Citrus Sinensis ID: 004094

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770----
MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
cEEEEEcccccEEcccccccccccEEEEEEEccccccccEEEEEcccccccEEEEEEcccccccEEEEEEccEEEEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccEEEEEEccccEEEEEEccEEEEEEcccccEEEEEcccccccEEEEEEcccEEEEEEcccEEEEEEEccEEEEEEEEEcccccEEEEcccccccccccccEEEEEEEcccEEEEEEccccccEEEccccccccccEEEEEEEEccEEEEEEccccEEEEEEEcccccccccccEEccccccEEEEEEEEccccEEEEEccccEEEEEcccEEEEEcccccccccccccccccccccEEEEEcccEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEEEcccccccccEEEEEEEcccccEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEccccccccEEEEEEEEEEccEEEEEEEEEEcccEEEEcccccEEEEEEccEEEEEEEEEccccccEEcccccccccEEEEEEEEEccEEEEEEccccEEEEEEEccccEEEEEEcccccccccEEEEEcccccEEEcccccEEEEEEccccccccccccEEEEEEEEcccccEEEEcccccccccccccccccEEEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHccc
cEEEEEcccHHHHccccccccccEEEEEEccccccccEEEEEEEcccccccEEEEEEcccccccHHEEEccccEEEEEEcccccccEEEEEEcccccccccEEEEEEcccEEEEEEccccEEEEEccccccccccEEEEEEcccccEEEEccccEEEEEcccccEEEccccccccEEEEEEEcccEEEEEEEccEEEEEEEccccEEEEEEEEcccEEEEEEcccccccccccEEEEEEEccccEEEEEEccccccccccccccccccccEEEEEEcccEEEEEEEcccEEEEEEEEccccccccccEEEcccccEEEEEEEEcccEEEEEEccccEEEEEcccEEEEEcccHHHHHccccccHHHccccEEEEEccEEEEEEEHHHHHccEEEccccccccEEEEEccccEEEEEEEcccccccccEEEEEEEEccccccEEEEEEccccccEEEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEEcccEEEEEEEEccccccHHHHHHccEEEEEEccEEEEEEEEcccccHHHHHHHHHccccEEEEEEEEcccEEEEEccHHEEEEEEEccccccEEEEEccccccEEEEEEEEccccEEEEcccccEEEEEcccccccHHHcccHHHEEEEEcccHHHHEEEEEEEEEccccccccccEEEEEEEccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHcc
MLTFYVLPKQLIKlnlqpdakgSYVEVLERYVNLGPIVDFCVVDlerqgqgqvvtcsgaykdgslriVRNGIGINEQASVELQGIKGMwslrsstddpfdtFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELrnewksppgysvnvATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEIScldinpigenpsysqIAAVGMWTDISVRIfslpdlnlitkehlggeiiprSVLLCAFEGISYLLCALGDGHLLNFLLnmktgeltdrkkvslgtqpitlrtfsskntthvfaasdrptviyssnkkllysnvnlkevshmcpfnsaafpdslaiakegeltigtiddIQKLHirsiplgehprrichqeqSRTFAICSLknqscaeeSEMHFVRLLDDQTFEfistypldtfeygCSILscsfsddsnvyycvgtayvlpeeneptkgRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIldddiylgaennfnlftvrknsegatdeergrlevvgeyhlgefvnrfrhgslvmrlpdsdvgqiptvIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKgvgglnheQWRSFnnekktvdaknfldgDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
mltfyvlpkqliklnlqpdakGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVtcsgaykdgsLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKtgeltdrkkvslgtqpitlrtfsskntthvfaasdrptviyssnKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYvlpeeneptKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLftvrknsegatdeergrleVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGglnheqwrsfnnekktvdaknfldgDLIESFLDLSRTRMDEISKTMNVSVEELCKRveeltrlh
MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLedeleeteieGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
**TFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILA*************GFCSQTQTLFCHDAIYNQLVQVTSGSVRLV***************GYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRK**********GRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRT***************************
MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRH*************QIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRL*
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MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFxxxxxxxxxxxxxxxxxxxxxGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query774 2.2.26 [Sep-21-2011]
Q6QNU41090 DNA damage-binding protei N/A no 0.988 0.701 0.916 0.0
Q6E7D11095 DNA damage-binding protei N/A no 0.988 0.698 0.916 0.0
Q9M0V31088 DNA damage-binding protei yes no 0.988 0.703 0.904 0.0
O495521088 DNA damage-binding protei no no 0.988 0.703 0.875 0.0
A1A4K31140 DNA damage-binding protei yes no 0.980 0.665 0.528 0.0
Q3U1J41140 DNA damage-binding protei yes no 0.980 0.665 0.528 0.0
P331941140 DNA damage-binding protei N/A no 0.980 0.665 0.527 0.0
Q165311140 DNA damage-binding protei yes no 0.980 0.665 0.527 0.0
Q805F91140 DNA damage-binding protei yes no 0.980 0.665 0.527 0.0
Q5R6491140 DNA damage-binding protei yes no 0.980 0.665 0.526 0.0
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1431 bits (3705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/767 (91%), Positives = 740/767 (96%), Gaps = 2/767 (0%)

Query: 10   QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
            QL+KLNLQPD KGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR
Sbjct: 324  QLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 383

Query: 70   NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEG 129
            NGIGINEQASVELQGIKGMWSLRS+TDDP+DTFLVVSFISETR+LAMNLEDELEETEIEG
Sbjct: 384  NGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVSFISETRVLAMNLEDELEETEIEG 443

Query: 130  FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
            F SQ QTLFCHDA+YNQLVQVTS SVRLVSSTSR+L+NEW +P GYSVNVATANA+QVLL
Sbjct: 444  FNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDLKNEWFAPVGYSVNVATANATQVLL 503

Query: 190  ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
            ATGGGHLVYLEIGDG+L EVK+A+L+Y+ISCLDINPIGENP+YS IAAVGMWTDISVRI+
Sbjct: 504  ATGGGHLVYLEIGDGVLNEVKYAKLDYDISCLDINPIGENPNYSNIAAVGMWTDISVRIY 563

Query: 250  SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
            SLPDLNLITKE LGGEIIPRSVL+C+FEGISYLLCALGDGHLLNF+L+M TGELTDRKKV
Sbjct: 564  SLPDLNLITKEQLGGEIIPRSVLMCSFEGISYLLCALGDGHLLNFVLSMSTGELTDRKKV 623

Query: 310  SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
            SLGTQPITLRTFSSK+TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFN AAFPD
Sbjct: 624  SLGTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNVAAFPD 683

Query: 370  SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK-NQSCAEESE 428
            SLAIAKEGELTIGTID+IQKLHIRSIPLGEH RRI HQEQ+RTFA+CS+K  QS A++ E
Sbjct: 684  SLAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPE 743

Query: 429  MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR 488
            MHFVRLLDDQTFEFISTYPLD FEYGCSILSCSFSDDSNVYYC+GTAYV+PEENEPTKGR
Sbjct: 744  MHFVRLLDDQTFEFISTYPLDQFEYGCSILSCSFSDDSNVYYCIGTAYVMPEENEPTKGR 803

Query: 489  ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDD-GTRELQSE 547
            ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKW  R+D G+RELQ+E
Sbjct: 804  ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWASREDGGSRELQTE 863

Query: 548  CGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDD 607
            CGHHGHILALYVQTRGDFIVVGDLMKSISLLI+KHEEGAIEERARDYNANWMSAVEILDD
Sbjct: 864  CGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDD 923

Query: 608  DIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVG 667
            DIYLGAENNFNLFTVRKNSEGATDEER RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVG
Sbjct: 924  DIYLGAENNFNLFTVRKNSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVG 983

Query: 668  QIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTV 727
            QIPTVIFGTVNGVIGVIASLPH+QYLFLEKLQTNLRKVIKGVGGL+HEQWRSF NEKKTV
Sbjct: 984  QIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTV 1043

Query: 728  DAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 774
            DAKNFLDGDLIESFLDLSR RM+EISK M+V VEEL KRVEELTRLH
Sbjct: 1044 DAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5.
Solanum lycopersicum (taxid: 4081)
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1 Back     alignment and function description
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1 Back     alignment and function description
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2 SV=2 Back     alignment and function description
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1 Back     alignment and function description
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2 Back     alignment and function description
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1 SV=1 Back     alignment and function description
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1 Back     alignment and function description
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query774
225443992 1068 PREDICTED: DNA damage-binding protein 1 0.988 0.716 0.951 0.0
225443990 1089 PREDICTED: DNA damage-binding protein 1 0.988 0.702 0.951 0.0
224061051 1088 predicted protein [Populus trichocarpa] 0.988 0.703 0.943 0.0
356525403 1068 PREDICTED: DNA damage-binding protein 1- 0.988 0.716 0.932 0.0
356512638 1068 PREDICTED: DNA damage-binding protein 1a 0.988 0.716 0.932 0.0
356525401 1089 PREDICTED: DNA damage-binding protein 1- 0.988 0.702 0.932 0.0
255571318 1033 DNA repair protein xp-E, putative [Ricin 0.988 0.740 0.938 0.0
356512636 1089 PREDICTED: DNA damage-binding protein 1a 0.988 0.702 0.932 0.0
312283457 1088 unnamed protein product [Thellungiella h 0.988 0.703 0.908 0.0
350537001 1090 DNA damage-binding protein 1 [Solanum ly 0.988 0.701 0.916 0.0
>gi|225443992|ref|XP_002280744.1| PREDICTED: DNA damage-binding protein 1 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1485 bits (3845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 729/766 (95%), Positives = 750/766 (97%), Gaps = 1/766 (0%)

Query: 10   QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
            QLIK++LQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR
Sbjct: 303  QLIKIHLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 362

Query: 70   NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEG 129
            NGIGINEQASVELQGIKGMWSLRSSTDDP DTFLVVSFISETRILAMNLEDELEETEIEG
Sbjct: 363  NGIGINEQASVELQGIKGMWSLRSSTDDPHDTFLVVSFISETRILAMNLEDELEETEIEG 422

Query: 130  FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
            FCSQ QTLFCHDA+Y+QLVQVTS SVRLV STSRELRNEWK+P GYSVNVATANA+QVLL
Sbjct: 423  FCSQVQTLFCHDAVYDQLVQVTSSSVRLVGSTSRELRNEWKAPSGYSVNVATANATQVLL 482

Query: 190  ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
            ATGGGHLVYLEIGDG LTEVKHAQLEY+ISCLDINPIGENP++SQ+AAVGMWTDISVRIF
Sbjct: 483  ATGGGHLVYLEIGDGTLTEVKHAQLEYDISCLDINPIGENPNFSQLAAVGMWTDISVRIF 542

Query: 250  SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
            SLPDLNLITKE+LGGEIIPRSVLLC+FEGI YLLCALGDGHLLNFLLNM TGELTDRKKV
Sbjct: 543  SLPDLNLITKEYLGGEIIPRSVLLCSFEGIPYLLCALGDGHLLNFLLNMSTGELTDRKKV 602

Query: 310  SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
            SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD
Sbjct: 603  SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 662

Query: 370  SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK-NQSCAEESE 428
            SLAIAKEG+LTIGTIDDIQKLHIRSIPLGEH RRICHQEQSRTFAICSLK NQS  E+SE
Sbjct: 663  SLAIAKEGDLTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNQSSTEDSE 722

Query: 429  MHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR 488
            MHF+RLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR
Sbjct: 723  MHFIRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGR 782

Query: 489  ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSEC 548
            ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSE 
Sbjct: 783  ILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSES 842

Query: 549  GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 608
            GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD
Sbjct: 843  GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDD 902

Query: 609  IYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQ 668
            IYLGAENNFN+FTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQ
Sbjct: 903  IYLGAENNFNIFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQ 962

Query: 669  IPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVD 728
            IPTVIFGTVNGVIGVIASLPH+QY+FLEKLQ NLRKVIKGVGGL+HEQWRSFNNEKKTVD
Sbjct: 963  IPTVIFGTVNGVIGVIASLPHDQYVFLEKLQANLRKVIKGVGGLSHEQWRSFNNEKKTVD 1022

Query: 729  AKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 774
            AKNFLDGDLIE+FLDL+RTRMDEISK M VSVEELCKRVEELTRLH
Sbjct: 1023 AKNFLDGDLIETFLDLNRTRMDEISKAMAVSVEELCKRVEELTRLH 1068

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225443990|ref|XP_002280735.1| PREDICTED: DNA damage-binding protein 1 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061051|ref|XP_002300334.1| predicted protein [Populus trichocarpa] gi|222847592|gb|EEE85139.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525403|ref|XP_003531314.1| PREDICTED: DNA damage-binding protein 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356512638|ref|XP_003525025.1| PREDICTED: DNA damage-binding protein 1a-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356525401|ref|XP_003531313.1| PREDICTED: DNA damage-binding protein 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255571318|ref|XP_002526608.1| DNA repair protein xp-E, putative [Ricinus communis] gi|223534048|gb|EEF35767.1| DNA repair protein xp-E, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356512636|ref|XP_003525024.1| PREDICTED: DNA damage-binding protein 1a-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|312283457|dbj|BAJ34594.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|350537001|ref|NP_001234275.1| DNA damage-binding protein 1 [Solanum lycopersicum] gi|350539125|ref|NP_001233864.1| UV damaged DNA binding protein 1 [Solanum lycopersicum] gi|55976440|sp|Q6QNU4.1|DDB1_SOLLC RecName: Full=DNA damage-binding protein 1; AltName: Full=High pigmentation protein 1; AltName: Full=UV-damaged DNA-binding protein 1 gi|38455768|gb|AAR20885.1| UV damaged DNA binding protein 1 [Solanum lycopersicum] gi|42602165|gb|AAS21683.1| UV-damaged DNA binding protein 1 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query774
TAIR|locus:21159091088 DDB1A "damaged DNA binding pro 0.988 0.703 0.891 0.0
TAIR|locus:21273681088 DDB1B "damaged DNA binding pro 0.988 0.703 0.862 0.0
UNIPROTKB|E2R9E31140 DDB1 "Uncharacterized protein" 0.524 0.356 0.573 7.4e-222
UNIPROTKB|A1A4K31140 DDB1 "DNA damage-binding prote 0.524 0.356 0.573 1.2e-221
MGI|MGI:12023841140 Ddb1 "damage specific DNA bind 0.524 0.356 0.573 1.2e-221
UNIPROTKB|F1RIE21140 DDB1 "Uncharacterized protein" 0.524 0.356 0.571 2.5e-221
UNIPROTKB|Q165311140 DDB1 "DNA damage-binding prote 0.524 0.356 0.571 3.2e-221
UNIPROTKB|P331941140 DDB1 "DNA damage-binding prote 0.524 0.356 0.571 3.2e-221
UNIPROTKB|Q5R6491140 DDB1 "DNA damage-binding prote 0.524 0.356 0.571 1.1e-220
UNIPROTKB|Q6P6Z01140 ddb1 "DNA damage-binding prote 0.524 0.356 0.578 1.1e-220
TAIR|locus:2115909 DDB1A "damaged DNA binding protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3571 (1262.1 bits), Expect = 0., P = 0.
 Identities = 682/765 (89%), Positives = 727/765 (95%)

Query:    10 QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
             QL+KLNL PDAKGSYVEVLERY+NLGPIVDFCVVDLERQGQGQVVTCSGA+KDGSLR+VR
Sbjct:   324 QLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRVVR 383

Query:    70 NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
             NGIGINEQASVELQGIKGMWSL+SS D+ FDTFLVVSFISETRILAMNL          G
Sbjct:   384 NGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEIEG 443

Query:   130 FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
             F SQ QTLFCHDA+YNQLVQVTS SVRLVSST+RELR+EW +P G++VNVATANASQVLL
Sbjct:   444 FLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQVLL 503

Query:   190 ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
             ATGGGHLVYLEIGDG LTEV+HA LEYE+SCLDINPIG+NP+YSQ+AAVGMWTDISVRIF
Sbjct:   504 ATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIF 563

Query:   250 SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
             SLP+L LITKE LGGEIIPRSVLLCAFEGISYLLCALGDGHLLNF ++  TG+L DRKKV
Sbjct:   564 SLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQMDTTTGQLKDRKKV 623

Query:   310 SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
             SLGTQPITLRTFSSK+ THVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD
Sbjct:   624 SLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 683

Query:   370 SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEM 429
             SLAIA+EGELTIGTIDDIQKLHIR+IPLGEH RRICHQEQ+RTF ICSL NQS +EESEM
Sbjct:   684 SLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICSLGNQSNSEESEM 743

Query:   430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRI 489
             HFVRLLDDQTFEF+STYPLD+FEYGCSILSCSF++D NVYYCVGTAYVLPEENEPTKGRI
Sbjct:   744 HFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDKNVYYCVGTAYVLPEENEPTKGRI 803

Query:   490 LVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 549
             LVFIVEDG+LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG
Sbjct:   804 LVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECG 863

Query:   550 HHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDI 609
             HHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGAIEERARDYNANWMSAVEILDDDI
Sbjct:   864 HHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDI 923

Query:   610 YLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQI 669
             YLGAENNFNL TV+KNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDS++GQI
Sbjct:   924 YLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSEIGQI 983

Query:   670 PTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDA 729
             PTVIFGTVNGVIGVIASLP EQY FLEKLQ++LRKVIKGVGGL+HEQWRSFNNEK+T +A
Sbjct:   984 PTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEA 1043

Query:   730 KNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 774
             +NFLDGDLIESFLDLSR +M++ISK+MNV VEELCKRVEELTRLH
Sbjct:  1044 RNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI
GO:0010100 "negative regulation of photomorphogenesis" evidence=IGI;RCA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0003002 "regionalization" evidence=RCA
GO:0006281 "DNA repair" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0009639 "response to red or far red light" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0033043 "regulation of organelle organization" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0048608 "reproductive structure development" evidence=RCA
TAIR|locus:2127368 DDB1B "damaged DNA binding protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9E3 DDB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A1A4K3 DDB1 "DNA damage-binding protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1202384 Ddb1 "damage specific DNA binding protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RIE2 DDB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q16531 DDB1 "DNA damage-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P33194 DDB1 "DNA damage-binding protein 1" [Chlorocebus aethiops (taxid:9534)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R649 DDB1 "DNA damage-binding protein 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P6Z0 ddb1 "DNA damage-binding protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ESW0DDB1_RATNo assigned EC number0.51900.98060.6657yesno
Q6E7D1DDB1_SOLCENo assigned EC number0.91650.98830.6986N/Ano
Q3U1J4DDB1_MOUSENo assigned EC number0.52880.98060.6657yesno
Q5R649DDB1_PONABNo assigned EC number0.52630.98060.6657yesno
Q805F9DDB1_CHICKNo assigned EC number0.52760.98060.6657yesno
Q6QNU4DDB1_SOLLCNo assigned EC number0.91650.98830.7018N/Ano
Q9M0V3DDB1A_ARATHNo assigned EC number0.90450.98830.7031yesno
Q16531DDB1_HUMANNo assigned EC number0.52760.98060.6657yesno
A1A4K3DDB1_BOVINNo assigned EC number0.52880.98060.6657yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
pfam03178318 pfam03178, CPSF_A, CPSF A subunit region 9e-91
pfam10433513 pfam10433, MMS1_N, Mono-functional DNA-alkylating 3e-47
COG51611319 COG5161, SFT1, Pre-mRNA cleavage and polyadenylati 4e-12
>gnl|CDD|217409 pfam03178, CPSF_A, CPSF A subunit region Back     alignment and domain information 
 Score =  287 bits (736), Expect = 9e-91
 Identities = 110/324 (33%), Positives = 169/324 (52%), Gaps = 17/324 (5%)

Query: 430 HFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFS--DDSNVYYCVGTAYVLPEENEPTKG 487
             +RL+D  T+E I T  L+  E   S+ S +    +    Y  VGTA+ L E+     G
Sbjct: 2   SCIRLVDPITWEVIDTLELEENEAVLSVKSVNLEDSEGRKEYLVVGTAFDLGEDPAARSG 61

Query: 488 RILVF----IVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRE 543
           RI VF       + KL+L+ + E KGAV +L  F G+LLA   QK+++Y       G  +
Sbjct: 62  RIYVFEIIEPETNRKLKLVHKTEVKGAVTALCEFQGRLLAGQGQKLRVYDL-----GKDK 116

Query: 544 LQSECGHHGH-ILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAV 602
           L  +          + ++  G+ I+VGDLMKS++ L Y  E   +   ARD    W++A 
Sbjct: 117 LLPKAFLDTPITYVVSLKVFGNRIIVGDLMKSVTFLGYDEEPYRLILFARDTQPRWVTAA 176

Query: 603 EIL-DDDIYLGAENNFNLFTVRKNSEGA-TDEERGRLEVVGEYHLGEFVNRFRHGSLVMR 660
           E L D D  LGA+   NL  +R + E   + +   RL    E+HLG+ V  F+ GSLV +
Sbjct: 177 EFLVDYDTILGADKFGNLHVLRYDPEAPESLDGDPRLLHRAEFHLGDIVTSFQKGSLVPK 236

Query: 661 LPDSDVGQIPTVIFGTVNGVIG-VIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRS 719
              ++    P +++GT++G IG ++  +  E+Y  L+ LQ  LR  +  + GL+   +RS
Sbjct: 237 TGGAESTSSPQILYGTLDGSIGLLVPFISEEEYRRLQHLQQQLRDELPHLCGLDPRAFRS 296

Query: 720 FNNEKKTVDAKNFLDGDLIESFLD 743
           + +    V  KN +DGDL+E FLD
Sbjct: 297 YYSRSPPV--KNVIDGDLLERFLD 318

This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs. The function of the aligned region is unknown but may be involved in RNA/DNA binding. Length = 318
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term Back     alignment and domain information
>gnl|CDD|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 774
KOG18971096 consensus Damage-specific DNA binding complex, sub 100.0
KOG18981205 consensus Splicing factor 3b, subunit 3 [RNA proce 100.0
KOG18961366 consensus mRNA cleavage and polyadenylation factor 100.0
COG51611319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 100.0
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 100.0
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 100.0
KOG2048691 consensus WD40 repeat protein [General function pr 99.13
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.11
KOG0319 775 consensus WD40-repeat-containing subunit of the 18 99.01
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 98.31
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 98.31
KOG2106626 consensus Uncharacterized conserved protein, conta 98.29
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 98.23
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 98.22
KOG1539 910 consensus WD repeat protein [General function pred 98.21
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 98.19
PRK11028330 6-phosphogluconolactonase; Provisional 98.18
KOG0647347 consensus mRNA export protein (contains WD40 repea 98.04
KOG0291893 consensus WD40-repeat-containing subunit of the 18 98.02
KOG0318603 consensus WD40 repeat stress protein/actin interac 98.01
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 98.0
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.95
KOG1539 910 consensus WD repeat protein [General function pred 97.93
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.76
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.72
KOG2055514 consensus WD40 repeat protein [General function pr 97.57
PRK11028330 6-phosphogluconolactonase; Provisional 97.56
KOG0310487 consensus Conserved WD40 repeat-containing protein 97.55
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 97.47
KOG1274 933 consensus WD40 repeat protein [General function pr 97.45
KOG1273405 consensus WD40 repeat protein [General function pr 97.44
KOG0296399 consensus Angio-associated migratory cell protein 97.41
KOG0283712 consensus WD40 repeat-containing protein [Function 97.38
KOG2106626 consensus Uncharacterized conserved protein, conta 97.37
KOG0319775 consensus WD40-repeat-containing subunit of the 18 97.36
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 97.34
PLN00181793 protein SPA1-RELATED; Provisional 97.24
KOG0282503 consensus mRNA splicing factor [Function unknown] 97.18
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 97.17
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 97.07
KOG2055514 consensus WD40 repeat protein [General function pr 97.07
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 97.03
KOG0315311 consensus G-protein beta subunit-like protein (con 96.96
KOG2048691 consensus WD40 repeat protein [General function pr 96.94
KOG1273405 consensus WD40 repeat protein [General function pr 96.9
KOG2111346 consensus Uncharacterized conserved protein, conta 96.9
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 96.88
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 96.69
KOG2110391 consensus Uncharacterized conserved protein, conta 96.51
KOG2110391 consensus Uncharacterized conserved protein, conta 96.51
KOG0306888 consensus WD40-repeat-containing subunit of the 18 96.49
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 96.47
KOG0647347 consensus mRNA export protein (contains WD40 repea 96.4
KOG0646476 consensus WD40 repeat protein [General function pr 96.39
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 96.26
KOG0282503 consensus mRNA splicing factor [Function unknown] 96.14
KOG0283712 consensus WD40 repeat-containing protein [Function 96.13
KOG0310487 consensus Conserved WD40 repeat-containing protein 96.13
KOG0289506 consensus mRNA splicing factor [General function p 96.12
KOG0263707 consensus Transcription initiation factor TFIID, s 95.91
KOG0316307 consensus Conserved WD40 repeat-containing protein 95.84
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 95.77
KOG0279315 consensus G protein beta subunit-like protein [Sig 95.71
KOG2321703 consensus WD40 repeat protein [General function pr 95.7
KOG0278334 consensus Serine/threonine kinase receptor-associa 95.69
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 95.65
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 95.61
KOG0289506 consensus mRNA splicing factor [General function p 95.56
KOG0294362 consensus WD40 repeat-containing protein [Function 95.5
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 95.41
PLN00181793 protein SPA1-RELATED; Provisional 95.37
KOG0316307 consensus Conserved WD40 repeat-containing protein 95.33
KOG0315311 consensus G-protein beta subunit-like protein (con 95.3
KOG2321 703 consensus WD40 repeat protein [General function pr 95.27
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 95.27
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 95.24
KOG0266456 consensus WD40 repeat-containing protein [General 95.22
KOG0313423 consensus Microtubule binding protein YTM1 (contai 95.18
KOG0772641 consensus Uncharacterized conserved protein, conta 95.18
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 95.18
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 95.17
PTZ00420 568 coronin; Provisional 95.09
KOG0279315 consensus G protein beta subunit-like protein [Sig 95.06
PTZ00421493 coronin; Provisional 95.01
KOG0299479 consensus U3 snoRNP-associated protein (contains W 94.95
KOG0649325 consensus WD40 repeat protein [General function pr 94.7
KOG0284464 consensus Polyadenylation factor I complex, subuni 94.68
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 94.64
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 94.64
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 94.51
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 94.41
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 94.38
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 94.32
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 94.25
KOG1407313 consensus WD40 repeat protein [Function unknown] 93.97
KOG3881412 consensus Uncharacterized conserved protein [Funct 93.81
KOG0278334 consensus Serine/threonine kinase receptor-associa 93.81
PF14727418 PHTB1_N: PTHB1 N-terminus 93.74
KOG0640430 consensus mRNA cleavage stimulating factor complex 93.68
KOG0646476 consensus WD40 repeat protein [General function pr 93.59
KOG2111346 consensus Uncharacterized conserved protein, conta 93.56
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 93.55
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 93.52
KOG0294362 consensus WD40 repeat-containing protein [Function 93.41
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 93.38
KOG0645312 consensus WD40 repeat protein [General function pr 93.31
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 93.09
KOG0772641 consensus Uncharacterized conserved protein, conta 93.09
KOG15171387 consensus Guanine nucleotide binding protein MIP1 93.08
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 93.06
KOG1274 933 consensus WD40 repeat protein [General function pr 92.89
KOG0299479 consensus U3 snoRNP-associated protein (contains W 92.81
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 92.42
KOG0266456 consensus WD40 repeat-containing protein [General 92.4
PTZ00420568 coronin; Provisional 92.28
KOG0275508 consensus Conserved WD40 repeat-containing protein 92.11
KOG0288459 consensus WD40 repeat protein TipD [General functi 92.1
KOG18971096 consensus Damage-specific DNA binding complex, sub 91.99
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 91.64
KOG14081080 consensus WD40 repeat protein [Function unknown] 91.64
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 91.63
PTZ00421493 coronin; Provisional 90.96
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 90.9
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 90.55
KOG1188376 consensus WD40 repeat protein [General function pr 90.25
KOG4328498 consensus WD40 protein [Function unknown] 89.94
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 89.64
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 89.28
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 89.09
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 89.03
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 88.42
KOG15171387 consensus Guanine nucleotide binding protein MIP1 88.4
KOG0293519 consensus WD40 repeat-containing protein [Function 87.4
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 87.33
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 87.26
KOG0296399 consensus Angio-associated migratory cell protein 87.0
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 86.65
KOG0643327 consensus Translation initiation factor 3, subunit 86.62
KOG0263707 consensus Transcription initiation factor TFIID, s 86.52
KOG18961366 consensus mRNA cleavage and polyadenylation factor 85.94
PF14779257 BBS1: Ciliary BBSome complex subunit 1 85.88
KOG3881412 consensus Uncharacterized conserved protein [Funct 85.79
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 85.74
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 85.71
KOG2096420 consensus WD40 repeat protein [General function pr 85.66
KOG0302440 consensus Ribosome Assembly protein [General funct 85.58
KOG0290364 consensus Conserved WD40 repeat-containing protein 85.58
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 85.4
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 85.36
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 85.28
PHA02713557 hypothetical protein; Provisional 84.96
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 84.91
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 84.75
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 84.62
PF14727418 PHTB1_N: PTHB1 N-terminus 84.52
KOG2096420 consensus WD40 repeat protein [General function pr 84.23
KOG1407313 consensus WD40 repeat protein [Function unknown] 84.23
KOG1188376 consensus WD40 repeat protein [General function pr 84.11
KOG4328498 consensus WD40 protein [Function unknown] 84.05
PF12234 631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 83.42
PHA03098534 kelch-like protein; Provisional 83.38
KOG0295406 consensus WD40 repeat-containing protein [Function 83.06
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 83.03
KOG0640430 consensus mRNA cleavage stimulating factor complex 82.72
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 82.64
KOG0288459 consensus WD40 repeat protein TipD [General functi 81.54
KOG0771398 consensus Prolactin regulatory element-binding pro 81.26
KOG0321 720 consensus WD40 repeat-containing protein L2DTL [Fu 80.7
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 80.69
KOG0275508 consensus Conserved WD40 repeat-containing protein 80.45
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 80.34
KOG0293519 consensus WD40 repeat-containing protein [Function 80.15
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=4e-134  Score=1092.12  Aligned_cols=765  Identities=62%  Similarity=0.994  Sum_probs=722.6

Q ss_pred             CccceecCceEEEeecCCCCCCCcEEEeeeccCcCcccceEEecCCCCCCCeEEEEEecCCCCcEEEEecCCceeEEEee
Q 004094            1 MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASV   80 (774)
Q Consensus         1 ~~~~~~gds~l~~~~~~~~~~~s~~~~~~~~~n~~Pi~D~~v~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~   80 (774)
                      |+||++|||||+||+..++. +||++.+++++|+|||.||+|++.++++|+++++|||++++|+||++|+|++.++.++.
T Consensus       321 FvGS~~gdSqLi~L~~e~d~-gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i  399 (1096)
T KOG1897|consen  321 FVGSRFGDSQLIKLNTEPDV-GSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASI  399 (1096)
T ss_pred             EEeccCCceeeEEccccCCC-CchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEe
Confidence            78999999999999998876 89999999999999999999999988899999999999999999999999999999999


Q ss_pred             eCCCcceeeeeecCCCCCCceEEEEEecCceEEEEecCCCCeeeeeecCccccCcceeeeecCCCeEEEEecCcEEEEec
Q 004094           81 ELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSS  160 (774)
Q Consensus        81 ~l~~~~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~  160 (774)
                      ++||+.++|+++...++++|.||++||+++|++|.+.+  +++|++++||.++++||||+.+..+.++|||+++||+++.
T Consensus       400 ~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~--e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss  477 (1096)
T KOG1897|consen  400 DLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISE--EVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSS  477 (1096)
T ss_pred             ecCCccceeEeeccccccCCcEEEEEeccceEEEEEcc--ceEEeccccccccCceEEEEccCCceEEEEecccEEEEcc
Confidence            99999999999977777889999999999999999987  4999999999999999999999888899999999999987


Q ss_pred             CCCceeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEE
Q 004094          161 TSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGM  240 (774)
Q Consensus       161 ~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~  240 (774)
                      +.  +.++|.+|.+..|..|+++..+++||..++.+.|+++..+.+.++.+..++.||+|++|+|.++++.++.+++||+
T Consensus       478 ~~--~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~  555 (1096)
T KOG1897|consen  478 AG--LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGL  555 (1096)
T ss_pred             hh--hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEe
Confidence            63  7899999998888888899889999998889999999887799999999999999999999887766788999999


Q ss_pred             ecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecC-eeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEE
Q 004094          241 WTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEG-ISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLR  319 (774)
Q Consensus       241 ~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~-~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~  319 (774)
                      |.+-.+.+..+||+.++..+.++.+.+|||+++..+++ ..+|+|+++||.++.|.++..+|.+.++|+.++|++|+.|+
T Consensus       556 Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr  635 (1096)
T KOG1897|consen  556 WSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLR  635 (1096)
T ss_pred             ecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEE
Confidence            97778888889999998888888889999999998876 88999999999999999999999999999999999999999


Q ss_pred             EEEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCC
Q 004094          320 TFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGE  399 (774)
Q Consensus       320 ~~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~  399 (774)
                      .|++.+.+.+||+++|||++|..++++.|+|++.+.+..+|||++.++++++++++++.|.|++++..+++++|++|+++
T Consensus       636 ~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~  715 (1096)
T KOG1897|consen  636 TFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGE  715 (1096)
T ss_pred             EEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCC
Confidence            99988899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEEecCCCEEEEEEeccCCC----CCceeeeEEEEEECCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEee
Q 004094          400 HPRRICHQEQSRTFAICSLKNQSC----AEESEMHFVRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTA  475 (774)
Q Consensus       400 tp~~i~y~~~~~~~~v~~~~~~~~----~~~~~~~~l~l~d~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~  475 (774)
                      +||||+|++.+.+|.|+|.+.+..    +++.+.+.++++|++|++++..++|+++|.++|+++++|.++...|++|||+
T Consensus       716 ~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~  795 (1096)
T KOG1897|consen  716 SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG  795 (1096)
T ss_pred             ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence            999999999999999999997533    4577899999999999999999999999999999999999988999999999


Q ss_pred             eeCCCCCCCcceEEEEEEEeC-CeEEEEEEEeecCceeEeccccCeEEEEECCEEEEEEeeecCCCchhhhhhcccccce
Q 004094          476 YVLPEENEPTKGRILVFIVED-GKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHI  554 (774)
Q Consensus       476 ~~~~~e~~~~~Grl~v~~i~~-~kl~~~~~~~~~g~v~~i~~~~~~lv~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~  554 (774)
                      +..|+|.+|..|||.+|+..+ ++|+++++++++|+|++++.|+|+|++|+|+.|.+|+|..    +++|...|....+.
T Consensus       796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~----~~eLr~e~~~~~~~  871 (1096)
T KOG1897|consen  796 LVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTT----ERELRIECNISNPI  871 (1096)
T ss_pred             eeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccc----cceehhhhcccCCe
Confidence            999999999999999999997 8999999999999999999999999999999999999953    35677677777788


Q ss_pred             EEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEEEEEeeCCeEEEEccCCcEEEEeeCCCCCCcccc
Q 004094          555 LALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEER  634 (774)
Q Consensus       555 ~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~  634 (774)
                      .+.+|++.+|.|+|||+|+|+++++|+.+++.|+++|||+.|+|++++++++++.++++|++||+++++++.+++++.++
T Consensus       872 ~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR  951 (1096)
T KOG1897|consen  872 IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEER  951 (1096)
T ss_pred             EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeEEEEEcCcccceEEeeeeeecCCCCCCCCccEEEEEccccceEEEEecChhHHHHHHHHHHHHHhcccCCCCCCc
Q 004094          635 GRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNH  714 (774)
Q Consensus       635 ~~L~~~~~f~lg~~v~~~~~~~~~~~~~~~~~~~~~~il~~t~~Gsi~~i~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~  714 (774)
                      +.|+..+.||+|+.|++|+.+++.+..+++.....++++|||.+|+||.+..++++.+.+|..||++|++.++++||++|
T Consensus       952 ~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~sl~~d~~~fL~~Lq~~irk~i~s~gglsH 1031 (1096)
T KOG1897|consen  952 QILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIVSLPQDWYDFLEELQRRIRKVIKSVGGLSH 1031 (1096)
T ss_pred             hcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEEecCcchhHHHHHHHHHHHHhhcccCCcch
Confidence            99999999999999999999999987445545567889999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcccCCCCcEEehhHHHHHhcCCHHHHHHHHHhcCCC-----HHHHHHHHHHHhccC
Q 004094          715 EQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVS-----VEELCKRVEELTRLH  774 (774)
Q Consensus       715 ~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~~~-----~~~i~~~l~~l~~~~  774 (774)
                      ..||+++.+.+..|++|||||||+|+|++|+.+++.+|++++..+     +++|.+.||||+|||
T Consensus      1032 ~~yrsf~~e~~~~P~~gfIDGDLiEsfl~l~~~~~~~i~~~~~~~~~~~s~~el~k~vEel~rlh 1096 (1096)
T KOG1897|consen 1032 MDYRSFEFEKRTSPVKGFIDGDLIESFLDLSRSKMREIVRGLEHTESLASVQELLKIVEELTRLH 1096 (1096)
T ss_pred             hhHhhhhcccccCCCcCcccchHHHhhhccCHHHHHHHHhhcccccccCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999755     999999999999999

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PF14779 BBS1: Ciliary BBSome complex subunit 1 Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
3e0c_A1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 0.0
4e54_A1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 0.0
3ei1_A1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 0.0
4a0l_A1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 0.0
4a0b_A1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 0.0
4a0a_A1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 0.0
4a08_A1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 0.0
4a11_A1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 0.0
3ei4_A1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 0.0
2b5l_A1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 0.0
3i7h_A1143 Crystal Structure Of Ddb1 In Complex With The H-Box 0.0
2b5n_A323 Crystal Structure Of The Ddb1 Bpb Domain Length = 3 4e-98
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure 
Iteration: 1

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/815 (52%), Positives = 550/815 (67%), Gaps = 56/815 (6%)
Query: 10   QLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVR 69
            QL+KLN+  + +GSYV  +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI+R
Sbjct: 332  QLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR 391
Query: 70   NGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLXXXXXXXXXXG 129
            NGIGI+E AS++L GIKG+W LRS  +   D  LV+SF+ +TR+L +N           G
Sbjct: 392  NGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETELMG 450
Query: 130  FCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQVLL 189
            F    QT FC +  + QL+Q+TS SVRLVS   + L +EWK P   +++VA+ N+SQV++
Sbjct: 451  FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV 510
Query: 190  ATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIF 249
            A G   L YL+I    L ++ H ++E+E++CLDI P+G++   S + A+G+WTDIS RI 
Sbjct: 511  AVGRA-LYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 569
Query: 250  SLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKV 309
             LP   L+ KE LGGEIIPRS+L+  FE   YLLCALGDG L  F LN++TG L+DRKKV
Sbjct: 570  KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 629
Query: 310  SLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPD 369
            +LGTQP  LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS  +PD
Sbjct: 630  TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 689
Query: 370  SLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLK---------- 419
            SLA+A    LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S +          
Sbjct: 690  SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 749
Query: 420  -----------------------------NQSCAEESEMHFVRLLDDQTFEFISTYPLDT 450
                                           S  EE E+H + ++D  TFE +  +    
Sbjct: 750  TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ 809
Query: 451  FEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGA 510
             EY  S++SC    D N Y+ VGTA V PEE EP +GRI+VF   DGKLQ +AEKE KGA
Sbjct: 810  NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 869
Query: 511  VYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGD 570
            VYS+  FNGKLLA+IN  ++LY+W       +EL++EC H+ +I+ALY++T+GDFI+VGD
Sbjct: 870  VYSMVEFNGKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGD 925
Query: 571  LMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGAT 630
            LM+S+ LL YK  EG  EE ARD+N NWMSAVEILDDD +LGAEN FNLF  +K+S   T
Sbjct: 926  LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATT 985
Query: 631  DEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPH 689
            DEER  L+ VG +HLGEFVN F HGSLVM+ L ++      +V+FGTVNG+IG++ SL  
Sbjct: 986  DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1045
Query: 690  EQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRM 749
              Y  L  +Q  L KVIK VG + H  WRSF+ E+KT  A  F+DGDLIESFLD+SR +M
Sbjct: 1046 SWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKM 1105
Query: 750  DEISKTMN----------VSVEELCKRVEELTRLH 774
             E+   +            + ++L K VEELTR+H
Sbjct: 1106 QEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
 Score =  677 bits (1746), Expect = 0.0
 Identities = 428/817 (52%), Positives = 557/817 (68%), Gaps = 56/817 (6%)

Query: 8    PKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRI 67
              QL+KLN+  + +GSYV  +E + NLGPIVD CVVDLERQGQGQ+VTCSGA+K+GSLRI
Sbjct: 348  DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407

Query: 68   VRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEI 127
            +RNGIGI+E AS++L GIKG+W LRS  +   D  LV+SF+ +TR+L +N  +E+EETE+
Sbjct: 408  IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLN-GEEVEETEL 466

Query: 128  EGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSSTSRELRNEWKSPPGYSVNVATANASQV 187
             GF    QT FC +  + QL+Q+TS SVRLVS   + L +EWK P   +++VA+ N+SQV
Sbjct: 467  MGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQV 526

Query: 188  LLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVR 247
            ++A G   L YL+I    L ++ H ++E+E++CLDI P+G++   S + A+G+WTDIS R
Sbjct: 527  VVAVGR-ALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISAR 585

Query: 248  IFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRK 307
            I  LP   L+ KE LGGEIIPRS+L+  FE   YLLCALGDG L  F LN++TG L+DRK
Sbjct: 586  ILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRK 645

Query: 308  KVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAF 367
            KV+LGTQP  LRTF S +TT+VFA SDRPTVIYSSN KL++SNVNLKEV++MCP NS  +
Sbjct: 646  KVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGY 705

Query: 368  PDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQ------ 421
            PDSLA+A    LTIGTID+IQKLHIR++PL E PR+IC+QE S+ F + S + +      
Sbjct: 706  PDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSG 765

Query: 422  ---------------------------------SCAEESEMHFVRLLDDQTFEFISTYPL 448
                                             S  EE E+H + ++D  TFE +  +  
Sbjct: 766  GTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQF 825

Query: 449  DTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETK 508
               EY  S++SC    D N Y+ VGTA V PEE EP +GRI+VF   DGKLQ +AEKE K
Sbjct: 826  LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVK 885

Query: 509  GAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVV 568
            GAVYS+  FNGKLLA+IN  ++LY+W        EL++EC H+ +I+ALY++T+GDFI+V
Sbjct: 886  GAVYSMVEFNGKLLASINSTVRLYEWTTEK----ELRTECNHYNNIMALYLKTKGDFILV 941

Query: 569  GDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEG 628
            GDLM+S+ LL YK  EG  EE ARD+N NWMSAVEILDDD +LGAEN FNLF  +K+S  
Sbjct: 942  GDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAA 1001

Query: 629  ATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSDVGQIPTVIFGTVNGVIGVIASL 687
             TDEER  L+ VG +HLGEFVN F HGSLVM+   ++      +V+FGTVNG+IG++ SL
Sbjct: 1002 TTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSL 1061

Query: 688  PHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRT 747
                Y  L  +Q  L KVIK VG + H  WRSF+ E+KT  A  F+DGDLIESFLD+SR 
Sbjct: 1062 SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRP 1121

Query: 748  RMDEISKTMN----------VSVEELCKRVEELTRLH 774
            +M E+   +            + ++L K VEELTR+H
Sbjct: 1122 KMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query774
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 100.0
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 99.25
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 99.15
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 99.04
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 98.93
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 98.91
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.86
2ymu_A577 WD-40 repeat protein; unknown function, two domain 98.79
2ymu_A577 WD-40 repeat protein; unknown function, two domain 98.7
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 98.59
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 98.54
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 98.51
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.48
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 98.47
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 98.45
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 98.43
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 98.42
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 98.42
4g56_B357 MGC81050 protein; protein arginine methyltransfera 98.41
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 98.38
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 98.38
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 98.37
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 98.36
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.33
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 98.32
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 98.32
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 98.32
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.31
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 98.31
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 98.29
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 98.28
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 98.28
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 98.25
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 98.21
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 98.2
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 98.2
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 98.2
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 98.19
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 98.16
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 98.14
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 98.12
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 98.11
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 98.1
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 98.1
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 98.1
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 98.09
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 98.08
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 98.07
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 98.06
3ow8_A321 WD repeat-containing protein 61; structural genomi 98.04
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 98.02
4e54_B435 DNA damage-binding protein 2; beta barrel, double 98.02
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 98.01
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 97.99
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 97.99
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 97.94
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.92
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.92
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 97.92
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 97.91
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 97.91
3jrp_A379 Fusion protein of protein transport protein SEC13 97.9
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 97.89
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.88
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 97.87
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 97.87
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.81
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 97.81
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 97.81
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 97.79
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 97.79
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 97.79
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 97.79
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.76
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 97.76
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 97.76
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 97.74
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.72
4e54_B435 DNA damage-binding protein 2; beta barrel, double 97.72
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 97.7
3jrp_A379 Fusion protein of protein transport protein SEC13 97.69
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 97.67
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 97.66
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.65
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.63
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 97.62
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 97.62
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 97.6
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.59
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 97.58
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 97.58
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 97.58
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.57
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 97.56
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 97.54
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 97.47
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 97.47
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 97.45
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 97.42
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 97.41
4g56_B357 MGC81050 protein; protein arginine methyltransfera 97.4
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 97.39
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.35
3jro_A 753 Fusion protein of protein transport protein SEC13 97.34
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 97.34
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 97.28
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 97.25
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 97.25
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 97.23
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 97.21
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 97.16
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 97.06
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 97.04
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 97.03
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 97.03
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 97.03
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 97.01
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 96.99
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 96.98
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 96.98
2xyi_A430 Probable histone-binding protein CAF1; transcripti 96.94
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 96.9
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 96.9
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 96.88
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 96.86
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 96.85
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.83
2pm7_B297 Protein transport protein SEC13, protein transport 96.83
2pm7_B297 Protein transport protein SEC13, protein transport 96.83
3jro_A 753 Fusion protein of protein transport protein SEC13 96.8
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 96.65
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 96.64
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 96.58
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 96.57
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 96.57
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 96.47
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 96.4
2xyi_A430 Probable histone-binding protein CAF1; transcripti 96.38
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 96.12
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 96.06
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 95.99
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 95.77
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.76
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 95.18
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 94.92
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 94.54
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 94.31
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 94.31
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 94.18
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 94.13
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 93.93
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 93.92
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 93.88
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 93.42
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 93.4
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 93.33
2j04_A 588 TAU60, YPL007P, hypothetical protein YPL007C; beta 93.17
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 92.82
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 92.27
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 92.16
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 91.92
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 91.71
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 90.99
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 89.66
2ece_A462 462AA long hypothetical selenium-binding protein; 88.51
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 88.37
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 88.29
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 88.02
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 87.99
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 87.91
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 87.52
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 87.48
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 86.83
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 86.48
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 86.28
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 86.23
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 85.91
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 84.99
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 84.81
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 84.64
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 83.85
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 83.83
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 83.82
4a2l_A795 BT_4663, two-component system sensor histidine kin 83.33
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 83.0
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 82.55
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 82.29
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 81.61
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 81.54
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 81.38
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
Probab=100.00  E-value=1.2e-128  Score=1176.44  Aligned_cols=768  Identities=56%  Similarity=0.928  Sum_probs=704.7

Q ss_pred             CccceecCceEEEeecCCCCCCCcEEEeeeccCcCcccceEEecCCCCCCCeEEEEEecCCCCcEEEEecCCceeEEEee
Q 004094            1 MLTFYVLPKQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASV   80 (774)
Q Consensus         1 ~~~~~~gds~l~~~~~~~~~~~s~~~~~~~~~n~~Pi~D~~v~~~~~~~~~~l~~~sG~g~~g~L~~lr~gi~~~~~~~~   80 (774)
                      |+||++|||+|+|+...++...+|++++|+++|||||+||++++..++++++|++|||+|++|+|+++|+|++++++++.
T Consensus       341 FvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~  420 (1158)
T 3ei3_A          341 FVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASI  420 (1158)
T ss_dssp             EEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEE
T ss_pred             EEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEee
Confidence            78999999999999988776778899999999999999999999877788999999999999999999999999999999


Q ss_pred             eCCCcceeeeeecCCCCCCceEEEEEecCceEEEEecCCCCeeeeeecCccccCcceeeeecCCCeEEEEecCcEEEEec
Q 004094           81 ELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQTQTLFCHDAIYNQLVQVTSGSVRLVSS  160 (774)
Q Consensus        81 ~l~~~~~iw~~~~~~~~~~~~~li~S~~~~T~vl~~~~~~~~~e~~~~~f~~~~~Tl~~~~~~~~~~vQVT~~~i~l~~~  160 (774)
                      ++||++++|+++...++++|.||++|++++|+||+++++ +++|++++||.++++||+|++++++.+||||+++||+++.
T Consensus       421 ~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~  499 (1158)
T 3ei3_A          421 DLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQ  499 (1158)
T ss_dssp             CCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETT-EEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEES
T ss_pred             cCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCC-cccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEEC
Confidence            999999999999765667899999999999999999764 7999999999999999999999999999999999999998


Q ss_pred             CCCceeeeEeCCCCCcEEEEEECCCEEEEEEcCCeEEEEEEcCceEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEE
Q 004094          161 TSRELRNEWKSPPGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGM  240 (774)
Q Consensus       161 ~~~~~~~~~~~~~~~~I~~a~~~~~~lvv~~~~~~~~~~~~~~~~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~  240 (774)
                      +....+++|.+|.|.+|++|++++.+++++. +++++||+++++++.+..+.+++.+|+|+++.+.+++...+.+++||+
T Consensus       500 ~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~  578 (1158)
T 3ei3_A          500 EPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL  578 (1158)
T ss_dssp             SSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEE
Confidence            7666899999999999999999999999995 889999999988888888899999999999988776666789999999


Q ss_pred             ecCCEEEEEECCCCCeeEEecCCCccCceeEEeeeecCeeEEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEE
Q 004094          241 WTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRT  320 (774)
Q Consensus       241 ~~~~~i~i~~l~~~~~~~~~~l~~~~~p~si~~~~~~~~~~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~  320 (774)
                      |.+++++||+|++++.++.+.++.+..|+|+++..+++..+|++|++||.++.|.++..+|.+.+.|++.+|++|++|++
T Consensus       579 ~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~  658 (1158)
T 3ei3_A          579 WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRT  658 (1158)
T ss_dssp             TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEE
T ss_pred             CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEE
Confidence            99999999999999999999998778999999999988899999999999999999998899999999999999999999


Q ss_pred             EEeCCcceEEEecCCCeEEEecCCcEEEeeecccCceeeecccCCCCCCcEEEEeCCeEEEEEEcCCCCeEEEEEeCCCc
Q 004094          321 FSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEH  400 (774)
Q Consensus       321 ~~~~~~~~v~~~~~~p~~l~~~~~~~~~~~~~~~~i~~~~~f~~~~~~~~l~~~~~~~l~i~~l~~~~~~~~~~i~l~~t  400 (774)
                      +...+..+||++|++||++|.+++++.++|++..++.++++|++++||+++++++++.|+|+++++.++|++++|||++|
T Consensus       659 ~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~T  738 (1158)
T 3ei3_A          659 FRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES  738 (1158)
T ss_dssp             EESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSE
T ss_pred             EeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCC
Confidence            98777789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEecCCCEEEEEEeccC---CC------------------------------------CCceeeeEEEEEECCCce
Q 004094          401 PRRICHQEQSRTFAICSLKNQ---SC------------------------------------AEESEMHFVRLLDDQTFE  441 (774)
Q Consensus       401 p~~i~y~~~~~~~~v~~~~~~---~~------------------------------------~~~~~~~~l~l~d~~~~~  441 (774)
                      |||++|||++++|+|++++.+   ..                                    +.+.+.++++++||.+|+
T Consensus       739 prri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~  818 (1158)
T 3ei3_A          739 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE  818 (1158)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred             ceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence            999999999999999997742   10                                    112468999999999999


Q ss_pred             EEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEeccccCeE
Q 004094          442 FISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKL  521 (774)
Q Consensus       442 ~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~~~~~l  521 (774)
                      ++++++|+++|.++|++.+.|.+++++|++|||++..++|+.+++|||++|++.++||+++++++++|+|+|+++++|+|
T Consensus       819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~L  898 (1158)
T 3ei3_A          819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL  898 (1158)
T ss_dssp             EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEE
T ss_pred             EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEE
Confidence            99999999999999999999988778999999999998899999999999999999999999999999999999999999


Q ss_pred             EEEECCEEEEEEeeecCCCchhhhhhcccccceEEEEEEEeCCEEEEEeccccEEEEEEEccCCeEEEEeccCCcceeEE
Q 004094          522 LAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSA  601 (774)
Q Consensus       522 v~~~g~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~I~vgD~~~Sv~~~~~~~~~~~l~~~a~D~~~~~v~~  601 (774)
                      ++|+|++|++|+|..+    +.|...+.....+.++++++.||+|+|||+++|+++++|++++++|.++|||+.++|+++
T Consensus       899 la~ig~~l~vy~l~~~----~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta  974 (1158)
T 3ei3_A          899 LASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA  974 (1158)
T ss_dssp             EEEETTEEEEEEECTT----SCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEE
T ss_pred             EEEcCCEEEEEECCCC----ceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEE
Confidence            9999999999998521    223312221122346789999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCeEEEEccCCcEEEEeeCCCCCCccccceeeeEEEEEcCcccceEEeeeeeecCC-CCCCCCccEEEEEccccc
Q 004094          602 VEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSDVGQIPTVIFGTVNGV  680 (774)
Q Consensus       602 ~~~l~~~~~l~~D~~gnl~~l~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~~~~~~~-~~~~~~~~~il~~t~~Gs  680 (774)
                      +++|++++++++|++||++++++++++.++.++++|+..++||+|+.||+|+++++.+..+ +......+.++|+|.+|+
T Consensus       975 ~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~Gs 1054 (1158)
T 3ei3_A          975 VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGM 1054 (1158)
T ss_dssp             EEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSC
T ss_pred             EEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCE
Confidence            9999999999999999999999999888888889999999999999999999998875432 222335678999999999


Q ss_pred             eEEEEecChhHHHHHHHHHHHHHhcccCCCCCCcccccccccCcccCCCCcEEehhHHHHHhcCCHHHHHHHHHhcC---
Q 004094          681 IGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMN---  757 (774)
Q Consensus       681 i~~i~~l~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~~~~~~~~~~~iDGdll~~fl~l~~~~q~~i~~~~~---  757 (774)
                      ||.+.|++++.|++|..||++|+..++++||++|++||+++++.+..|+++|||||||++|++|+.++|++||++++   
T Consensus      1055 Ig~l~pl~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~~~~~~~iDGdLle~fl~L~~~~q~~ia~~l~~~~ 1134 (1158)
T 3ei3_A         1055 IGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDD 1134 (1158)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCEECCBSEEEHHHHHGGGGSCHHHHHHHCCCC----
T ss_pred             EEEEEEcCHHHHHHHHHHHHHHHhhCCCCcCCCHHHhhCeecccccCCCCccCcHHHHHHHHcCCHHHHHHHHHhhCccc
Confidence            99999999999999999999999999999999999999999876667889999999999999999999999999997   


Q ss_pred             -------CCHHHHHHHHHHHhccC
Q 004094          758 -------VSVEELCKRVEELTRLH  774 (774)
Q Consensus       758 -------~~~~~i~~~l~~l~~~~  774 (774)
                             .+++||.++||+|+|||
T Consensus      1135 ~~~~~~~~t~~ei~k~~e~l~r~h 1158 (1158)
T 3ei3_A         1135 GSGMKREATADDLIKVVEELTRIH 1158 (1158)
T ss_dssp             --------CCHHHHHHHHHHGGGC
T ss_pred             cccccCCCCHHHHHHHHHHHhhcC
Confidence                   58999999999999999
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 774
d1qksa2432 b.70.2.1 (A:136-567) C-terminal (heme d1) domain o 0.001
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 Back     information, alignment and structure

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (92), Expect = 0.001
 Identities = 39/394 (9%), Positives = 102/394 (25%), Gaps = 60/394 (15%)

Query: 383 TIDDIQKLHIRSIPLGEHPRRICHQEQSRT-FAICSLKNQSCAEESEMHFVRLLDDQTFE 441
            + ++++     +   + P +  +       F++            +   + L+D  T+E
Sbjct: 3   GMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVT---------LRDAGQIALIDGSTYE 53

Query: 442 FISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQL 501
                     + G ++     S      + +G             G++ +  +   +   
Sbjct: 54  -----IKTVLDTGYAVHISRLSASGRYLFVIG-----------RDGKVNMIDLWMKEPTT 97

Query: 502 IAE----KETKGAVYSLN-AFNGKLLAAINQKIQLYKWMLRDDGTRELQSEC-------- 548
           +AE     E +    S    +  K   A       Y  M  +    +             
Sbjct: 98  VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 157

Query: 549 --GHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILD 606
                  + A+         +V  + ++  +L+  + +    +        ++    +  
Sbjct: 158 EYHPEPRVAAILASHYRPEFIVN-VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216

Query: 607 DDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDV 666
              Y          T           +    ++V     G        G+  +      V
Sbjct: 217 SHRY--------FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV 268

Query: 667 GQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKT 726
                +     +  + +I + P        K+          +GG +       N++   
Sbjct: 269 WATSHM----GDDSVALIGTDPEGHPDNAWKIL----DSFPALGGGSLFIKTHPNSQYLY 320

Query: 727 VDAKNFLDGDLIES--FLDLSRTRMDEISKTMNV 758
           VDA    + ++  S    D+     D        
Sbjct: 321 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 354

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query774
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.71
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 98.62
d1tbga_340 beta1-subunit of the signal-transducing G protein 98.55
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 98.51
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.45
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 98.38
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 98.25
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 98.18
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 98.13
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 98.12
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 97.82
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 97.74
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 97.69
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 97.65
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 97.65
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 97.64
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 97.52
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 97.5
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 97.5
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 97.5
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.5
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 97.42
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 97.39
d1tbga_340 beta1-subunit of the signal-transducing G protein 97.29
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 97.23
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 97.02
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.01
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 96.98
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.9
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 96.79
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 96.53
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 96.53
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 96.44
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 96.14
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 95.89
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 95.47
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 95.01
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 94.37
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 91.13
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 90.43
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 89.95
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 89.46
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 86.24
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 85.28
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 80.86
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5e-05  Score=77.31  Aligned_cols=284  Identities=9%  Similarity=0.058  Sum_probs=160.6

Q ss_pred             eEEEEEeccCCceeEEEEeCCCCCCCCCcceEEEEEecCCEEEEEECCCCC---eeEEecC-CCccCceeEEeeeecCee
Q 004094          205 ILTEVKHAQLEYEISCLDINPIGENPSYSQIAAVGMWTDISVRIFSLPDLN---LITKEHL-GGEIIPRSVLLCAFEGIS  280 (774)
Q Consensus       205 ~l~~~~~~~l~~~is~l~~~~~~~~~~~~~~~~vg~~~~~~i~i~~l~~~~---~~~~~~l-~~~~~p~si~~~~~~~~~  280 (774)
                      ...++........|+|+++++      ...+++.| . +|.|+||++....   .+..... .......++++.+  +..
T Consensus        41 ~~~~~~~~~H~~~V~~v~fs~------~g~~latg-~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~--dg~  110 (337)
T d1gxra_          41 HARQINTLNHGEVVCAVTISN------PTRHVYTG-G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGC  110 (337)
T ss_dssp             EEEEEEEECCSSCCCEEEECS------SSSEEEEE-C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSS
T ss_pred             CceEEEECCCCCcEEEEEECC------CCCEEEEE-E-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC--CCC
Confidence            344455556778899999975      25677765 4 7899999986532   2221111 1112234554432  456


Q ss_pred             EEEEEeCCCcEEEEEEecCCCccccceeeecCCCCeEEEEEEeCCcceEEEecCCCeE-EEecC-CcEEE-eeecccCce
Q 004094          281 YLLCALGDGHLLNFLLNMKTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTV-IYSSN-KKLLY-SNVNLKEVS  357 (774)
Q Consensus       281 ~L~vgl~~G~l~~y~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~~~~p~~-l~~~~-~~~~~-~~~~~~~i~  357 (774)
                      +|++|..||.+..|.+...++.+.  ........++....+.. +...++.++....+ ++... ++... .......+.
T Consensus       111 ~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  187 (337)
T d1gxra_         111 TLIVGGEASTLSIWDLAAPTPRIK--AELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEE--EEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEEeecccccccccccccccccc--ccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            789999999999998765333221  11122233444333332 22333334443333 44333 33221 111223444


Q ss_pred             eeecccCCCCCCcEEEEe-CCeEEEEEEcCCCCeEEEEEeCCCcccEEEEecCCCEEEEEEeccCCCCCceeeeEEEEEE
Q 004094          358 HMCPFNSAAFPDSLAIAK-EGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSLKNQSCAEESEMHFVRLLD  436 (774)
Q Consensus       358 ~~~~f~~~~~~~~l~~~~-~~~l~i~~l~~~~~~~~~~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~l~l~d  436 (774)
                      +++ |+.  ....++... ++.+.+..+.+..  ..+.......+..++++|..+.+++++.+.          .++++|
T Consensus       188 ~l~-~s~--~~~~~~~~~~d~~v~i~d~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~----------~i~i~d  252 (337)
T d1gxra_         188 CID-ISN--DGTKLWTGGLDNTVRSWDLREGR--QLQQHDFTSQIFSLGYCPTGEWLAVGMESS----------NVEVLH  252 (337)
T ss_dssp             EEE-ECT--TSSEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEECTTSSEEEEEETTS----------CEEEEE
T ss_pred             ccc-ccc--cccccccccccccccccccccce--eecccccccceEEEEEcccccccceecccc----------cccccc
Confidence            433 221  122344444 6778887776543  455667778888999999988888777543          688899


Q ss_pred             CCCceEEEEEECCCCceEEEEEEEEEcCCCceEEEEEeeeeCCCCCCCcceEEEEEEEeCCeEEEEEEEeecCceeEecc
Q 004094          437 DQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNA  516 (774)
Q Consensus       437 ~~~~~~i~~~~~~~~E~~~si~~~~~~~~~~~~i~VGT~~~~~~e~~~~~Grl~v~~i~~~kl~~~~~~~~~g~v~~i~~  516 (774)
                      ..+.+....  ......+.++.   +..+ .++++.|.          ..|.|++|++..++..  ......++|++++-
T Consensus       253 ~~~~~~~~~--~~~~~~i~~v~---~s~~-g~~l~s~s----------~Dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~  314 (337)
T d1gxra_         253 VNKPDKYQL--HLHESCVLSLK---FAYC-GKWFVSTG----------KDNLLNAWRTPYGASI--FQSKESSSVLSCDI  314 (337)
T ss_dssp             TTSSCEEEE--CCCSSCEEEEE---ECTT-SSEEEEEE----------TTSEEEEEETTTCCEE--EEEECSSCEEEEEE
T ss_pred             ccccccccc--cccccccceEE---ECCC-CCEEEEEe----------CCCeEEEEECCCCCEE--EEccCCCCEEEEEE
Confidence            877665432  23334455543   4433 35677665          2389999998765433  33456889998874


Q ss_pred             c-cCe-EEEEEC-CEEEEEEe
Q 004094          517 F-NGK-LLAAIN-QKIQLYKW  534 (774)
Q Consensus       517 ~-~~~-lv~~~g-~~l~v~~~  534 (774)
                      - ++. |+.+.. ++|++|++
T Consensus       315 s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         315 SVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSCEEEEEETTSCEEEEEE
T ss_pred             eCCCCEEEEEeCCCeEEEEEE
Confidence            4 454 554443 67999874
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure