Citrus Sinensis ID: 002448

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-

MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDSPPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSWPSISSESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGKNYEIPVQSLY

ccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHccHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEEcccccccccccccHHHHcccccEEEEEccccHHHcccccHHHHHHHHHccccccccccccc

ccccHccccccccccccccccEEEEEccEEEEEccccccHcHHcccccccccccccccHHHHHccccccccccccEEcccccccHHHcccccccccHHHcccccccccccccccccccccccccEcccccccEEcccccccHHHHcccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHcccccccccccHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEcccccccccccHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHcccccccccEEEcHHHHHHHHHHHHHHccccccccHHHHHEEccccHccccccccccccccccccEEEEcccccHHHcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccHHHccccEEEEEEEEEcccccccccccccEEEEEEEEEEccccccccccccHHHHHccccEEEEEcccccHHHccccHHHHHHHHHccccEEEEccccc

mslaarfplksnkrtcnidgtnilveepevcicaneSIQWHEllrhpgssqssitpheptehqrvremsgvgktslpephgigleeeiissqdslsstilqsnggirscsgsnseaedsppgckldngsanfqqvgnatLFQDFYscindsslfqeGYHRfkqaedggnfqqesglesidnlgssltFTQLlnfnspqnqvgfssdyephmtSYSELLEaegseiyngecsswpsissesskakNESYARAQqpaedigetmvqqnglstpekmlsaspyvllkkptmqqpnasqtrsppkydqsccdiyqherrtfqcesISIAEQMhhtdlakeqnvpsgsmlAEKTRNLGDDISVAnklsdnkliepnsVEQVLSAHkvydetnpniskskkrkadgekknaIDWESLRKEVQrnsgkqersrdrmdSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHgsidlewlrdvppdkaKDYLLSIRGLGLKSVECVRLLTlhhlafpvdtnvgriavrlgwvplqplpeslqlHLLELYPVLESIQKYLWprlckldqRTLYELHYQLITFGKVfctkskpncnacpmrgecRHFASAFASarlalpgpeeksivsstmptmaernpsvvinpmplpspeksSLAEVRREIgkcepiieepatpeqecteitesdiedafyedpdeiptiKLNIEEFTVNLQSYMQEKMELQECDMSKALvalnpdaasipapklknvsrlrtehqvyelpdshpllegmdrrepddpspyllaiwtpgetansiqlpesrcrskesgklcdektcfscnsmretnsqtvrgtllipcrtamrgsfplngtyfqvnevfadhdsslnpidvprewlwnlprrmvyfGTSVSSIFKGLSTEGIQFCFwkgknyeipvqsly

mslaarfplksnkrtcnidgtniLVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDSPPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSWPSISSESSKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQqpnasqtrsppkyDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKlsdnkliepNSVEQVLSahkvydetnpniskskkrkadgekknaidweslrkevqrnsgkqersrdrmdsldyEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGsidlewlrdvppDKAKDYLLSIRGLGLKSVECVRLLTLHHlafpvdtnVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNpsvvinpmplpspEKSSLAEVRREIGKcepiieepatpeqecTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPdaasipapklknvsrlRTEHQVyelpdshpllegmDRREPDDPSPYLLAIWTPGetansiqlpesrcrskesgklcDEKTCFscnsmretnsqtvrgTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFwkgknyeipvqsly

MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAEDSPPGCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECsswpsissessKAKNESYARAQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVplqplpeslqlhllelypVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECrhfasafasarlalPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGKNYEIPVQSLY

*************RTCNIDGTNILVEEPEVCICANESIQWHELL***************************************************************************************FQQVGNATLFQDFYSCINDSSLFQEGYHRF***********************SLTFTQLLNF**************************************************************************************************************SCCDIYQHERRTFQCESISI*************************************************************************************************************YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASAR*************************************************************************EDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECD***ALVA************************************************YLLAIWTP************************EKTCFSCNSM****SQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGKNYEIP*****

*SLAARF*******************EPEVCICANESI***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFA*********************************************************CEPIIEEPATPE****EITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSY***************LVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPG***********************EKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGKNYEIPVQSL*

MSLAARFPLKSNKRTCNIDGTNILVEEPEVCICANESIQWHELLRH************************VGKTSLPEPHGIGLEEEIISSQDSLSSTILQSN******************GCKLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGLESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGEC*************************EDIGETMVQQNGLSTPEKMLSASPYVLLKKP*****************QSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNP***************NAIDWESLRK****************DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPS*********RREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLP************CDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGKNYEIPVQSLY

******************DGTNILVEEPEVCICANESIQWHELLRHPGSSQSSITPHEPTEHQR*********************************************************GCKLDNGSANFQQVGNATLFQDFYSCINDS**********************************LTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYNGECSSW************************************************************************************************************************************KLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALP***********M*****RNPSVVINPMPLPSP***********IGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGE********************C**KTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGKNYEIPVQSL*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		921	2.2.26 [Sep-21-2011]
Q8LK56		1987	Transcriptional activator	no	no	0.960	0.445	0.555	0.0
Q9SJQ6		1393	Protein ROS1 OS=Arabidops	no	no	0.555	0.367	0.693	0.0
Q9SR66		1332	DEMETER-like protein 2 OS	no	no	0.541	0.374	0.626	0.0
O49498		1044	DEMETER-like protein 3 OS	no	no	0.562	0.496	0.481	1e-137
Q9WYK0		213	Endonuclease III OS=Therm	no	no	0.152	0.657	0.275	2e-06
Q8SRB8		238	Endonuclease III homolog	yes	no	0.150	0.584	0.292	7e-06
P39788		219	Probable endonuclease III	yes	no	0.148	0.625	0.263	0.0001
Q4UK93		213	Endonuclease III OS=Ricke	yes	no	0.153	0.661	0.244	0.0002
Q58829		220	Putative endonuclease MJ1	yes	no	0.172	0.722	0.264	0.0004
Q92GH4		210	Endonuclease III OS=Ricke	yes	no	0.104	0.457	0.263	0.0005

>sp\|Q8LK56\|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2	Back alignment and function desciption

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/933 (55%), Positives = 628/933 (67%), Gaps = 48/933 (5%)

Query: 1    MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
            MSLAARFP K S+ R    +  +++VE+PE CI   NE   W E ++HP   + S     
Sbjct: 1047 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 1106

Query: 59   PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
              E  R    SG+ + +  E     LEEE++SSQDS    I QS G + SCS S S+AE 
Sbjct: 1107 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 1166

Query: 119  SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
                C  K  +G++   Q G+  L  +     N+     EG    ++ E     Q++  L
Sbjct: 1167 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 1226

Query: 177  ESIDNLGSSLTFTQLLNFNSPQNQVGF----SSDYEPHMTSYSELLEAEGSEIYN-GECS 231
            E   N   S+ F Q      P+N   +    SS YE   T    +L+ E   +   G   
Sbjct: 1227 EKTMNWKDSVCFGQ------PRNDTNWQTTPSSSYEQCATRQPHVLDIEDFGMQGEGLGY 1280

Query: 232  SWPSISSESSKAKNESYAR------AQQPAEDIGETMVQQNGLSTPEKM----LSASPYV 281
            SW SIS    + KN++  R         P E  G+ +      STP ++    LS S   
Sbjct: 1281 SWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIP-----STPHELPGMGLSGSSSA 1335

Query: 282  LLKKPTMQQPNASQTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPS 341
            + +     Q N           Q   +   H ++TF  + ++ +E+      + +QN+  
Sbjct: 1336 VQEHQDDTQHN----------QQDEMNKASHLQKTF-LDLLNSSEECLTRQSSTKQNITD 1384

Query: 342  GSMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGE 401
            G +  ++T     D    N    N L+E NS  +  +A + Y ETN  I +  K      
Sbjct: 1385 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVE-YKETNATILREMKGTLADG 1443

Query: 402  KKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAER 461
            KK    W+SLRK+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R
Sbjct: 1444 KKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVR 1503

Query: 462  MKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDT 521
            +KDFL R+V++HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDT
Sbjct: 1504 IKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDT 1563

Query: 522  NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLIT 581
            NVGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQLIT
Sbjct: 1564 NVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLIT 1623

Query: 582  FGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNPSVV 641
            FGKVFCTKS+PNCNACPMRGECRHFASA+ASARLALP PEE+S+ S+T+P   E  P V 
Sbjct: 1624 FGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVA 1683

Query: 642  INPMPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDE 697
            I  + LP P + SLA      RE   CEPIIEEPA+P QECTEITESDIEDA+Y EDPDE
Sbjct: 1684 IPMIELPLPLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDE 1741

Query: 698  IPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQ 757
            IPTIKLNIE+F + L+ +M+  MELQE DMSKALVAL+P   SIP PKLKN+SRLRTEHQ
Sbjct: 1742 IPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQ 1801

Query: 758  VYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTC 817
            VYELPDSH LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C  K SGK+C ++TC
Sbjct: 1802 VYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETC 1861

Query: 818  FSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWL 877
              CNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+
Sbjct: 1862 SECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWI 1921

Query: 878  WNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
            W+LPRR VYFGTSV+SIF+GLSTE IQFCFWKG
Sbjct: 1922 WDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKG 1954

Transcriptional activator involved in gene imprinting. Catalyzes the release of 5-methylcytosine (5-meC) from DNA by a glycosylase/lyase mechanism. Allows the expression of the maternal copy of the imprinted MEA gene before fertilization, possibly by antagonizing or suppressing DNA methylation on target promoter. Probably acts by nicking the MEA promoter. Required for stable reproducible patterns of floral and vegetative development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: -

>sp\|Q9SJQ6\|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2	Back alignment and function description

>sp\|Q9SR66\|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2	Back alignment and function description

>sp\|O49498\|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2	Back alignment and function description

>sp\|Q9WYK0\|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1	Back alignment and function description

>sp\|Q8SRB8\|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1) GN=NTH1 PE=1 SV=1	Back alignment and function description

>sp\|P39788\|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth PE=3 SV=1	Back alignment and function description

>sp\|Q4UK93\|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=nth PE=3 SV=1	Back alignment and function description

>sp\|Q58829\|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1434 PE=3 SV=1	Back alignment and function description

>sp\|Q92GH4\|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=nth PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		921
225449724		2198	PREDICTED: transcriptional activator DEM	0.976	0.409	0.621	0.0
255580114		1876	conserved hypothetical protein [Ricinus	0.953	0.468	0.618	0.0
330370551		2055	DNA N-glycosylase/DNA-(apurinic or apyri	0.965	0.432	0.595	0.0
449512809		1736	PREDICTED: transcriptional activator DEM	0.956	0.507	0.577	0.0
449465553		1679	PREDICTED: transcriptional activator DEM	0.956	0.524	0.577	0.0
297806437		1997	hypothetical protein ARALYDRAFT_487239 [	0.970	0.447	0.559	0.0
296090400		1621	unnamed protein product [Vitis vinifera]	0.553	0.314	0.848	0.0
30680560		1729	transcriptional activator DEMETER [Arabi	0.960	0.511	0.555	0.0
21743571		1729	DEMETER protein [Arabidopsis thaliana]	0.960	0.511	0.555	0.0
145334291		1987	transcriptional activator DEMETER [Arabi	0.960	0.445	0.555	0.0

>gi\|225449724\|ref\|XP_002267310.1\| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1096 bits (2835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/932 (62%), Positives = 684/932 (73%), Gaps = 33/932 (3%)

Query: 1    MSLAARFPL--KSNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGS-SQSSITP 56
            MSL +RFPL  +SNK T   +  +ILVEEPEVCI   +++I+WHE + H    +Q+ +  
Sbjct: 1242 MSLVSRFPLHPESNK-TSYSNEASILVEEPEVCIMNPDDTIKWHEKVSHQQVYNQAFVAY 1300

Query: 57   HEPTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEA 116
             E +EH+R    SG  +TSL        EEE++SSQDS++S+++Q+   +RSCSGSNSEA
Sbjct: 1301 SESSEHRRDSPDSGTSETSLVGAPNQRAEEEVMSSQDSVNSSVVQTTV-LRSCSGSNSEA 1359

Query: 117  EDSPPGCKLD----NGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQ 172
            ED   G K +    + S N   +    + Q+     N SS F E   R+++        Q
Sbjct: 1360 EDPTTGHKTNKVQASASTNILYMEKTFMSQECQYHANKSSNFDENTMRYRK--------Q 1411

Query: 173  ESGLESIDNLGSSLTFTQLLNFNSPQNQVGF--SSDYEPHMTSYSELLEAEGSEIYNGE- 229
               L+ ++N   S + T L+N  +   Q     SS+Y  HMT  S +LE E  ++   E 
Sbjct: 1412 NPRLDRVENHTESSSLTYLINSGNSNKQAPAVPSSNYRLHMTPDSGILEVECLQVLGEES 1471

Query: 230  CSSWPSISSESSKAKNESYAR--AQQPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPT 287
             SSWPS +S  +  K+ ++     QQ  E I +T  QQNGL   ++    +P  LL+   
Sbjct: 1472 ISSWPSAASGIANPKDVNWTSKGTQQMTESIRKTTAQQNGLMNLQEATVGNPNALLRNYP 1531

Query: 288  MQQPNASQTRSPPKYDQSCCDIYQHER-RTFQCES------ISIAEQMHHTDLAKEQNVP 340
            MQQ ++ Q     + D+  C  +  ER +TFQ +S      +  AE +          +P
Sbjct: 1532 MQQ-SSMQPGCTTENDKQSCKNHDLERTKTFQMQSMPSREPLKPAEALDTRRDTTMHQIP 1590

Query: 341  SGSMLAEKTRNLGDDISVANK--LSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKA 398
            +   L E+  N+ +  S  +K    +N+++EP S EQV S++K    T  NI K KK K 
Sbjct: 1591 NVPELTEEASNVRERDSAVDKQICLENEVLEPLSREQVHSSNKESGGTTTNILKPKKEKV 1650

Query: 399  DGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNML 458
            +G KK A DW+SLRK+VQ N  K+ERS+D MDSLDYEA+RCA+V  ISEAIKERGMNNML
Sbjct: 1651 EGTKKKAFDWDSLRKQVQANGRKRERSKDTMDSLDYEAIRCAHVNVISEAIKERGMNNML 1710

Query: 459  AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFP 518
            AER+KDFLNRLVREHGSIDLEWLRD PPDKAKDYLLSIRGLGLKSVECVRLLTLH LAFP
Sbjct: 1711 AERIKDFLNRLVREHGSIDLEWLRDSPPDKAKDYLLSIRGLGLKSVECVRLLTLHQLAFP 1770

Query: 519  VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 578
            VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELHYQ
Sbjct: 1771 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPMLESIQKYLWPRLCKLDQRTLYELHYQ 1830

Query: 579  LITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSSTMPTMAERNP 638
            LITFGKVFCTK KPNCNACPMRGECRHFASAFASARLALP PEEKSIVSST P++A+RNP
Sbjct: 1831 LITFGKVFCTKHKPNCNACPMRGECRHFASAFASARLALPAPEEKSIVSSTAPSVADRNP 1890

Query: 639  SVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEI 698
            +  INP+PLPS E + L +  ++  KCEPIIE PATPE +C E  ESDIEDAFYEDPDEI
Sbjct: 1891 TAFINPIPLPSLESNLLGKEEQDTSKCEPIIEVPATPEPQCIETLESDIEDAFYEDPDEI 1950

Query: 699  PTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQV 758
            PTIKLN EEFT+NLQ+YMQE MELQE DMSKALVAL+P A SIP PKLKNVSRLRTEHQV
Sbjct: 1951 PTIKLNFEEFTLNLQNYMQENMELQEGDMSKALVALDPKATSIPTPKLKNVSRLRTEHQV 2010

Query: 759  YELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCF 818
            YELPDSHPLL+GMD REPDDPSPYLLAIWTPGETANS Q PE RC S+E GKLC+EKTCF
Sbjct: 2011 YELPDSHPLLKGMDIREPDDPSPYLLAIWTPGETANSSQPPERRCESQEPGKLCNEKTCF 2070

Query: 819  SCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLW 878
            SCNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS+NPIDVPR W+W
Sbjct: 2071 SCNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSINPIDVPRAWIW 2130

Query: 879  NLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKG 910
            NLPRR VYFGTSV+SIF+GL TEGIQ+CFW+G
Sbjct: 2131 NLPRRTVYFGTSVTSIFRGLPTEGIQYCFWRG 2162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255580114\|ref\|XP_002530889.1\| conserved hypothetical protein [Ricinus communis] gi\|223529542\|gb\|EEF31495.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|330370551\|gb\|AEC12445.1\| DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|449512809\|ref\|XP_004164145.1\| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449465553\|ref\|XP_004150492.1\| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297806437\|ref\|XP_002871102.1\| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp. lyrata] gi\|297316939\|gb\|EFH47361.1\| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|296090400\|emb\|CBI40219.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|30680560\|ref\|NP_196076.2\| transcriptional activator DEMETER [Arabidopsis thaliana] gi\|332003377\|gb\|AED90760.1\| transcriptional activator DEMETER [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21743571\|gb\|AAM77215.1\| DEMETER protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|145334291\|ref\|NP_001078527.1\| transcriptional activator DEMETER [Arabidopsis thaliana] gi\|108935833\|sp\|Q8LK56.2\|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gi\|84782664\|gb\|ABC61677.1\| DNA glycosylase DEMETER [Arabidopsis thaliana] gi\|332003378\|gb\|AED90761.1\| transcriptional activator DEMETER [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		921
TAIR\|locus:2184432		1987	DME "DEMETER" [Arabidopsis tha	0.972	0.450	0.520	3.7e-229
TAIR\|locus:2044923		1393	DML1 "demeter-like 1" [Arabido	0.555	0.367	0.634	1.1e-183
TAIR\|locus:2100138		1332	DML2 "demeter-like 2" [Arabido	0.557	0.385	0.569	3.4e-154
TAIR\|locus:2124301		1044	DML3 "demeter-like protein 3"	0.562	0.496	0.453	1.4e-116
TAIR\|locus:4515103342		78	AT4G04957 "AT4G04957" [Arabido	0.049	0.589	0.673	2.9e-11
TAIR\|locus:2100382		293	AT3G47830 [Arabidopsis thalian	0.102	0.320	0.425	3.8e-10
TIGR_CMR\|CHY_1121		210	CHY_1121 "endonuclease III" [C	0.085	0.376	0.322	2.1e-05

TAIR\|locus:2184432 DME "DEMETER" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2211 (783.4 bits), Expect = 3.7e-229, P = 3.7e-229
 Identities = 480/922 (52%), Positives = 597/922 (64%)

Query:     1 MSLAARFPLK-SNKRTCNIDGTNILVEEPEVCIC-ANESIQWHELLRHPGSSQSSITPHE 58
             MSLAARFP K S+ R    +  +++VE+PE CI   NE   W E ++HP   + S     
Sbjct:  1047 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHPSDMEVSGVDSG 1106

Query:    59 PTEHQRVREMSGVGKTSLPEPHGIGLEEEIISSQDSLSSTILQSNGGIRSCSGSNSEAED 118
               E  R    SG+ + +  E     LEEE++SSQDS    I QS G + SCS S S+AE 
Sbjct:  1107 SKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSKSDAEF 1166

Query:   119 SPPGC--KLDNGSANFQQVGNATLFQDFYSCINDSSLFQEGYHRFKQAEDGGNFQQESGL 176
                 C  K  +G++   Q G+  L  +     N+     EG    ++ E     Q++  L
Sbjct:  1167 PTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHLYEGSGDVQKQETTNVAQKKPDL 1226

Query:   177 ESIDNLGSSLTFTQLLNFNSPQNQVGFSSDYEPHMTSYSELLEAEGSEIYN-GECXXXXX 235
             E   N   S+ F Q  N  + Q     SS YE   T    +L+ E   +   G       
Sbjct:  1227 EKTMNWKDSVCFGQPRNDTNWQTTP--SSSYEQCATRQPHVLDIEDFGMQGEGLGYSWMS 1284

Query:   236 XXXXXXKAKNESYARAQ-QPAEDIGETMVQQNGLSTPEKMLSASPYVLLKKPTMQQPNAS 294
                   + KN++  R   +    +      Q   STP ++       L    +  Q +  
Sbjct:  1285 ISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHELPGMG---LSGSSSAVQEHQD 1341

Query:   295 QTRSPPKYDQSCCDIYQHERRTFQCESISIAEQMHHTDLAKEQNVPSGSMLAEKT-RNLG 353
              T+   + + +      H ++TF  + ++ +E+      + +QN+  G +  ++T  ++ 
Sbjct:  1342 DTQHNQQDEMNKAS---HLQKTF-LDLLNSSEECLTRQSSTKQNITDGCLPRDRTAEDVV 1397

Query:   354 DDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRK-ADGEKKNAIDWESLR 412
             D +S  + L  N L+E NS  +  +A + Y ETN  I +  K   ADG+K  +  W+SLR
Sbjct:  1398 DPLSNNSSLQ-NILVESNSSNKEQTAVE-YKETNATILREMKGTLADGKKPTS-QWDSLR 1454

Query:   413 KEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE 472
             K+V+ N G+QER+++ MDS+DYEA+R A++ EISEAIKERGMNNMLA R+KDFL R+V++
Sbjct:  1455 KDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKD 1514

Query:   473 HGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGW 532
             HG IDLEWLR+ PPDKAKDYLLSIRGLGLKSVECVRLLTLH+LAFPVDTNVGRIAVR+GW
Sbjct:  1515 HGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGW 1574

Query:   533 VXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKP 592
             V                  VLESIQK+LWPRLCKLDQRTLYELHYQLITFGKVFCTKS+P
Sbjct:  1575 VPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRP 1634

Query:   593 NCNACPMRGECXXXXXXXXXXXXXXPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEK 652
             NCNACPMRGEC              P PEE+S+ S+T+P   E  P V I  + LP P +
Sbjct:  1635 NCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLE 1694

Query:   653 SSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDEIPTIKLNIEEF 708
              SLA      RE   CEPIIEEPA+P QECTEITESDIEDA+Y EDPDEIPTIKLNIE+F
Sbjct:  1695 KSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIEQF 1752

Query:   709 TVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLL 768
              + L+ +M+  MELQE DMSKALVAL+P   SIP PKLKN+SRLRTEHQVYELPDSH LL
Sbjct:  1753 GMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLL 1812

Query:   769 EGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNS 828
             +GMD+REPDDPSPYLLAIWTPGETANS Q PE +C  K SGK+C ++TC  CNS+RE NS
Sbjct:  1813 DGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANS 1872

Query:   829 QTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFG 888
             QTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+W+LPRR VYFG
Sbjct:  1873 QTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFG 1932

Query:   889 TSVSSIFKGLSTEGIQFCFWKG 910
             TSV+SIF+GLSTE IQFCFWKG
Sbjct:  1933 TSVTSIFRGLSTEQIQFCFWKG 1954

GO:0003824 "catalytic activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0019104 "DNA N-glycosylase activity" evidence=ISS;IDA

GO:0043078 "polar nucleus" evidence=IDA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IDA

GO:0006306 "DNA methylation" evidence=RCA;IDA

TAIR\|locus:2044923 DML1 "demeter-like 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2100138 DML2 "demeter-like 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124301 DML3 "demeter-like protein 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:4515103342 AT4G04957 "AT4G04957" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2100382 AT3G47830 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_1121 CHY_1121 "endonuclease III" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		921
pfam00730		144	pfam00730, HhH-GPD, HhH-GPD superfamily base excis	3e-20
COG0177		211	COG0177, Nth, Predicted EndoIII-related endonuclea	1e-19
smart00478		149	smart00478, ENDO3c, endonuclease III	1e-17
cd00056		158	cd00056, ENDO3c, endonuclease III; includes endonu	1e-15
COG2231		215	COG2231, COG2231, Uncharacterized protein related	1e-11
TIGR01083		191	TIGR01083, nth, endonuclease III	2e-09
COG0122		285	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o	3e-05
TIGR00588		310	TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg)	0.002
PRK10702		211	PRK10702, PRK10702, endonuclease III; Provisional	0.002
COG1194		342	COG1194, MutY, A/G-specific DNA glycosylase [DNA r	0.004

>gnl\|CDD\|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein	Back alignment and domain information

 Score = 87.8 bits (218), Expect = 3e-20
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 15/144 (10%)

Query: 416 QRNSGKQ-----ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV 470
           Q+ S K      +R  +R      E L  A+ +E+ E IK  G     A+ +K+    LV
Sbjct: 7   QQTSDKAANKITKRLFERYGFPTPEDLAEADEEELRELIKGLGFYRRKAKYIKELARILV 66

Query: 471 REHGSIDLEWLRDVPPDKAKDY-LLSIRGLGLKSVECVRLLTLHH--LAFPVDTNVGRIA 527
             +          VP D  +   LL++ G+G  + E V L  L    +   VDT+V R+A
Sbjct: 67  EGYLG-------LVPLDLEELEALLALPGVGRWTAEAVLLFALGRPDVFPAVDTHVRRVA 119

Query: 528 VRLGWVPLQPLPESLQLHLLELYP 551
            RLG +  +P  + ++  L EL+P
Sbjct: 120 KRLGLIDTKPPKKEVERELEELWP 143

This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family. Length = 144

>gnl\|CDD\|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|214684 smart00478, ENDO3c, endonuclease III	Back alignment and domain information

>gnl\|CDD\|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases	Back alignment and domain information

>gnl\|CDD\|225140 COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|130155 TIGR01083, nth, endonuclease III	Back alignment and domain information

>gnl\|CDD\|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg)	Back alignment and domain information

>gnl\|CDD\|182661 PRK10702, PRK10702, endonuclease III; Provisional	Back alignment and domain information

>gnl\|CDD\|224115 COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		921
PF15628		103	RRM_DME: RRM in Demeter	100.0
COG0177		211	Nth Predicted EndoIII-related endonuclease [DNA re	100.0
PRK10702		211	endonuclease III; Provisional	100.0
TIGR01083		191	nth endonuclease III. This equivalog model identif	100.0
TIGR01084		275	mutY A/G-specific adenine glycosylase. This equiva	100.0
PRK10880		350	adenine DNA glycosylase; Provisional	100.0
COG2231		215	Uncharacterized protein related to Endonuclease II	100.0
PRK13913		218	3-methyladenine DNA glycosylase; Provisional	100.0
KOG1921		286	consensus Endonuclease III [Replication, recombina	100.0
PRK13910		289	DNA glycosylase MutY; Provisional	99.98
COG1194		342	MutY A/G-specific DNA glycosylase [DNA replication	99.95
smart00478		149	ENDO3c endonuclease III. includes endonuclease III	99.92
cd00056		158	ENDO3c endonuclease III; includes endonuclease III	99.92
PRK01229		208	N-glycosylase/DNA lyase; Provisional	99.9
TIGR03252		177	uncharacterized HhH-GPD family protein. This model	99.81
KOG2457		555	consensus A/G-specific adenine DNA glycosylase [Re	99.81
TIGR00588		310	ogg 8-oxoguanine DNA-glycosylase (ogg). All protei	99.81
COG0122		285	AlkA 3-methyladenine DNA glycosylase/8-oxoguanine	99.74
PRK10308		283	3-methyl-adenine DNA glycosylase II; Provisional	99.61
KOG2875		323	consensus 8-oxoguanine DNA glycosylase [Replicatio	99.5
PF00730		108	HhH-GPD: HhH-GPD superfamily base excision DNA rep	99.47
KOG1918		254	consensus 3-methyladenine DNA glycosidase [Replica	99.45
PF15629		32	Perm-CXXC: Permuted single zf-CXXC unit	99.11
COG1059		210	Thermostable 8-oxoguanine DNA glycosylase [DNA rep	98.46
PF00633		30	HHH: Helix-hairpin-helix motif; InterPro: IPR00044	97.63
PF10576		17	EndIII_4Fe-2S: Iron-sulfur binding domain of endon	96.79
PF09674		232	DUF2400: Protein of unknown function (DUF2400); In	96.68
TIGR02757		229	conserved hypothetical protein TIGR02757. Members	96.2
smart00525		26	FES FES domain. iron-sulpphur binding domain in DN	95.82
smart00278		26	HhH1 Helix-hairpin-helix DNA-binding motif class 1	91.43
PF12826		64	HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS	90.57
PF14716		68	HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU	85.94
PF09171		246	DUF1886: Domain of unknown function (DUF1886); Int	84.89
PRK13901		196	ruvA Holliday junction DNA helicase RuvA; Provisio	84.41
PF14520		60	HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU	83.7
TIGR00426		69	competence protein ComEA helix-hairpin-helix repea	83.6
PRK02515		132	psbU photosystem II complex extrinsic protein prec	82.54

>PF15628 RRM_DME: RRM in Demeter	Back alignment and domain information

Probab=100.00  E-value=5.2e-58  Score=417.01  Aligned_cols=85  Identities=80%  Similarity=1.327  Sum_probs=83.7

Q ss_pred             eeEeeeccccccCCccCCCcceeeceeeecccCCCCCccccchhhccCCceeEEeccChhhhccCCCHHHHHHHhhcCce
Q 002448          833 GTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPREWLWNLPRRMVYFGTSVSSIFKGLSTEGIQFCFWKGKN  912 (921)
Q Consensus       833 gTiLiPCRtAmrg~FPLnGTYFQvNEVFaDh~Ss~~Pi~vpr~~iw~L~rr~vyfGtsv~sI~kg~s~~~iq~cf~~g~v  912 (921)
                      |||||||||||||+|||||||||||||||||+||+|||+|||+|||+|+||+|||||||+|||||||++|||+|||+|||
T Consensus         1 gtiLiPCrtAmrg~FPLnGTYFQ~nEVFaD~~Ss~~Pi~vpr~~iw~L~rr~vYfGtsv~SIfrGls~~eIq~cF~~G~V   80 (103)
T PF15628_consen    1 GTILIPCRTAMRGSFPLNGTYFQVNEVFADHESSRNPIDVPRELIWNLPRRIVYFGTSVSSIFRGLSREEIQQCFWKGFV   80 (103)
T ss_pred             CceEeeehhhhCCccccCceEEEEEEEEeccccccCCeeccHHHhhcCCceEEEecCcHHHHhcccCHHHHHHHHhcCcE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Eeecc
Q 002448          913 YEIPV  917 (921)
Q Consensus       913 Cv~~~  917 (921)
                      |||--
T Consensus        81 CVR~F   85 (103)
T PF15628_consen   81 CVRGF   85 (103)
T ss_pred             EEeec
Confidence            99953

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK10702 endonuclease III; Provisional	Back alignment and domain information

>TIGR01083 nth endonuclease III	Back alignment and domain information

>TIGR01084 mutY A/G-specific adenine glycosylase	Back alignment and domain information

>PRK10880 adenine DNA glycosylase; Provisional	Back alignment and domain information

>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13913 3-methyladenine DNA glycosylase; Provisional	Back alignment and domain information

>KOG1921 consensus Endonuclease III [Replication, recombination and repair]	Back alignment and domain information

>PRK13910 DNA glycosylase MutY; Provisional	Back alignment and domain information

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00478 ENDO3c endonuclease III	Back alignment and domain information

>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases	Back alignment and domain information

>PRK01229 N-glycosylase/DNA lyase; Provisional	Back alignment and domain information

>TIGR03252 uncharacterized HhH-GPD family protein	Back alignment and domain information

>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]	Back alignment and domain information

>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg)	Back alignment and domain information

>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional	Back alignment and domain information

>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]	Back alignment and domain information

>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4	Back alignment and domain information

>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair]	Back alignment and domain information

>PF15629 Perm-CXXC: Permuted single zf-CXXC unit	Back alignment and domain information

>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]	Back alignment and domain information

>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4	Back alignment and domain information

>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides	Back alignment and domain information

>TIGR02757 conserved hypothetical protein TIGR02757	Back alignment and domain information

>smart00525 FES FES domain	Back alignment and domain information

>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1	Back alignment and domain information

>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B	Back alignment and domain information

>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A	Back alignment and domain information

>PF09171 DUF1886: Domain of unknown function (DUF1886); InterPro: IPR015254 This entry represents a set of known and suspected archaeal N-glycosylase/DNA lyases	Back alignment and domain information

>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A	Back alignment and domain information

>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region	Back alignment and domain information

>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		921
1pu6_A		218	3-methyladenine DNA glycosylase; helix-hairpin-hel	3e-24
1orn_A		226	Endonuclease III; DNA repair, DNA glycosylase, [4F	2e-14
3fhg_A		207	Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2abk_A		211	Endonuclease III; DNA-repair, DNA glycosylase; 1.8	1e-12
3i0w_A		290	8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-	6e-12
2xhi_A		360	N-glycosylase/DNA lyase; lyase-DNA complex, lyase/	2e-10
3n0u_A		219	Probable N-glycosylase/DNA lyase; structural genom	2e-07
2jhn_A		295	ALKA, 3-methyladenine DNA-glycosylase; DNA repair,	3e-06
2h56_A		233	DNA-3-methyladenine glycosidase; 10174367, EC 3.2.	5e-04

>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218	Back alignment and structure

 Score =  100 bits (252), Expect = 3e-24
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 10/170 (5%)

Query: 421 KQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEW 480
           K     +  D ++ + +      +++E ++  G  N  A+R+ D    ++++  S     
Sbjct: 56  KNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQS----- 110

Query: 481 LRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 540
             +   +  +++LL  +G+G +S + +           VD        +LG        +
Sbjct: 111 FENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEI--EDYD 168

Query: 541 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVFCTK 589
            LQ    +     E++   L      +    LY   H +++ F K     
Sbjct: 169 ELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVEFSKQKLEL 216

PyMOL of 1pu6

>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Length = 226	Back alignment and structure

>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Length = 211	Back alignment and structure

>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290	Back alignment and structure

>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360	Back alignment and structure

>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Length = 219	Back alignment and structure

>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295	Back alignment and structure

>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Length = 233	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		921
d1pu6a_		217	a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III	3e-21
d1orna_		214	a.96.1.1 (A:) Endonuclease III {Escherichia coli [	2e-09
d2abka_		211	a.96.1.1 (A:) Endonuclease III {Escherichia coli [	8e-09
d1kg2a_		224	a.96.1.2 (A:) Catalytic domain of MutY {Escherichi	1e-08
d2noha1		190	a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum	5e-08
d1rrqa1		221	a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacil	5e-07
d1keaa_		217	a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Me	1e-06

>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Length = 217	Back information, alignment and structure


class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase III (MagIII)
domain: 3-Methyladenine DNA glycosylase III (MagIII)
species: Helicobacter pylori [TaxId: 210]

 Score = 91.0 bits (225), Expect = 3e-21
 Identities = 28/183 (15%), Positives = 69/183 (37%), Gaps = 12/183 (6%)

Query: 408 WESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLN 467
           +E++ K ++    K     +  D ++ + +      +++E ++  G  N  A+R+ D   
Sbjct: 44  FEAVLKSLEN--LKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSG 101

Query: 468 RLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 527
            ++++      +   +   +  +++LL  +G+G +S + +           VD       
Sbjct: 102 NILKDF-----QSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFL 156

Query: 528 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQLITFGKVF 586
            +LG        + LQ    +     E++   L      +    LY   H +++ F K  
Sbjct: 157 KKLGIEI--EDYDELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVEFSKQK 212

Query: 587 CTK 589
              
Sbjct: 213 LEL 215

PyMOL of d1pu6a_

>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 214	Back information, alignment and structure

>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 211	Back information, alignment and structure

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Length = 224	Back information, alignment and structure

>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190	Back information, alignment and structure

>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Length = 221	Back information, alignment and structure

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Length = 217	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		921
d2abka_		211	Endonuclease III {Escherichia coli [TaxId: 562]}	100.0
d1orna_		214	Endonuclease III {Escherichia coli [TaxId: 562]}	100.0
d1keaa_		217	Thymine-DNA glycosylase {Archaeon Methanobacterium	100.0
d1kg2a_		224	Catalytic domain of MutY {Escherichia coli [TaxId:	100.0
d1rrqa1		221	Catalytic domain of MutY {Bacillus stearothermophi	100.0
d1pu6a_		217	3-Methyladenine DNA glycosylase III (MagIII) {Heli	100.0
d2noha1		190	8-oxoguanine glycosylase {Human (Homo sapiens) [Ta	99.85
d1ngna_		144	Mismatch-specific thymine glycosylase domain of th	99.8
d1mpga1		183	3-Methyladenine DNA glycosylase II (gene alkA or a	99.79
d1vdda_		199	Recombination protein RecR {Deinococcus radioduran	87.23
d1bvsa2		71	DNA helicase RuvA subunit, middle domain {Mycobact	82.82
d1ixra1		73	DNA helicase RuvA subunit, middle domain {Thermus	82.81
d1cuka2		78	DNA helicase RuvA subunit, middle domain {Escheric	82.78
d1x2ia1		68	ATP-dependent RNA helicase PF2015 {Pyrococcus furi	81.16

>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=340.49  Aligned_cols=209  Identities=21%  Similarity=0.269  Sum_probs=190.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             74999999998676423788653478871233310135431013441012222322333444596899999985037644
Q 002448          344 MLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE  423 (921)
Q Consensus       344 ~~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~q~T~W~~L~k~l~~~glk~e  423 (921)
                      |+++++.+|+.||...||.|..++.+.          ++|+.||++|||+||++..|+++    |.+|+.          
T Consensus         1 M~~~~~~~i~~~l~~~~~~~~~~l~~~----------~p~~vli~~iLsqqT~~~~v~~~----~~~l~~----------   56 (211)
T d2abka_           1 MNKAKRLEILTRLRENNPHPTTELNFS----------SPFELLIAVLLSAQATDVSVNKA----TAKLYP----------   56 (211)
T ss_dssp             CCHHHHHHHHHHHHHHCSSCCCSSCCS----------SHHHHHHHHHHTTTSCHHHHHHH----HHHHTT----------
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCC----------CHHHHHHHHHHHCCCHHHHHHHH----HHHHHH----------
T ss_conf             988999999999999789999977789----------87999999999562639999999----998887----------


Q ss_pred             CCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHHH
Q ss_conf             33576999999999719999999999822991899999999999998760997803431499457999987077766756
Q 002448          424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS  503 (921)
Q Consensus       424 r~~~~~~~~tpEaIa~A~~eELeelIr~iGf~r~KAk~Ik~lAr~Lve~yGgiDLe~L~~VP~deareeLLsLPGVGrKT  503 (921)
                            .+++|++++.++.++|+++|+++|||++||++|++++++++++|||       .+|.+  +++|++|||||+||
T Consensus        57 ------~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~LpGVG~~T  121 (211)
T d2abka_          57 ------VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPED--RAALEALPGVGRKT  121 (211)
T ss_dssp             ------TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT-------SCCSC--HHHHHHSTTCCHHH
T ss_pred             ------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHH--HHHHHHHHHHCHHH
T ss_conf             ------4147278876557676777777544115788999998889987148-------60477--99999998605178


Q ss_pred             HHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99999983499133212389999988178899999899999999746844777775422200278252899999999993
Q 002448          504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG  583 (921)
Q Consensus       504 AdvILlfalgrpaiPVDTHV~RIl~RLGlv~~k~tpeevE~~L~~llP~lr~Iqk~lW~rl~~ld~e~~~elH~~LI~fG  583 (921)
                      |++||+|+|++++|+||+||.||+.|+||++. .++.+++..+.+++|      ...           +.++|++||.||
T Consensus       122 A~~Il~~a~~~p~~~vD~nv~Rv~~R~g~~~~-~~~~~~~~~~~~~~p------~~~-----------~~~~~~~l~~~G  183 (211)
T d2abka_         122 ANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPG-KNVEQVEEKLLKVVP------AEF-----------KVDCHHWLILHG  183 (211)
T ss_dssp             HHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCC-SSHHHHHHHHHHHSC------GGG-----------TTTHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCC------CCC-----------HHHHHHHHHHHH
T ss_conf             99999998568032256799999997066754-204678888860486------034-----------899999999985


Q ss_pred             HHHCCCCCCCCCCCCCCHHCHHHHHH
Q ss_conf             85434689988899981000435521
Q 002448          584 KVFCTKSKPNCNACPMRGECRHFASA  609 (921)
Q Consensus       584 R~iC~arkP~C~~CPLrdlC~~~~~~  609 (921)
                      +.+|++++|+|+.|||++.|+||.+.
T Consensus       184 ~~vC~~~~P~C~~Cpl~~~C~~~~k~  209 (211)
T d2abka_         184 RYTCIARKPRCGSCIIEDLCEYKEKV  209 (211)
T ss_dssp             HHTSCSSSCCGGGCTTGGGCCCTTCS
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             55525999899999790558986767

PyMOL of d2abka_

>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}	Back information, alignment and structure

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}	Back information, alignment and structure

>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure