Citrus Sinensis ID: 003014

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------
MNKLEAVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
ccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHcccccccccccccccHHHccc
cccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEccccccccccccHHHccHHHHHHccccccccccccccccEEEEcccccEEEEcccccEccccccHHHHHHHHHHHHHHcccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHccccccccHHHHHHHHHHcccHHHHHHccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
MNKLEAVedaglgsststnsqpvqasvrtfsdstvatssatalstttswmptipsfstppglfvtpqtqappglltlrtkdtssafgdfyssaglrpsvptpsapsnsgsaiqhqiyptypslppigvspqgpllrppqmgvrpwlpflpypaaypspfplpahgmpnpsvsqidaqppglssvrtaaatshsaipghqlvgtsgnteappsgtdkkehvhDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNavtgestyekpagfkgepdkvpvqptpismehltgtDWALVTtndgkkyyynskmkvsswqipsevtelkkkedddtlkeqsvpntniviekgsnaislsspavntggrdatalrtssmpgsssALDLIKKKlqdsgtptaspapvssaaatsesngskAVEVTVKGlqnentkdklkdingdgtmsdsssdsedgetgptkEECIIKFKEMLkergvapfskwekelpkivfdprfKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSedidhstdyqtfkkkwgsdprfealdrKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKdilrddpryksvrhedREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIkdpqaswtesrpklekdpqgratnadldssDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAqetedgktvlNSWSTakrvlkpepryskmprkEREALWRRHAEEIQRKHkssldqnednhkdsksrsstdggrppsssrrnqerr
MNKLEAVedaglgsststnsqpvqASVRTFSDSTVATSSATalstttswmpTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSaipghqlvgtsGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPismehltgtdwALVTTNDGKKyyynskmkvsswqipSEVTElkkkedddtlkeqsvpntniviekgsnaislsspavnTGGRDATalrtssmpgsSSALDLIKKKLQDSGTptaspapvssaaatsesngskAVEVtvkglqnentkdklkdingdgtmsdsssdsedgetgptKEECIIKFKEMLKErgvapfskwekelpkiVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDidhstdyqtfkkkwgsdprfealdrkdrellLNERVLPLKRAAEEKAQAIRAAAassfksmlrekgditlssrwskvkdilrddpryksvrhedrevifNEYVRELKAAEEEAEREAKarreeqeklkereremrkrkereeqemervrlkvrrkeaVTSFQALLVetikdpqaswtesrpklekdpqgratnadldssdreKLFREHIKTLYERCAHDFRGLLAEVITAEAAaqetedgktvlnswstakrvlkpepryskmprkereALWRRHAEEIqrkhkssldqnednhkdsksrsstdggrppsssrrnqerr
MNKLEAVEDAGLGSSTSTNSQPVQASVRtfsdstvatssatalstttsWMPTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVtelkkkedddtlkeQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGtptaspapvssaaatsesNGSKAVEVTVKGLQNENTKDKLKDINgdgtmsdsssdsedgetgPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTraeeerkekraaqkaaieGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLkraaeekaqairaaaaSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVrelkaaeeeaereakarreeqeklkereremrkrkereeqemerVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
*******************************************************************************************************************************************MGVRPWLPFLPYPAAY***************************************************************************VNEQLDAWTAHKTDTGIVYYYNAVTGESTY*********************MEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQ***********************************************************************************************************************************************CIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQS****RALFERY***************************************************************LL*****************************************WSKVKDIL************DREVIFNEYVR*****************************************************VTSFQALLVET***********************************LFREHIKTLYERCAHDFRGLLAEVITAEAA**************************************************************************************
****************************************************************************************************************************************************************************************************************************************************TGIVY***************************************DWALVTTNDGKKYYYNSKMKVSSWQIPS********************************************************************************************************************************************CIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKT********************KQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVL***********************M**********SRWSKVKDILRDDPRYKSVRHEDREVIFNEYVREL*******************************************LKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEK******************LFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEE*****************************************
*******************************************STTTSWMPTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLR***************IQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQI******************SAIPGHQLVGTS********************SRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTEL**********EQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATA***********ALDLIKKKL***************************VEVTVKGLQNENTKDKLKDING*******************KEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTR*************AAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELK*****************************************RLKVRRKEAVTSFQALLVETIKDPQ***************************REKLFREHIKTLYERCAHDFRGLLAEVITAEA*********TVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEE*****************************************
*******************************************************FSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFG****SAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVR*************************************************LDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDD**************************************************************************************************************************TGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKD***********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNKLEAVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query857 2.2.26 [Sep-21-2011]
Q9LT25835 Pre-mRNA-processing prote yes no 0.857 0.880 0.575 0.0
Q8CGF71100 Transcription elongation yes no 0.683 0.532 0.287 3e-58
O147761098 Transcription elongation yes no 0.742 0.579 0.277 3e-58
B6EUA9 958 Pre-mRNA-processing prote no no 0.547 0.489 0.270 1e-33
Q9R1C7 953 Pre-mRNA-processing facto no no 0.444 0.399 0.258 5e-30
O75400 957 Pre-mRNA-processing facto no no 0.569 0.509 0.254 2e-27
F4JCC1 992 Pre-mRNA-processing prote no no 0.459 0.397 0.270 1e-24
Q5VWI1586 Transcription elongation no no 0.282 0.412 0.291 2e-21
Q3B807590 Transcription elongation no no 0.154 0.223 0.441 3e-21
P34600724 WW domain-containing prot no no 0.511 0.604 0.222 6e-17
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C PE=1 SV=1 Back     alignment and function desciption
 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/779 (57%), Positives = 572/779 (73%), Gaps = 44/779 (5%)

Query: 63  FVTPQTQAPPGLLTLRTKDTSSAF-GDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYP 121
           F  P T APPGL+T     +  AF G    S   RP +    A  N G  I   +YP Y 
Sbjct: 94  FGRPGTLAPPGLMT-----SPPAFPGSNPFSTTPRPGMSAGPAQMNPG--IHPHMYPPYH 146

Query: 122 SLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGL 181
           SLP    +PQG  L+PP MG  P  PFL +P  +P  +P P  G+ +P++    + P G 
Sbjct: 147 SLP---GTPQGMWLQPPSMGGIPRAPFLSHPTTFPGSYPFPVRGI-SPNLPYSGSHPLGA 202

Query: 182 SSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGAS-VNEQLDAWTA 240
           S + +       A+PG Q   + G          K E +  +  R G+  V  +LDAWTA
Sbjct: 203 SPMGSVGNVH--ALPGRQPDISPGR---------KTEELSGIDDRAGSQLVGNRLDAWTA 251

Query: 241 HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKK 300
           HK++ G++YYYN+VTG+STYEKP GF GEPDKVPVQP P+SME L GTDWALV+TNDGKK
Sbjct: 252 HKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGKK 311

Query: 301 YYYNSKMKVSSWQIPSEVTELKKKEDDDTLKE-QSVPNTNIVIEKGSNAISLSSPAVNTG 359
           YYYN+K KVSSWQIP+EV +  KK ++  ++   SVP+ ++  EKGS+  SLS+PA++ G
Sbjct: 312 YYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLT-EKGSDLTSLSAPAISNG 370

Query: 360 GRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKG 419
           GRDA +L+T++    SSALDL+KKKL DSG P +S         TSE+N  K  EVT  G
Sbjct: 371 GRDAASLKTTNF--GSSALDLVKKKLHDSGMPVSS-------TITSEANSGKTTEVTPSG 421

Query: 420 LQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKE 479
            ++ N+  K+KD  G G +SDSSSDSED ++GP+KEEC  +FKEMLKERG+APFSKWEKE
Sbjct: 422 -ESGNSTGKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKE 480

Query: 480 LPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDI 539
           LPKI+FDPRFKAI S S RR+LFE+YVKTRAEEER+EKRAA KAAIEGF+QLL++ S DI
Sbjct: 481 LPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDDASTDI 540

Query: 540 DHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSM 599
           D  TDY+ FKKKWG+D RFEA++RK+RE LLNERVL LKR+AE+KAQ IRAAAAS FK+M
Sbjct: 541 DQHTDYRAFKKKWGNDLRFEAIERKEREGLLNERVLSLKRSAEQKAQEIRAAAASDFKTM 600

Query: 600 LREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARR 659
           LRE+ +I+++S WSKVKD LR++PRY+SV HEDREV + EY+ ELKAA+   + E KA R
Sbjct: 601 LRER-EISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEYIAELKAAQRGDDHEMKA-R 658

Query: 660 EEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRP 719
           +E++KL+ERERE+RKRKERE QE+ERVR K+RRKEA +S+QALLVE I+DP+ASWTES+P
Sbjct: 659 DEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKP 718

Query: 720 KLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGK 779
            LE+DPQ RA+N DL+ +D+EKLFR+H+K+LYERC HDF+ LLAE +++EAA  +TEDGK
Sbjct: 719 ILERDPQKRASNPDLEPADKEKLFRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGK 778

Query: 780 TVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSR 838
           T LNSWSTAK+VLKP+ RYSKMPR++RE +WRR+ E+I RK      Q  +N+++ K R
Sbjct: 779 TALNSWSTAKQVLKPDIRYSKMPRQDREVVWRRYVEDISRK------QRHENYQEEKQR 831
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2 Back     alignment and function description
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2 Back     alignment and function description
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 Back     alignment and function description
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 Back     alignment and function description
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 Back     alignment and function description
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 Back     alignment and function description
>sp|Q5VWI1|TCRGL_HUMAN Transcription elongation regulator 1-like protein OS=Homo sapiens GN=TCERG1L PE=2 SV=2 Back     alignment and function description
>sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus GN=Tcerg1l PE=2 SV=3 Back     alignment and function description
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query857
359473511 1046 PREDICTED: transcription elongation regu 0.941 0.771 0.699 0.0
255549485886 Pre-mRNA-processing protein PRP40, putat 0.928 0.898 0.679 0.0
449447994845 PREDICTED: pre-mRNA-processing protein 4 0.963 0.977 0.596 0.0
356541002857 PREDICTED: transcription elongation regu 0.982 0.982 0.622 0.0
356540998 1007 PREDICTED: transcription elongation regu 0.982 0.836 0.621 0.0
356544406930 PREDICTED: transcription elongation regu 0.903 0.832 0.635 0.0
357473833 1013 Transcription elongation regulator [Medi 0.969 0.820 0.583 0.0
297830652835 hypothetical protein ARALYDRAFT_898376 [ 0.861 0.883 0.584 0.0
115482600 1078 Os10g0485000 [Oryza sativa Japonica Grou 0.919 0.730 0.524 0.0
449492536628 PREDICTED: LOW QUALITY PROTEIN: pre-mRNA 0.663 0.906 0.697 0.0
>gi|359473511|ref|XP_002272014.2| PREDICTED: transcription elongation regulator 1-like [Vitis vinifera] gi|297738259|emb|CBI27460.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/829 (69%), Positives = 667/829 (80%), Gaps = 22/829 (2%)

Query: 43   LSTTTSWMPTIPSFSTPPGLF----------VTPQTQAPPGLLTLRTKDTSSAFGDFYSS 92
            +  TT WMP+ PSF  P G+           + P T     L         SA  DF SS
Sbjct: 226  MGPTTLWMPSNPSFPVPSGMPVTPGTPGPPGIAPSTPLSSNLAV------PSASMDFSSS 279

Query: 93   AGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP 152
               R   P  +AP +S  AIQ QIYP+Y SLP    S QGP L+PPQMG  P  PF+PYP
Sbjct: 280  VVSRAIFP--AAPVSSNPAIQQQIYPSYSSLPATNASSQGPWLQPPQMGGLPRPPFVPYP 337

Query: 153  AAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSA-IPGHQLVGTSGN-TEAP 210
            A YP+PFPLPAHGMP PSV   D+QPPG++ V TA  T  SA + GH L  TSG  +E P
Sbjct: 338  AVYPTPFPLPAHGMPLPSVPLPDSQPPGVTPVGTAGGTPISAAVSGHHLANTSGMLSELP 397

Query: 211  PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEP 270
            P G D  +HV+   ++ GA+VNEQ+DAWTAHKTDTG+VYYYNA+TGESTYEKP+ FKGE 
Sbjct: 398  PPGIDDNKHVNGAGTKDGAAVNEQVDAWTAHKTDTGVVYYYNALTGESTYEKPSDFKGEA 457

Query: 271  DKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTL 330
            DKV VQPTP+S E LTGTDWALVTTNDGKKYYYN+K K+SSWQIP+E+TE++KK+D   L
Sbjct: 458  DKVTVQPTPVSWEKLTGTDWALVTTNDGKKYYYNTKTKLSSWQIPTELTEMRKKQDSVAL 517

Query: 331  KEQSV--PNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDS 388
            KE ++  PNTN+  EKG + I+LS+PAV TGGRDAT LRTS++PGS+SALD+IKKKLQDS
Sbjct: 518  KEHAMLAPNTNVSTEKGPSPIALSAPAVTTGGRDATPLRTSAVPGSASALDMIKKKLQDS 577

Query: 389  GTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDG 448
            G P  S    SS    SE NGS+ +E TVKGLQ+EN+KDKLKD NGDG MSDSSSDSED 
Sbjct: 578  GAPATSSPVHSSGPIASELNGSRVIEPTVKGLQSENSKDKLKDTNGDGNMSDSSSDSEDV 637

Query: 449  ETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKT 508
            ++GPTKEECII+FKEMLKERGVAPFSKWEKELPKIVFDPRFKAI   SARR+LFE YV+T
Sbjct: 638  DSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPGYSARRSLFEHYVRT 697

Query: 509  RAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDREL 568
            RAEEERKEKRAAQ+AAIEGFKQLLEE SEDIDH T+YQTF+KKWG DPRFEALDRKDREL
Sbjct: 698  RAEEERKEKRAAQRAAIEGFKQLLEEASEDIDHKTEYQTFRKKWGDDPRFEALDRKDREL 757

Query: 569  LLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSV 628
            LLNERVLPLKRAAEEKAQAIRAAA SSFKSMLR+KGDIT S+RWS+VKD LR+DPRYK V
Sbjct: 758  LLNERVLPLKRAAEEKAQAIRAAAVSSFKSMLRDKGDITTSTRWSRVKDSLRNDPRYKCV 817

Query: 629  RHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRL 688
            +HEDRE++FNEY+ ELKAAEEE EREAK+++EEQ+KLKERERE+RKRKEREEQEMERVRL
Sbjct: 818  KHEDREILFNEYISELKAAEEEVEREAKSKKEEQDKLKERERELRKRKEREEQEMERVRL 877

Query: 689  KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
            KVRRKEAV+S+QALLVETIKDPQ SWTES+PKLEKDPQ RATN+DLD SD EKLFREHIK
Sbjct: 878  KVRRKEAVSSYQALLVETIKDPQVSWTESKPKLEKDPQARATNSDLDPSDLEKLFREHIK 937

Query: 749  TLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREA 808
             L+ER AH+FR LL+EV+TAEAA QETEDGKTVL SWSTAKR+L+ + RY KMPRK+RE+
Sbjct: 938  MLHERRAHEFRALLSEVLTAEAATQETEDGKTVLTSWSTAKRLLRSDTRYIKMPRKDRES 997

Query: 809  LWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR 857
            +WRR++EE+ RK K + DQ E+ H + K RSS D GR PS SRR  ERR
Sbjct: 998  VWRRYSEEMLRKQKLAQDQTEEKHTEVKGRSSVDSGRFPSGSRRAHERR 1046

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549485|ref|XP_002515795.1| Pre-mRNA-processing protein PRP40, putative [Ricinus communis] gi|223545064|gb|EEF46576.1| Pre-mRNA-processing protein PRP40, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449447994|ref|XP_004141751.1| PREDICTED: pre-mRNA-processing protein 40C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356541002|ref|XP_003538973.1| PREDICTED: transcription elongation regulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356540998|ref|XP_003538971.1| PREDICTED: transcription elongation regulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356544406|ref|XP_003540642.1| PREDICTED: transcription elongation regulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357473833|ref|XP_003607201.1| Transcription elongation regulator [Medicago truncatula] gi|355508256|gb|AES89398.1| Transcription elongation regulator [Medicago truncatula] Back     alignment and taxonomy information
>gi|297830652|ref|XP_002883208.1| hypothetical protein ARALYDRAFT_898376 [Arabidopsis lyrata subsp. lyrata] gi|297329048|gb|EFH59467.1| hypothetical protein ARALYDRAFT_898376 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115482600|ref|NP_001064893.1| Os10g0485000 [Oryza sativa Japonica Group] gi|78708826|gb|ABB47801.1| FF domain containing protein, expressed [Oryza sativa Japonica Group] gi|113639502|dbj|BAF26807.1| Os10g0485000 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449492536|ref|XP_004159026.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing protein 40C-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query857
UNIPROTKB|F1RM101068 TCERG1 "Uncharacterized protei 0.207 0.166 0.364 4.7e-40
UNIPROTKB|F1NT101019 TCERG1 "Uncharacterized protei 0.247 0.208 0.337 1.1e-39
UNIPROTKB|O147761098 TCERG1 "Transcription elongati 0.207 0.162 0.364 1.4e-39
UNIPROTKB|F1MKU91062 TCERG1 "Uncharacterized protei 0.207 0.167 0.364 3.7e-39
MGI|MGI:19264211100 Tcerg1 "transcription elongati 0.207 0.161 0.364 9.5e-39
RGD|13117481081 Tcerg1 "transcription elongati 0.207 0.164 0.364 1.1e-38
WB|WBGene00022855914 tcer-1 [Caenorhabditis elegans 0.214 0.201 0.317 1.9e-28
UNIPROTKB|F1NQH4 1076 PRPF40A "Uncharacterized prote 0.630 0.501 0.227 2.4e-27
ZFIN|ZDB-GENE-030131-274 851 prpf40a "PRP40 pre-mRNA proces 0.205 0.206 0.304 1.7e-26
TAIR|locus:2194894 958 PRP40A "pre-mRNA-processing pr 0.621 0.556 0.217 1.9e-26
UNIPROTKB|F1RM10 TCERG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 278 (102.9 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
 Identities = 67/184 (36%), Positives = 93/184 (50%)

Query:   460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
             +FK+ML ERGV+ FS WEKEL KIVFDPR+  +  +  R+ +F++YVKT           
Sbjct:   635 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKN 693

Query:   520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLX 578
                     FK+++EE     +    +  F  K   D RF+A+++ KDRE L NE V    
Sbjct:   694 KIMQAKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAAR 751

Query:   579 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIF 637
                            S F  +L     +   SRWSKVKD +  DPRYK+V     RE +F
Sbjct:   752 KKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 810

Query:   638 NEYV 641
              +Y+
Sbjct:   811 KQYI 814
GO:0070064 "proline-rich region binding" evidence=IEA
GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA
GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA
UNIPROTKB|F1NT10 TCERG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O14776 TCERG1 "Transcription elongation regulator 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MKU9 TCERG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1926421 Tcerg1 "transcription elongation regulator 1 (CA150)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311748 Tcerg1 "transcription elongation regulator 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00022855 tcer-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQH4 PRPF40A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-274 prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2194894 PRP40A "pre-mRNA-processing protein 40A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LT25PR40C_ARATHNo assigned EC number0.57500.85760.8802yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query857
COG5104590 COG5104, PRP40, Splicing factor [RNA processing an 5e-19
pfam0184650 pfam01846, FF, FF domain 6e-12
pfam0184650 pfam01846, FF, FF domain 2e-10
smart0044155 smart00441, FF, Contains two conserved F residues 5e-09
pfam0184650 pfam01846, FF, FF domain 5e-08
smart0044155 smart00441, FF, Contains two conserved F residues 2e-07
pfam0039730 pfam00397, WW, WW domain 9e-07
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 2e-06
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 4e-06
COG1269 660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 1e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-05
smart0044155 smart00441, FF, Contains two conserved F residues 3e-05
pfam13908177 pfam13908, Shisa, Wnt and FGF inhibitory regulator 5e-05
pfam0184650 pfam01846, FF, FF domain 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 1e-04
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
COG1390194 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su 3e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-04
pfam0039730 pfam00397, WW, WW domain 5e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.001
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 0.002
pfam14179110 pfam14179, YppG, YppG-like protein 0.002
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.003
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
PRK04863 1486 PRK04863, mukB, cell division protein MukB; Provis 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information 
 Score = 91.7 bits (227), Expect = 5e-19
 Identities = 82/424 (19%), Positives = 156/424 (36%), Gaps = 58/424 (13%)

Query: 228 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG-FKGEPDKVPVQPTPISMEHLT 286
           G +  E    W   K   G +YYYN  TG+S++EKP    KG  + + V P         
Sbjct: 7   GMASGEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDP--------- 57

Query: 287 GTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGS 346
              W    T DGK YYYNS  + S W+IP E    +KK +      +   +   +I    
Sbjct: 58  ---WKECRTADGKVYYYNSITRESRWKIPPE----RKKVEP---IAEQKHDERSMIGGNG 107

Query: 347 NAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSE 406
           N ++++    +         R  S  G +S  D + +      T   +     +    ++
Sbjct: 108 NDMAITDHETSEPKYLLG--RLMSQYGITSTKDAVYRL-----TKEEAEKEFITMLKENQ 160

Query: 407 SNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSD--------SSSDSEDGETGPTKEECI 458
            + +  +   ++ L++        D      +             + E+ +      E  
Sbjct: 161 VDSTWPIFRAIEELRDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRKYINE-- 218

Query: 459 IKFKEMLK-ERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEK 517
             F +ML     +  ++ W          P + ++ ++  +R  F++Y       E+   
Sbjct: 219 --FCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVG 276

Query: 518 RAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPR------FEALDRKDRELLLN 571
           +     A+   +++L  +  +      +      + S  R       + LDRKD      
Sbjct: 277 KHMGGTALGRLEEVLRSLGSET--FIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFI 334

Query: 572 ERVLPLKRAAEEKAQAIRAAAAS-------SFKSMLRE---KGDITLSSRWSKVKDILRD 621
             V  L++      +  +AAAA         F+++LR+   +G I    +W     +++D
Sbjct: 335 RYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYYRMKWKNAYPLIKD 394

Query: 622 DPRY 625
           DPR+
Sbjct: 395 DPRF 398

Length = 590
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues Back     alignment and domain information
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 857
KOG0155617 consensus Transcription factor CA150 [Transcriptio 100.0
COG5104590 PRP40 Splicing factor [RNA processing and modifica 100.0
KOG0155617 consensus Transcription factor CA150 [Transcriptio 100.0
KOG0152463 consensus Spliceosomal protein FBP11/Splicing fact 99.96
COG5104 590 PRP40 Splicing factor [RNA processing and modifica 99.93
KOG0152463 consensus Spliceosomal protein FBP11/Splicing fact 99.72
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 99.32
PF0184651 FF: FF domain; InterPro: IPR002713 The FF domain m 99.11
smart0044155 FF Contains two conserved F residues. A novel moti 99.03
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.72
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.7
PF0184651 FF: FF domain; InterPro: IPR002713 The FF domain m 98.65
smart0044155 FF Contains two conserved F residues. A novel moti 98.62
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.61
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.5
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 98.47
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 98.45
cd0020131 WW Two conserved tryptophans domain; also known as 98.39
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 98.24
cd0020131 WW Two conserved tryptophans domain; also known as 98.11
KOG1891271 consensus Proline binding protein WW45 [General fu 97.66
KOG3259163 consensus Peptidyl-prolyl cis-trans isomerase [Pos 97.66
KOG4849498 consensus mRNA cleavage factor I subunit/CPSF subu 97.63
KOG3259163 consensus Peptidyl-prolyl cis-trans isomerase [Pos 97.15
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 97.15
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 96.98
KOG2893341 consensus Zn finger protein [General function pred 96.89
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 96.8
KOG0119554 consensus Splicing factor 1/branch point binding p 96.74
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 96.7
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 96.4
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 96.4
KOG0119554 consensus Splicing factor 1/branch point binding p 96.22
KOG2893341 consensus Zn finger protein [General function pred 95.99
KOG0132894 consensus RNA polymerase II C-terminal domain-bind 95.73
KOG4672487 consensus Uncharacterized conserved low complexity 94.43
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 93.75
KOG4849498 consensus mRNA cleavage factor I subunit/CPSF subu 93.01
KOG03911958 consensus SNF2 family DNA-dependent ATPase [Genera 92.51
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 92.49
KOG1923830 consensus Rac1 GTPase effector FRL [Signal transdu 90.82
KOG1830518 consensus Wiskott Aldrich syndrome proteins [Cytos 89.91
PHA03378991 EBNA-3B; Provisional 88.32
KOG0150336 consensus Spliceosomal protein FBP21 [RNA processi 87.75
PF03154982 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 87.37
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 87.18
KOG0150336 consensus Spliceosomal protein FBP21 [RNA processi 87.14
KOG3209 984 consensus WW domain-containing protein [General fu 84.98
KOG4264694 consensus Nucleo-cytoplasmic protein MLN51 [Genera 83.5
KOG2932389 consensus E3 ubiquitin ligase involved in ubiquiti 82.89
PF03154982 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 81.68
KOG02601605 consensus RNA polymerase II, large subunit [Transc 80.78
KOG4307944 consensus RNA binding protein RBM12/SWAN [General 80.73
>KOG0155 consensus Transcription factor CA150 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.7e-83  Score=695.55  Aligned_cols=594  Identities=31%  Similarity=0.473  Sum_probs=473.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCcc
Q 003014          138 PQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKK  217 (857)
Q Consensus       138 p~~~~~~~pp~~~~~~~~~g~~~~p~~g~~~p~~~~p~~~ppg~~~~~~~~~~~~~~~~g~q~~~~~~~~~~~~~~~~~~  217 (857)
                      |.|.|.+.||  +..+.|++|.|.|-.+.+ ++.....+-|.+...++..|++..  -||.+|.+...            
T Consensus         2 p~~~~~~~ap--s~wtef~ap~G~pyy~ns-~t~~st~ekP~~l~~~~s~~~~~~--~p~~sp~~~~~------------   64 (617)
T KOG0155|consen    2 PHGQIPMSAP--SGWTEFKAPDGIPYYWNS-ETLESTWEKPSFLEKNESSGVTAS--EPSLSPAIAEA------------   64 (617)
T ss_pred             CCCCCCCCCC--CCCccCCCCCCcceeccc-ccccchhhCchhhhhccccCcccc--CCccCcchhhh------------
Confidence            4555556665  667788888888988887 444466777888888887765522  23332111111            


Q ss_pred             ccccccccccCCCCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCC
Q 003014          218 EHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND  297 (857)
Q Consensus       218 ~~~~~~~t~~~~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~  297 (857)
                                      +...|+.+..+.|-.||||..+   +.+.|..+.+...+++.+|.+..  +++|++||.|||+|
T Consensus        65 ----------------~~~t~~~~~~e~~~~k~~~s~~---~~ee~~~~~~~~kk~p~rPi~~~--~ipgtdWcVVwTgD  123 (617)
T KOG0155|consen   65 ----------------QQKTSSNAFGENPSEKLFVSEN---AAEERKNSRAARKKLPDRPIFKK--PIPGTDWCVVWTGD  123 (617)
T ss_pred             ----------------hhhhhhccCCcchHHHHHhCcc---hhhcCCCcccccccCCCCCCCCC--CCCCCCeEEEEeCC
Confidence                            2457888999999999999988   88999888887777777766554  58999999999999


Q ss_pred             CceEEEeCCCCeeeccCChhhHHhhhhcchhhhhhccCCCcchhhcccCCcccCCCCCccCCCCCccccccCCCCCCchh
Q 003014          298 GKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSA  377 (857)
Q Consensus       298 Gr~YyyN~~T~~S~We~P~e~~~~~~~~~~~~~ke~~~p~~~~~~e~~~~~~~~~~pa~~~~~~~~~~~~~~~~~~~~sa  377 (857)
                      ||+||||+.|+.|+|++|.++.+.   .+.+.+.  +.|... .++.++....+.+|+...++.++....       +..
T Consensus       124 ~RvFFyNpktk~S~We~P~dlk~r---~dvdkii--s~Ppsk-k~eees~kt~~eap~~s~~~~~~aed~-------~~~  190 (617)
T KOG0155|consen  124 NRVFFYNPKTKLSVWERPLDLKGR---LDVDKII--SKPPSK-KQEEESKKTNHEAPHESRHLQTEAEDP-------SGK  190 (617)
T ss_pred             CceEEeCCccccccccCchhhccc---ccHHHHh--cCCcch-hhhhhcccccCCCcchhccccchhccC-------cch
Confidence            999999999999999999998763   3333322  223221 233445555667777666655442211       113


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCccccccc-cCCCccchhhhcccccccchhhhcccCCCCCCCCCCCCCCCCCCCCCHHH
Q 003014          378 LDLIKKKLQDSGTPTASPAPVSSAAATSE-SNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEE  456 (857)
Q Consensus       378 ~~~~kk~~~~~~~~~~sp~~~~~~~~~~e-~~~~~~~~~t~~~~~~~~~~~k~kd~~~~~~~s~~ssdseee~~~~tkEE  456 (857)
                      .+....+...++.++..-       ...+ .++.         +           ..+.....+++.+..++...+++||
T Consensus       191 ~d~~~sEe~~E~~~vk~k-------k~ke~~~~~---------l-----------q~e~~~~~eas~da~~e~~~vplEe  243 (617)
T KOG0155|consen  191 EDVSYSEEFYEDSDVKEK-------KEKEHSAGE---------L-----------QPEQLAAEEASYDAAEERTNVPLEE  243 (617)
T ss_pred             hhhhHHHhhhccCchhhh-------hhccccccC---------C-----------CccccchhhhccccccccccCCHHH
Confidence            333333333444332210       0000 0000         0           0111223344567778889999999


Q ss_pred             HHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003014          457 CIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVS  536 (857)
Q Consensus       457 a~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~~LL~e~~  536 (857)
                      +..+|++||+|+||++|++|+.++++|++||||.+|.+. +|++||+.||+.++++++.+++.+.+.|+++|..||.++ 
T Consensus       244 r~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s~-~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~-  321 (617)
T KOG0155|consen  244 RRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNSG-ERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEA-  321 (617)
T ss_pred             HHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence            999999999999999999999999999999999999986 999999999999999999999999999999999999997 


Q ss_pred             cCCCCCccHHHHHHHhcCCchhhcCCH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHH
Q 003014          537 EDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKV  615 (857)
Q Consensus       537 ~~i~~~t~W~e~~~k~~~Dprfkal~~-~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~~It~~T~W~ev  615 (857)
                       .++..++|+.|..+|++|+||++++. +||+.||++||..|++.++++.+..+++++.+|..||.+. .|+..+.|+++
T Consensus       322 -~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~-~l~~~S~ws~t  399 (617)
T KOG0155|consen  322 -ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQ-ELTRKSKWSKT  399 (617)
T ss_pred             -cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccc-hhhhhhhhhHH
Confidence             47888999999999999999999998 9999999999999999999999999999999999999998 49999999999


Q ss_pred             HHHhccCcccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003014          616 KDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKE  694 (857)
Q Consensus       616 ~~~L~~DpRy~~l~~-~dr~~lFeeyi~~L~~~e~e~~r~~k~kre~~~~l~eRere~rk~k~ree~e~er~R~~~rr~e  694 (857)
                      +..|.+++||++|+. ++|+.||.+||.+|..+...+....+ .++.+++|++|+||+++++.+|.+|.+|+|+++++.|
T Consensus       400 k~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er-~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e  478 (617)
T KOG0155|consen  400 KDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQER-EKRLEAQLREREREVEKELGNQLRERTREREKQKRGE  478 (617)
T ss_pred             HHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999997 89999999999999887553332222 3345677999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003014          695 AVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQE  774 (857)
Q Consensus       695 a~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~~~~Ls~~drekLF~dhi~~L~ek~~~~Fr~LL~e~~~~~~~~~~  774 (857)
                      |.+.|++||.|+|+++..+|.|.+++|++|+|| +.+..|+..++++||+|||+.|.++|+++|+.||.++.        
T Consensus       479 ~~~~y~all~d~irs~e~sw~e~rrilrkd~r~-as~~~le~~~keklf~dhiksl~~k~re~f~qllde~~--------  549 (617)
T KOG0155|consen  479 AEDTYRALLIDLIRSTENSWHEARRILRKDERY-ASCDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEHE--------  549 (617)
T ss_pred             HHHHHHHHHHHHHhCcccchHHhHHHhhccccc-ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------
Confidence            999999999999999999999999999999994 66789999999999999999999999999999999985        


Q ss_pred             hccCCcccCCHHHHHHhcCCCccccCCChhHH--HHHHHHHHHHHHHhhhhccc
Q 003014          775 TEDGKTVLNSWSTAKRVLKPEPRYSKMPRKER--EALWRRHAEEIQRKHKSSLD  826 (857)
Q Consensus       775 ~~~~~t~~~~w~e~k~~I~~D~Ry~~l~~~eR--e~lf~~~ie~l~~~~k~~~~  826 (857)
                         .||+.+.|.+++++|+++++|+++.+++|  +.-|++|++...+-.+..|+
T Consensus       550 ---~it~~~~w~e~kkii~e~~t~~k~~ss~rk~~r~f~d~~~~~~~~~~d~fr  600 (617)
T KOG0155|consen  550 ---KITPMMRWREAKKIIQEEETFVKIASSERKVERDFRDWQERRHDHLTDEFR  600 (617)
T ss_pred             ---hcchHHHHHHhhHHHhhhHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHH
Confidence               46888899999999999999998887765  45566666665555544443

>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0155 consensus Transcription factor CA150 [Transcription] Back     alignment and domain information
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] Back     alignment and domain information
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] Back     alignment and domain information
>smart00441 FF Contains two conserved F residues Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] Back     alignment and domain information
>smart00441 FF Contains two conserved F residues Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>KOG1891 consensus Proline binding protein WW45 [General function prediction only] Back     alignment and domain information
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2893 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG2893 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] Back     alignment and domain information
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] Back     alignment and domain information
>PHA03378 EBNA-3B; Provisional Back     alignment and domain information
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] Back     alignment and domain information
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] Back     alignment and domain information
>KOG3209 consensus WW domain-containing protein [General function prediction only] Back     alignment and domain information
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only] Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene Back     alignment and domain information
>KOG0260 consensus RNA polymerase II, large subunit [Transcription] Back     alignment and domain information
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query857
3hfh_A190 Crystal Structure Of Tandem Ff Domains Length = 190 9e-13
4fqg_A190 Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat 6e-09
2dod_A82 Solution Structure Of The First Ff Domain Of Human 9e-09
2kis_A71 Solution Structure Of Ca150 Ff1 Domain And Ff1-Ff2 1e-08
2l5f_A92 Solution Structure Of The Tandem Ww Domains From Hy 6e-07
2jxw_A75 Solution Structure Of The Tandem Ww Domains Of Fbp2 2e-05
1o6w_A75 Solution Structure Of The Prp40 Ww Domain Pair Of T 2e-05
2dof_A85 Solution Structure Of The Fourth Ff Domain Of Human 6e-05
2kzg_A71 The Structure Of An Ff Domain From Human HypaFBP11 8e-04
>pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains Length = 190 Back     alignment and structure 
Iteration: 1

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 86/184 (46%), Gaps = 6/184 (3%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
           +F + L ERGV+ FS WE EL  IVFDPR+  +     R  +F++YV T           
Sbjct: 10  QFXDXLLERGVSAFSTWEXELHXIVFDPRYLLLNPXE-RXQVFDQYVXTRAEEERREXXN 68
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLLNERVLPLX 578
                   F    EE     +    +  F      D RF A++   DRE L NE V    
Sbjct: 69  XIXQAXEDFXXXXEEAX--FNPRATFSEFAAXHAXDSRFXAIEXXXDREALFNEFVAAAR 126
Query: 579 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSV-RHEDREVIF 637
                          S F  +L     +   SRWS V D +  DPRY +V     RE +F
Sbjct: 127 XXEXEDSXTRGEXIXSDFFELLSNHH-LDSQSRWSXVXDXVESDPRYXAVDSSSXREDLF 185
Query: 638 NEYV 641
            +Y+
Sbjct: 186 XQYI 189
>pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain Length = 190 Back     alignment and structure
>pdb|2DOD|A Chain A, Solution Structure Of The First Ff Domain Of Human Transcription Factor Ca150 Length = 82 Back     alignment and structure
>pdb|2KIS|A Chain A, Solution Structure Of Ca150 Ff1 Domain And Ff1-Ff2 Interdomain Linker Length = 71 Back     alignment and structure
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11 Length = 92 Back     alignment and structure
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21 Length = 75 Back     alignment and structure
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The Yeast Splicing Factor Prp40 Length = 75 Back     alignment and structure
>pdb|2DOF|A Chain A, Solution Structure Of The Fourth Ff Domain Of Human Transcription Factor Ca150 Length = 85 Back     alignment and structure
>pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate At Atomic Resolution Length = 71 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query857
3hfh_A190 Transcription elongation regulator 1; helix bundle 1e-45
3hfh_A190 Transcription elongation regulator 1; helix bundle 3e-20
3hfh_A190 Transcription elongation regulator 1; helix bundle 4e-18
3hfh_A190 Transcription elongation regulator 1; helix bundle 3e-06
2dod_A82 Transcription elongation regulator 1; FF domain, s 4e-22
2dod_A82 Transcription elongation regulator 1; FF domain, s 2e-11
2dof_A85 Transcription elongation regulator 1; FF domain, s 1e-21
2dof_A85 Transcription elongation regulator 1; FF domain, s 2e-04
2dof_A85 Transcription elongation regulator 1; FF domain, s 3e-04
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 3e-18
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 9e-18
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 9e-16
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 6e-06
2jxw_A75 WW domain-binding protein 4; WW domain containing 2e-15
2doe_A83 Transcription elongation regulator 1; FF domain, s 1e-14
2doe_A83 Transcription elongation regulator 1; FF domain, s 1e-12
2doe_A83 Transcription elongation regulator 1; FF domain, s 7e-08
2doe_A83 Transcription elongation regulator 1; FF domain, s 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 8e-11
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 4e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
2dk7_A73 Transcription elongation regulator 1; structural g 8e-10
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 2e-09
2juc_A59 PRE-mRNA-splicing factor URN1; FF, helical bundle, 8e-09
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 2e-08
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 4e-05
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 4e-08
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 1e-04
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 4e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-08
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 8e-08
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-04
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 2e-07
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 1e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 4e-05
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 4e-05
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 9e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 3e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 7e-04
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
 Score =  161 bits (408), Expect = 1e-45
 Identities = 69/194 (35%), Positives = 94/194 (48%), Gaps = 6/194 (3%)

Query: 451 GPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRA 510
           GP     + +F +ML ERGV+ FS WE EL  IVFDPR+  +     R  +F++YV TRA
Sbjct: 1   GPLGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLLNP-XERXQVFDQYVXTRA 59

Query: 511 EEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRK-DRELL 569
           EEER+E       A E F  ++EE     +    +  F      D RF A++   DRE L
Sbjct: 60  EEERREXXNXIMQAXEDFXXMMEE--AXFNPRATFSEFAAXHAXDSRFXAIEXMXDREAL 117

Query: 570 LNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVR 629
            NE V   +    E +        S F  +L     +   SRWS V D +  DPRY +V 
Sbjct: 118 FNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRWSXVXDXVESDPRYXAVD 176

Query: 630 HED-REVIFNEYVR 642
               RE +F +Y+ 
Sbjct: 177 SSSMREDLFXQYIE 190
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 Back     alignment and structure
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} Length = 59 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query857
3hfh_A190 Transcription elongation regulator 1; helix bundle 100.0
3hfh_A190 Transcription elongation regulator 1; helix bundle 99.93
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 99.78
2jxw_A75 WW domain-binding protein 4; WW domain containing 99.77
2dod_A82 Transcription elongation regulator 1; FF domain, s 99.75
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 99.7
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 99.67
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 99.64
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 99.64
2b7e_A59 PRE-mRNA processing protein PRP40; structural prot 99.62
2dof_A85 Transcription elongation regulator 1; FF domain, s 99.59
2juc_A59 PRE-mRNA-splicing factor URN1; FF, helical bundle, 99.41
2doe_A83 Transcription elongation regulator 1; FF domain, s 99.37
2dk7_A73 Transcription elongation regulator 1; structural g 99.15
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 99.04
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 99.03
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 98.92
2doe_A83 Transcription elongation regulator 1; FF domain, s 98.88
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 98.85
2dk7_A73 Transcription elongation regulator 1; structural g 98.84
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 98.83
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 98.82
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 98.78
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 98.77
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 98.75
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.74
1ymz_A43 CC45; artificial protein, computational design, un 98.71
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 98.71
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 98.71
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 98.69
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.68
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 98.67
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 98.67
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 98.67
2dof_A85 Transcription elongation regulator 1; FF domain, s 98.64
1ymz_A43 CC45; artificial protein, computational design, un 98.63
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 98.62
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 98.62
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 98.6
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 98.59
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 98.58
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 98.56
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 98.54
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 98.53
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 98.52
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 98.52
2dod_A82 Transcription elongation regulator 1; FF domain, s 98.52
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 98.51
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 98.5
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 98.5
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 98.49
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 98.48
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 98.45
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 98.43
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 98.43
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 98.41
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 98.39
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.39
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 98.39
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 98.37
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 98.34
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 98.33
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 98.33
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 98.32
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 98.31
2juc_A59 PRE-mRNA-splicing factor URN1; FF, helical bundle, 98.31
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 98.31
2jxw_A75 WW domain-binding protein 4; WW domain containing 98.3
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 98.29
2e45_A55 Fe65 protein, amyloid beta A4 precursor protein-bi 98.27
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 98.27
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 98.25
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 98.25
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 98.24
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 98.23
2b7e_A59 PRE-mRNA processing protein PRP40; structural prot 98.22
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 98.2
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 98.19
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 98.15
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 98.14
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 98.14
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 98.13
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 98.1
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 98.09
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 98.05
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 98.05
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 98.04
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 98.01
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 98.0
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 97.99
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 97.95
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 97.95
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 97.94
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 97.91
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 97.86
1jmq_A46 YAP65, 65 kDa YES-associated protein; polyproline 97.82
2e45_A55 Fe65 protein, amyloid beta A4 precursor protein-bi 97.61
3tc5_A166 Peptidyl-prolyl CIS-trans isomerase NIMA-interact; 97.54
3l4h_A109 E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d 97.41
3tc5_A166 Peptidyl-prolyl CIS-trans isomerase NIMA-interact; 96.99
1eg3_A261 Dystrophin; EF-hand like domain, WW domain, struct 96.5
2kfd_A69 PRE-mRNA-processing protein PRP40; FF domain, mRNA 96.49
2kfd_A69 PRE-mRNA-processing protein PRP40; FF domain, mRNA 96.07
1eg3_A261 Dystrophin; EF-hand like domain, WW domain, struct 95.81
2k85_A69 Glucocorticoid receptor DNA-binding factor 1; FF d 95.73
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 95.73
1yw5_A177 Peptidyl prolyl CIS/trans isomerase; WW-domain, pp 94.87
2k85_A69 Glucocorticoid receptor DNA-binding factor 1; FF d 94.46
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 93.96
1yw5_A177 Peptidyl prolyl CIS/trans isomerase; WW-domain, pp 90.88
3le4_A79 Microprocessor complex subunit DGCR8; WW motif, di 81.61
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Back     alignment and structure
Probab=100.00  E-value=6.9e-40  Score=334.09  Aligned_cols=188  Identities=37%  Similarity=0.638  Sum_probs=159.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014          451 GPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQ  530 (857)
Q Consensus       451 ~~tkEEa~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~~  530 (857)
                      |+|+|||+.+|++||++++|+++|+|+++|++|++||||.+| +.++||++|++||.+++++++++++.+.+.++++|++
T Consensus         1 ~~s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~   79 (190)
T 3hfh_A            1 GPLGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXX   79 (190)
T ss_dssp             -CCSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999 7999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCccHHHHHHHhcCCchhhcCCH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 003014          531 LLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLS  609 (857)
Q Consensus       531 LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~~-~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~~It~~  609 (857)
                      ||++.  +|+++++|.+|..+|.+||||++|.. .||+.||++||..|+++++++++..+++++.+|.+||.++ .|++.
T Consensus        80 lL~e~--~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~  156 (190)
T 3hfh_A           80 MMEEA--XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQ  156 (190)
T ss_dssp             -----------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTT
T ss_pred             HHHHc--CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCC
Confidence            99986  59999999999999999999999987 9999999999999999998888888899999999999998 89999


Q ss_pred             CChHHHHHHhccCccccccccc-cHHHHHHHHHH
Q 003014          610 SRWSKVKDILRDDPRYKSVRHE-DREVIFNEYVR  642 (857)
Q Consensus       610 T~W~ev~~~L~~DpRy~~l~~~-dr~~lFeeyi~  642 (857)
                      |+|.+|+..|.+||||++|... +|+.||++||+
T Consensus       157 t~W~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~  190 (190)
T 3hfh_A          157 SRWSXVXDXVESDPRYXAVDSSSMREDLFXQYIE  190 (190)
T ss_dssp             CCHHHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhhChHhhcCCCHHHHHHHHHHHhC
Confidence            9999999999999999999985 99999999983
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Back     alignment and structure
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Back     alignment and structure
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Back     alignment and structure
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Back     alignment and structure
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Back     alignment and structure
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 857
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 1e-17
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 2e-12
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 4e-12
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 1e-11
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 1e-05
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 5e-16
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 3e-15
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 9e-14
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 3e-10
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 9e-15
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 4e-14
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 3e-13
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 6e-11
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 4e-14
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 2e-11
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 2e-10
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 2e-06
d2b7ea156 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP 3e-12
d2b7ea156 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP 3e-04
d2dk1a138 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP 4e-11
d2dk1a138 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP 9e-06
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 6e-09
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 5e-05
d1ywia128 b.72.1.1 (A:15-42) Huntingtin-interacting protein 3e-08
d1ywia128 b.72.1.1 (A:15-42) Huntingtin-interacting protein 8e-05
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 2e-07
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 4e-06
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 3e-07
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 6e-05
d2cqna164 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapi 1e-06
d2cqna164 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapi 6e-04
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 4e-06
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 5e-04
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 4e-04
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 5e-04
d1i5hw_50 b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain 0.004
d1tk7a145 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) 0.004
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 684 ERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLF 743
           +R R + +R+EA+ +F+ALL + ++    SW+++R  L KD +  + +  L+  ++EKLF
Sbjct: 1   DREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLF 59

Query: 744 REHIKTLYER 753
            EHI+ L ++
Sbjct: 60  NEHIEALTKK 69
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query857
d2b7ea156 Pre-mRNA-processing protein PRP40 {Baker's yeast ( 99.63
d1uzca_69 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 99.58
d2doda169 Transcription elongation regulator 1 {Human (Homo 99.55
d2doea170 Transcription elongation regulator 1 {Human (Homo 99.44
d2dofa172 Transcription elongation regulator 1 {Human (Homo 99.35
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 99.21
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 99.18
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 99.17
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 99.16
d2dofa172 Transcription elongation regulator 1 {Human (Homo 99.15
d2doea170 Transcription elongation regulator 1 {Human (Homo 99.0
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 98.99
d2doda169 Transcription elongation regulator 1 {Human (Homo 98.97
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.96
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.91
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 98.91
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 98.84
d1uzca_69 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 98.83
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 98.79
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.74
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 98.71
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 98.59
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 98.56
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 98.47
d2cqna164 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 98.46
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 98.46
d2cqna164 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 98.35
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 98.31
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 98.27
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 98.22
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 98.2
d2b7ea156 Pre-mRNA-processing protein PRP40 {Baker's yeast ( 98.2
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 97.79
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 97.12
d1eg3a338 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 92.94
d1eg3a338 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 89.68
d2ysca126 Amyloid beta A4 precursor protein-binding family B 85.65
d2ysca126 Amyloid beta A4 precursor protein-binding family B 82.1
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=5.1e-17  Score=128.98  Aligned_cols=54  Identities=26%  Similarity=0.492  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCchHhhhccc-ccCchhhcccCH-HHHHHHHHHHHHHH
Q 003014          456 ECIIKFKEMLKERGVAPFSKWEKELPKI-VFDPRFKAIQSQ-SARRALFERYVKTR  509 (857)
Q Consensus       456 Ea~~aFk~mL~e~~V~~~stWe~~~~~i-~~DPRy~al~~~-~ERK~lFeeY~~~r  509 (857)
                      ||+++|++||++++|+++|+|+++|++| ++||||++|++. .|||++|++||.+|
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~R   56 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR   56 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhcC
Confidence            6899999999999999999999999976 679999999765 59999999999863
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure