766544 455667799999999999999999999999999999999999999998764 556666666654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.32 E-value=9.5e-12 Score=120.30 Aligned_cols=160 Identities=17% Similarity=0.203 Sum_probs=103.8
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
+...++|+++|.+|+|||||+|++++.++... .++.. .....+.. ++ ..+.++
T Consensus 2 m~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~--~~~~~-~~~~~~~~-------------~~-----------~~~~~~ 54 (169)
T d1upta_ 2 MTREMRILILGLDGAGKTTILYRLQVGEVVTT--IPTIG-FNVETVTY-------------KN-----------LKFQVW 54 (169)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCC--CCCSS-EEEEEEEE-------------TT-----------EEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHhCCCCcce--ecccc-eeeeeecc-------------Cc-----------eEEEEe
Confidence 34568999999999999999999999876432 22222 11111111 01 147899
Q ss_pred eCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHh---hhcCCeEEEEEeCCCCCCChHHHHHHHH
Q 002437 441 DTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYT---QQWKKKVVFVLNKSDLYQNAFELEEAIS 515 (921)
Q Consensus 441 DTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l---~~~~~~vivVlNK~D~~~~~~~~~~v~~ 515 (921)
|+||.... ......+...++.+++++|........... +...+ .....|+++|.||+|+..... ..++..
T Consensus 55 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~~i~~ 129 (169)
T d1upta_ 55 DLGGLTSI----RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMAN 129 (169)
T ss_dssp EECCCGGG----GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHH
T ss_pred eccccccc----cccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HHHHHH
Confidence 99997433 234556778899999999987665544432 22222 234579999999999986522 222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 516 FVKENTMKLLNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
.. ..........++|++||+.+ .|++++.+.|.+.+.
T Consensus 130 ~~---~~~~~~~~~~~~~~~SA~~g---------------------------~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 130 SL---GLPALKDRKWQIFKTSATKG---------------------------TGLDEAMEWLVETLK 166 (169)
T ss_dssp HH---TGGGCTTSCEEEEECCTTTC---------------------------TTHHHHHHHHHHHHH
T ss_pred HH---HHHHHhcCCCEEEEEeCCCC---------------------------CCHHHHHHHHHHHHH
Confidence 22 12223335679999999987 788888888877664
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=2.2e-12 Score=125.95 Aligned_cols=142 Identities=22% Similarity=0.276 Sum_probs=91.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccce-eEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNE-ITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDT 442 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDT 442 (921)
..+|+|+|.+|+|||||++.+++.++.. ...||... +....... .+.. -.+.++||
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~-~~~~t~~~~~~~~~i~~-------------~~~~---------~~l~i~d~ 59 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTI-------------NEHT---------VKFEIWDT 59 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEE-------------TTEE---------EEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCc-cccccccceeecccccc-------------cccc---------cccccccc
Confidence 3689999999999999999999887643 33444331 11111110 1111 14899999
Q ss_pred CCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHH-HHHh---hhcCCeEEEEEeCCCCCCChH----HHHHHH
Q 002437 443 PGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVF-LRYT---QQWKKKVVFVLNKSDLYQNAF----ELEEAI 514 (921)
Q Consensus 443 PG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~-l~~l---~~~~~~vivVlNK~D~~~~~~----~~~~v~ 514 (921)
||.. ........++..+|++++|+|.+++.+...... +..+ .....|+++|.||+|+..... ..++..
T Consensus 60 ~g~~----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~ 135 (170)
T d1ek0a_ 60 AGQE----RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGE 135 (170)
T ss_dssp CCSG----GGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHH
T ss_pred CCch----hHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHH
Confidence 9974 333456778999999999999998766555542 2222 234579999999999754311 112222
Q ss_pred HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+..+. . +.+++.+||+++
T Consensus 136 ~~~~~-----~---~~~~~e~Sak~g 153 (170)
T d1ek0a_ 136 KLAEE-----K---GLLFFETSAKTG 153 (170)
T ss_dssp HHHHH-----H---TCEEEECCTTTC
T ss_pred HHHHH-----c---CCEEEEecCCCC
Confidence 22221 1 478999999987
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.28 E-value=1.1e-11 Score=128.92 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=94.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+|+|+.++|||||+.+|+...-............+ +.+...++..+......+...+.|.. ..++||||||
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~---~~D~~~~E~~r~~ti~~~~~~~~~~~---~~~n~iDtPG 76 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTT---TTDYTPEAKLHRTTVRTGVAPLLFRG---HRVFLLDAPG 76 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCC---SSCCSHHHHHTTSCCSCEEEEEEETT---EEEEEEECCC
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccc---cccchHHHHHhCCeEEeecccccccc---cceeEEccCc
Confidence 47999999999999999999743211111111111101 11222222333333333333333322 3589999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENT 521 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~ 521 (921)
..++.. -+...+.-+|.+|+|+|+..+...+....++.+.+.+.|.++++||+|...+ ..+....+++.+
T Consensus 77 h~dF~~----e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~~~---~~~~l~~~~~~l 146 (267)
T d2dy1a2 77 YGDFVG----EIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGD---YYALLEDLRSTL 146 (267)
T ss_dssp SGGGHH----HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCCC---HHHHHHHHHHHH
T ss_pred hhhhhh----hhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccccc---chhhhhhHHHHh
Confidence 865443 3556778899999999999999999999999999999999999999997533 344445555544
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.6e-12 Score=122.81 Aligned_cols=140 Identities=24% Similarity=0.234 Sum_probs=89.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
.+|+++|.+|+|||||++.+++..+. ....||......... ..++.. -.+.++||||
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f~-~~~~pTi~~~~~~~~-------------~~~~~~---------~~l~i~D~~g 59 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQA-------------TIDDEV---------VSMEILDTAG 59 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEE-------------EETTEE---------EEEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeccccccc-------------cccccc---------eEEEEeeccc
Confidence 68999999999999999999987653 445565432111110 112221 1489999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHH-HHHh----hhcCCeEEEEEeCCCCCCCh-HHHHHHHHHHH
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVF-LRYT----QQWKKKVVFVLNKSDLYQNA-FELEEAISFVK 518 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~-l~~l----~~~~~~vivVlNK~D~~~~~-~~~~~v~~~~~ 518 (921)
.... .....++..+|++++|+|.+++.+.....- ...+ ...+.|+++|.||+|+.... -..+++.+..+
T Consensus 60 ~~~~-----~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~ 134 (168)
T d2atva1 60 QEDT-----IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT 134 (168)
T ss_dssp CCCC-----HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred cccc-----ccchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH
Confidence 7532 124567788999999999998655544432 2221 22468999999999985321 01223322222
Q ss_pred HHHHHhhCCCCCeEEEecccch
Q 002437 519 ENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 519 ~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+ + ..++|.+||+++
T Consensus 135 ~-----~---~~~~~e~Saktg 148 (168)
T d2atva1 135 E-----L---ACAFYECSACTG 148 (168)
T ss_dssp H-----H---TSEEEECCTTTC
T ss_pred H-----h---CCeEEEEccccC
Confidence 1 2 368999999986
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.26 E-value=9.4e-11 Score=125.59 Aligned_cols=219 Identities=18% Similarity=0.143 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCccHHH-HHHHHHH-HhcCCCCeEEEEEeCCCCCHHHHHHHHHC------CCCCCCCC
Q 002437 323 EKQLIETERSVLLEAIDVIKKASPLMEE-VSLLIDA-VSQIDEPFLLVIVGEYNSGKSSVINALLG------KRYLKDGV 394 (921)
Q Consensus 323 ~~~~~e~~~~~l~~~~~~l~~~~~~~~~-~~~l~~~-~~~~~~~~~I~vvG~~~aGKSTLiNaLlg------~~~~~~~~ 394 (921)
.+.++..+++.+.+.++.++...+.-.. ...+.+. .....+.++|+|+|.||+||||||++|.. .++.....
T Consensus 8 ~~~~~~g~~~~lar~it~~E~~~~~~~~~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViav 87 (323)
T d2qm8a1 8 RERLLAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 87 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeec
Confidence 3556777889999999999875543322 3334433 34556789999999999999999999973 33333333
Q ss_pred CCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------------------cccccEEEeCCCCChhhhHHHHH
Q 002437 395 VPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP-------------------ILKEMIIVDTPGTNVILQRQQRL 455 (921)
Q Consensus 395 ~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------------------~l~~l~lvDTPG~~~~~~~~~~~ 455 (921)
.|++...--.-. +...........++.++...++. ...+++||.|.|.+-..
T Consensus 88 Dpss~~~gg~ll---gdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e------ 158 (323)
T d2qm8a1 88 DPSSTRTGGSIL---GDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE------ 158 (323)
T ss_dssp CGGGGSSCCCSS---CCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH------
T ss_pred ccccHHHHhccc---cchhhHHHHhcccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhh------
Confidence 333321000000 00001111112233333332211 11368999999986221
Q ss_pred HHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhh---CCCCCeE
Q 002437 456 TEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLL---NIENVTI 532 (921)
Q Consensus 456 ~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~v 532 (921)
.....-+|.+++|+....+. +.+.++. ......-++|+||+|+.....-...........+..+. ..+.++|
T Consensus 159 -~~~~~~~D~~v~v~~p~~GD---~iQ~~k~-gilE~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V 233 (323)
T d2qm8a1 159 -TAVADLTDFFLVLMLPGAGD---ELQGIKK-GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPV 233 (323)
T ss_dssp -HHHHTTSSEEEEEECSCC---------CCT-THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCE
T ss_pred -hhhhcccceEEEEeeccchh---hhhhhhh-hHhhhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCce
Confidence 12335599999999887542 2221110 00113458999999988764444444444444333221 1256899
Q ss_pred EEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhhc
Q 002437 533 YPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFLD 582 (921)
Q Consensus 533 ~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l~ 582 (921)
+.+||.++ .|+++|.+.|.++..
T Consensus 234 ~~~Sa~~g---------------------------~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 234 VTISGLHG---------------------------KGLDSLWSRIEDHRS 256 (323)
T ss_dssp EEEBTTTT---------------------------BSHHHHHHHHHHHHH
T ss_pred EEEEecCC---------------------------CCHHHHHHHHHHHHH
Confidence 99999987 799999999988765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1.4e-11 Score=121.36 Aligned_cols=146 Identities=25% Similarity=0.274 Sum_probs=91.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPG 444 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG 444 (921)
++|+++|.+|+|||||++.++...+ +....||........+.. ++.. -.+.++||||
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f-~~~~~~t~~~~~~~~~~~-------------~~~~---------~~~~i~D~~g 59 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEI-------------DTQR---------IELSLWDTSG 59 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC-------------SSCE---------EEEEEEEECC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-CCccCCceeecccccccc-------------cceE---------Eeeccccccc
Confidence 6899999999999999999998765 344455543322221111 1111 1478999999
Q ss_pred CChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH--HHHHhhh--cCCeEEEEEeCCCCCCChHHHHHHH------
Q 002437 445 TNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV--FLRYTQQ--WKKKVVFVLNKSDLYQNAFELEEAI------ 514 (921)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~--~l~~l~~--~~~~vivVlNK~D~~~~~~~~~~v~------ 514 (921)
... +......++..+|++|+|+|.+++.+..... +...+.. .+.|+++|.||+|+..+........
T Consensus 60 ~~~----~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~ 135 (179)
T d1m7ba_ 60 SPY----YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTP 135 (179)
T ss_dssp SGG----GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCC
T ss_pred ccc----ccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCc
Confidence 742 3334567889999999999998776544432 2233332 4679999999999875432221110
Q ss_pred ---HHHHHHHHHhhCCCCCeEEEecccch
Q 002437 515 ---SFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 515 ---~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
+......++ . ...+++.+||+++
T Consensus 136 V~~~e~~~~a~~-~--~~~~y~E~SAk~~ 161 (179)
T d1m7ba_ 136 VSYDQGANMAKQ-I--GAATYIECSALQS 161 (179)
T ss_dssp CCHHHHHHHHHH-H--TCSEEEECBTTTB
T ss_pred chHHHHHHHHHH-h--CCCeEEEEeCCCC
Confidence 111111111 1 2367889999887
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=1.2e-11 Score=118.81 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=97.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|.|.+.++.. ..||.. .+....... + ....++|++|.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~--~~~t~~-~~~~~~~~~------------~------------~~~~~~~~~~~ 54 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLAT--LQPTWH-PTSEELAIG------------N------------IKFTTFDLGGH 54 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC--CCCCCS-CEEEEECCT------------T------------CCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCe--eeceee-EeEEEeccC------------C------------eeEEEEeeccc
Confidence 68999999999999999999987642 233332 222111110 1 14789999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAFELEEAISFVKEN 520 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~ 520 (921)
... ......+...++.+++++|..+........ ++... .....|++++.||.|+.... ...++.+.+...
T Consensus 55 ~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~-~~~~i~~~~~~~ 129 (166)
T d2qtvb1 55 IQA----RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV-SEAELRSALGLL 129 (166)
T ss_dssp GGG----GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC-CHHHHHHHHTCS
T ss_pred hhh----hhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC-CHHHHHHHhhhh
Confidence 432 234666778999999999998765544332 22222 23567999999999987531 122222221100
Q ss_pred ---HHHhh-CCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHH
Q 002437 521 ---TMKLL-NIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS 579 (921)
Q Consensus 521 ---~~~~~-~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~ 579 (921)
....+ .....+++++||+++ .|++++.++|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~SA~tg---------------------------~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 130 NTTGSQRIEGQRPVEVFMCSVVMR---------------------------NGYLEAFQWLSQ 165 (166)
T ss_dssp SCCC---CCSSCCEEEEEEBTTTT---------------------------BSHHHHHHHHTT
T ss_pred hhhHHHhhcccCCCEEEEeeCCCC---------------------------CCHHHHHHHHhC
Confidence 00011 123457999999998 688888888764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.1e-11 Score=119.57 Aligned_cols=137 Identities=21% Similarity=0.214 Sum_probs=85.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|..|+|||||++.+++.++.+ ..+++........ ..+|.. -.+.++|||
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~t~~~~~~~~i-------------~v~~~~---------~~l~i~Dt~ 60 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEM-------------LVDGQT---------HLVLIREEA 60 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCC--CCCSSCEEEEEEE-------------EETTEE---------EEEEEEECS
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCC--cCCccceeEEEEe-------------ecCceE---------EEEEEeecc
Confidence 4799999999999999999999887632 2233322111001 012221 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh---hh---cCCeEEEEEeCCCCCCChHH---HHHH
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT---QQ---WKKKVVFVLNKSDLYQNAFE---LEEA 513 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l---~~---~~~~vivVlNK~D~~~~~~~---~~~v 513 (921)
|... ..|++.+|++|+|+|.+++.+..... +...+ +. ...|+++|.||.|+...... .++.
T Consensus 61 g~~~---------~~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~ 131 (175)
T d2bmja1 61 GAPD---------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA 131 (175)
T ss_dssp SCCC---------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHH
T ss_pred cccc---------cccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHH
Confidence 9741 23677899999999999876655543 33333 22 33589999999887433111 1111
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecccch
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSARST 540 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA~~~ 540 (921)
.. ...+ ....+++.+||+.+
T Consensus 132 ~~----~~~~---~~~~~~~e~SAk~~ 151 (175)
T d2bmja1 132 RA----LCAD---MKRCSYYETCATYG 151 (175)
T ss_dssp HH----HHHT---STTEEEEEEBTTTT
T ss_pred HH----HHHH---hCCCeEEEeCCCCC
Confidence 11 1112 23468899999987
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=1.3e-11 Score=126.95 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=101.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC--CCCC--------CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCc
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR--YLKD--------GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPI 433 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~--~~~~--------~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 433 (921)
..+|+++|+.++|||||+.+|+-.. +.+. ........+..-...+....+.++..........+.++.
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-- 83 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-- 83 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence 4699999999999999999996311 1000 000000000000001111222334444444444444433
Q ss_pred ccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC-------CHHHHHHHHHhhhcCC-eEEEEEeCCCCCC
Q 002437 434 LKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPL-------TESEVVFLRYTQQWKK-KVVFVLNKSDLYQ 505 (921)
Q Consensus 434 l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~-------t~~e~~~l~~l~~~~~-~vivVlNK~D~~~ 505 (921)
+.++||||||..++ ..-+..-+..+|++|+|+|+..+. ..+..+.+..+...+. ++|+++||+|+..
T Consensus 84 -~~i~iiDtPGH~df----~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 84 -YQVTVIDAPGHRDF----IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK 158 (239)
T ss_dssp -EEEEEEECCCCTTH----HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGT
T ss_pred -EEEEEEECCCcHHH----HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 46999999998544 334667789999999999998541 2234455555666665 5889999999986
Q ss_pred C-hHHHHHHHHHHHHHHHHhhC-CCCCeEEEecccchH
Q 002437 506 N-AFELEEAISFVKENTMKLLN-IENVTIYPVSARSTL 541 (921)
Q Consensus 506 ~-~~~~~~v~~~~~~~~~~~~~-~~~~~v~~vSA~~~l 541 (921)
. ++..+++.+.+...+...-. ...++++++|+..+.
T Consensus 159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ 196 (239)
T d1f60a3 159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGD 196 (239)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCB
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCC
Confidence 4 33456666666655544322 234678999998873
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.19 E-value=2.1e-11 Score=125.93 Aligned_cols=169 Identities=21% Similarity=0.195 Sum_probs=90.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCC-----------C-CCCccceeEEEEccCCccchhhcccccCCCeEEeecC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKD-----------G-VVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLP 430 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~-----------~-~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 430 (921)
++..|+|+|+.++|||||+.+|+...-... . .......... ..+.......+......+...+.++
T Consensus 23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~e~~rg~ti~~~~~~~~~~ 100 (245)
T d1r5ba3 23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSW--ALDSTSEEREKGKTVEVGRAYFETE 100 (245)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEECS
T ss_pred CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhh--hhhccccccccCccccccccccccc
Confidence 356799999999999999999953210000 0 0000000000 0000011111111111121122222
Q ss_pred CCcccccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCH-------HHHHHHHHhhhcCC-eEEEEEeCCC
Q 002437 431 SPILKEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE-------SEVVFLRYTQQWKK-KVVFVLNKSD 502 (921)
Q Consensus 431 ~~~l~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~-------~e~~~l~~l~~~~~-~vivVlNK~D 502 (921)
. ..+.++||||..++ ...+...+..+|.+++|+|+..+..+ +..+.+..+...+. ++++++||+|
T Consensus 101 ~---~~i~~iDtPGH~df----~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD 173 (245)
T d1r5ba3 101 H---RRFSLLDAPGHKGY----VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 173 (245)
T ss_dssp S---EEEEECCCCC---------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred c---ceeeeecccccccc----hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCC
Confidence 1 35899999997433 33455667899999999999875322 34455555666665 5889999999
Q ss_pred CCC---ChHHHHHHHHHHHHHHHHhhCC---CCCeEEEecccch
Q 002437 503 LYQ---NAFELEEAISFVKENTMKLLNI---ENVTIYPVSARST 540 (921)
Q Consensus 503 ~~~---~~~~~~~v~~~~~~~~~~~~~~---~~~~v~~vSA~~~ 540 (921)
+.. .++.++++.+.+...+..+.+. ..++++|+||+.|
T Consensus 174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G 217 (245)
T d1r5ba3 174 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTG 217 (245)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTT
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCC
Confidence 864 3444677777777766666543 2468999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=5.6e-11 Score=119.69 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=78.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTPGT 445 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTPG~ 445 (921)
+|+++|.+|+|||||+|+|++.++.... ...+.....+.+... .+ ..+.++|+||.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~------------~~-----------~~~~~~d~~g~ 57 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNN------------RG-----------NSLTLIDLPGH 57 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSST------------TC-----------CEEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeee------------ee-----------eeeeeeecccc
Confidence 6999999999999999999988765432 111111122222110 01 24889999997
Q ss_pred ChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCH--HHHHHHHHh------hhcCCeEEEEEeCCCCCCChHHHHHHHHHH
Q 002437 446 NVILQRQQRLTEEFVPRADLVLFVISADRPLTE--SEVVFLRYT------QQWKKKVVFVLNKSDLYQNAFELEEAISFV 517 (921)
Q Consensus 446 ~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~--~e~~~l~~l------~~~~~~vivVlNK~D~~~~~~~~~~v~~~~ 517 (921)
.. .....+..++..+|.+++|+|+.+.... ...+.+..+ .....|+++|+||+|+... ...+++.+.+
T Consensus 58 ~~---~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a-~~~~~i~~~l 133 (207)
T d2fh5b1 58 ES---LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA-KSAKLIQQQL 133 (207)
T ss_dssp HH---HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC-CCHHHHHHHH
T ss_pred cc---ccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC-CCHHHHHHHH
Confidence 42 2234567788999999999999854321 111222222 1245799999999999754 2234444444
Q ss_pred HHH
Q 002437 518 KEN 520 (921)
Q Consensus 518 ~~~ 520 (921)
...
T Consensus 134 ~~e 136 (207)
T d2fh5b1 134 EKE 136 (207)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=2.9e-11 Score=129.96 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=84.6
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCC-------
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSP------- 432 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~------- 432 (921)
..+...+|+|+|+.++|||||+++|+...-......... .++.+....+.++..........++++..
T Consensus 13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~-----~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~ 87 (341)
T d1n0ua2 13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGE-----ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEI 87 (341)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHHC
T ss_pred CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCcccccccc-----ccccccchhHHhcCceEeCCEEEEEeccCcccccch
Confidence 334456799999999999999999973211111000000 11122222223333333333332222110
Q ss_pred ----cc--cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCC
Q 002437 433 ----IL--KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLY 504 (921)
Q Consensus 433 ----~l--~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~ 504 (921)
.- .-++||||||..+...+ +...++-+|.+|+|+|+..+...+....++.+...+.|+++|+||+|..
T Consensus 88 ~~~~~~~~~~inliDtPGh~dF~~e----v~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 88 KQKTDGNSFLINLIDSPGHVDFSSE----VTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 161 (341)
T ss_dssp SSCCCSSEEEEEEECCCCCCSSCHH----HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred hccccccceEEEEEcCCCcHHHHHH----HHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence 00 12899999998665544 4555677999999999999999999999999999999999999999964
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.13 E-value=7.6e-11 Score=120.25 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=67.3
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCH-------HHHHHHHHhhhcC-CeEEEEEeCCCCCCC-
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE-------SEVVFLRYTQQWK-KKVVFVLNKSDLYQN- 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~-------~e~~~l~~l~~~~-~~vivVlNK~D~~~~- 506 (921)
.++||||||..++ ...+...+.-+|.+|+|+|+..+... +..+.+..++..+ +++|+++||+|+...
T Consensus 82 ~i~iiDtPGH~df----~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 82 FFTIIDAPGHRDF----VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp EEEECCCSSSTTH----HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred eeEEeeCCCcHHH----HHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCcc
Confidence 5899999998544 34466778899999999999976322 2223333333334 468999999999753
Q ss_pred --hHHHHHHHHHHHHHHHHh-hCCCCCeEEEecccchH
Q 002437 507 --AFELEEAISFVKENTMKL-LNIENVTIYPVSARSTL 541 (921)
Q Consensus 507 --~~~~~~v~~~~~~~~~~~-~~~~~~~v~~vSA~~~l 541 (921)
...++.+...+...+... ......+++|+||..+.
T Consensus 158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~ 195 (224)
T d1jnya3 158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD 195 (224)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTB
T ss_pred ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCC
Confidence 333455555554443332 12346788999998873
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.10 E-value=2.1e-10 Score=112.39 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=97.3
Q ss_pred HHhcCCCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccc-eeEEEEccCCccchhhcccccCCCeEEeecCCCccc
Q 002437 357 AVSQIDEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTN-EITFLRFSDLASEEQQRCERHPDGQYICYLPSPILK 435 (921)
Q Consensus 357 ~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~ 435 (921)
.........+|+++|.+|+|||||+|+|.+..+... .|++. ....+.+.. .
T Consensus 6 ~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~--------------------------~ 57 (186)
T d1f6ba_ 6 FLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAG--------------------------M 57 (186)
T ss_dssp HHTCTTCCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCSCEEEEETT--------------------------E
T ss_pred hccccCCCCEEEEECCCCCCHHHHHHHHhCCCCcce--ecccccceeEEEecc--------------------------c
Confidence 344455778999999999999999999999875322 12211 111111111 1
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHH-HHHHh----hhcCCeEEEEEeCCCCCCChHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVV-FLRYT----QQWKKKVVFVLNKSDLYQNAFEL 510 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~-~l~~l----~~~~~~vivVlNK~D~~~~~~~~ 510 (921)
.+.++|++|..... .....+....+.+++++|........+.. .+... ...+.|++++.||.|+.... ..
T Consensus 58 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~-~~ 132 (186)
T d1f6ba_ 58 TFTTFDLGGHIQAR----RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI-SE 132 (186)
T ss_dssp EEEEEEECC----C----CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC-CH
T ss_pred ccccccccchhhhh----hHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC-CH
Confidence 36788898864332 23456778999999999988765444332 22221 12458999999999986542 12
Q ss_pred HHHHHHHHHHHHHh---------hCCCCCeEEEecccchHHhhcccccccccCcccccccCccccccchHHHHHHHHHhh
Q 002437 511 EEAISFVKENTMKL---------LNIENVTIYPVSARSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYSFL 581 (921)
Q Consensus 511 ~~v~~~~~~~~~~~---------~~~~~~~v~~vSA~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~~l 581 (921)
.++.+......... ......+++++||++| .|++++.++|.+.+
T Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg---------------------------~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 133 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR---------------------------QGYGEGFRWMAQYI 185 (186)
T ss_dssp HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTT---------------------------BSHHHHHHHHHTTC
T ss_pred HHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCC---------------------------CCHHHHHHHHHHhh
Confidence 22222221100000 0112357999999998 78988888887654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=2.3e-09 Score=106.59 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=88.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|..|+|||||++.+. + .....||.. +....+.... ..+.++|++
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f-~~~~~pTiG-~~~~~~~~~~------------------------~~~~~~D~~ 52 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---I-IHGQDPTKG-IHEYDFEIKN------------------------VPFKMVDVG 52 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---H-HHSCCCCSS-EEEEEEEETT------------------------EEEEEEEEC
T ss_pred eEEEEEECCCCCCHHHHHHHHh---c-CCCCCCeee-eEEEEEeeee------------------------eeeeeeccc
Confidence 4789999999999999999993 1 233445543 3322221111 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCC-----------HHHHHHHHHhh----hcCCeEEEEEeCCCCCCC--
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLT-----------ESEVVFLRYTQ----QWKKKVVFVLNKSDLYQN-- 506 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t-----------~~e~~~l~~l~----~~~~~vivVlNK~D~~~~-- 506 (921)
|. +.....+..+.+.++.+++|++..+... ......+..+. ..+.|+++|+||+|+...
T Consensus 53 gq----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~ 128 (200)
T d1zcba2 53 GQ----RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV 128 (200)
T ss_dssp C-----------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT
T ss_pred ce----eeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhc
Confidence 97 3444567788899999999999876432 12223334332 346899999999997421
Q ss_pred ---------------hHHHHHHHHHHHHHHHHhhCC---CCCeEEEecccch
Q 002437 507 ---------------AFELEEAISFVKENTMKLLNI---ENVTIYPVSARST 540 (921)
Q Consensus 507 ---------------~~~~~~v~~~~~~~~~~~~~~---~~~~v~~vSA~~~ 540 (921)
..+.+.+.+++.+.+...... ....++++||+.+
T Consensus 129 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~ 180 (200)
T d1zcba2 129 QVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT 180 (200)
T ss_dssp TTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred cccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCc
Confidence 133455666666655543221 2345667899887
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.84 E-value=1.1e-08 Score=104.80 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=44.8
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHH-----HhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLR-----YTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~-----~l~~~~~~vivVlNK~D~~~~ 506 (921)
.+.++||||......... ..... ....+.+++|+|+......+...... ...+...|.++|+||+|+...
T Consensus 96 ~~~~id~~g~~~~~~~~~-~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~ 172 (244)
T d1yrba1 96 DYVLIDTPGQMETFLFHE-FGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 172 (244)
T ss_dssp SEEEEECCSSHHHHHHSH-HHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred ceeeeccccchhHHHHHH-HHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccH
Confidence 589999999854321111 11111 23567899999998766555443221 123467899999999999964
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=4e-09 Score=104.14 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=87.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
..+|+++|..|+|||||++.|....+. |+... ........ ..+.++||.
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~~------t~~~~-~~~~~~~~------------------------~~~~i~D~~ 50 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHEA------GTGIV-ETHFTFKD------------------------LHFKMFDVG 50 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHSC------CCSEE-EEEEEETT------------------------EEEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC------CccEE-EEEEEeee------------------------eeeeeeccc
Confidence 368999999999999999999765542 22211 11111000 148899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCH-----------HHHHHHHH-hh---hcCCeEEEEEeCCCCCCC--
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLTE-----------SEVVFLRY-TQ---QWKKKVVFVLNKSDLYQN-- 506 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~-----------~e~~~l~~-l~---~~~~~vivVlNK~D~~~~-- 506 (921)
|. +.....+..++..+|++++|+|.+...+. +....+.. +. ....|+++|.||+|+...
T Consensus 51 Gq----~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~ 126 (195)
T d1svsa1 51 GQ----RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 126 (195)
T ss_dssp CS----GGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT
T ss_pred cc----cccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhc
Confidence 97 34556788899999999999997643211 11222222 22 245799999999985211
Q ss_pred --------------hHHHHHHHHHHHHHHHHhhCC---CCCeEEEecccch
Q 002437 507 --------------AFELEEAISFVKENTMKLLNI---ENVTIYPVSARST 540 (921)
Q Consensus 507 --------------~~~~~~v~~~~~~~~~~~~~~---~~~~v~~vSA~~~ 540 (921)
.....+....+...+.+.... ....++++||+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~ 177 (195)
T d1svsa1 127 KKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 177 (195)
T ss_dssp TTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred cchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECC
Confidence 122334444444444443221 2345678999987
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=1.2e-08 Score=100.93 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=90.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|..|+|||||++.+....+. ..||.. +....+.... ..+.++|++
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~~---~~pTiG-~~~~~~~~~~------------------------~~~~~~d~~ 53 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHGS---GVPTTG-IIEYPFDLQS------------------------VIFRMVDVG 53 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTSS---CCCCCS-CEEEEEECSS------------------------CEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCC---CCceee-EEEEEEeccc------------------------eeeeecccc
Confidence 478999999999999999999876542 345543 2221111100 147899999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCC-----------HHHHHHHH-Hhh---hcCCeEEEEEeCCCCCCC--
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPLT-----------ESEVVFLR-YTQ---QWKKKVVFVLNKSDLYQN-- 506 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t-----------~~e~~~l~-~l~---~~~~~vivVlNK~D~~~~-- 506 (921)
|.. .....+..++..++.+++|+|.+.... .+....+. .+. ..+.|+++|.||.|+...
T Consensus 54 g~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~ 129 (200)
T d2bcjq2 54 GQR----SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKI 129 (200)
T ss_dssp CST----TGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHT
T ss_pred ccc----cccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcc
Confidence 974 334557788999999999999875421 12223333 332 245799999999986421
Q ss_pred ---------------hHHHHHHHHHHHHHHHHhhCC--CCCeEEEecccch
Q 002437 507 ---------------AFELEEAISFVKENTMKLLNI--ENVTIYPVSARST 540 (921)
Q Consensus 507 ---------------~~~~~~v~~~~~~~~~~~~~~--~~~~v~~vSA~~~ 540 (921)
..+.......+...+...... ....+|++||+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~ 180 (200)
T d2bcjq2 130 MYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 180 (200)
T ss_dssp TTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCH
T ss_pred cchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcC
Confidence 112333444444444433222 2345678899988
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.72 E-value=3.8e-09 Score=113.51 Aligned_cols=107 Identities=21% Similarity=0.117 Sum_probs=44.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEc---cCCccchhhcccccCCCeEEeecCCCcccccEEEe
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRF---SDLASEEQQRCERHPDGQYICYLPSPILKEMIIVD 441 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvD 441 (921)
+.|+++|.||+|||||+|+|+|.+....++.+||-.+..... .+...... ..........+.. ......+.++|
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~i~~~D 77 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKEL--GCSPNPQNYEYRN-GLALIPVKMVD 77 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSS--CCSCCCSSSCEET-TEEEEEEEEEE
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhh--hhccCcccccccc-ccccccEEEEE
Confidence 479999999999999999999998777778888865433211 00000000 0000000000000 00002489999
Q ss_pred CCCCChhhhHHHHHHHHh---cCCCCEEEEEEeCCC
Q 002437 442 TPGTNVILQRQQRLTEEF---VPRADLVLFVISADR 474 (921)
Q Consensus 442 TPG~~~~~~~~~~~~~~~---l~~aD~il~V~da~~ 474 (921)
+||+.....+...+...+ ++++|++++|+|+..
T Consensus 78 ~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTC
T ss_pred CCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 999843322222333333 479999999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.57 E-value=2.1e-08 Score=106.18 Aligned_cols=108 Identities=16% Similarity=0.033 Sum_probs=67.4
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCCCC-CCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccE
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGKRY-LKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMI 438 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~~~-~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~ 438 (921)
+....++|+++|.||+|||||+|+|++... .+.++..||-.+........+......+.......++ + ..+.
T Consensus 6 ~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~-~------~~i~ 78 (296)
T d1ni3a1 6 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV-P------AFLT 78 (296)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEE-C------EEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCcee-c------ccce
Confidence 445678999999999999999999998765 4677888887654432211111111111111111111 1 1488
Q ss_pred EEeCCCCChhh---hHHHHHHHHhcCCCCEEEEEEeCCC
Q 002437 439 IVDTPGTNVIL---QRQQRLTEEFVPRADLVLFVISADR 474 (921)
Q Consensus 439 lvDTPG~~~~~---~~~~~~~~~~l~~aD~il~V~da~~ 474 (921)
++|.||+-... ..........+++||++++|+|+..
T Consensus 79 ~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 79 VFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp EECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred eeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 99999983211 1112346677799999999999864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.52 E-value=9.9e-08 Score=96.43 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|..|+|||||++.|...++ .||+. +....+.-. + ..+.++|+.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~-----~pTiG-~~~~~~~~~-------------~-----------~~~~~~D~~ 55 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV-----VLTSG-IFETKFQVD-------------K-----------VNFHMFDVG 55 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC-----CCCCS-CEEEEEEET-------------T-----------EEEEEEECC
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc-----CCCCC-eEEEEEEEC-------------c-----------EEEEEEecC
Confidence 58999999999999999999864443 24443 222221110 1 148999999
Q ss_pred CCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCC---------C--HHHHHHHHHhhh----cCCeEEEEEeCCCCC
Q 002437 444 GTNVILQRQQRLTEEFVPRADLVLFVISADRPL---------T--ESEVVFLRYTQQ----WKKKVVFVLNKSDLY 504 (921)
Q Consensus 444 G~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~---------t--~~e~~~l~~l~~----~~~~vivVlNK~D~~ 504 (921)
|.. .....+..+...+++++||+|.+... . .+....+..+.. .+.|+++++||+|+.
T Consensus 56 Gq~----~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 56 GQR----DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp CST----TTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred ccc----eeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence 974 33445778889999999999986421 1 122233443322 357999999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.51 E-value=2.4e-08 Score=104.80 Aligned_cols=103 Identities=20% Similarity=0.068 Sum_probs=59.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEEeCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIVDTP 443 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lvDTP 443 (921)
.++|+++|.||+|||||+|+|++.+....++.+||-.+........+..............++ | -.+.++|.|
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~---~----a~i~~~Di~ 74 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL---P----TTMEFVDIA 74 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEE---C----CEEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCcee---e----eeEEEEEcc
Confidence 478999999999999999999998876677788886654432211111100000000000110 1 147899999
Q ss_pred CCChhhhHH---HHHHHHhcCCCCEEEEEEeCC
Q 002437 444 GTNVILQRQ---QRLTEEFVPRADLVLFVISAD 473 (921)
Q Consensus 444 G~~~~~~~~---~~~~~~~l~~aD~il~V~da~ 473 (921)
|+-....+. .....+.+++||++++|+|+.
T Consensus 75 GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 75 GLVAGASKGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp SCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred ccCCCcccCCCccHHHHHHHHhccceEEEeecc
Confidence 984221111 112456679999999999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.44 E-value=1.3e-07 Score=98.78 Aligned_cols=58 Identities=34% Similarity=0.498 Sum_probs=38.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCc-cceeEEEEccCCccchhhcccccCCCeEEeecCCCcccccEEE
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPT-TNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKEMIIV 440 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~t-T~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~l~lv 440 (921)
....+|+|+|.||+|||||||+|.|.+...++..|. |.....+..+ +++.++
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~---------------------------~~~~l~ 162 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG---------------------------KELELL 162 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET---------------------------TTEEEE
T ss_pred CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECC---------------------------CCeEEe
Confidence 457899999999999999999999999887777663 4333222211 369999
Q ss_pred eCCCCC
Q 002437 441 DTPGTN 446 (921)
Q Consensus 441 DTPG~~ 446 (921)
||||+-
T Consensus 163 DTPGi~ 168 (273)
T d1puja_ 163 DTPGIL 168 (273)
T ss_dssp ECCCCC
T ss_pred cCCCcc
Confidence 999984
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=6.6e-07 Score=89.20 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=23.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKDG 393 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~~ 393 (921)
.+.+|+|.+|+|||||||+|++.....++
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~ 124 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVS 124 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhcc
Confidence 47789999999999999999998665543
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.07 E-value=1.4e-05 Score=80.51 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=98.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCceEE-------------ec---CcHHHHHhCCCCeEE
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRALFL-------------IA---ERVDIAAAVNASGVL 163 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~i-------------vn---d~~dla~~~~a~GvH 163 (921)
...+...++..+|...+.+... +....++..+.. +++ +. .+...+...|+|.+.
T Consensus 34 ~v~~~A~a~~~~Ga~~i~~~~~--------~~~~~ir~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~ 103 (230)
T d1yxya1 34 IMPLMAKAAQEAGAVGIRANSV--------RDIKEIQAITDL--PIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIA 103 (230)
T ss_dssp SHHHHHHHHHHHTCSEEEEESH--------HHHHHHHTTCCS--CEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHHHCCCeEEEecCh--------hhHHHHHhhhhc--chhhhhcccCCcceeeechhHHHHHHHHhcCCCEEE
Confidence 3345667777899999988431 123344444432 111 11 234555667888877
Q ss_pred cCCCCCC------H-HHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCC--CC-Ccc--hhh
Q 002437 164 LSDQGLP------A-IVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQ--KA-DVI--ENS 229 (921)
Q Consensus 164 L~~~~l~------~-~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~--~~-g~~--~~~ 229 (921)
+.....+ . ...+...... +. .++...+|+.+++..| .+.|+||+.++.. +.. .. ... ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~v~~~v~t~~~a~~a-~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~ 177 (230)
T d1yxya1 104 MDCTKRDRHDGLDIASFIRQVKEKY-PN----QLLMADISTFDEGLVA-HQAGIDFVGTTLSGYTPYSRQEAGPDVALIE 177 (230)
T ss_dssp EECCSSCCTTCCCHHHHHHHHHHHC-TT----CEEEEECSSHHHHHHH-HHTTCSEEECTTTTSSTTSCCSSSCCHHHHH
T ss_pred EecccccccchhhHHHHHHHHHhcC-CC----ceEecCCCCHHHHHHH-HhcCCCEEEeecccccccccccchHHHHHHH
Confidence 6543322 1 2222211000 23 2678899999999999 8999999998876 111 11 111 345
Q ss_pred hhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 230 LFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 230 ~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
.....++||+|-||| +++++.+++++||+||.|-+|..+
T Consensus 178 ~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~~ 217 (230)
T d1yxya1 178 ALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR 217 (230)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred HHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence 556789999999999 799999999999999999888765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.90 E-value=1.6e-06 Score=86.62 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCCCCCCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGKRYLKD 392 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~~~~~~ 392 (921)
.+.+|+|.+|+|||||||+|++...+.+
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t 125 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPELGLRT 125 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC------
T ss_pred ceEEEECCCCccHHHHHHhhccHhHhhh
Confidence 4567999999999999999999865543
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=97.65 E-value=1.1e-05 Score=80.74 Aligned_cols=149 Identities=11% Similarity=0.010 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcC-----------ceEEecCcHHH---HHhCCCCeEEcCCC-
Q 002437 103 DLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR-----------ALFLIAERVDI---AAAVNASGVLLSDQ- 167 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~-----------~~~ivnd~~dl---a~~~~a~GvHL~~~- 167 (921)
+..+++..+|...+.+... +..+.+++.+..- ....+..+... +...|+|.|=+...
T Consensus 27 ~~A~aa~~~Ga~~i~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agad~v~~~~~~ 98 (222)
T d1y0ea_ 27 KMALAAYEGGAVGIRANTK--------EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATL 98 (222)
T ss_dssp HHHHHHHHHTCSEEEEESH--------HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSC
T ss_pred HHHHHHHHCCCeEEecCCH--------HHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcCCCEEEeeccc
Confidence 4466666789998888532 2334555554321 12333333333 33358887744221
Q ss_pred ----CCCHH----HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCC--CCC-----cc-hhh
Q 002437 168 ----GLPAI----VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQ--KAD-----VI-ENS 229 (921)
Q Consensus 168 ----~l~~~----~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~--~~g-----~~-~~~ 229 (921)
..... .++... .. .++..++++.+++..+ .+.|+||+.+++. +.. ... +. ..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~----~~----~~v~~~~~t~~~a~~~-~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 169 (222)
T d1y0ea_ 99 QQRPKETLDELVSYIRTHA----PN----VEIMADIATVEEAKNA-ARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKD 169 (222)
T ss_dssp SCCSSSCHHHHHHHHHHHC----TT----SEEEEECSSHHHHHHH-HHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhC----Cc----eEEeecCCCHHHHHHH-HHcCCCeEEEeccCCcccccCccchhhHHHHHHH
Confidence 11111 223322 23 2688899999999999 8999999999876 221 111 12 367
Q ss_pred hhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccc
Q 002437 230 LFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 230 ~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
+.+..++||++-||| +++++.+++++||+||.+-+|..+
T Consensus 170 ~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 170 VLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp HHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred HHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 778899999999999 689999999999999999888765
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=9.7e-05 Score=73.76 Aligned_cols=154 Identities=14% Similarity=0.203 Sum_probs=78.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCCCCCCCCCCccceeEEEE--ccCCcc------chhhcccccCCCeEEeecCCCc-
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKRYLKDGVVPTTNEITFLR--FSDLAS------EEQQRCERHPDGQYICYLPSPI- 433 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~~~~~~~~~tT~~~~~~~--~~~~~~------~~~~~~~~~~~g~~~~~~p~~~- 433 (921)
+.|...|.|.-|||||||+|.|+...- +. .+.++. ++..+. ...........|++-+.....+
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~---~~-----riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~ 73 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQH---GY-----KIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELE 73 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCC---CC-----CEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHH
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhcCC---CC-----cEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHH
Confidence 457888999999999999999986421 11 011110 111000 0001112234555444322211
Q ss_pred ---------------ccccEEEeCCCCChhhhHHHHHH----HHhcCCCCEEEEEEeCCCCCCHHHH-H-HHHHhhhcCC
Q 002437 434 ---------------LKEMIIVDTPGTNVILQRQQRLT----EEFVPRADLVLFVISADRPLTESEV-V-FLRYTQQWKK 492 (921)
Q Consensus 434 ---------------l~~l~lvDTPG~~~~~~~~~~~~----~~~l~~aD~il~V~da~~~~t~~e~-~-~l~~l~~~~~ 492 (921)
-.+..+|.|.|.....+-..... ....-..|.++.|+|+......... . +..++. .
T Consensus 74 ~~l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~---~ 150 (222)
T d1nija1 74 DALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---Y 150 (222)
T ss_dssp HHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHH---T
T ss_pred HHHHHHHHHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHH---h
Confidence 12568999999864433222111 1122346889999999754211111 1 222332 2
Q ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEec
Q 002437 493 KVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVS 536 (921)
Q Consensus 493 ~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vS 536 (921)
-=++|+||+|+.++. +.+.+ .++.+ . +..+|+.+|
T Consensus 151 AD~ivlNK~Dl~~~~---~~~~~----~l~~l-N-P~a~Ii~~~ 185 (222)
T d1nija1 151 ADRILLTKTDVAGEA---EKLHE----RLARI-N-ARAPVYTVT 185 (222)
T ss_dssp CSEEEEECTTTCSCT---HHHHH----HHHHH-C-SSSCEEECC
T ss_pred CCcccccccccccHH---HHHHH----HHHHH-h-CCCeEEEee
Confidence 346889999998643 23333 33332 3 345777655
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.63 E-value=5.8e-05 Score=73.62 Aligned_cols=165 Identities=13% Similarity=0.040 Sum_probs=107.0
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcCc-----eEEecCcHHHHHhCCCCeEEcCCCCCCHHH
Q 002437 99 GDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDRA-----LFLIAERVDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 99 ~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~-----~~ivnd~~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
++....++.++++|++++.+--..-.. .+..++++..-..+. .++=.+..+.|.+.||+=+ -+-.+....
T Consensus 21 ~~a~~~~~al~~~Gi~~iEitlr~p~a---~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fi--vsP~~~~~v 95 (202)
T d1wa3a1 21 EEAKEKALAVFEGGVHLIEITFTVPDA---DTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI--VSPHLDEEI 95 (202)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTSTTH---HHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE--ECSSCCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCccH---HHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEE--eCCCCcHHH
Confidence 477888999999999999864433222 333334433221122 2233456777888888722 222334333
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEEcCCCccChHH
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIMNASPLVDVSK 251 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~aiGGi~~~~~~~ 251 (921)
.+.... .+ ++.+-|+ -|+.|+..| .+.|+|++=+-|.. ..|.. .+.+.... ++|+++.|||+.+|+.+
T Consensus 96 ~~~~~~---~~--i~~iPGv--~TpsEi~~A-~~~G~~~lK~fPa~--~~G~~~lk~l~~p~p~i~~iptGGI~~~n~~~ 165 (202)
T d1wa3a1 96 SQFCKE---KG--VFYMPGV--MTPTELVKA-MKLGHTILKLFPGE--VVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCE 165 (202)
T ss_dssp HHHHHH---HT--CEEECEE--CSHHHHHHH-HHTTCCEEEETTHH--HHHHHHHHHHHTTCTTCEEEEBSSCCTTTHHH
T ss_pred HHHHHh---cC--CceeCCc--CcHHHHHHH-HHCCCCEEEecchh--hcCHHHHHHHhCcccCCcEEeeCCCCHHHHHH
Confidence 333321 11 1113354 599999999 89999999998861 11222 34454444 59999999999999999
Q ss_pred HHHcCCcEEEEeecccccchHHHHHhh
Q 002437 252 FLKSGASGFVISLEDLSLFNDGVLSQM 278 (921)
Q Consensus 252 ~~~~Ga~gva~~~a~~~~~~~~~~~~~ 278 (921)
.+++|+.+|++.++..+.-|+.+.++.
T Consensus 166 ~l~aga~avg~Gs~l~~~~~~~i~~~a 192 (202)
T d1wa3a1 166 WFKAGVLAVGVGSALVKGTPDEVREKA 192 (202)
T ss_dssp HHHHTCSCEEECHHHHCSCHHHHHHHH
T ss_pred HHHCCCeEEEEchhhcCCCHHHHHHHH
Confidence 999999999998888877677766654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.40 E-value=0.00017 Score=74.42 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 002437 454 RLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIY 533 (921)
Q Consensus 454 ~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~ 533 (921)
..+.+.+..+|+||+|+|+..|++..+..+.+.++ ++|+|+|+||+|+.+. +..+.+.+ .+ ......++
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~-~~~~~w~~----~f----~~~~~~~i 75 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA-AVTQQWKE----HF----ENQGIRSL 75 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH-HHHHHHHH----HH----HTTTCCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCch-HHHHHHHH----HH----HhcCCccc
Confidence 45677899999999999999999877776666664 6899999999999854 22222222 22 22346788
Q ss_pred Eecccch
Q 002437 534 PVSARST 540 (921)
Q Consensus 534 ~vSA~~~ 540 (921)
++|+..+
T Consensus 76 ~isa~~~ 82 (273)
T d1puja_ 76 SINSVNG 82 (273)
T ss_dssp ECCTTTC
T ss_pred eeecccC
Confidence 9999775
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00049 Score=70.67 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=57.7
Q ss_pred CCCC-eEEEEEeCCCCCHHHHHHHHHCCCC-CCC--CCCCccceeEEEEccCCccchhhcccccCCCeEEeecCCCcccc
Q 002437 361 IDEP-FLLVIVGEYNSGKSSVINALLGKRY-LKD--GVVPTTNEITFLRFSDLASEEQQRCERHPDGQYICYLPSPILKE 436 (921)
Q Consensus 361 ~~~~-~~I~vvG~~~aGKSTLiNaLlg~~~-~~~--~~~~tT~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~ 436 (921)
++.+ ..|+|+|++++|||+|+|.|+|... .+. +..++|..+-....... ++. -..
T Consensus 28 ~~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~------------~~~---------~~~ 86 (277)
T d1f5na2 28 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP------------KKP---------GHI 86 (277)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS------------SST---------TCE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc------------CCC---------Cce
Confidence 3444 4899999999999999999998753 222 23456665433221110 110 024
Q ss_pred cEEEeCCCCChhhh---HHH-HHHHHhcCCCCEEEEEEeCCCCCCHHHHHH
Q 002437 437 MIIVDTPGTNVILQ---RQQ-RLTEEFVPRADLVLFVISADRPLTESEVVF 483 (921)
Q Consensus 437 l~lvDTPG~~~~~~---~~~-~~~~~~l~~aD~il~V~da~~~~t~~e~~~ 483 (921)
+.++||.|+++... .+. .+..=.+--++++||-+... ..+.+.+.
T Consensus 87 ~~~lDteG~~~~~~~~~~~~~~i~~l~~llSs~~i~N~~~~--~~~~~l~~ 135 (277)
T d1f5na2 87 LVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGT--INQQAMDQ 135 (277)
T ss_dssp EEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESC--SSHHHHHT
T ss_pred EEEEecccccccccccchhHHHHHHHHHHHhCEEEEecccc--CcHHHHHH
Confidence 89999999975431 122 22222234577777766543 44555543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00062 Score=66.61 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=49.1
Q ss_pred ccEEEeCCCCChhhhHHHHHH---HHhcC-----CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh
Q 002437 436 EMIIVDTPGTNVILQRQQRLT---EEFVP-----RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA 507 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~---~~~l~-----~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~ 507 (921)
+++||||||-+.......+.. .+.+. ..+-+++|+|+... ..+........+.-..-=+++||.|.....
T Consensus 93 d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~~~~lIlTKlDe~~~~ 170 (211)
T d2qy9a2 93 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLTKLDGTAKG 170 (211)
T ss_dssp SEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHSCCCEEEEECCTTCTTT
T ss_pred CEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhccCCceEEEeecCCCCCc
Confidence 689999999754433322222 22333 24689999999844 333332222222223455789999986553
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 508 FELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
- .+...... ...||.+++.
T Consensus 171 G---~~l~~~~~--------~~~Pi~~i~~ 189 (211)
T d2qy9a2 171 G---VIFSVADQ--------FGIPIRYIGV 189 (211)
T ss_dssp T---HHHHHHHH--------HCCCEEEEEC
T ss_pred c---HHHHHHHH--------HCCCEEEEeC
Confidence 2 22222221 2478888875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.16 E-value=0.00076 Score=65.96 Aligned_cols=89 Identities=24% Similarity=0.179 Sum_probs=50.0
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
+++||||||.+............+ ....|-+++|+|+..+ ...........+.-..-=++++|.|..... -.+
T Consensus 94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~~~~~I~TKlDe~~~~---G~~ 168 (207)
T d1ls1a2 94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTGLVLTKLDGDARG---GAA 168 (207)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCEEEEECGGGCSSC---HHH
T ss_pred cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccc--hhHHHHHHHHHhhCCCCeeEEeecCccccc---hHH
Confidence 689999999864433332223333 2467899999998754 333333332222122334789999976542 222
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecc
Q 002437 514 ISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
...... ...||.+++.
T Consensus 169 l~~~~~--------~~~Pi~~i~~ 184 (207)
T d1ls1a2 169 LSARHV--------TGKPIYFAGV 184 (207)
T ss_dssp HHHHHH--------HCCCEEEEC-
T ss_pred HHHHHH--------HCCCEEEEeC
Confidence 222221 1467888764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.09 E-value=0.00023 Score=70.03 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=48.6
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh---cC-----CCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCCh
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF---VP-----RADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNA 507 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~---l~-----~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~ 507 (921)
+++||||||.+............+ +. ..+-+++|+|+... ..+..-...-...-..-=++++|.|.....
T Consensus 95 d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~~~~lI~TKlDe~~~~ 172 (213)
T d1vmaa2 95 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKLDGTAKG 172 (213)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECGGGCSCT
T ss_pred CEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccccCCceEEEecccCCCcc
Confidence 689999999764433332222222 22 25779999998743 333322222212223455789999986543
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 508 FELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
- .+...... ...||.+++.
T Consensus 173 G---~~l~~~~~--------~~~Pi~~i~~ 191 (213)
T d1vmaa2 173 G---ITLAIARE--------LGIPIKFIGV 191 (213)
T ss_dssp T---HHHHHHHH--------HCCCEEEEEC
T ss_pred c---HHHHHHHH--------HCCCEEEEeC
Confidence 2 22222221 2477888875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.06 E-value=0.00066 Score=66.53 Aligned_cols=89 Identities=24% Similarity=0.194 Sum_probs=47.5
Q ss_pred ccEEEeCCCCChhhh--HHHHHHHHh--cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHH
Q 002437 436 EMIIVDTPGTNVILQ--RQQRLTEEF--VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELE 511 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~--~~~~~~~~~--l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~ 511 (921)
+++||||||.+...+ ........+ .-..+-+++|+++....... ..+.......+. -=+++||.|..... -
T Consensus 96 d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~~~~~~~~-~~lI~TKlDet~~~---G 170 (211)
T d1j8yf2 96 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY-DLASKFNQASKI-GTIIITKMDGTAKG---G 170 (211)
T ss_dssp SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH-HHHHHHHHHCTT-EEEEEECTTSCSCH---H
T ss_pred ceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchH-HHHhhhhcccCc-ceEEEecccCCCcc---c
Confidence 699999999753321 111111111 12467899999988543221 222222223333 34679999987653 2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 512 EAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 512 ~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
.+..... ....||.+++.
T Consensus 171 ~~l~~~~--------~~~lPi~~it~ 188 (211)
T d1j8yf2 171 GALSAVA--------ATGATIKFIGT 188 (211)
T ss_dssp HHHHHHH--------TTTCCEEEEEC
T ss_pred HHHHHHH--------HHCcCEEEEeC
Confidence 2222221 23578888775
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.04 E-value=0.00039 Score=68.02 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=39.8
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHh---c-----CCCCEEEEEEeCCCCCCHHHHH-HHHHhhhcCCeEEEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEF---V-----PRADLVLFVISADRPLTESEVV-FLRYTQQWKKKVVFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~---l-----~~aD~il~V~da~~~~t~~e~~-~l~~l~~~~~~vivVlNK~D~~~~ 506 (921)
+++||||||.+.......+...++ + ...+-+++|+|+.... .+.. ........ .+-=+++||.|....
T Consensus 90 d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~-~~~~lI~TKlDet~~ 166 (207)
T d1okkd2 90 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV-GLTGVIVTKLDGTAK 166 (207)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH-CCSEEEEECTTSSCC
T ss_pred CEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhcc-CCceEEEeccCCCCC
Confidence 689999999864433322222222 2 3567899999998653 3322 22222222 233568999998755
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.88 E-value=0.0014 Score=64.44 Aligned_cols=103 Identities=23% Similarity=0.337 Sum_probs=68.7
Q ss_pred cCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 460 VPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 460 l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+.+.|.+++|+++.+|. ...-. ++|-.+...+.+.++|+||+|+..+ ++.+.+...... +. ...+++++|+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~-~~~~~~~~~~~~-----~~-~~~~v~~vSa 80 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE-DDLRKVRELEEI-----YS-GLYPIVKTSA 80 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH-HHHHHHHHHHHH-----HT-TTSCEEECCT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCH-HHHHHHHHhhcc-----cc-cceeEEEecc
Confidence 46789999999988764 33333 3666677889999999999999853 443333332221 11 2367999999
Q ss_pred cchHHhhcccccccccCcccccccCccccccchHHHHHHHHH---hhccCCccchHHHHHhh
Q 002437 538 RSTLEAKLSVSSAVGKDHSELSVNDSHWRINTFDKLEKLLYS---FLDGSSSTGKERMRLKL 596 (921)
Q Consensus 538 ~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~sg~~~L~~~l~~---~l~~~~~~~~e~~~~kl 596 (921)
+.+ .|++.|.+.+.. .+.+.+..+++.+-..|
T Consensus 81 ~~~---------------------------~g~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L 115 (225)
T d1u0la2 81 KTG---------------------------MGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 115 (225)
T ss_dssp TTC---------------------------TTHHHHHHHHSSSEEEEECSTTSSHHHHHHHH
T ss_pred ccc---------------------------hhHhhHHHHhcCCeEEEECCCCCCHHHHHHhh
Confidence 886 678888887744 35555566655555544
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.0014 Score=64.86 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=51.7
Q ss_pred cCCCCEEEEEEeCCCCC-CHHHH-HHHHHhhhcCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHhhCCCCCeEEEecc
Q 002437 460 VPRADLVLFVISADRPL-TESEV-VFLRYTQQWKKKVVFVLNKSDLYQNAFELEEAISFVKENTMKLLNIENVTIYPVSA 537 (921)
Q Consensus 460 l~~aD~il~V~da~~~~-t~~e~-~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~vSA 537 (921)
+.+.|.+++|+++.+|. ...-. ++|-.....+.+.++|+||+|+..+. +.++....+.+....+ ..+|+.+|+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~-~~~~~~~~~~~~y~~~----g~~v~~~Sa 82 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ-DTEDTIQAYAEDYRNI----GYDVYLTSS 82 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH-HHHHHHHHHHHHHHHH----TCCEEECCH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccH-HHHHHHHHHHHHHhhc----cccceeeec
Confidence 46789999999987653 33333 36666677889999999999999763 3333333333322222 478999999
Q ss_pred cch
Q 002437 538 RST 540 (921)
Q Consensus 538 ~~~ 540 (921)
+.+
T Consensus 83 ~~~ 85 (231)
T d1t9ha2 83 KDQ 85 (231)
T ss_dssp HHH
T ss_pred CCh
Confidence 876
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.11 E-value=0.012 Score=56.97 Aligned_cols=165 Identities=17% Similarity=0.051 Sum_probs=102.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGV 162 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~Gv 162 (921)
++..|.... +.++....++.+.++|++.+-+--.+-. ..+.++.+++-... |+ .++=-+.++-|...||+=+
T Consensus 15 ~iipvlr~~-~~~~~~~~~~al~~~Gi~~iEitl~~~~---a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fi 90 (212)
T d1vhca_ 15 KIVPVIALD-NADDILPLADTLAKNGLSVAEITFRSEA---AADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFV 90 (212)
T ss_dssp CEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEETTSTT---HHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCC-CHHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEE
Confidence 344444432 2347778888888999999888654333 33444555443322 22 2333457778888888633
Q ss_pred EcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCC-Ccc-hhhhhhcC-CCCEE
Q 002437 163 LLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKA-DVI-ENSLFTNV-KIPIF 239 (921)
Q Consensus 163 HL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~-g~~-~~~~~~~~-~~Pv~ 239 (921)
--+. +.....+.... .+ ++.+=|+. ++.|+..| .+.|+|++=+=|.. .. |+. .+.+..-. ++|++
T Consensus 91 vSP~--~~~~v~~~a~~---~~--i~~iPGv~--TpsEi~~A-~~~G~~~vK~FPA~--~~gG~~~lkal~~p~p~~~~~ 158 (212)
T d1vhca_ 91 VTPG--LNPKIVKLCQD---LN--FPITPGVN--NPMAIEIA-LEMGISAVKFFPAE--ASGGVKMIKALLGPYAQLQIM 158 (212)
T ss_dssp ECSS--CCHHHHHHHHH---TT--CCEECEEC--SHHHHHHH-HHTTCCEEEETTTT--TTTHHHHHHHHHTTTTTCEEE
T ss_pred ECCC--CCHHHHHHHHh---cC--CCccCCcC--CHHHHHHH-HHCCCCEEEEcccc--ccchHHHHHHHhccccCCeEE
Confidence 3332 23233332221 11 11133554 89999999 89999999887762 12 232 34454443 58999
Q ss_pred EEcCCCccChHHHHHcCCcEEEEeeccc
Q 002437 240 IMNASPLVDVSKFLKSGASGFVISLEDL 267 (921)
Q Consensus 240 aiGGi~~~~~~~~~~~Ga~gva~~~a~~ 267 (921)
+.|||+.+|+.+-+++|+-.+++.++..
T Consensus 159 ptGGV~~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 159 PTGGIGLHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp EBSSCCTTTHHHHHTSTTBCCEEECGGG
T ss_pred ecCCCCHHHHHHHHhCCCEEEEEChhhC
Confidence 9999999999999999988776655554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.10 E-value=0.0015 Score=63.62 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=30.7
Q ss_pred cCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCC
Q 002437 460 VPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSD 502 (921)
Q Consensus 460 l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D 502 (921)
+...+..++++|+..+.......+.+.++..+.+++++.++++
T Consensus 81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T d1bifa1 81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 123 (213)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence 3444556678899877655555566666778889999988876
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.95 E-value=0.0053 Score=60.88 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=82.0
Q ss_pred CceEEecCc------HHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe
Q 002437 142 RALFLIAER------VDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC 215 (921)
Q Consensus 142 ~~~~ivnd~------~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~ 215 (921)
..++|-.|. ++-|...|||+|-|-..-++......+......-+. -+=+-|||.+|+.+| ...|++.|++
T Consensus 103 ~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl---~~LvEvh~~~El~~a-~~~~a~iIGI 178 (247)
T d1a53a_ 103 SIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGM---EPLIEINDENDLDIA-LRIGARFIGI 178 (247)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTC---CCEEEECSHHHHHHH-HHTTCSEEEE
T ss_pred ccceeecccccChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhh---hHHhhcCCHHHHHHH-HhCCCCeEee
Confidence 456665552 456667899999997777765444333210000001 123578999999999 8999999998
Q ss_pred CCC--CCCCCCcc-hhhhhhcC--CCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 216 CFG--EGQKADVI-ENSLFTNV--KIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 216 gpv--Tk~~~g~~-~~~~~~~~--~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
-.- ..-...+. ...+...+ +.++++-+||+ ++++..+.++|++||.|-.+.|+.
T Consensus 179 NnRnL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~ 238 (247)
T d1a53a_ 179 NSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN 238 (247)
T ss_dssp ESBCTTTCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred eccChhhhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCC
Confidence 654 11122222 23333333 67899999995 778999999999999887777764
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.015 Score=56.28 Aligned_cols=156 Identities=9% Similarity=0.006 Sum_probs=99.2
Q ss_pred CCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEEcCCCCCCHHH
Q 002437 98 GGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 98 ~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvHL~~~~l~~~~ 173 (921)
.++....++.++++|++.+-+--.+-. ..+..+.+++-... |+ .++=-+..+.|.+.||+=+--+.- ....
T Consensus 26 ~~~a~~~~~al~~~Gi~~iEitl~tp~---a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~--~~~v 100 (213)
T d1wbha1 26 LEHAVPMAKALVAGGVRVLNVTLRTEC---AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGL--TEPL 100 (213)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEESCSTT---HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSC--CHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCCC--CHHH
Confidence 347789999999999999888654322 33444444443222 22 233345777888888864333332 2333
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCC-cc-hhhhhhc-CCCCEEEEcCCCccChH
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKAD-VI-ENSLFTN-VKIPIFIMNASPLVDVS 250 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g-~~-~~~~~~~-~~~Pv~aiGGi~~~~~~ 250 (921)
.+.... .+ ++.+=|+ -++.|+..| .+.|+|++=+=|. ...| .. .+.+..- -++|+++.|||+++|+.
T Consensus 101 ~~~a~~---~~--i~~iPGv--~TpsEi~~A-~~~G~~~vKlFPA--~~~Gg~~~lkal~~p~p~~~~~ptGGV~~~n~~ 170 (213)
T d1wbha1 101 LKAATE---GT--IPLIPGI--STVSELMLG-MDYGLKEFKFFPA--EANGGVKALQAIAGPFSQVRFCPTGGISPANYR 170 (213)
T ss_dssp HHHHHH---SS--SCEEEEE--SSHHHHHHH-HHTTCCEEEETTT--TTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHH
T ss_pred HHHHHh---cC--CCccCCc--CCHHHHHHH-HHCCCCEEEeccc--hhcChHHHHHHhcCcccCCceeeeCCCCHHHHH
Confidence 333221 11 1113355 489999999 8999999988776 2222 22 3444443 36889999999999999
Q ss_pred HHHHcCCcEEEEeecccc
Q 002437 251 KFLKSGASGFVISLEDLS 268 (921)
Q Consensus 251 ~~~~~Ga~gva~~~a~~~ 268 (921)
+-+++|+.++++.+...+
T Consensus 171 ~yl~~g~v~~~~Gs~l~~ 188 (213)
T d1wbha1 171 DYLALKSVLCIGGSWLVP 188 (213)
T ss_dssp HHHTSTTBSCEEEGGGSC
T ss_pred HHHhCCCEEEEEChhhCC
Confidence 999999988876665544
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0068 Score=56.91 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=43.6
Q ss_pred cccEEEeCCCCChhh-hHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEEEEEeCCCCCCChHHHHHH
Q 002437 435 KEMIIVDTPGTNVIL-QRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVVFVLNKSDLYQNAFELEEA 513 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~-~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vivVlNK~D~~~~~~~~~~v 513 (921)
..+.++|..|..... ..........+...+.++++...... .....+++.++....-.++.+++.|. +....++
T Consensus 106 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lt~~~R---d~~~~~I 180 (189)
T d2i3ba1 106 QRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPK--GKPLALVEEIRNRKDVKVFNVTKENR---NHLLPDI 180 (189)
T ss_dssp CCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCC--SSCCTTHHHHHTTCCSEEEECCSSSG---GGHHHHH
T ss_pred CCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCC--cchHHHHHHHhCCCCCeEEEEChhHh---hHHHHHH
Confidence 457889988864332 22334445555667777666543321 12234456666666666778888774 2334555
Q ss_pred HHHH
Q 002437 514 ISFV 517 (921)
Q Consensus 514 ~~~~ 517 (921)
.+.+
T Consensus 181 l~~~ 184 (189)
T d2i3ba1 181 VTCV 184 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=95.26 E-value=0.058 Score=53.88 Aligned_cols=160 Identities=15% Similarity=0.076 Sum_probs=105.8
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCC--C
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGL--P 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l--~ 170 (921)
+.++.++..-+.|++.+++=+-+............+..+|.. ..++.+-. .++-+...||+-|.+|..-+ |
T Consensus 31 dP~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~ 110 (253)
T d1thfd_ 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENP 110 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhhCh
Confidence 566777777789999888866444333333445566677766 77877743 34456678999999986433 1
Q ss_pred --HHHHHHhcccCCCCccccCeEEEe-----------cC--------CH-HHHHcccccCCCCEEEeCCC----CCCCCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVGRN-----------VQ--------TL-DAAFNASSSEGADFLVCCFG----EGQKAD 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig~S-----------~h--------~~-~e~~~A~~~~gaDyv~~gpv----Tk~~~g 224 (921)
...+-..+| ++ .+ .++.. +| ++ +-+.+. .+.|+.-+++--| |...+.
T Consensus 111 ~~l~~~~~~~G---~~-~i--v~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~eii~tdI~~dGt~~G~d 183 (253)
T d1thfd_ 111 SLITQIAQTFG---SQ-AV--VVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEV-EKRGAGEILLTSIDRDGTKSGYD 183 (253)
T ss_dssp HHHHHHHHHHC---GG-GE--EEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH-HHTTCSEEEEEETTTTTSCSCCC
T ss_pred HHHHHHHHHcC---Ce-eE--EEeeeecccCCceeeeeeecccccchhHHHHHHHH-HhccCCEEEEEEecccCccCCcc
Confidence 123333344 33 22 11111 11 23 346666 7889998888666 444455
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~ 266 (921)
++ ...+.+..++||++-||++ .+++.++...|++||++.+|-
T Consensus 184 ~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal 227 (253)
T d1thfd_ 184 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 227 (253)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred ccccccccccccceEEEecCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 54 5778888999999999996 688999999999999876654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=95.25 E-value=0.0035 Score=59.08 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
++|+++|++|+|||||++.+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 47999999999999999999874
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.16 E-value=0.014 Score=57.43 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=45.2
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLYQ 505 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~~ 505 (921)
+++++|+|+..+ ..+...+..+|.+++|+..+..-...-.+++..+.+.+.|++ +|+||.|...
T Consensus 113 d~IiiD~~~~~~------~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~ 177 (237)
T d1g3qa_ 113 DFILIDCPAGLQ------LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp SEEEEECCSSSS------HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred CEEEEccccccc------ccchhhhhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhccccccc
Confidence 689999998531 235556778999999998763322333456666677777876 8999998654
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.064 Score=51.40 Aligned_cols=154 Identities=14% Similarity=-0.039 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCHHHH-HHHHHHHHHHhhc-CceEEecCcHH----HHHhCCCCeEEcCCCCCC--HHHH
Q 002437 103 DLIDEAVAKFVGIVVLNGGEASGKSV-YEAACLLKSVVKD-RALFLIAERVD----IAAAVNASGVLLSDQGLP--AIVA 174 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k~~~~~~~-~~~a~~l~~~~~~-~~~~ivnd~~d----la~~~~a~GvHL~~~~l~--~~~~ 174 (921)
+-++.+.+.|++++=+=--.-+.+.. .+.|+++....+. .+.+++|...+ ++..++.|-|+|-...-+ ....
T Consensus 12 ~d~~~~~~~gaD~iGfif~~~SpR~Vs~~~a~~i~~~~~~~~V~Vfv~~~~~~i~~~~~~~~~d~iQlHG~e~~~~~~~l 91 (198)
T d1piia1 12 QDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTL 91 (198)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCCCEEEEEESSCCHHHHHHHHHHHTCSEEEECSCCCHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEccCCCCCCcCHHHHHHhhhhcccccceeeeccchhhHHHhhhcccccceeecCCccHHHHHHH
Confidence 55777888898875442211122222 3456666666654 57788887755 455678999999554322 1233
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEe-CCC--CCCCCCcchhhhhhcCCCCEEEEcCCCccChHH
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVC-CFG--EGQKADVIENSLFTNVKIPIFIMNASPLVDVSK 251 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~-gpv--Tk~~~g~~~~~~~~~~~~Pv~aiGGi~~~~~~~ 251 (921)
|... +. .+..+...+..+..... ....+|++++ +.. |..... -..+......|++.-|||+++|+.+
T Consensus 92 ~~~~----~~-~~~~~~~~~~~~~~~~~---~~~~~d~~lld~~~gGtG~~fd--w~~~~~~~~~~~~LAGGl~~~Nv~~ 161 (198)
T d1piia1 92 REAL----PA-HVAIWKALSVGETLPAR---EFQHVDKYVLDNGQGGSGQRFD--WSLLNGQSLGNVLLAGGLGADNCVE 161 (198)
T ss_dssp HHHS----CT-TSEEEEEEECSSSCCCC---CCTTCCEEEEESCSCCSSCCCC--GGGGTTSCCTTEEEESSCCTTTHHH
T ss_pred hccc----cc-cccceeccchhhhhhHH---HhhhhcccccCCcccccceeee--hhhhcccccceeEEecCCCHHHHHH
Confidence 4433 22 11112233332322221 2345777666 322 111111 1223344567999999999999999
Q ss_pred HHHcCCcEEEEeecc
Q 002437 252 FLKSGASGFVISLED 266 (921)
Q Consensus 252 ~~~~Ga~gva~~~a~ 266 (921)
+.+.+..||=+++..
T Consensus 162 a~~~~p~gvDvsSGv 176 (198)
T d1piia1 162 AAQTGCAGLDFNSAV 176 (198)
T ss_dssp HHTTCCSEEEECGGG
T ss_pred HHhcCCCEEEeCCcc
Confidence 999999999776644
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.10 E-value=0.025 Score=56.70 Aligned_cols=158 Identities=12% Similarity=0.082 Sum_probs=99.9
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCH---HHHHHHHHHHHHHhhcCceEEecC------cHHHHHhCCCCeEEcCCCCCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASG---KSVYEAACLLKSVVKDRALFLIAE------RVDIAAAVNASGVLLSDQGLP 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~---~~~~~~a~~l~~~~~~~~~~ivnd------~~dla~~~~a~GvHL~~~~l~ 170 (921)
+.++.+....+.|++.+++=+-+... ....+...++...| ..++.+.. ..+-+...||+=|-++..-..
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~ 110 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 110 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccccccccHHHHHHHHHhhc--CCcceeecccchhhhhhhHhhcCCcEEEecccccC
Confidence 34567777778999887776543332 22333444444333 56777643 344555679999999754221
Q ss_pred ----HHHHHHhcccCCCCccccCeEEEec-----------C--------CHHH-HHcccccCCCCEEEeCCC----CCCC
Q 002437 171 ----AIVARNTMKDSMSESVVLPLVGRNV-----------Q--------TLDA-AFNASSSEGADFLVCCFG----EGQK 222 (921)
Q Consensus 171 ----~~~~r~~~~~~~~~~~~~~~ig~S~-----------h--------~~~e-~~~A~~~~gaDyv~~gpv----Tk~~ 222 (921)
...+-..+| ++ .+ .++.-+ | ++.+ ++.. ...|+.-+++-.| |...
T Consensus 111 ~~~~~~~~~~~~G---~q-~i--v~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~g~~eii~tdI~~dG~~~G 183 (252)
T d1h5ya_ 111 NPQLVALLAREFG---SQ-ST--VVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEV-EELGAGEILLTSIDRDGTGLG 183 (252)
T ss_dssp CTHHHHHHHHHHC---GG-GE--EEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHH-HHHTCSEEEEEETTTTTTCSC
T ss_pred CcchHHHHHHhcC---CC-cE--EEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHH-HhcCCCEEEEEeecccCccCC
Confidence 222333344 33 22 222222 2 4544 4566 7889999998777 3444
Q ss_pred CCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecc
Q 002437 223 ADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 223 ~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~ 266 (921)
+.++ ...+.+.+++||++-||++ .+++..+.+.|++||++.++-
T Consensus 184 ~d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l 229 (252)
T d1h5ya_ 184 YDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLF 229 (252)
T ss_dssp CCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred cCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHH
Confidence 4444 5788888999999999997 689999999999999776554
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.005 Score=57.26 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.|.|+|+|.+|||||||+|.|+.
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999984
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=95.02 E-value=0.038 Score=53.43 Aligned_cols=166 Identities=14% Similarity=-0.015 Sum_probs=99.7
Q ss_pred EEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---Cc-eEEecCcHHHHHhCCCCeEE
Q 002437 88 LQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RA-LFLIAERVDIAAAVNASGVL 163 (921)
Q Consensus 88 lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~-~~ivnd~~dla~~~~a~GvH 163 (921)
+..|.... +.++..+.++.+.++|++.+-+--.+- ...+....+++-... |+ .++=-+.++-|...||+=+-
T Consensus 19 iipvl~~~-~~~~a~~~~~al~~~Gi~~iEitl~~p---~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fiv 94 (216)
T d1mxsa_ 19 ILPVITIA-REEDILPLADALAAGGIRTLEVTLRSQ---HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVV 94 (216)
T ss_dssp EEEEECCS-CGGGHHHHHHHHHHTTCCEEEEESSST---HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEE
T ss_pred EEEEEECC-CHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEE
Confidence 44444332 234778999999999999977655322 233444444443322 22 22223567788888876333
Q ss_pred cCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC-CCCEEEE
Q 002437 164 LSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV-KIPIFIM 241 (921)
Q Consensus 164 L~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~-~~Pv~ai 241 (921)
-+.-+..+..+-... + ++.+=|+ -++.|+..| .+.|+|++=+=|... .-|.. .+.+..-. ++|.++.
T Consensus 95 sP~~~~~v~~~a~~~-----~--i~~iPGv--~TpsEi~~A-~~~G~~~vKlFPA~~-~~g~~~ikal~~p~p~~~fipt 163 (216)
T d1mxsa_ 95 TPGITEDILEAGVDS-----E--IPLLPGI--STPSEIMMG-YALGYRRFKLFPAEI-SGGVAAIKAFGGPFGDIRFCPT 163 (216)
T ss_dssp CSSCCHHHHHHHHHC-----S--SCEECEE--CSHHHHHHH-HTTTCCEEEETTHHH-HTHHHHHHHHHTTTTTCEEEEB
T ss_pred CCCCcHHHHHHHHhc-----C--CCccCCc--CCHHHHHHH-HHCCCCEEEeccccc-cccHHHHHHHhcccccCceecc
Confidence 333332222222221 1 1113355 489999999 899999998866411 01222 34444433 5889999
Q ss_pred cCCCccChHHHHHcCCcEEEEeecccc
Q 002437 242 NASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 242 GGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
|||+++|+.+-+++|+-.++..+..++
T Consensus 164 GGV~~~n~~~yl~~~~v~avggs~l~~ 190 (216)
T d1mxsa_ 164 GGVNPANVRNYMALPNVMCVGTTWMLD 190 (216)
T ss_dssp SSCCTTTHHHHHHSTTBCCEEECTTSC
T ss_pred CCCCHHHHHHHHhcCCeEEEEccccCC
Confidence 999999999999999877765555544
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.94 E-value=0.022 Score=55.87 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=40.5
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhhcCCeEE-EEEeCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQWKKKVV-FVLNKSDLY 504 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~~~~~vi-vVlNK~D~~ 504 (921)
.+++++|||+..+. .+...+..+|.+++|++.+......-.+.+..+.+.+.+++ +|+||.+..
T Consensus 110 ~D~viiD~~~~~~~------~~~~~l~~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 110 TDILLLDAPAGLER------SAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 174 (232)
T ss_dssp CSEEEEECCSSSSH------HHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred cceeeecccccccc------hhHHHhhhhheeeeeccccccchhhhhhhhhhhhhcccccccccccccccc
Confidence 36899999986421 23344556999999998763222222334455556666644 789998754
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=94.92 E-value=0.11 Score=49.90 Aligned_cols=155 Identities=10% Similarity=-0.065 Sum_probs=90.0
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCHHHH-HHHHHHHHHHhhc---CceEEecCcHH----HHHhCCCCeEEcCCCCCCHHHH
Q 002437 103 DLIDEAVAKFVGIVVLNGGEASGKSV-YEAACLLKSVVKD---RALFLIAERVD----IAAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k~~~~~~~-~~~a~~l~~~~~~---~~~~ivnd~~d----la~~~~a~GvHL~~~~l~~~~~ 174 (921)
+-++.|.+.|++++=+=--..+.+.. .+.|+.+.+.+.. .+.+++|...+ ++..++.|-|+|-... +....
T Consensus 12 ed~~~~~~~gad~iGfif~~~SpR~vs~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~~~~~~~d~vQlHg~e-~~~~~ 90 (200)
T d1v5xa_ 12 EDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHGEE-PPEWA 90 (200)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECSCC-CHHHH
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCcCHHHHHHHHHhhcCceeeeeeeeechhhhhhhhhcccccccccccccC-CHHHH
Confidence 45777888898775442211122221 3456777776654 35677787655 5556799999995543 44455
Q ss_pred HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC-CCCCCCcch--hhhhhcCCCCEEEEcCCCccChHH
Q 002437 175 RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG-EGQKADVIE--NSLFTNVKIPIFIMNASPLVDVSK 251 (921)
Q Consensus 175 r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv-Tk~~~g~~~--~~~~~~~~~Pv~aiGGi~~~~~~~ 251 (921)
+.+. ....+ +.....-+......+ ...+||+++-.- ....-|... .+.......|++.-|||+++|+.+
T Consensus 91 ~~l~----~~~~i--ik~~~~~~~~~~~~~--~~~~~~~L~D~~~~g~g~~~~~~~~~~~~~~~~~~~LAGGl~~~Nv~~ 162 (200)
T d1v5xa_ 91 EAVG----RFYPV--IKAFPLEGPARPEWA--DYPAQALLLDGKRPGSGEAYPRAWAKPLLATGRRVILAGGIAPENLEE 162 (200)
T ss_dssp HHHT----TTSCE--EEEEECSSSCCGGGG--GSSCSEEEEECSSTTSCCCCCGGGGHHHHHTTSCEEECSSCCSTTHHH
T ss_pred HHHh----hcccc--ceeeccCchhhHHHh--hcchhheeecccccCcccccchHHHhhhhhccCceEecCCCCHHHHHH
Confidence 5442 11111 334444333333332 456888776432 111112221 111223568999999999999999
Q ss_pred HHHcCCcEEEEeecc
Q 002437 252 FLKSGASGFVISLED 266 (921)
Q Consensus 252 ~~~~Ga~gva~~~a~ 266 (921)
+.+.+..||=+++..
T Consensus 163 ~~~~~p~gvDvsSGv 177 (200)
T d1v5xa_ 163 VLALRPYALDLASGV 177 (200)
T ss_dssp HHHHCCSEEEESGGG
T ss_pred HHhcCCCEEEEcCce
Confidence 999999999665544
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.03 Score=52.47 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..+..|+++|.+||||||+...|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999998854
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.49 E-value=0.07 Score=51.85 Aligned_cols=158 Identities=9% Similarity=-0.017 Sum_probs=98.9
Q ss_pred chHHHHHHHHhcCCcEEEEeC------CCCCHHHHHHHHHHHHHHhhc--CceEEecC---cHHHHHhCCCC--eEEcCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNG------GEASGKSVYEAACLLKSVVKD--RALFLIAE---RVDIAAAVNAS--GVLLSD 166 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~------k~~~~~~~~~~a~~l~~~~~~--~~~~ivnd---~~dla~~~~a~--GvHL~~ 166 (921)
.+.+.++.+.++|++++|+.- |+.+-. .+..+.++..+.- .+-+++.+ .++.....|++ -+|...
T Consensus 15 ~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g--~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E~ 92 (217)
T d2flia1 15 NFASELARIEETDAEYVHIDIMDGQFVPNISFG--ADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTES 92 (217)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBC--HHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCCCccccC--HHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEecccc
Confidence 677888888899999999973 333221 2244555555543 57788887 56666777998 677755
Q ss_pred CCCCHHHHHHhcccCCCCccccCeEEEecC---CHHHHHcccccCCCCEEEeCCCCCCCCC-------cc-hhhhh---h
Q 002437 167 QGLPAIVARNTMKDSMSESVVLPLVGRNVQ---TLDAAFNASSSEGADFLVCCFGEGQKAD-------VI-ENSLF---T 232 (921)
Q Consensus 167 ~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h---~~~e~~~A~~~~gaDyv~~gpvTk~~~g-------~~-~~~~~---~ 232 (921)
..-+....+.+.. .+ . -+|.+.+ +++.+..- -.-+|+|.+=.|..-..| +. ..+++ .
T Consensus 93 ~~~~~~~i~~i~~---~g-~---~~Gial~p~T~~~~~~~~--l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~ 163 (217)
T d2flia1 93 TRHIHGALQKIKA---AG-M---KAGVVINPGTPATALEPL--LDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRD 163 (217)
T ss_dssp CSCHHHHHHHHHH---TT-S---EEEEEECTTSCGGGGGGG--TTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHh---cC-C---eEEEEecCCcchhHHHhH--HhhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHH
Confidence 4434333443321 12 1 2444443 34555443 346899987555211112 11 12232 2
Q ss_pred --cCCCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 233 --NVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 233 --~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
..++++.+=|||+.+|+..+.++||+.+++-++.++
T Consensus 164 ~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~Gsaif~ 201 (217)
T d2flia1 164 EKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFK 201 (217)
T ss_dssp HTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHT
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 346889999999999999999999999988777654
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=94.32 E-value=0.22 Score=51.33 Aligned_cols=142 Identities=17% Similarity=0.176 Sum_probs=85.0
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC----cHHHHHhCCCCeEEcC-CCCCC------HHHHHHh
Q 002437 110 AKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE----RVDIAAAVNASGVLLS-DQGLP------AIVARNT 177 (921)
Q Consensus 110 ~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd----~~dla~~~~a~GvHL~-~~~l~------~~~~r~~ 177 (921)
.+|+.++. +..+..+..+....+++.-.. ++.+-+|. +++...+.|+|=+-+. ...-+ ....|..
T Consensus 60 ~GGlGvi~---r~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~ 136 (330)
T d1vrda1 60 EGGIGIIH---KNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKAD 136 (330)
T ss_dssp TTCEEEEC---SSSCHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH
T ss_pred CCCeEEee---cccchhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHHCCCCEEEEecCCCCchhHHHHHHHHHHh
Confidence 35555553 345666655555544432212 44555553 3344444566643332 11112 2233443
Q ss_pred cccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CCC--CCCcc-------hhhhhhcCCCCEEEEc
Q 002437 178 MKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EGQ--KADVI-------ENSLFTNVKIPIFIMN 242 (921)
Q Consensus 178 ~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk~--~~g~~-------~~~~~~~~~~Pv~aiG 242 (921)
. |+. .++.-.|-+.+.++.. .+.|||.|.+| |- |.. +.|.. ....++..++||+|-|
T Consensus 137 ~----~~~---~viaGnV~t~~~a~~l-~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdG 208 (330)
T d1vrda1 137 Y----PDL---PVVAGNVATPEGTEAL-IKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADG 208 (330)
T ss_dssp C----TTS---CEEEEEECSHHHHHHH-HHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEES
T ss_pred C----CCC---CEEeechhHHHHHHHH-HHcCCCEEeeccccCccccccceeccccccchhHHHHHHHHHhcCceEEecC
Confidence 3 452 3677778888888877 68899998765 43 221 33433 1455677899999999
Q ss_pred CCC-ccChHHHHHcCCcEEEE
Q 002437 243 ASP-LVDVSKFLKSGASGFVI 262 (921)
Q Consensus 243 Gi~-~~~~~~~~~~Ga~gva~ 262 (921)
||. ..++..++.+||++|-+
T Consensus 209 Gi~~~gdiakAla~GAd~Vm~ 229 (330)
T d1vrda1 209 GIRYSGDIVKALAAGAESVMV 229 (330)
T ss_dssp CCCSHHHHHHHHHTTCSEEEE
T ss_pred CcccCCchheeeeccCceeee
Confidence 994 77899999999999965
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=94.32 E-value=0.053 Score=54.19 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=102.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC---------------------HHHHHHHHHHHHHHhhc-Cce
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS---------------------GKSVYEAACLLKSVVKD-RAL 144 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~---------------------~~~~~~~a~~l~~~~~~-~~~ 144 (921)
-.|++.... +.+.+++.++...++|++++-+=-|-.+ .....+.+ .++... ..+
T Consensus 20 i~y~~aG~P-~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~---~~~r~~~~~p 95 (261)
T d1rd5a_ 20 IPYITAGDP-DLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEML---REVTPELSCP 95 (261)
T ss_dssp EEEEETTSS-CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHH---HHHGGGCSSC
T ss_pred EEEEeCcCC-CHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhh---hcccccccCc
Confidence 456666532 2347788888888999999988654332 22223333 333333 566
Q ss_pred EEecC--------cHHHHHhCCCCeEEcCCCCCCHHHHHHhc---ccCCCCccccCeEEEecCCHHHHHccc-ccCCCCE
Q 002437 145 FLIAE--------RVDIAAAVNASGVLLSDQGLPAIVARNTM---KDSMSESVVLPLVGRNVQTLDAAFNAS-SSEGADF 212 (921)
Q Consensus 145 ~ivnd--------~~dla~~~~a~GvHL~~~~l~~~~~r~~~---~~~~~~~~~~~~ig~S~h~~~e~~~A~-~~~gaDy 212 (921)
+++-. ..+-+.+.|+||+=+.+ +|..++..+. ...+-+ .+.+++-+ .+.+-+++.+ ...|.=|
T Consensus 96 ~ilm~Y~n~~~~~~~~~~~~~GvdG~IipD--lp~eE~~~~~~~~~~~gl~--~I~lvaPt-t~~~Ri~~i~~~a~gFvY 170 (261)
T d1rd5a_ 96 VVLLSYYKPIMFRSLAKMKEAGVHGLIVPD--LPYVAAHSLWSEAKNNNLE--LVLLTTPA-IPEDRMKEITKASEGFVY 170 (261)
T ss_dssp EEEECCSHHHHSCCTHHHHHTTCCEEECTT--CBTTTHHHHHHHHHHTTCE--ECEEECTT-SCHHHHHHHHHHCCSCEE
T ss_pred eeeeeeecchhhHHHHHHHhcCceeeeecC--ccHHHHHHHHHHHhccccc--eEEEeccC-CchhHHHHHHhcCcchhh
Confidence 66533 35567788999999965 4543332221 000012 22233222 2333333320 2345555
Q ss_pred EEeC-CCCCCCC----Ccc--hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 213 LVCC-FGEGQKA----DVI--ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 213 v~~g-pvTk~~~----g~~--~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
++-. ++|.... .+. ...+++.+++||++--|| +++++..+.++||+||.|-+|.++.
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~ 235 (261)
T d1rd5a_ 171 LVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQ 235 (261)
T ss_dssp EECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred hhhccCcccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHH
Confidence 4433 3454322 222 367788889999999999 5799999999999999988887765
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=94.29 E-value=0.12 Score=51.81 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=102.6
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeC----CCCCHHHHHHHH--------------HHHHHHhhc--CceEE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNG----GEASGKSVYEAA--------------CLLKSVVKD--RALFL 146 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~----k~~~~~~~~~~a--------------~~l~~~~~~--~~~~i 146 (921)
--|+..... +.+...+.+..+.++|++++-+=- |-.+..-..+.. ..+..+... ..+++
T Consensus 20 i~y~t~G~P-~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~piv 98 (267)
T d1qopa_ 20 VPFVTLGDP-GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIG 98 (267)
T ss_dssp EEEEETTSS-CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEE
T ss_pred EEEEeCcCC-CHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceE
Confidence 346665542 234667888888899999999874 444433222111 122233333 35565
Q ss_pred e------------cCcHHHHHhCCCCeEEcCCCCCCHHHH---HHhcccCCCCccccCeEEEecCCHHHHHccc-ccCCC
Q 002437 147 I------------AERVDIAAAVNASGVLLSDQGLPAIVA---RNTMKDSMSESVVLPLVGRNVQTLDAAFNAS-SSEGA 210 (921)
Q Consensus 147 v------------nd~~dla~~~~a~GvHL~~~~l~~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~-~~~ga 210 (921)
+ .....-|.+.|+||+-+.+ +|..+. ++.....+-+ .+.++.-+ .+.+-+.+.+ ...|.
T Consensus 99 lm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipD--lP~ee~~~~~~~~~~~~l~--~I~lvaPt-t~~~Ri~~i~~~a~gF 173 (267)
T d1qopa_ 99 LLMYANLVFNNGIDAFYARCEQVGVDSVLVAD--VPVEESAPFRQAALRHNIA--PIFICPPN-ADDDLLRQVASYGRGY 173 (267)
T ss_dssp EEECHHHHHTTCHHHHHHHHHHHTCCEEEETT--CCGGGCHHHHHHHHHTTCE--EECEECTT-CCHHHHHHHHHHCCSC
T ss_pred EEeeccchhhcCchHHHHHHHhcCCCceeccc--hhhhhhHHHHHhhhccCce--EEEEeccc-ccHHHHHHHHhhCchh
Confidence 5 2346778889999999976 453322 2211100012 22333332 2333333320 23555
Q ss_pred CEEEeCCC-CCCC----CCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecccccc
Q 002437 211 DFLVCCFG-EGQK----ADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 211 Dyv~~gpv-Tk~~----~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
=|++-.+- |... ..+. ...+++.+++||++-.||+ ++++.++.+.||+||.|-+|.++..
T Consensus 174 iY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk~i 241 (267)
T d1qopa_ 174 TYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKII 241 (267)
T ss_dssp EEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred hhhhcccccCCcccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 55444442 4332 2333 4788888999999999996 6789999999999999988887763
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.84 E-value=0.31 Score=50.91 Aligned_cols=145 Identities=16% Similarity=0.111 Sum_probs=88.6
Q ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc---CceEEecC-cHHHH---HhCCCCeEEcCCCCCC-------HH
Q 002437 107 EAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD---RALFLIAE-RVDIA---AAVNASGVLLSDQGLP-------AI 172 (921)
Q Consensus 107 ~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~---~~~~ivnd-~~dla---~~~~a~GvHL~~~~l~-------~~ 172 (921)
-+-.+|+.+++ +..+..+..+........... ++.+-++. ..+.+ .+.|+|=+-+.-..-. ..
T Consensus 64 ls~~Gglgvlh---r~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~ 140 (365)
T d1zfja1 64 IARAGGLGVIH---KNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIA 140 (365)
T ss_dssp HHHTTCEEEEC---CSSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHH
T ss_pred HHHCCCceEEc---CccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHcCCCEEEEECCcccccchhHHHH
Confidence 34457777765 345655555555554443322 22233333 33333 3447775544322211 23
Q ss_pred HHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CC--CCCCcc-h------hhhhhcCCCC
Q 002437 173 VARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EG--QKADVI-E------NSLFTNVKIP 237 (921)
Q Consensus 173 ~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk--~~~g~~-~------~~~~~~~~~P 237 (921)
..|... |+. .+|.-.|-+.+.+... ...|||.|-+| |- |. ...|.. . ...+....+|
T Consensus 141 ~ik~~~----~~~---~iIaGNV~T~e~a~~L-~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~ 212 (365)
T d1zfja1 141 EIRAHF----PNR---TLIAGNIATAEGARAL-YDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKT 212 (365)
T ss_dssp HHHHHC----SSS---CEEEEEECSHHHHHHH-HHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCE
T ss_pred HHHhhC----CCc---ceeecccccHHHHHHH-HhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCce
Confidence 345544 552 3788889999998888 78999997665 43 22 233433 1 3455677899
Q ss_pred EEEEcCCC-ccChHHHHHcCCcEEEE
Q 002437 238 IFIMNASP-LVDVSKFLKSGASGFVI 262 (921)
Q Consensus 238 v~aiGGi~-~~~~~~~~~~Ga~gva~ 262 (921)
|+|=|||. ..++..++++||+.|-+
T Consensus 213 iIADGGi~~~GDi~KAla~GAd~VMl 238 (365)
T d1zfja1 213 IIADGGIKYSGDIVKALAAGGNAVML 238 (365)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEecCCcCcchhhhhhhhccCCEEEe
Confidence 99999994 77899999999999965
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.014 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.|+|+|++|||||||++.|.|--
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34589999999999999999999953
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.79 E-value=0.014 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.2
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..+|+|+|.+|+|||||.++|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.63 E-value=0.037 Score=52.32 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
...++.|+|.|.+|||||||.+.|..
T Consensus 19 ~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999863
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=93.57 E-value=0.065 Score=53.43 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=98.7
Q ss_pred chHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecC------cHHHHHhCCCCeEEcCCCCC--C
Q 002437 100 DALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAE------RVDIAAAVNASGVLLSDQGL--P 170 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd------~~dla~~~~a~GvHL~~~~l--~ 170 (921)
+..+.++...+.|++.+++=+-+............+..++.. ..++.+-. ..+-....||+-|-++..-+ |
T Consensus 31 dP~~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~ 110 (251)
T d1ka9f_ 31 DPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRP 110 (251)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCT
T ss_pred CHHHHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhCH
Confidence 456777777788988777766443322222233444555555 66776643 23344456999999976421 1
Q ss_pred --HHHHHHhcccCCCCccccCeEE-----------EecC--------CHHH-HHcccccCCCCEEEeCCC----CCCCCC
Q 002437 171 --AIVARNTMKDSMSESVVLPLVG-----------RNVQ--------TLDA-AFNASSSEGADFLVCCFG----EGQKAD 224 (921)
Q Consensus 171 --~~~~r~~~~~~~~~~~~~~~ig-----------~S~h--------~~~e-~~~A~~~~gaDyv~~gpv----Tk~~~g 224 (921)
...+-..+| .. .+ .++ +.+| ++.+ +... ...|+..+++--| |...+.
T Consensus 111 ~~i~~~~~~~G---~q-~i--v~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~eii~tdi~~dG~~~G~d 183 (251)
T d1ka9f_ 111 ELIRELADHFG---AQ-AV--VLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKG-VELGAGEILLTSMDRDGTKEGYD 183 (251)
T ss_dssp HHHHHHHHHHC---GG-GE--EEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHH-HHHTCCEEEEEETTTTTTCSCCC
T ss_pred HHHHHHHHhhc---cc-cc--ccccchhhcccceEEEeccceecCCccHHHHHHHH-HhcCCCEEEEEeecccCccCCcc
Confidence 112222233 22 21 111 1112 3433 5555 6889999999877 334444
Q ss_pred cc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeecc
Q 002437 225 VI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLED 266 (921)
Q Consensus 225 ~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~ 266 (921)
++ ...+.+.+++|++|-||++ .+++.++.+.|+.||++..|-
T Consensus 184 ~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al 227 (251)
T d1ka9f_ 184 LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVF 227 (251)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred hhHHHHHHhhcceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHH
Confidence 44 4788888999999999996 688999999999999765543
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.35 E-value=0.25 Score=51.98 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=88.4
Q ss_pred hcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-------------CceEEecC----cHHHHHhCCCCeEEcCCCCC-C-
Q 002437 110 AKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-------------RALFLIAE----RVDIAAAVNASGVLLSDQGL-P- 170 (921)
Q Consensus 110 ~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-------------~~~~ivnd----~~dla~~~~a~GvHL~~~~l-~- 170 (921)
.+|+.+++ +..+.++..+....+...... ++.+=+++ +.++....|++=+-+.-..- .
T Consensus 69 ~GGLGvLh---r~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~ 145 (378)
T d1jr1a1 69 TGGIGFIH---HNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSI 145 (378)
T ss_dssp HTCEEEEC---CSSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSH
T ss_pred CCCeeEEc---CCCCHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCHHHHHHHHHHHhhccceEeeeccCccch
Confidence 58888876 366777766666666654321 01122222 24445555665443321111 1
Q ss_pred -----HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC------CCC--CCCcc-------hhhh
Q 002437 171 -----AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG------EGQ--KADVI-------ENSL 230 (921)
Q Consensus 171 -----~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv------Tk~--~~g~~-------~~~~ 230 (921)
....|... |+. .+|.-.|.+.+.+... ...|||.|.+|=. |.. ..|.. ....
T Consensus 146 ~~~~~i~~ik~~~----~~~---~iIaGnVaT~e~a~~L-~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~ 217 (378)
T d1jr1a1 146 FQINMIKYMKEKY----PNL---QVIGGNVVTAAQAKNL-IDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEY 217 (378)
T ss_dssp HHHHHHHHHHHHS----TTC---EEEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHC----CCC---ceeecccccHHHHHHH-HHhCCCEEeeccccccccccccccccCcccchhhhHHHHh
Confidence 22334443 452 3678889999998888 7899999987732 211 23332 1455
Q ss_pred hhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEE
Q 002437 231 FTNVKIPIFIMNASP-LVDVSKFLKSGASGFVI 262 (921)
Q Consensus 231 ~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~ 262 (921)
++...+||+|=|||. ..++..++.+||++|-+
T Consensus 218 a~~~~vpIIADGGi~~~gdiakAla~GAd~VMm 250 (378)
T d1jr1a1 218 ARRFGVPVIADGGIQNVGHIAKALALGASTVMM 250 (378)
T ss_dssp HGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hcccCCceecccccccCCceeeEEEeecceeee
Confidence 667799999999994 77899999999999965
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.31 E-value=0.019 Score=57.52 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|++|||||||++.|+|-.
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhccc
Confidence 34589999999999999999999853
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.21 E-value=0.024 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+.+++|+++|.+||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.15 E-value=0.018 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.|+|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999964
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.13 E-value=0.081 Score=52.28 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=97.3
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCC---------------------CHHHHHHHHHHHHHHhhcCceE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEA---------------------SGKSVYEAACLLKSVVKDRALF 145 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~---------------------~~~~~~~~a~~l~~~~~~~~~~ 145 (921)
--|+..... +.+..++.+. +++.|++++-+=-|-. +-....+.++++++-+ ..++
T Consensus 8 i~y~taG~P-~~~~s~~~l~-~l~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~--~~pi 83 (248)
T d1geqa_ 8 IPYLTAGDP-DKQSTLNFLL-ALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS--STPI 83 (248)
T ss_dssp EEEEETTSS-CHHHHHHHHH-HHGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC--CCCE
T ss_pred EEEEcCcCC-CHHHHHHHHH-HHHcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcC--CCcE
Confidence 345555432 2235556664 4678999988844332 2233344444443321 5676
Q ss_pred Eec------------CcHHHHHhCCCCeEEcCCCCCCHHHHHHhccc---CCCCccccCeEEEecCCH-HHHHccc-ccC
Q 002437 146 LIA------------ERVDIAAAVNASGVLLSDQGLPAIVARNTMKD---SMSESVVLPLVGRNVQTL-DAAFNAS-SSE 208 (921)
Q Consensus 146 ivn------------d~~dla~~~~a~GvHL~~~~l~~~~~r~~~~~---~~~~~~~~~~ig~S~h~~-~e~~~A~-~~~ 208 (921)
++= ....-|...|+||+=+.+ +|..++.++... .+-+ . +.-+|.++. +-+++.+ ...
T Consensus 84 vlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipD--LP~eE~~~~~~~~~~~gl~-~---I~lvaPtt~~~ri~~i~~~s~ 157 (248)
T d1geqa_ 84 VLMTYYNPIYRAGVRNFLAEAKASGVDGILVVD--LPVFHAKEFTEIAREEGIK-T---VFLAAPNTPDERLKVIDDMTT 157 (248)
T ss_dssp EEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT--CCGGGHHHHHHHHHHHTCE-E---EEEECTTCCHHHHHHHHHHCS
T ss_pred EEEeccccccccCHHHHhhhhcccCeeEEeccC--CcHHHHHHHHhhccccCcc-e---EEEecccchhHHHHHHHhcCC
Confidence 652 334556678999999965 565544332110 0022 1 233444443 3343330 234
Q ss_pred CCCEEEeCCC-CCCCC----Ccc--hhhhhhcCCCCEEEEcCC-CccChHHHHHcCCcEEEEeecccccc
Q 002437 209 GADFLVCCFG-EGQKA----DVI--ENSLFTNVKIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSLF 270 (921)
Q Consensus 209 gaDyv~~gpv-Tk~~~----g~~--~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~~ 270 (921)
|.=|++-.+- |.... .+. ...+++.+++||++--|| +++++.++.+.||+||.|-+|.++..
T Consensus 158 gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~~i 227 (248)
T d1geqa_ 158 GFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKII 227 (248)
T ss_dssp SEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHH
T ss_pred CeEEEEecccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 4444433332 43221 222 377888899999998899 57889999999999999988887764
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.10 E-value=0.075 Score=49.09 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=51.9
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc-hhhhhhcC--CCCEEEEcCCCccChHHHHHcCCcEEE
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI-ENSLFTNV--KIPIFIMNASPLVDVSKFLKSGASGFV 261 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~-~~~~~~~~--~~Pv~aiGGi~~~~~~~~~~~Ga~gva 261 (921)
-|-+-|.+.+++..| ...|+|.|.|--. +++ ..++.+.. .+.+-|-|||+++|+.+..++|++.|.
T Consensus 81 ~IeVEv~~~~~~~~a-~~~g~diImLDN~-----~pe~~~~av~~i~~~~~lEaSGgI~~~ni~~ya~~GVD~IS 149 (167)
T d1qapa1 81 PVEVEVENLDELDDA-LKAGADIIMLDNF-----NTDQMREAVKRVNGQARLEVSGNVTAETLREFAETGVDFIS 149 (167)
T ss_dssp CEEEEESSHHHHHHH-HHTTCSEEEESSC-----CHHHHHHHHHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEE
T ss_pred eEEEecCcHHHHHHH-HhcCCcEEEecCC-----CHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 478899999999999 7999999999544 222 22223322 466778999999999999999999994
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=93.08 E-value=0.093 Score=51.35 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=76.6
Q ss_pred cHHHHHhCCCCeEEcCCCCCC--HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC----CCCCC
Q 002437 150 RVDIAAAVNASGVLLSDQGLP--AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG----EGQKA 223 (921)
Q Consensus 150 ~~dla~~~~a~GvHL~~~~l~--~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv----Tk~~~ 223 (921)
.++.+..+|++++.+|...-. ..............+. .+-+.+++.++...+ ...+.|++.+-|+ |...+
T Consensus 77 s~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl---~~ivcvge~~~~~~~-~~~~~~iIayep~waIGtg~~~ 152 (226)
T d1w0ma_ 77 SLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGL---DVVVCAPDPRTSLAA-AALGPHAVAVEPPELIGTGRAV 152 (226)
T ss_dssp BHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHH-HHTCCSEEEECCGGGTTTSCCH
T ss_pred eHhhhcccccceEEeechhhhhhccchHHHHHHHHHcCC---EEEEecCchHHhhhh-hccccceeeecchhhccCCCCC
Confidence 467888899999999876532 1111111000001111 234456899988888 7999999999998 43332
Q ss_pred Cc---c-----hhhhhhc-CCCCEEEEcCCCccC-hHHHHHcCCcEEEEeeccccc
Q 002437 224 DV---I-----ENSLFTN-VKIPIFIMNASPLVD-VSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 224 g~---~-----~~~~~~~-~~~Pv~aiGGi~~~~-~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.. + .+.+.+. .++||+.-|||+.+| ...+...|++|+.|-+|.+..
T Consensus 153 ~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a 208 (226)
T d1w0ma_ 153 SRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp HHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred ChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecC
Confidence 21 1 1233332 479999999999866 567889999999999988864
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.04 E-value=0.078 Score=49.21 Aligned_cols=70 Identities=7% Similarity=0.010 Sum_probs=51.9
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc--hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEE
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI--ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~ 262 (921)
.|-+-|.|++|+.+| ...|+|.|.|=-.+ +..+. ...+.... .+.+-|-|||+++|+.+...+|++.|.+
T Consensus 81 ~I~VEv~s~~q~~~a-~~~~~diImLDN~s--p~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD~IS~ 153 (169)
T d1qpoa1 81 PCEVEVDSLEQLDAV-LPEKPELILLDNFA--VWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAV 153 (169)
T ss_dssp CEEEEESSHHHHHHH-GGGCCSEEEEETCC--HHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred ceEEEeccHHHhhhh-hhcCCcEEEecCcC--hHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHHHHHcCCCEEEC
Confidence 578899999999999 89999999985431 11111 12222222 3567788999999999999999999954
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.022 Score=57.01 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|++|||||||++.|.|-.
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhccc
Confidence 44589999999999999999999963
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=92.94 E-value=0.025 Score=56.25 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|++|||||||++.|.|-.
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45589999999999999999999853
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.93 E-value=0.025 Score=57.56 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|+|.-
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34589999999999999999999953
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.028 Score=54.52 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=21.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.|+.|+|.|.+|||||||.+.|..
T Consensus 1 ~P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 1 EPFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998853
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.87 E-value=0.024 Score=55.70 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..=.++++|+.|||||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCcchhhHhccCCC
Confidence 34579999999999999999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.80 E-value=0.027 Score=55.44 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+.=.++++|+.|||||||++.|.|-.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34579999999999999999999963
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.77 E-value=0.025 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+|++|+|+|++||||||+.+.|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999998854
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=92.73 E-value=0.24 Score=52.28 Aligned_cols=73 Identities=29% Similarity=0.239 Sum_probs=55.6
Q ss_pred CeEEEecCCHHHHHcccccCCCCEEEeC--CC----CCC--CCCcc-h------hhhhhcCCCCEEEEcCC-CccChHHH
Q 002437 189 PLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EGQ--KADVI-E------NSLFTNVKIPIFIMNAS-PLVDVSKF 252 (921)
Q Consensus 189 ~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk~--~~g~~-~------~~~~~~~~~Pv~aiGGi-~~~~~~~~ 252 (921)
.+|+-.|-+.+.++.- ...|||.|-+| |- |.. ..|.. . ...+....+||+|=||| +..++..+
T Consensus 194 ~vIaGNV~T~e~a~~L-~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KA 272 (388)
T d1eepa_ 194 DLIAGNIVTKEAALDL-ISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKA 272 (388)
T ss_dssp EEEEEEECSHHHHHHH-HTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHH
T ss_pred ceeeccccCHHHHHHH-HhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeee
Confidence 3688889999988887 78899999666 43 222 34443 1 34455678999999999 47799999
Q ss_pred HHcCCcEEEE
Q 002437 253 LKSGASGFVI 262 (921)
Q Consensus 253 ~~~Ga~gva~ 262 (921)
+.+||+.|-+
T Consensus 273 la~GAd~VMl 282 (388)
T d1eepa_ 273 IAAGADSVMI 282 (388)
T ss_dssp HHHTCSEEEE
T ss_pred EEeccceeec
Confidence 9999999955
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.69 E-value=0.053 Score=50.41 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=52.0
Q ss_pred eEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc--hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEe
Q 002437 190 LVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI--ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVIS 263 (921)
Q Consensus 190 ~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~ 263 (921)
-|.+-|.+++|+.+| ...|+|.|.|--++. ..+. ...+.... .+.+-|-|||+++|+.+..++|++.|.+.
T Consensus 80 ~I~VEv~~~~e~~~a-~~~g~d~i~LDn~~p--e~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~~GVD~Is~g 153 (170)
T d1o4ua1 80 KIEVEVENLEDALRA-VEAGADIVMLDNLSP--EEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSS 153 (170)
T ss_dssp CEEEEESSHHHHHHH-HHTTCSEEEEESCCH--HHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEG
T ss_pred eEEEEeCcHHHHHHH-HhcCccEEEEcCcCh--hhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHHHHcCCCEEEcC
Confidence 478899999999999 799999999854411 1111 12233322 35567889999999999999999988543
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.68 E-value=0.025 Score=54.56 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|--
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 27 GNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhccc
Confidence 3478999999999999999999853
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.68 E-value=0.031 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..|.++|.+||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.56 E-value=0.03 Score=51.90 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHC
Q 002437 366 LLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg 386 (921)
.++|+|.+|||||||++.|+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.43 E-value=0.041 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..|..|+|+|++||||||+.+.|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999998864
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=92.39 E-value=0.86 Score=43.31 Aligned_cols=154 Identities=11% Similarity=-0.042 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCcEEEEe-CCCCCHHHH-HHHHHHHHHHhhc---CceEEecCcHH----HHHhCCCCeEEcCCCCCCHHH
Q 002437 103 DLIDEAVAKFVGIVVLN-GGEASGKSV-YEAACLLKSVVKD---RALFLIAERVD----IAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR-~k~~~~~~~-~~~a~~l~~~~~~---~~~~ivnd~~d----la~~~~a~GvHL~~~~l~~~~ 173 (921)
+-++.+.+.|++++=+= .+. +.+.. .+.|+++...+.. .+.+++|...+ ++..++.|-|+|-.. .+...
T Consensus 13 ~da~~~~~~gad~iGfI~~~~-SpR~Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~~~~~vQlhg~-e~~~~ 90 (205)
T d1nsja_ 13 EDALFSVESGADAVGFVFYPK-SKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHGE-EPIEL 90 (205)
T ss_dssp HHHHHHHHHTCSEEEEECCTT-CTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEECSC-CCHHH
T ss_pred HHHHHHHhCCCCEEeEeccCC-CCCccCHHHHHHHHhhhcccceeeccccccHHHHHHhhhhhccccchhccch-hhHHH
Confidence 45677778898774332 222 22221 3456667666653 35566776544 445678888888543 35555
Q ss_pred HHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCCCCCCCCcc---h----hhhhhcCCCCEEEEcCCCc
Q 002437 174 ARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFGEGQKADVI---E----NSLFTNVKIPIFIMNASPL 246 (921)
Q Consensus 174 ~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~---~----~~~~~~~~~Pv~aiGGi~~ 246 (921)
.+.+. +... -+...+.-+..++..+ .....+++++-..+...-|.+ . ..+.. ...||+.-|||++
T Consensus 91 ~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~~~~~GGtG~~~dw~~~~~~~~-~~~~~~LAGGl~~ 162 (205)
T d1nsja_ 91 CRKIA----ERIL--VIKAVGVSNERDMERA-LNYREFPILLDTKTPEYGGSGKTFDWSLILPYRD-RFRYLVLSGGLNP 162 (205)
T ss_dssp HHHHH----TTSE--EEEEEEESSHHHHHHH-GGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGG-GSSCEEEESSCCT
T ss_pred Hhhcc----ccee--eeeeccccchHHHHHH-hhcccceeeeccccccCCCCCcccchhhcccchh-cccceeeecCCCH
Confidence 55543 2212 2556666677777777 566667776644322222222 1 22222 2358999999999
Q ss_pred cChHHHHH-cCCcEEEEeecc
Q 002437 247 VDVSKFLK-SGASGFVISLED 266 (921)
Q Consensus 247 ~~~~~~~~-~Ga~gva~~~a~ 266 (921)
+|+.++.+ .+..||=+++..
T Consensus 163 ~Nv~~ai~~~~p~gvDvsSgv 183 (205)
T d1nsja_ 163 ENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp TTHHHHHHHHCCSEEEESGGG
T ss_pred HHHHHHHHHhCCCEEEEcCcc
Confidence 99998775 899999765544
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=92.36 E-value=0.031 Score=55.47 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||+++|.|-.
T Consensus 32 Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3479999999999999999999963
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=92.35 E-value=0.082 Score=52.99 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=37.9
Q ss_pred ccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh----cCCeE-EEEEeCCCCCCC
Q 002437 436 EMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ----WKKKV-VFVLNKSDLYQN 506 (921)
Q Consensus 436 ~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~----~~~~v-ivVlNK~D~~~~ 506 (921)
+++++|||+....... ...-....||.+++|++.+......-..+++.+.. .+.++ -+|+|+.+....
T Consensus 117 D~viiD~p~~~~~~~~---~~~~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~ 189 (269)
T d1cp2a_ 117 DYVFYDVLGDVVCGGF---AMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE 189 (269)
T ss_dssp SEEEEEEECSSCSTTT---THHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC
T ss_pred CEEEeccCCccchhHH---HHHHHhhccCceeeccchhhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc
Confidence 6899999874322111 12223356899999988763222222234443332 22333 478899987654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.35 E-value=0.033 Score=54.98 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34579999999999999999999964
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=92.10 E-value=0.037 Score=54.67 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.=.++++|+.|||||||++.|.|-.
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3479999999999999999999964
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=92.05 E-value=0.027 Score=55.28 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..=.++++|+.|||||||++.|.|-.
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 33479999999999999999999964
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=91.97 E-value=0.036 Score=54.83 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
+.-.++++|+.|||||||+|.|.|..
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999999974
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=91.96 E-value=0.028 Score=55.46 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.=.++++|+.|||||||++.|.|-
T Consensus 25 Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 25 GEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp TCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 447999999999999999999994
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=91.92 E-value=0.038 Score=54.54 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34578999999999999999999953
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.77 E-value=0.042 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.++++|+.|||||||++.|.|-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 56799999999999999999963
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.77 E-value=0.049 Score=50.44 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
...+.|.++|.+||||||+-++|..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988863
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=91.69 E-value=0.025 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++|+|++|||||||++.|+|-.
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 44589999999999999999999853
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.48 E-value=0.18 Score=51.67 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=34.8
Q ss_pred hhhhhcC-CCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 228 NSLFTNV-KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 228 ~~~~~~~-~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..+++.. .+||++.||| +.+++.+.+.+||+.|-|.++.+..
T Consensus 247 ~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~ 290 (312)
T d1gtea2 247 TTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQ 290 (312)
T ss_dssp HHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred HHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhcc
Confidence 4555555 4999999999 6889999999999999998887653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=91.46 E-value=0.044 Score=54.88 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..-.++++|+.|||||||+++|.|-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 44589999999999999999999853
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.46 E-value=0.044 Score=54.79 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
.-.++++|+.|||||||++.|.|-.
T Consensus 30 Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 30 GDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3478999999999999999999963
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.35 E-value=0.057 Score=51.15 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.|+.|+|+|.+||||||+.+.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998853
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=91.33 E-value=0.53 Score=45.38 Aligned_cols=161 Identities=11% Similarity=0.018 Sum_probs=94.6
Q ss_pred chHHHHHHHHhcCCcEEEEeC------CCCCHHHHHHHHHHHHHHhhc--CceEEecCcHHH---HHhCCCCe--EEcCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNG------GEASGKSVYEAACLLKSVVKD--RALFLIAERVDI---AAAVNASG--VLLSD 166 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~------k~~~~~~~~~~a~~l~~~~~~--~~~~ivnd~~dl---a~~~~a~G--vHL~~ 166 (921)
.+.+.++++.+.|++++|+-- |+.+- -.+..+.++..+.. .+-+++.+.... ....|++- +|...
T Consensus 15 ~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~t~--~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H~E~ 92 (220)
T d1h1ya_ 15 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTI--GAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEV 92 (220)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCB--CHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHHHcCCCEEEEeeecCcccccccc--CchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceeeecccc
Confidence 777889888899999999972 22221 12344555555543 567788775443 33457774 67754
Q ss_pred CCCCHH-HHHHhcccCCCCccccCeEEEec--C-CHHHHHcccc-cCCCCEEEeCCCCCCCCC-------cc-hhhhhh-
Q 002437 167 QGLPAI-VARNTMKDSMSESVVLPLVGRNV--Q-TLDAAFNASS-SEGADFLVCCFGEGQKAD-------VI-ENSLFT- 232 (921)
Q Consensus 167 ~~l~~~-~~r~~~~~~~~~~~~~~~ig~S~--h-~~~e~~~A~~-~~gaDyv~~gpvTk~~~g-------~~-~~~~~~- 232 (921)
..-+.. ....+.. .. . -.|... + +.+.+..--. ...+||+++-.|.....| +. .+++++
T Consensus 93 ~~~~~~~~i~~i~~---~g-~---~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~ 165 (220)
T d1h1ya_ 93 SRDNWQELIQSIKA---KG-M---RPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKK 165 (220)
T ss_dssp CTTTHHHHHHHHHH---TT-C---EEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHH
T ss_pred cchhHHHHHHHHHH---cC-C---CcceeeccccchhHHHHHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHhc
Confidence 322222 1222111 11 1 244444 3 3443332201 135899988766222222 11 244544
Q ss_pred cCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 233 NVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 233 ~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..++++-+=|||+.+|+..+.++||+.+++-++.++.
T Consensus 166 ~~~~~I~VDGGIn~~~i~~l~~aGad~~V~GS~if~~ 202 (220)
T d1h1ya_ 166 YPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGA 202 (220)
T ss_dssp CTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred CCCceEEEEecCCHHHHHHHHHCCCCEEEECHHHHCC
Confidence 3358888899999999999999999999887776553
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=91.26 E-value=0.37 Score=49.23 Aligned_cols=68 Identities=13% Similarity=0.020 Sum_probs=51.2
Q ss_pred HHH-HHcccccCCCCEEEeCCC----CCCCCCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHH-HcCCcEEEEeecc
Q 002437 198 LDA-AFNASSSEGADFLVCCFG----EGQKADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFL-KSGASGFVISLED 266 (921)
Q Consensus 198 ~~e-~~~A~~~~gaDyv~~gpv----Tk~~~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~-~~Ga~gva~~~a~ 266 (921)
+.+ +..+ .+.|+--+++--| |...+.++ ...+.+.+++||+|.||++ .+++.++. ..|++||++.++-
T Consensus 222 l~~~i~~~-~~~G~GEIlltdIdrDGt~~G~D~el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~ 297 (323)
T d1jvna1 222 VWELTRAC-EALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 297 (323)
T ss_dssp HHHHHHHH-HHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred HHHHhhhh-hccCcceeEEEeecccccccccchhHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHH
Confidence 444 5556 7899999999888 33444454 5788888999999999995 77887765 5679999765554
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.16 E-value=0.052 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..|+++|.+||||||+.+.|...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999753
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=91.13 E-value=0.1 Score=50.03 Aligned_cols=173 Identities=14% Similarity=0.019 Sum_probs=98.8
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhcC---ceEEecCc----HHHHHhCCC
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKDR---ALFLIAER----VDIAAAVNA 159 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~~---~~~ivnd~----~dla~~~~a 159 (921)
.|.+-.|.. +..+.++.++. +..+++++-+--+-. ...=.+..+++++.+... ..+.++|- ...+.+.||
T Consensus 3 ~l~vAlD~~-~~~~~~~~~~~-~~~~vdiikig~~~~-~~~G~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~ga 79 (213)
T d1q6oa_ 3 MLQVALDNQ-TMDSAYETTRL-IAEEVDIIEVGTILC-VGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANA 79 (213)
T ss_dssp EEEEEECCS-SHHHHHHHHHH-HGGGCSEEEECHHHH-HHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTC
T ss_pred cEEEEecCC-CHHHHHHHHHh-cCCCccEEEeCeecc-ccCCHHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcCC
Confidence 566655642 22355566554 577899988732110 000123456666666431 12233443 345667899
Q ss_pred CeEEcCCCCCC--HHHH---HHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--C--C-CCCCcc-hh
Q 002437 160 SGVLLSDQGLP--AIVA---RNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--E--G-QKADVI-EN 228 (921)
Q Consensus 160 ~GvHL~~~~l~--~~~~---r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--T--k-~~~g~~-~~ 228 (921)
|++.+-...-+ ...+ .+-.| ..+++...+.++.+..... ...++|++++... + . ...... ..
T Consensus 80 d~vtvh~~~g~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 152 (213)
T d1q6oa_ 80 DWVTVICCADINTAKGALDVAKEFN------GDVQIELTGYWTWEQAQQW-RDAGIGQVVYHRSRDAQAAGVAWGEADIT 152 (213)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHTT------CEEEEEECSCCCHHHHHHH-HHTTCCEEEEECCHHHHHTTCCCCHHHHH
T ss_pred CEEEEeccCCchHHHHHHHHHHHcC------CceecccCCCCCHHHHHHH-HHhHHHHHHHHHhcccCcCCeeCCHHHHH
Confidence 99665322111 1111 11122 1112334555788888877 6889999987654 1 1 111111 12
Q ss_pred hh--hhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 229 SL--FTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 229 ~~--~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.+ .....+|+..-||++++++.++.++||+++.+.++..+.
T Consensus 153 ~i~~~~~~~~~i~~~gGi~~~~~~~~~~~Gad~iVVGr~I~~a 195 (213)
T d1q6oa_ 153 AIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDA 195 (213)
T ss_dssp HHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTS
T ss_pred HHHHhhccCceEecCCCcCcCCHHHHHHcCCCEEEEChhhcCC
Confidence 22 224578999999999999999999999999888777654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.09 E-value=0.039 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.|+++|++||||||+++.|...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999865
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.01 E-value=0.052 Score=50.57 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 002437 365 FLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLl 385 (921)
..|+|.|.+||||||+++.|.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999985
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.063 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=20.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
|+.|+|+|++||||||....|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999998864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.81 E-value=0.059 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
++|+|+|+|||||||+.+.|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.63 E-value=0.037 Score=54.70 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGKR 388 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~~ 388 (921)
..=.++++|+.|||||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 34589999999999999999999964
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=90.60 E-value=0.05 Score=56.46 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..|+|+|.+|||||||+|+|++.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEeeccccchHHHHHHhhh
Confidence 46899999999999999999963
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.58 E-value=0.042 Score=51.76 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=25.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHCCC--CCCCCCCCcccee
Q 002437 366 LLVIVGEYNSGKSSVINALLGKR--YLKDGVVPTTNEI 401 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~~--~~~~~~~~tT~~~ 401 (921)
.|+++|++|+|||||++.|+... .+......||..+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~ 42 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 42 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCC
Confidence 48889999999999999998543 2223344555543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.39 E-value=0.043 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..|+++|++|+|||||++.|+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999865
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=90.32 E-value=0.63 Score=45.41 Aligned_cols=123 Identities=10% Similarity=0.036 Sum_probs=77.0
Q ss_pred CceEEecC----c--HHHHHhCCCCeEEcCCCCCCHHHHHHhcccCCCCccccCeEEEecCCHHHHHccccc-CCCCEEE
Q 002437 142 RALFLIAE----R--VDIAAAVNASGVLLSDQGLPAIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSS-EGADFLV 214 (921)
Q Consensus 142 ~~~~ivnd----~--~dla~~~~a~GvHL~~~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~-~gaDyv~ 214 (921)
..++|-.| . +.-|..+|||.|-|=..-++......+......-+. =+=+-|||.+|+.+| .. .|++.++
T Consensus 101 ~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl---e~LvEvh~~~El~~a-l~~~~a~iiG 176 (251)
T d1i4na_ 101 CRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGM---DSLVEVHSREDLEKV-FSVIRPKIIG 176 (251)
T ss_dssp CSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTC---EEEEEECSHHHHHHH-HTTCCCSEEE
T ss_pred cCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCC---eeecccCCHHHHHHH-hcccccceee
Confidence 55655444 2 445667899999997777764444333210000001 133568999999998 54 5799999
Q ss_pred eCCC--CCCCCCcc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 215 CCFG--EGQKADVI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 215 ~gpv--Tk~~~g~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
+--- ..-..++. ...+...+ +.++++-+|| +++++..+ ++|+++|-|-.+.|+.
T Consensus 177 INnRdL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~ 236 (251)
T d1i4na_ 177 INTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKA 236 (251)
T ss_dssp EECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHC
T ss_pred eeecchhccchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCC
Confidence 8654 11112222 23444444 4678999999 68888876 5799999887777764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.23 E-value=0.063 Score=53.63 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=23.3
Q ss_pred cCCCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 360 QIDEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 360 ~~~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..+.|..|.+.|+||+|||||..+|.+.
T Consensus 28 ~~~~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 28 AVESPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445667899999999999999999764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.23 E-value=0.082 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.+..++++|.+||||||+.+.|..
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788899999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.12 E-value=0.074 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
++|+|+|+|||||||+...|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.14 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLl 385 (921)
...|+.|+|.|.++||||||.+.|.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3468999999999999999988874
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.86 E-value=0.1 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
...|+++|.+||||||+.+.|...
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.79 E-value=0.092 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..++|+++|+|||||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.76 E-value=0.067 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..|+.|+|-|..||||||+++.|..
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999865
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.72 E-value=0.086 Score=49.22 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
++|+|+|++||||||..+.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988863
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.51 E-value=0.066 Score=49.40 Aligned_cols=21 Identities=38% Similarity=0.325 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 002437 365 FLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLl 385 (921)
|+|+++|.+||||||+-..|.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 568899999999999998885
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=89.26 E-value=0.099 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHCC
Q 002437 365 FLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..|.+.|.+||||||+.++|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46888899999999999999764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.083 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHCC
Q 002437 366 LLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.|+++|++|+||||+-..|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.14 E-value=0.097 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.98 E-value=0.12 Score=48.99 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
+..+.|+++|++||||||+...|...
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999754
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.93 E-value=0.079 Score=50.27 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.+..|.++|+|||||||+...|...
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.77 E-value=0.11 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.++|+|+|++||||||+...|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999964
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.48 E-value=0.13 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..++|+++|+|||||||+...|...
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998753
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=88.40 E-value=1.1 Score=46.61 Aligned_cols=163 Identities=13% Similarity=0.000 Sum_probs=89.3
Q ss_pred EEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHhhc-CceEEecCcHHHHH---hCCCCeEEcC
Q 002437 90 LEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEASGKSVYEAACLLKSVVKD-RALFLIAERVDIAA---AVNASGVLLS 165 (921)
Q Consensus 90 lit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~ivnd~~dla~---~~~a~GvHL~ 165 (921)
+|+.+-..-.+.--.+.-+-.+|+.+++ +..+.++..+........... ......++..+.+. ..+++-+-+-
T Consensus 53 IIsAnMDTVt~~~mA~~la~~Gglgvih---R~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~ID 129 (362)
T d1pvna1 53 LVSAIMQSVSGEKMAIALAREGGISFIF---GSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCID 129 (362)
T ss_dssp EEECSCTTTCSHHHHHHHHHTTCEEEEC---CSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEEC
T ss_pred EEecCCCCcCCHHHHHHHHHCCCEEEEe---ecCCHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCceEEeec
Confidence 5555532222322223334356666663 455665544443333332222 22333344444443 3466655443
Q ss_pred CCCCC-------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeC--CC----CC--CCCCcc-h--
Q 002437 166 DQGLP-------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCC--FG----EG--QKADVI-E-- 227 (921)
Q Consensus 166 ~~~l~-------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~g--pv----Tk--~~~g~~-~-- 227 (921)
-..-. ....|.... +. . .+++-.+.+.+.++.. ...|||+|-+| |- |. ...|.. .
T Consensus 130 vAhG~~~~v~~~i~~ir~~~~---~~-~--~IiAGNVaT~e~~~~L-~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sA 202 (362)
T d1pvna1 130 SSDGFSEWQKITIGWIREKYG---DK-V--KVGAGNIVDGEGFRYL-ADAGADFIKIGIGGGSICITREQKGIGRGQATA 202 (362)
T ss_dssp CSCCCBHHHHHHHHHHHHHHG---GG-S--CEEEEEECSHHHHHHH-HHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHH
T ss_pred hhccchhHHHHHHHHHHHhhc---cc-e--eeecccccCHHHHHHH-HHhCCcEEEecccccccccchhhhccCCchHHH
Confidence 32221 223344332 22 1 3677789999988888 78899999777 42 22 233433 2
Q ss_pred -hhh---hh------cCCCCEEEEcCC-CccChHHHHHcCCcEEEE
Q 002437 228 -NSL---FT------NVKIPIFIMNAS-PLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 228 -~~~---~~------~~~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~ 262 (921)
.++ ++ ...+||+|=||| ++.++..++.+||+.|-+
T Consensus 203 v~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~ 248 (362)
T d1pvna1 203 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIML 248 (362)
T ss_dssp HHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceee
Confidence 222 22 236999999999 477999999999999954
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.14 E-value=0.12 Score=48.84 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.3
Q ss_pred EEEEeCCCCCHHHHHHHHHCC
Q 002437 367 LVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~ 387 (921)
|+|+|++||||+||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.078 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..+.|.++|.+||||||+-+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999999853
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=87.99 E-value=0.66 Score=45.20 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=66.4
Q ss_pred cHHHHHhCCCCeEEcCC----CCCCHHHHHHhcccCCCCccccCeEEEecC-------CH-HHHHcccccCCCCEEEeCC
Q 002437 150 RVDIAAAVNASGVLLSD----QGLPAIVARNTMKDSMSESVVLPLVGRNVQ-------TL-DAAFNASSSEGADFLVCCF 217 (921)
Q Consensus 150 ~~dla~~~~a~GvHL~~----~~l~~~~~r~~~~~~~~~~~~~~~ig~S~h-------~~-~e~~~A~~~~gaDyv~~gp 217 (921)
+...+.++|+|||-+|- ..++....+.+.... +-+.++.| ++ +.+... .+.|+|-|+=|=
T Consensus 77 di~~~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a-------~~l~vTFHRAfD~~~d~~~al~~L-i~lG~~rILTSG 148 (247)
T d1twda_ 77 DVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAA-------GPLAVTFHRAFDMCANPLYTLNNL-AELGIARVLTSG 148 (247)
T ss_dssp HHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHH-------TTSEEEECGGGGGCSCHHHHHHHH-HHHTCCEEEECT
T ss_pred HHHHHHHcCCCeEEEEEECCCCCccHHHHHHHHHHh-------cccCeeeehhhhhhCCHHHHHHHH-HhcCCCeEeccC
Confidence 45577888999999973 335566666654211 11344556 43 334455 678999877553
Q ss_pred C-CCCCCCcc-hhhhhhcCCCC-EEEEcCCCccChHHHHHcCCcEE
Q 002437 218 G-EGQKADVI-ENSLFTNVKIP-IFIMNASPLVDVSKFLKSGASGF 260 (921)
Q Consensus 218 v-Tk~~~g~~-~~~~~~~~~~P-v~aiGGi~~~~~~~~~~~Ga~gv 260 (921)
- .....|+. +..+.+..+-+ +.+-|||+++|+..+.++|+.-+
T Consensus 149 g~~~a~~G~~~L~~L~~~a~~~iIm~GgGI~~~Ni~~l~~~g~~e~ 194 (247)
T d1twda_ 149 QKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEV 194 (247)
T ss_dssp TSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEE
T ss_pred CCCchhHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCCEE
Confidence 3 22345665 56666655444 55668999999999999998877
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.44 E-value=0.14 Score=47.63 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 002437 366 LLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLl 385 (921)
.|+|.|.+||||||+++.|.
T Consensus 3 iivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.40 E-value=0.21 Score=48.02 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
-..++.|.|+|.+||||||+-++|..
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999863
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=87.23 E-value=0.84 Score=44.58 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=73.6
Q ss_pred HHHHHhCCCCeEEcCCCCCCHHHHHHhc------ccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC--CCCC
Q 002437 151 VDIAAAVNASGVLLSDQGLPAIVARNTM------KDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG--EGQK 222 (921)
Q Consensus 151 ~dla~~~~a~GvHL~~~~l~~~~~r~~~------~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv--Tk~~ 222 (921)
+.-|..+|||.|-|=..-+.....+.+. | -+ +=+-|||.+|+.+| ...|++.+++-.- +.-.
T Consensus 123 I~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lg---l~------~LVEvh~~~El~~a-~~~~a~iIGINnRnL~tf~ 192 (254)
T d1piia2 123 IYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLE---MG------VLTEVSNEEEQERA-IALGAKVVGINNRDLRDLS 192 (254)
T ss_dssp HHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTT---CE------EEEEECSHHHHHHH-HHTTCSEEEEESEETTTTE
T ss_pred HHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHh---hh------HHHhhccHHHHHHH-HhhcccccCccccchhhhh
Confidence 4566779999999988888765555442 2 12 33578999999999 8999999988543 1111
Q ss_pred CCcc-hhhhhhcC--CCCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 223 ADVI-ENSLFTNV--KIPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 223 ~g~~-~~~~~~~~--~~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..+. ...+.... +..+++-+|| +++++..+ .+|+++|-|-.+.|+.
T Consensus 193 vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~ 242 (254)
T d1piia2 193 IDLNRTRELAPKLGHNVTVISESGINTYAQVREL-SHFANGFLIGSALMAH 242 (254)
T ss_dssp ECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTC
T ss_pred hhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCC
Confidence 1222 23344433 5668888999 57788776 6799999766555554
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=87.22 E-value=0.095 Score=51.74 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=49.7
Q ss_pred HHHHHcccccCCCCEEEeCCC----CCCCCCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHH---cCCcEEEEeecc
Q 002437 198 LDAAFNASSSEGADFLVCCFG----EGQKADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLK---SGASGFVISLED 266 (921)
Q Consensus 198 ~~e~~~A~~~~gaDyv~~gpv----Tk~~~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~---~Ga~gva~~~a~ 266 (921)
.+.+.+. .+.|+..+++-.| |...+.++ ...+.+.+++|+++-||++ .+++..+.+ .|++||++.+|-
T Consensus 148 ~~~~~~~-~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al 224 (239)
T d1vzwa1 148 YETLDRL-NKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL 224 (239)
T ss_dssp HHHHHHH-HHTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred chhhhhh-hhccccEEEEEeecccceecCCcchhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHH
Confidence 4556666 6789988888777 44445555 5778888999999999995 667777655 599999877664
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.11 E-value=0.16 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+|.|+|+|.+||||||+.+.|-.
T Consensus 3 k~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 3 RYIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999998863
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=87.01 E-value=0.35 Score=46.78 Aligned_cols=168 Identities=11% Similarity=-0.029 Sum_probs=99.7
Q ss_pred EcCCCCCCC--chHHHHHHHHhcCCcEEEEeC------CCCCHHHHHHHHHHHHHHhh--c-CceEEecCcHHHHH---h
Q 002437 91 EPHQVLAGG--DALDLIDEAVAKFVGIVVLNG------GEASGKSVYEAACLLKSVVK--D-RALFLIAERVDIAA---A 156 (921)
Q Consensus 91 it~~~~~~~--~~~~~~~~~l~~g~~~vqlR~------k~~~~~~~~~~a~~l~~~~~--~-~~~~ivnd~~dla~---~ 156 (921)
|+|.-++.+ .+.+.++++-+.|++++|+-- |+.+-. ....+.+++.+. . .+-+++.+...... .
T Consensus 5 IspSil~~d~~~l~~~i~~l~~~~~d~iHiDimDG~Fvpn~t~g--~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~ 82 (221)
T d1tqxa_ 5 IAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFG--PPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT 82 (221)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCC--HHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT
T ss_pred eehhhhccCHHHHHHHHHHHHHcCCCEEEEECccCcCcCccccC--hHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhh
Confidence 555433333 777888888899999999973 433311 234556666653 2 57788887655444 3
Q ss_pred CCCCeEEcCCCCCCHHH----HHHhcccCCCCccccCeEEEec--CC-HHHHHccccc-CCCCEEEeCCCCCCCCCc---
Q 002437 157 VNASGVLLSDQGLPAIV----ARNTMKDSMSESVVLPLVGRNV--QT-LDAAFNASSS-EGADFLVCCFGEGQKADV--- 225 (921)
Q Consensus 157 ~~a~GvHL~~~~l~~~~----~r~~~~~~~~~~~~~~~ig~S~--h~-~~e~~~A~~~-~gaDyv~~gpvTk~~~g~--- 225 (921)
.|++-+|+-........ .+..-. .. . .+|.+. ++ .+.+..- .. ..+|||.+-.|.....|.
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~i~~i~~---~g-~---~~Gial~p~t~~~~~~~~-l~~~~~d~vlim~V~pG~~GQ~f~ 154 (221)
T d1tqxa_ 83 SNQLTFHFEALNEDTERCIQLAKEIRD---NN-L---WCGISIKPKTDVQKLVPI-LDTNLINTVLVMTVEPGFGGQSFM 154 (221)
T ss_dssp SSEEEEEGGGGTTCHHHHHHHHHHHHT---TT-C---EEEEEECTTSCGGGGHHH-HTTTCCSEEEEESSCTTCSSCCCC
T ss_pred cCceeEEeehhccccchhhHHHHHHHh---cC-C---eEEEeeccccccccchhh-cccccccEEEEEeecccccccccC
Confidence 56777777433222211 222211 11 1 344444 34 3444332 22 469999887772222221
Q ss_pred ----c-hhhhhhcC-CCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 226 ----I-ENSLFTNV-KIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 226 ----~-~~~~~~~~-~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
. .+++++.. ++.+-+=|||+.+|+..+.++||+.+++-++.++
T Consensus 155 ~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGad~iV~GS~if~ 203 (221)
T d1tqxa_ 155 HDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFN 203 (221)
T ss_dssp GGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHT
T ss_pred cchhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHcCCCEEEEChHHHC
Confidence 1 24555443 4667777999999999999999999987776654
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.13 E-value=11 Score=38.94 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.9
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+-++++||++|+|||+++..|..
T Consensus 43 k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCeEECCCCCCHHHHHHHHHH
Confidence 34567889999999999988764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.98 E-value=0.25 Score=48.10 Aligned_cols=25 Identities=12% Similarity=0.196 Sum_probs=21.3
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..+.+.|.|+||+||||+.++|...
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHhc
Confidence 4557889999999999999998753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.86 E-value=1.4 Score=42.58 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..+.+.+.|++|+||||++.++..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999998864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.77 E-value=0.19 Score=47.53 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHCC
Q 002437 367 LVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 367 I~vvG~~~aGKSTLiNaLlg~ 387 (921)
|+|+|++|+|||||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 779999999999999999753
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.71 E-value=0.86 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.-.++++|++|+|||+++..|..+
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHH
Confidence 457889999999999999998753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=85.61 E-value=0.21 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.+.|+++|..||||||+.+.|-.
T Consensus 2 ~~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 2 TYIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998853
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=85.54 E-value=0.17 Score=46.36 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHC
Q 002437 366 LLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLlg 386 (921)
+|+++|.+||||||+-..|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988853
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=85.53 E-value=0.37 Score=45.55 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 351 VSLLIDAVSQIDEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 351 ~~~l~~~~~~~~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+..+...++.....-.+++.|++++|||+|.++|+.
T Consensus 40 l~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 40 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHH
Confidence 334444556667778999999999999999998864
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=85.31 E-value=1.3 Score=43.74 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH------CCCCCCCCCCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL------GKRYLKDGVVP 396 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl------g~~~~~~~~~~ 396 (921)
.+..|++.|..|+||||+.-.|. |.+++..+..|
T Consensus 19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp 58 (279)
T d1ihua2 19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP 58 (279)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 45677788999999999866552 55665444444
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.31 E-value=0.27 Score=47.92 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.++.+.+.|+||+||||+.+++.+.
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.94 E-value=0.13 Score=51.80 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=17.9
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Q 002437 363 EPFLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLl 385 (921)
.+|.|+|.|.+||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 56799999999999999999874
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=84.66 E-value=0.56 Score=47.05 Aligned_cols=67 Identities=10% Similarity=-0.013 Sum_probs=35.4
Q ss_pred cccEEEeCCCCChhhhHHHHHHHHhcCCCCEEEEEEeCCCCCCHHHHHHHHHhhh----cCCeE-EEEEeCCCCC
Q 002437 435 KEMIIVDTPGTNVILQRQQRLTEEFVPRADLVLFVISADRPLTESEVVFLRYTQQ----WKKKV-VFVLNKSDLY 504 (921)
Q Consensus 435 ~~l~lvDTPG~~~~~~~~~~~~~~~l~~aD~il~V~da~~~~t~~e~~~l~~l~~----~~~~v-ivVlNK~D~~ 504 (921)
.+++++|||+........ ..-....+|.++.++..+......-.++++.+.. ...++ -+|+|+.+..
T Consensus 119 ~D~iiiD~pp~~~~~~~~---~~~~~~~a~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 119 LDFVFYDVLGDVVCGGFA---MPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp CSEEEEEEECSSCCTTTT---HHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred CCeEeeccCCccCHHHHH---HHHHhhccceeecccchhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence 368999998753221110 1112356888888887653222222334443322 22343 3789998754
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=84.43 E-value=2.8 Score=39.98 Aligned_cols=168 Identities=11% Similarity=0.009 Sum_probs=98.0
Q ss_pred EEcCCCCCCC--chHHHHHHHHhcCCcEEEEeC------CCCCHHHHHHHHHHHHHHhhc--CceEEecCcHHHH---Hh
Q 002437 90 LEPHQVLAGG--DALDLIDEAVAKFVGIVVLNG------GEASGKSVYEAACLLKSVVKD--RALFLIAERVDIA---AA 156 (921)
Q Consensus 90 lit~~~~~~~--~~~~~~~~~l~~g~~~vqlR~------k~~~~~~~~~~a~~l~~~~~~--~~~~ivnd~~dla---~~ 156 (921)
.|+|.-++.+ .+.+.++++.++|++++|+-- |+.+-. ....+.++..+.- .+-+++.+..... ..
T Consensus 4 ~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~--~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~ 81 (221)
T d1tqja_ 4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIG--PLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAK 81 (221)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBC--HHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHH
T ss_pred EEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCccccC--cHhHHhhhhccCcceeeeEEEeCHHHHHHHHhh
Confidence 3444433333 777889888899999999954 322211 2245556655543 5778888865444 45
Q ss_pred CCCCe--EEcCCCCCC-H-HHHHHhcccCCCCccccCeEEEec--C-CHHHHHcccccCCCCEEEeCCCCCCCCCc----
Q 002437 157 VNASG--VLLSDQGLP-A-IVARNTMKDSMSESVVLPLVGRNV--Q-TLDAAFNASSSEGADFLVCCFGEGQKADV---- 225 (921)
Q Consensus 157 ~~a~G--vHL~~~~l~-~-~~~r~~~~~~~~~~~~~~~ig~S~--h-~~~e~~~A~~~~gaDyv~~gpvTk~~~g~---- 225 (921)
.|++- +|.-...-+ . .....+-. .. . .+|.+. . +.+.+..- -.-+||+.+=.|++...|.
T Consensus 82 ~g~~~i~~H~E~~~~~~~~~~~~~i~~---~g-~---~~Gial~p~T~~~~l~~~--l~~~d~vlvM~V~pG~~GQ~f~~ 152 (221)
T d1tqja_ 82 AGADIISVHVEHNASPHLHRTLCQIRE---LG-K---KAGAVLNPSTPLDFLEYV--LPVCDLILIMSVNPGFGGQSFIP 152 (221)
T ss_dssp HTCSEEEEECSTTTCTTHHHHHHHHHH---TT-C---EEEEEECTTCCGGGGTTT--GGGCSEEEEESSCC----CCCCG
T ss_pred ccceEEEEeeccccChhhHHHHHHHHH---CC-C---CEEEEecCCCcHHHHHHH--HhhhcEEEEEEecCCCCCcccch
Confidence 56664 677543332 1 12222110 11 1 244433 2 45665553 3458999986663222221
Q ss_pred ---c-hhhh---hh--cCCCCEEEEcCCCccChHHHHHcCCcEEEEeecccc
Q 002437 226 ---I-ENSL---FT--NVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLS 268 (921)
Q Consensus 226 ---~-~~~~---~~--~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~ 268 (921)
. ..++ .. ..++++..=|||+.+|+..+.++||+.+++-++.++
T Consensus 153 ~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~ 204 (221)
T d1tqja_ 153 EVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFN 204 (221)
T ss_dssp GGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHT
T ss_pred hhHHHHHHHHhhhhccccceEEEEECCcCHHHHHHHHHcCCCEEEEChHHhC
Confidence 1 1222 22 346778888999999999999999999987766654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.41 E-value=0.24 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
+.|+|-|..||||||+++.|..
T Consensus 1 mlI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 1 MLIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.19 E-value=0.46 Score=46.67 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
.+..+.|.|++|+||||+++++..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.13 E-value=0.3 Score=49.20 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Q 002437 361 IDEPFLLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 361 ~~~~~~I~vvG~~~aGKSTLiNaLl 385 (921)
-..|+.|+|.|.+|||||||.+.|.
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHH
Confidence 3457899999999999999988764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.98 E-value=0.24 Score=45.60 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.5
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 002437 366 LLVIVGEYNSGKSSVINALL 385 (921)
Q Consensus 366 ~I~vvG~~~aGKSTLiNaLl 385 (921)
.|+++|.+||||||+-+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 36788999999999999884
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=83.90 E-value=0.43 Score=48.58 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=52.9
Q ss_pred ecCCHHH-HHcccccCCCCEEEeCCCCCCC--CCcc----hhhhhhcCCCCEEEEcCC-CccChHHHHH-cCCcEEEEee
Q 002437 194 NVQTLDA-AFNASSSEGADFLVCCFGEGQK--ADVI----ENSLFTNVKIPIFIMNAS-PLVDVSKFLK-SGASGFVISL 264 (921)
Q Consensus 194 S~h~~~e-~~~A~~~~gaDyv~~gpvTk~~--~g~~----~~~~~~~~~~Pv~aiGGi-~~~~~~~~~~-~Ga~gva~~~ 264 (921)
.-.+..+ +... .+.|+|.+.+-+-|... .|.. ...+.+ ++||++-||| +.+++..+++ +|++||-+.+
T Consensus 134 d~~~~~~~~~~l-~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGR 210 (305)
T d1vhna_ 134 EKNEVEEIYRIL-VEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVAR 210 (305)
T ss_dssp SSCCHHHHHHHH-HHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESG
T ss_pred ccchhhHHHHHH-HHhCCcEEEechhhhhhccccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehhH
Confidence 3344433 4455 67899999998876432 2222 233433 6999999999 5777887764 7999999999
Q ss_pred cccccch
Q 002437 265 EDLSLFN 271 (921)
Q Consensus 265 a~~~~~~ 271 (921)
+++..+|
T Consensus 211 gal~nP~ 217 (305)
T d1vhna_ 211 GAIGRPW 217 (305)
T ss_dssp GGTTCTT
T ss_pred HHHHhhh
Confidence 9998766
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=83.52 E-value=0.9 Score=42.98 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=50.0
Q ss_pred eEEE-ecCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEE
Q 002437 190 LVGR-NVQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 190 ~ig~-S~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~ 262 (921)
+||+ ++.|.+++.+| .+.||||++ +|.+. .+.-+.+...++|++ -|..|+..+..++++|++.+=+
T Consensus 63 ~vGaGTV~~~~~~~~a-~~aGa~fiv-sP~~~----~~v~~~~~~~~i~~i-PGv~TpsEi~~A~~~G~~~lK~ 129 (202)
T d1wa3a1 63 IIGAGTVTSVEQCRKA-VESGAEFIV-SPHLD----EEISQFCKEKGVFYM-PGVMTPTELVKAMKLGHTILKL 129 (202)
T ss_dssp EEEEESCCSHHHHHHH-HHHTCSEEE-CSSCC----HHHHHHHHHHTCEEE-CEECSHHHHHHHHHTTCCEEEE
T ss_pred EEEecccccHHHHHHH-HhhcccEEe-CCCCc----HHHHHHHHhcCCcee-CCcCcHHHHHHHHHCCCCEEEe
Confidence 6776 77999999999 899999974 66521 112344555577644 5888999999999999999954
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.27 E-value=0.46 Score=46.71 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.+..|.+.|++|+|||++.++|...
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhhc
Confidence 3456999999999999999999753
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=82.95 E-value=0.22 Score=48.95 Aligned_cols=69 Identities=9% Similarity=-0.006 Sum_probs=52.5
Q ss_pred CHHH-HHcccccCCCCEEEeCCC----CCCCCCcc-hhhhhhcCCCCEEEEcCCC-ccChHHHHHcC------CcEEEEe
Q 002437 197 TLDA-AFNASSSEGADFLVCCFG----EGQKADVI-ENSLFTNVKIPIFIMNASP-LVDVSKFLKSG------ASGFVIS 263 (921)
Q Consensus 197 ~~~e-~~~A~~~~gaDyv~~gpv----Tk~~~g~~-~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~G------a~gva~~ 263 (921)
++.+ +.+. .+.|+..+++-.| |...++++ ...+.+..++||++-||++ .+++..+.+.| ++||++.
T Consensus 145 ~~~~~~~~~-~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG 223 (241)
T d1qo2a_ 145 DPVSLLKRL-KEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVG 223 (241)
T ss_dssp CHHHHHHHH-HTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred ehhHHHHHh-hccccceEEEeehhhhhhccccchhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEH
Confidence 4444 5566 7889999999887 55566665 5778888999999999995 77798887755 8888766
Q ss_pred ecc
Q 002437 264 LED 266 (921)
Q Consensus 264 ~a~ 266 (921)
+|-
T Consensus 224 ~al 226 (241)
T d1qo2a_ 224 RAF 226 (241)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=82.44 E-value=0.33 Score=46.37 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.1
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 364 PFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 364 ~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
.|.|+|.|++||||||+-..|..+
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=82.40 E-value=0.98 Score=44.25 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHCC
Q 002437 362 DEPFLLVIVGEYNSGKSSVINALLGK 387 (921)
Q Consensus 362 ~~~~~I~vvG~~~aGKSTLiNaLlg~ 387 (921)
..+.-|.+.|++|+|||++.+++.+.
T Consensus 40 ~~~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 40 RIPKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCChhHHHHHHHHH
Confidence 34557999999999999999999864
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=82.19 E-value=1.3 Score=43.66 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=91.2
Q ss_pred eEEEEcCCCCCCCchHHHHHHHHhcCCcEEEEeCCCCC---------------------HHHHHHHHHHHHHHhhcCceE
Q 002437 87 VLQLEPHQVLAGGDALDLIDEAVAKFVGIVVLNGGEAS---------------------GKSVYEAACLLKSVVKDRALF 145 (921)
Q Consensus 87 ~lylit~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~---------------------~~~~~~~a~~l~~~~~~~~~~ 145 (921)
--|+..... +.+..++.+.. +..|+++|-|=-|-.+ .....+.++++++-+ ..++
T Consensus 19 i~yitaG~P-~~~~~~~~l~~-l~~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~--~~pi 94 (271)
T d1ujpa_ 19 IPYLTAGFP-SREGFLQAVEE-VLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALT--EKPL 94 (271)
T ss_dssp EEEEETTSS-CHHHHHHHHHH-HGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--CSCE
T ss_pred EEEEeCcCC-CHHHHHHHHHH-HHcCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhccc--CCcE
Confidence 456666532 22355666655 4668999888665443 233444444444433 4566
Q ss_pred EecC------------cHHHHHhCCCCeEEcCCCCCCHHHH-------HHhcccCCCCccccCeEEEecCCHHHHHccc-
Q 002437 146 LIAE------------RVDIAAAVNASGVLLSDQGLPAIVA-------RNTMKDSMSESVVLPLVGRNVQTLDAAFNAS- 205 (921)
Q Consensus 146 ivnd------------~~dla~~~~a~GvHL~~~~l~~~~~-------r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~- 205 (921)
++=. ...-|.+.|+||+-+.+ +|..++ +.. | -+ .+.+++- +++.+-+...+
T Consensus 95 vlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipD--LP~ee~~~~~~~~~~~-g---l~--~I~lvsP-tT~~eRi~~i~~ 165 (271)
T d1ujpa_ 95 FLMTYLNPVLAWGPERFFGLFKQAGATGVILPD--LPPDEDPGLVRLAQEI-G---LE--TVFLLAP-TSTDARIATVVR 165 (271)
T ss_dssp EEECCHHHHHHHCHHHHHHHHHHHTCCEEECTT--CCGGGCHHHHHHHHHH-T---CE--EECEECT-TCCHHHHHHHHT
T ss_pred EEEeechhhhhCCchhHhHHHhhcCceeEeccc--hhhhhHHHHHHHhhcc-c---cc--eeeccCC-CcchHHHHHHHH
Confidence 6532 45567778999999965 453322 221 2 12 2234333 23444333331
Q ss_pred ccCCCCEEE-eCCCCCC----CCCcc--hhhhhhcCCCCEEEEcCCC-ccChHHHHHcCCcEEEEeeccccc
Q 002437 206 SSEGADFLV-CCFGEGQ----KADVI--ENSLFTNVKIPIFIMNASP-LVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 206 ~~~gaDyv~-~gpvTk~----~~g~~--~~~~~~~~~~Pv~aiGGi~-~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
...|.=|++ .-.+|.. +..+. ...+++.+++||++-=||+ ++++..+ .||+||.|-+|.++.
T Consensus 166 ~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~ 235 (271)
T d1ujpa_ 166 HATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRA 235 (271)
T ss_dssp TCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHH
T ss_pred hCcchhhhhcccCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHH
Confidence 234555532 2233433 22333 4778888899988766885 5666654 599999988887765
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=81.77 E-value=5.7 Score=37.94 Aligned_cols=156 Identities=10% Similarity=-0.022 Sum_probs=94.9
Q ss_pred chHHHHHHHHhcCCcEEEEeC------CCCCHHHHHHHHHHHHHHhhc--CceEEecCcHHHHH---hCCCCe--EEcCC
Q 002437 100 DALDLIDEAVAKFVGIVVLNG------GEASGKSVYEAACLLKSVVKD--RALFLIAERVDIAA---AVNASG--VLLSD 166 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~vqlR~------k~~~~~~~~~~a~~l~~~~~~--~~~~ivnd~~dla~---~~~a~G--vHL~~ 166 (921)
.+.+.++.+-++|++++|+-- |+.+-. .+..+.++..+.- .+-+++++...... ..|++- +|.-.
T Consensus 24 ~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~--~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~ 101 (230)
T d1rpxa_ 24 KLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIG--PLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ 101 (230)
T ss_dssp GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC--HHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECST
T ss_pred HHHHHHHHHHHcCCCEEEEeCccCCcCCccccC--hHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEEeccc
Confidence 777888888899999999973 333211 1244555555543 57788888655554 457764 78864
Q ss_pred CCCC-H-H---HHHHhcccCCCCccccCeEEEec--C-CHHHHHcccccCCCCEEEeCCCCCCCCCcc--------hhhh
Q 002437 167 QGLP-A-I---VARNTMKDSMSESVVLPLVGRNV--Q-TLDAAFNASSSEGADFLVCCFGEGQKADVI--------ENSL 230 (921)
Q Consensus 167 ~~l~-~-~---~~r~~~~~~~~~~~~~~~ig~S~--h-~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~--------~~~~ 230 (921)
.+.. . . ..|.. | . -+|... . .++.+..- -.-+|||.+=.|.+-..|.. ..++
T Consensus 102 ~~~~~~~~~i~~ik~~-g------~---k~Gialnp~T~~~~l~~~--l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~ 169 (230)
T d1rpxa_ 102 SSTIHLHRTINQIKSL-G------A---KAGVVLNPGTPLTAIEYV--LDAVDLVLIMSVNPGFGGQSFIESQVKKISDL 169 (230)
T ss_dssp TTCSCHHHHHHHHHHT-T------S---EEEEEECTTCCGGGGTTT--TTTCSEEEEESSCTTCSSCCCCTTHHHHHHHH
T ss_pred cccccHHHHHHHHHHc-C------C---eEEEEeCCCCCHHHHHHH--HhhCCEEEEEEecCCcccchhhhhhHHHHHHH
Confidence 3321 2 2 22332 2 1 234433 3 35555543 34589998755532112211 1222
Q ss_pred ---hh--cCCCCEEEEcCCCccChHHHHHcCCcEEEEeeccccc
Q 002437 231 ---FT--NVKIPIFIMNASPLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 231 ---~~--~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
.. ..++.+.+=|||+.+|+..+.++||+.+++-++.++.
T Consensus 170 ~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~~V~GS~if~~ 213 (230)
T d1rpxa_ 170 RKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp HHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred HHHHHhcCCceEEEEECCcCHHHHHHHHHcCCCEEEEChHHHCC
Confidence 22 3467788889999999999999999999877766543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.67 E-value=2.6 Score=37.96 Aligned_cols=24 Identities=17% Similarity=0.528 Sum_probs=21.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
....|.+.|+-|||||||+..++.
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCccHHHHHHHHHh
Confidence 456889999999999999999874
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=81.63 E-value=0.81 Score=44.79 Aligned_cols=152 Identities=16% Similarity=0.005 Sum_probs=88.6
Q ss_pred chHHHHHHHHhcCCcEE-EEeCCCC---CHHHHHHHHHHHHHHhhcCceEEecCc------HHHHHhCCCCeEEcCCCCC
Q 002437 100 DALDLIDEAVAKFVGIV-VLNGGEA---SGKSVYEAACLLKSVVKDRALFLIAER------VDIAAAVNASGVLLSDQGL 169 (921)
Q Consensus 100 ~~~~~~~~~l~~g~~~v-qlR~k~~---~~~~~~~~a~~l~~~~~~~~~~ivnd~------~dla~~~~a~GvHL~~~~l 169 (921)
+..+....-.++|+..+ .|=++.. +-.. . ..++..+ ..+++-.|. +.-|..+|||+|-|-..-+
T Consensus 66 dp~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~d-l---~~v~~~~--~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall 139 (254)
T d1vc4a_ 66 DPVEAALAYARGGARAVSVLTEPHRFGGSLLD-L---KRVREAV--DLPLLRKDFVVDPFMLEEARAFGASAALLIVALL 139 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCSSSCCCHHH-H---HHHHHHC--CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHH
T ss_pred CHHHHHHHHHhcCCceEEEEcCcccccccHHH-H---HHHHHHc--CCCcccCCccccHHHHHHHHhccchHHHHHHHHH
Confidence 33455555557887654 4444432 2222 2 2222222 456665553 4566678999998743211
Q ss_pred C------HHHHHHhcccCCCCccccCeEEEecCCHHHHHcccccCCCCEEEeCCC---CC-CCCCcc--hhhhhhc--CC
Q 002437 170 P------AIVARNTMKDSMSESVVLPLVGRNVQTLDAAFNASSSEGADFLVCCFG---EG-QKADVI--ENSLFTN--VK 235 (921)
Q Consensus 170 ~------~~~~r~~~~~~~~~~~~~~~ig~S~h~~~e~~~A~~~~gaDyv~~gpv---Tk-~~~g~~--~~~~~~~--~~ 235 (921)
+ ...|.. +| -+ +=+-+||.+|+.+| ...|++.+++--- |- ...+.. ...+... .+
T Consensus 140 ~~~l~~l~~~A~~-lg---l~------~LVEvh~~~El~~a-~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~ 208 (254)
T d1vc4a_ 140 GELTGAYLEEARR-LG---LE------ALVEVHTERELEIA-LEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFG 208 (254)
T ss_dssp GGGHHHHHHHHHH-HT---CE------EEEEECSHHHHHHH-HHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH-hC---Cc------eEEEeccHHHHhhh-hcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCC
Confidence 1 112222 22 12 34578999999999 8999999998653 11 122211 1233333 25
Q ss_pred CCEEEEcCC-CccChHHHHHcCCcEEEEeeccccc
Q 002437 236 IPIFIMNAS-PLVDVSKFLKSGASGFVISLEDLSL 269 (921)
Q Consensus 236 ~Pv~aiGGi-~~~~~~~~~~~Ga~gva~~~a~~~~ 269 (921)
..+++-+|| +++++..+ ++|++||-|-.+.|+.
T Consensus 209 ~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~~ 242 (254)
T d1vc4a_ 209 GVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRA 242 (254)
T ss_dssp SEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHTS
T ss_pred CEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcCC
Confidence 668889999 67788776 5799999876666664
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.62 E-value=0.57 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.7
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 363 EPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 363 ~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..+.+.+.|++|+||||++.++..
T Consensus 44 ~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 44 SMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345688999999999999998875
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=81.54 E-value=5.2 Score=38.86 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCcEEEEeCCCC--CHHHHHHHHHHHHHHhhc-CceEEe----cCcHH--HHHhCCCCeEEcCCCCCCHHH
Q 002437 103 DLIDEAVAKFVGIVVLNGGEA--SGKSVYEAACLLKSVVKD-RALFLI----AERVD--IAAAVNASGVLLSDQGLPAIV 173 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k~~--~~~~~~~~a~~l~~~~~~-~~~~iv----nd~~d--la~~~~a~GvHL~~~~l~~~~ 173 (921)
..++-+...|.++|.+-.-+. +..+ +..+...|+. |...+| ++... -++..||+||-++.-+- ..+
T Consensus 28 ~~~ei~a~~G~Dfv~iD~EHg~~~~~~----~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~LD~Ga~GIivP~v~s-~ee 102 (253)
T d1dxea_ 28 ISTEVLGLAGFDWLVLDGEHAPNDIST----FIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVET-KEE 102 (253)
T ss_dssp HHHHHHTTSCCSEEEEESSSSSCCHHH----HHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCS-HHH
T ss_pred HHHHHHHcCCCCEEEEecccCCCChhH----HHHHHHHHhccCCCceecCCCCCHHHHHHHHhcCccEEEecccCC-HHH
Confidence 555556689999999987553 4333 3455566666 766665 44444 34557999998876552 334
Q ss_pred HHHhccc--CCCCc-------------------------cccCeEEEecCCHHHHHcc---cccCCCCEEEeCCC--C--
Q 002437 174 ARNTMKD--SMSES-------------------------VVLPLVGRNVQTLDAAFNA---SSSEGADFLVCCFG--E-- 219 (921)
Q Consensus 174 ~r~~~~~--~~~~~-------------------------~~~~~ig~S~h~~~e~~~A---~~~~gaDyv~~gpv--T-- 219 (921)
|+....- +-|.+ . .++.+-.-+.+.+..+ +.-.|.|.+++||- +
T Consensus 103 a~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~--~~vi~~IEt~~av~nleeI~av~giD~i~iGp~DLs~s 180 (253)
T d1dxea_ 103 AELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKN--ITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAA 180 (253)
T ss_dssp HHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTS--CEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHHHH
T ss_pred HHHHHHhheeCCCCCcCcCcceeccccccccccccccccc--eEEEeecccHHHHHHHHHHhccCCCceEEEecCcHHhh
Confidence 4433210 00000 0 1345555555444431 03589999999996 1
Q ss_pred --C----CCCCcc-----hhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEe
Q 002437 220 --G----QKADVI-----ENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVIS 263 (921)
Q Consensus 220 --k----~~~g~~-----~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~ 263 (921)
. .|+.+. ..+.++...+|+-...+ +++++....+.|++.+++.
T Consensus 181 lG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~-~~~~~~~~~~~G~~~i~~g 234 (253)
T d1dxea_ 181 LGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAP-VEADARRYLEWGATFVAVG 234 (253)
T ss_dssp TTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECC-SHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecC-CHHHHHHHHHcCCCEEEeh
Confidence 1 123222 13556667888866544 6899999999999988653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.65 E-value=0.61 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHC
Q 002437 365 FLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 365 ~~I~vvG~~~aGKSTLiNaLlg 386 (921)
..|+|.|+.|+|||||++.++.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999998864
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=80.54 E-value=2.6 Score=39.96 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=51.1
Q ss_pred eEEEe-cCCHHHHHcccccCCCCEEEeCCCCCCCCCcchhhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEEeec
Q 002437 190 LVGRN-VQTLDAAFNASSSEGADFLVCCFGEGQKADVIENSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVISLE 265 (921)
Q Consensus 190 ~ig~S-~h~~~e~~~A~~~~gaDyv~~gpvTk~~~g~~~~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~~~a 265 (921)
.+|+- +-|.+++.+| .+.||||+ ++|.+ ..+.-..+...++|++ -|..|+..+..++++|++.+=+--|
T Consensus 68 ~vGaGTV~~~~~~~~a-~~aGa~Fi-vSP~~----~~~v~~~a~~~~i~~i-PGv~TpsEi~~A~~~G~~~vKlFPA 137 (213)
T d1wbha1 68 IVGAGTVLNPQQLAEV-TEAGAQFA-ISPGL----TEPLLKAATEGTIPLI-PGISTVSELMLGMDYGLKEFKFFPA 137 (213)
T ss_dssp EEEEESCCSHHHHHHH-HHHTCSCE-EESSC----CHHHHHHHHHSSSCEE-EEESSHHHHHHHHHTTCCEEEETTT
T ss_pred eeeccccccHHHHHHH-HHCCCcEE-ECCCC----CHHHHHHHHhcCCCcc-CCcCCHHHHHHHHHCCCCEEEeccc
Confidence 46654 5799999999 89999995 45551 1113455666788865 4889999999999999999955444
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=80.32 E-value=10 Score=37.64 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCcEEEEeCCCC--CHHHHHHHHHHHHHHhhcCceEEe----cCcHHH--HHhCCCCeEEcCCCCCCHHHH
Q 002437 103 DLIDEAVAKFVGIVVLNGGEA--SGKSVYEAACLLKSVVKDRALFLI----AERVDI--AAAVNASGVLLSDQGLPAIVA 174 (921)
Q Consensus 103 ~~~~~~l~~g~~~vqlR~k~~--~~~~~~~~a~~l~~~~~~~~~~iv----nd~~dl--a~~~~a~GvHL~~~~l~~~~~ 174 (921)
...+-+-..|.++|.+-.-+. +..++......+......+...+| ++...+ ++..||+||-++.-+- ..++
T Consensus 53 ~~~e~~a~~g~D~v~iD~EHg~~~~~~~~~~i~a~~~~~~~~~~~iVRvp~~~~~~I~~~LD~Ga~GIivP~V~s-~eea 131 (299)
T d1izca_ 53 FVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVET-VEEV 131 (299)
T ss_dssp HHHHHHHHTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCC-HHHH
T ss_pred HHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCChHHHHHHHHhCcCeeecccccc-HHHH
Confidence 444555589999999987553 555554444433322222333443 454444 5568999999976553 2333
Q ss_pred HHhc--------ccCC--CC---------cc------cc------CeEEEecCCHHHHHcc---cccCCCCEEEeCCC--
Q 002437 175 RNTM--------KDSM--SE---------SV------VL------PLVGRNVQTLDAAFNA---SSSEGADFLVCCFG-- 218 (921)
Q Consensus 175 r~~~--------~~~~--~~---------~~------~~------~~ig~S~h~~~e~~~A---~~~~gaDyv~~gpv-- 218 (921)
+... |.++ |. .. ++ .++.+-+-+.+-+... +.-.|+|.+++||.
T Consensus 132 ~~~v~~~rypP~G~Rg~~~~~~~~g~~~~~~~~~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GVD~ifiGp~DL 211 (299)
T d1izca_ 132 REFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDY 211 (299)
T ss_dssp HHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHTCTTCCCEEECHHHH
T ss_pred HHHHHhhhhccCCCccccccccccccccccccccchhHHhhhcccceeeeecCCHHHHHHHHHHhccccccEEEEcchHH
Confidence 3221 1100 00 00 00 0244444443333221 02479999999995
Q ss_pred --C--CC---------CCCcc--h---hhhhhcCCCCEEEEcCCCccChHHHHHcCCcEEEE
Q 002437 219 --E--GQ---------KADVI--E---NSLFTNVKIPIFIMNASPLVDVSKFLKSGASGFVI 262 (921)
Q Consensus 219 --T--k~---------~~g~~--~---~~~~~~~~~Pv~aiGGi~~~~~~~~~~~Ga~gva~ 262 (921)
+ -+ |+.+. . -+.++...+|+.. +..+++++....+.|+..|++
T Consensus 212 s~slG~~~~~~~g~~~~p~v~~ai~~i~~a~k~~Gk~~g~-~~~~~~~~~~~~~~G~~~i~~ 272 (299)
T d1izca_ 212 MIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRNGVPIFG-GALSVDMVPSLIEQGYRAIAV 272 (299)
T ss_dssp HHHTTCCTTCCTTSCCCHHHHHHHHHHHHHHHHTTCCEEE-ECSSGGGHHHHHHTTEEEEEE
T ss_pred HhhcCCCcccccccccHHHHHHHHHHHHHHHHHcCCcEEe-ccCCHHHHHHHHHcCCCEEEE
Confidence 1 11 11111 1 2445566888765 445899999999999998864
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.07 E-value=1.4 Score=45.76 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=24.4
Q ss_pred HhcCCCCeEEEEEeCCCCCHHHHHHHHHC
Q 002437 358 VSQIDEPFLLVIVGEYNSGKSSVINALLG 386 (921)
Q Consensus 358 ~~~~~~~~~I~vvG~~~aGKSTLiNaLlg 386 (921)
......+..+++.|+||+|||+|.++|.+
T Consensus 148 ~~~~~~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 148 VYNIPKKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HhCCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence 44556677899999999999999999864
|