Citrus Sinensis ID: 004229

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760------
MDLHLKNLFGRFQDQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTGSRETIRIPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVSHPPGQVYDERASSTSHSTPTKYAEPTKEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVPTNLSGTTSGISSRVRVNLLRGVYQEEATYLPSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITHPVTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRRGLLIDPAAVPERLEVLARAA
cccHHHHHHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEcccccccEEEEEEcccccccccccccccccccccEEEEEEEccccccccHHHHHHHccccccccccccEEEEEEEcccccEEcccccHHHHHHHHHHHHHHHHHHccEEEcccccccccEEEEEcccEEEEcccccccccccccEEEEEEEccccccHHHHccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEEccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEEEEEEcccccccccccHHHHHHHccccccEEEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEccccccccccHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEccccccccEEEEEEccEEEEEEEEEEEcccccccEEEEEEEccccccccccEEEEEccEEEEEcccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHHHccccHHHcccccEEEEEEccccccccccccccEEEEEcccccccEEEEEccHHHHHHHccccccccccccEEEEEEcccHHHccccHHHHHHHccEEEcccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccEEEEEEccccHHHHccccEEEEEEEccccccHHcccccccccccccccccccccccccHHHcccHcHcEEEEEEccccEEEccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHccccccccccHHHHHHccHHHHHHHHHHHcccccHHHHcccEEEEEEEcccHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccEEEEEEcEEcccccccccccEEEEcccccccccccHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHcccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHcccccccccEEEcccccccEEEEEEcccccccEEEEEEEcccEEEEEcccccccccHHHHHHHHccccccccHHEEEEEEcccEEEEEEccccccccccccHcccHHHHHHHHHcc
MDLHLKNLFGrfqdqfgsgpglgpgsgtclmkvegiapNCIKSIYRAAAALYrtepwkrlhpghlfgirvgkdsdwsnkkqpfpcaqfvggdggdigIYMFrnendgkrmtgsretiripnveLLRVtfeteslmfpsnkKMIRSLSleasgtdrfpvidvtrcttsgelwfrnptlEELRFVYAFMRAISLVhpllqvdtdggpkwsrllhfepfietvdvqwppemakgndlvavtvshppgqvyderasstshstptkyaeptkeetfadvrmnsngglrqcatcekevhgdqsvccgrcraviycsstcqkqqwkdthksECGLYKAMMEREEELAMKIFmfpcsadqpckwLEALGVhqkgmwrrkcscyshcpfgllpvkgglwdlwgglddeeypqdapyhnhirdgisspillsgwseyynlrslplsspvadilshpLTVYYILTALSISSKNRLLKGKEVILhylgpegeldwmPAFAEIGHllngsgniqivmvgpevptnlsgttsgisSRVRVNLLRGVYqeeatylpsphVIIALNCvldrngswsgALDVIktmgfpafftdqseisCANAKQVLRSaglhithpvtpnpfrspvrnhspssnlpsysngfvfgamefptyelspwnyiltapaifsypiipenyvhwtqtpeshifsadlpgvrkeeikvevedsKYLIIRTeavdestipgrsfmrkfrlpgminideisagyedgvltvmaprsitrrgllidpaavPERLEVLARAA
MDLHLKNLFGRFQDQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNendgkrmtgsretiripnvellrvtfeteslmfpsnkKMIRSLSleasgtdrfpviDVTRCttsgelwfrnpTLEELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVSHPPGqvyderasstshstptkyaeptkeetfADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSstcqkqqwkdthkSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVPTNlsgttsgissRVRVNLLRGVYQEEATYLPSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITHPVTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIkvevedskyliirteavdestipgrsfmrkfRLPGMINIDEISAGYEDGVLTVMAPRSitrrgllidpaavpeRLEVLARAA
MDLHLKNLFGRFQDQFgsgpglgpgsgTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTGSRETIRIPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVSHPPGQVYDERASSTSHSTPTKYAEPTKEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKgglwdlwgglddEEYPQDAPYHNHIRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVPTNLSGTTSGISSRVRVNLLRGVYQEEATYLPSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITHPVTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRRGLLIDPAAVPERLEVLARAA
*******LFGRFQDQF*****LGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNE**********ETIRIPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTV*****************************************GLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVPTNLSGTTSGISSRVRVNLLRGVYQEEATYLPSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITH**********************YSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRRGLLIDPAAV***********
***HLKNLFGRFQDQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNEN************RIPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEELRFVYAFMRAISLVHPLLQV*****PKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVSH****************************TFADVRMNSNGGLRQCATCEKEVH****VCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFG*LPVKGGLWDLWGGLDDEEYP******************LSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGP********************LLRGVYQEEATYLPSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITHPVTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLI****************MRKFRLPGMINIDEISAGYEDGVLTVMAP**************************
MDLHLKNLFGRFQDQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTGSRETIRIPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVSHPPGQVY*******************KEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSS***********KSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVPTNLSGTTSGISSRVRVNLLRGVYQEEATYLPSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITHPVTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRRGLLIDPAAVPERLEVLARAA
*DLHLKNLFGRFQDQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTGSRETIRIPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVSHPPGQ****************YAEPTKEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVP*********ISSRVRVNLLRGVYQEEATYLPSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITHPVTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRRGLLIDPAAVPERLEVLARAA
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MDLHLKNLFGRFQDQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRLHPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTGSRETIRIPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVSHPPGQVYDERASSTSHSTPTKYAEPTKEETFADVRMNSNGGLRQCATCEKEVHGDQSVCCGRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEALGVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGELDWMPAFAEIGHLLNGSGNIQIVMVGPEVPTNLSGTTSGISSRVRVNLLRGVYQEEATYLPSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITHPVTPNPFRSPVRNHSPSSNLPSYSNGFVFGAMEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRRGLLIDPAAVPERLEVLARAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query766 2.2.26 [Sep-21-2011]
O49710134 15.4 kDa class V heat sho no no 0.171 0.977 0.582 3e-35
Q8C0R7736 Zinc finger MYND domain-c yes no 0.468 0.487 0.275 1e-25
Q9H091742 Zinc finger MYND domain-c yes no 0.472 0.487 0.260 3e-24
Q7EZ57173 18.8 kDa class V heat sho no no 0.113 0.502 0.526 3e-18
Q943Q3150 16.6 kDa heat shock prote no no 0.121 0.62 0.396 4e-16
P27880158 18.2 kDa class I heat sho N/A no 0.112 0.544 0.437 3e-14
P27879143 18.1 kDa class I heat sho N/A no 0.112 0.601 0.416 6e-14
P13853157 17.6 kDa class I heat sho no no 0.105 0.515 0.472 9e-14
P05478161 18.5 kDa class I heat sho no no 0.112 0.534 0.406 1e-13
P04793153 17.5 kDa class I heat sho no no 0.112 0.562 0.395 2e-13
>sp|O49710|HS154_ARATH 15.4 kDa class V heat shock protein OS=Arabidopsis thaliana GN=HSP15.4 PE=2 SV=1 Back     alignment and function desciption
 Score =  150 bits (380), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 104/139 (74%), Gaps = 8/139 (5%)

Query: 631 MEFPTYELSPWNYILTAPAIFSYPIIPENYVHWTQTPESHIFSADLPGVRKEEIKVEVED 690
           M+F T ++ PW Y+L + ++ +Y    EN+V W+Q+P+SH FS DLPG+RKEEIKVE+ED
Sbjct: 1   MDFQTIQVMPWEYVLASQSLNNYQ---ENHVRWSQSPDSHTFSVDLPGLRKEEIKVEIED 57

Query: 691 SKYLIIRTEAVDES--TIPGRSFMRKFRLPGMINIDEISAGYEDGVLTVMAPRSI-TRRG 747
           S YLIIRTEA   S    P ++F RKFRLP  I++  ISAGYEDGVLTV+ P+ I TRR 
Sbjct: 58  SIYLIIRTEATPMSPPDQPLKTFKRKFRLPESIDMIGISAGYEDGVLTVIVPKRIMTRR- 116

Query: 748 LLIDPAAVPERLEVLARAA 766
            LIDP+ VPE L++LARAA
Sbjct: 117 -LIDPSDVPESLQLLARAA 134

Arabidopsis thaliana (taxid: 3702)
>sp|Q8C0R7|ZMY15_MOUSE Zinc finger MYND domain-containing protein 15 OS=Mus musculus GN=Zmynd15 PE=1 SV=1 Back     alignment and function description
>sp|Q9H091|ZMY15_HUMAN Zinc finger MYND domain-containing protein 15 OS=Homo sapiens GN=ZMYND15 PE=2 SV=2 Back     alignment and function description
>sp|Q7EZ57|HS188_ORYSJ 18.8 kDa class V heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.8 PE=2 SV=1 Back     alignment and function description
>sp|Q943Q3|HS166_ORYSJ 16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1 Back     alignment and function description
>sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1 Back     alignment and function description
>sp|P27879|HSP11_MEDSA 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1 Back     alignment and function description
>sp|P13853|HS17C_ARATH 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2 Back     alignment and function description
>sp|P05478|HSP16_SOYBN 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1 Back     alignment and function description
>sp|P04793|HSP13_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query766
255554925632 hypothetical protein RCOM_0905090 [Ricin 0.822 0.996 0.828 0.0
225444440633 PREDICTED: uncharacterized protein LOC10 0.822 0.995 0.827 0.0
356548973631 PREDICTED: uncharacterized protein LOC10 0.818 0.993 0.800 0.0
356557903463 PREDICTED: uncharacterized protein LOC10 0.590 0.976 0.792 0.0
302764944626 hypothetical protein SELMODRAFT_439335 [ 0.800 0.979 0.491 1e-168
296087001395 unnamed protein product [Vitis vinifera] 0.488 0.946 0.780 1e-166
297799868264 hypothetical protein ARALYDRAFT_492682 [ 0.326 0.946 0.706 3e-95
15234632266 uncharacterized protein [Arabidopsis tha 0.326 0.939 0.690 2e-92
356555654129 PREDICTED: zinc finger MYND domain-conta 0.164 0.976 0.817 8e-53
359497244136 PREDICTED: 15.4 kDa class V heat shock p 0.177 1.0 0.683 9e-49
>gi|255554925|ref|XP_002518500.1| hypothetical protein RCOM_0905090 [Ricinus communis] gi|223542345|gb|EEF43887.1| hypothetical protein RCOM_0905090 [Ricinus communis] Back     alignment and taxonomy information
 Score = 1086 bits (2808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/630 (82%), Positives = 572/630 (90%)

Query: 1   MDLHLKNLFGRFQDQFGSGPGLGPGSGTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRL 60
           MDLHLK+LFGRFQ+QFGSGPGLGPGSGTCLMKVEGIAPN IKS+Y+A AALYRT+PW+RL
Sbjct: 1   MDLHLKSLFGRFQEQFGSGPGLGPGSGTCLMKVEGIAPNFIKSLYKACAALYRTDPWRRL 60

Query: 61  HPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTGSRETIRIP 120
            P HLFGIRVGKDSDWS KKQ FPC QF+GGDGGD+G YMFR+ ND K+MTGSRETI +P
Sbjct: 61  RPPHLFGIRVGKDSDWSGKKQLFPCIQFIGGDGGDVGFYMFRSVNDAKKMTGSRETILVP 120

Query: 121 NVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLEEL 180
           NVELLRVT+E+ESLMFPSN+KMI+SLSLE SGTDRFPVIDV R  +SG L FR+PTLEEL
Sbjct: 121 NVELLRVTYESESLMFPSNRKMIKSLSLEVSGTDRFPVIDVARFMSSGALQFRHPTLEEL 180

Query: 181 RFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVTVS 240
           RFVYAFMRAISLVH LLQ D +GGPKWS+L++FEPFIETVDVQWP EMAKG DLVAVT+S
Sbjct: 181 RFVYAFMRAISLVHTLLQEDKEGGPKWSKLIYFEPFIETVDVQWPSEMAKGYDLVAVTIS 240

Query: 241 HPPGQVYDERASSTSHSTPTKYAEPTKEETFADVRMNSNGGLRQCATCEKEVHGDQSVCC 300
           HPPGQ Y+E+ASST+ STPTKYAE  +EE F D+R++SN GLRQC  C+KEVHG+QS  C
Sbjct: 241 HPPGQAYEEKASSTASSTPTKYAERPREEIFVDMRISSNSGLRQCTMCDKEVHGEQSPSC 300

Query: 301 GRCRAVIYCSSTCQKQQWKDTHKSECGLYKAMMEREEELAMKIFMFPCSADQPCKWLEAL 360
           G CRAVIYCSS CQKQ WK+THKS CGLYKAMMEREEELAM IFMFPCSA+QPCKWLE+L
Sbjct: 301 GHCRAVIYCSSQCQKQHWKETHKSMCGLYKAMMEREEELAMNIFMFPCSAEQPCKWLESL 360

Query: 361 GVHQKGMWRRKCSCYSHCPFGLLPVKGGLWDLWGGLDDEEYPQDAPYHNHIRDGISSPIL 420
           G+HQKGMWRRKCSCYSHCPFGLLPVKGGLWD WGGLDDE+YP D+P+HNH+RDGISSPIL
Sbjct: 361 GIHQKGMWRRKCSCYSHCPFGLLPVKGGLWDSWGGLDDEDYPCDSPFHNHLRDGISSPIL 420

Query: 421 LSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTALSISSKNRLLKGKEVILHYLGPEGE 480
           LSGWSEYYNLRSLPLSSPVADILSHPLTVYYILT L+ISSKN LLKGKEVILHYLGPEGE
Sbjct: 421 LSGWSEYYNLRSLPLSSPVADILSHPLTVYYILTTLNISSKNLLLKGKEVILHYLGPEGE 480

Query: 481 LDWMPAFAEIGHLLNGSGNIQIVMVGPEVPTNLSGTTSGISSRVRVNLLRGVYQEEATYL 540
           LDWMPAFAEI HLLNGSGNI IVMVGPEVPTNLSGTTSG+SSRVRVNL+RG+YQEEATYL
Sbjct: 481 LDWMPAFAEISHLLNGSGNIHIVMVGPEVPTNLSGTTSGVSSRVRVNLVRGIYQEEATYL 540

Query: 541 PSPHVIIALNCVLDRNGSWSGALDVIKTMGFPAFFTDQSEISCANAKQVLRSAGLHITHP 600
           PSPHVI+ALNC LD + SW GAL+VIK+   PAF T+QSEISCANAKQVLR AGLHITHP
Sbjct: 541 PSPHVIVALNCGLDNHTSWGGALEVIKSANVPAFITEQSEISCANAKQVLRGAGLHITHP 600

Query: 601 VTPNPFRSPVRNHSPSSNLPSYSNGFVFGA 630
           VTPNPFRSP++  S SSNLPSYSNGFV G 
Sbjct: 601 VTPNPFRSPLKIQSTSSNLPSYSNGFVLGV 630

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444440|ref|XP_002266891.1| PREDICTED: uncharacterized protein LOC100252085 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356548973|ref|XP_003542873.1| PREDICTED: uncharacterized protein LOC100802088 [Glycine max] Back     alignment and taxonomy information
>gi|356557903|ref|XP_003547249.1| PREDICTED: uncharacterized protein LOC100792243 [Glycine max] Back     alignment and taxonomy information
>gi|302764944|ref|XP_002965893.1| hypothetical protein SELMODRAFT_439335 [Selaginella moellendorffii] gi|300166707|gb|EFJ33313.1| hypothetical protein SELMODRAFT_439335 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|296087001|emb|CBI33265.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297799868|ref|XP_002867818.1| hypothetical protein ARALYDRAFT_492682 [Arabidopsis lyrata subsp. lyrata] gi|297313654|gb|EFH44077.1| hypothetical protein ARALYDRAFT_492682 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15234632|ref|NP_193920.1| uncharacterized protein [Arabidopsis thaliana] gi|2894567|emb|CAA17156.1| hypothetical protein [Arabidopsis thaliana] gi|7269034|emb|CAB79144.1| hypothetical protein [Arabidopsis thaliana] gi|60543313|gb|AAX22254.1| At4g21890 [Arabidopsis thaliana] gi|106879183|gb|ABF82621.1| At4g21890 [Arabidopsis thaliana] gi|332659119|gb|AEE84519.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356555654|ref|XP_003546145.1| PREDICTED: zinc finger MYND domain-containing protein 15-like [Glycine max] Back     alignment and taxonomy information
>gi|359497244|ref|XP_003635462.1| PREDICTED: 15.4 kDa class V heat shock protein-like [Vitis vinifera] gi|296090669|emb|CBI41069.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query766
TAIR|locus:2141647266 AT4G21890 "AT4G21890" [Arabido 0.326 0.939 0.646 4.3e-86
TAIR|locus:2141632134 AT4G21870 [Arabidopsis thalian 0.171 0.977 0.582 2.1e-34
UNIPROTKB|F1RFT6734 ZMYND15 "Uncharacterized prote 0.315 0.329 0.278 8.4e-21
MGI|MGI:3603821736 Zmynd15 "zinc finger, MYND-typ 0.314 0.327 0.274 2.7e-20
UNIPROTKB|Q7EZ57173 HSP18.8 "18.8 kDa class V heat 0.113 0.502 0.548 4.4e-20
UNIPROTKB|Q9H091742 ZMYND15 "Zinc finger MYND doma 0.314 0.324 0.266 7.6e-20
UNIPROTKB|F1MZ43737 ZMYND15 "Uncharacterized prote 0.315 0.328 0.278 2.1e-19
UNIPROTKB|I3L296750 ZMYND15 "Zinc finger MYND doma 0.314 0.321 0.266 4.6e-18
UNIPROTKB|P27777150 HSP16.9A "16.9 kDa class I hea 0.112 0.573 0.447 1.9e-15
UNIPROTKB|Q943E6150 HSP16.9B "16.9 kDa class I hea 0.112 0.573 0.447 1.9e-15
TAIR|locus:2141647 AT4G21890 "AT4G21890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 163/252 (64%), Positives = 195/252 (77%)

Query:     1 MDLHLKNLFGRFQDQFXXXXXXXXXXXTCLMKVEGIAPNCIKSIYRAAAALYRTEPWKRL 60
             MDLHLKNLFGRFQ+QF            CLM VEGI+ N I+SI+RA+A+LY +EPWKRL
Sbjct:     1 MDLHLKNLFGRFQEQFGSGPGLGPGSGVCLMIVEGISSNIIQSIFRASASLYSSEPWKRL 60

Query:    61 HPGHLFGIRVGKDSDWSNKKQPFPCAQFVGGDGGDIGIYMFRNENDGKRMTG--SRETIR 118
              PGHLFG+RVGKDSDWS K+QPF C QF+GGDGGDI IYM+R+ +   +MT   S E  R
Sbjct:    61 RPGHLFGVRVGKDSDWSGKRQPFQCVQFIGGDGGDIAIYMYRSMSYALKMTDGDSWEMAR 120

Query:   119 IPNVELLRVTFETESLMFPSNKKMIRSLSLEASGTDRFPVIDVTRCTTSGELWFRNPTLE 178
              PNVE+ RVT+E ESLM PSNK+M++SLSLE SGTDRFP++DV RC TSGEL FR+PTLE
Sbjct:   121 DPNVEVFRVTYELESLMLPSNKRMVKSLSLEVSGTDRFPIMDVARCMTSGELQFRSPTLE 180

Query:   179 ELRFVYAFMRAISLVHPLLQVDTDGGPKWSRLLHFEPFIETVDVQWPPEMAKGNDLVAVT 238
             ELR V+A M+A+SLVHPLL  +        R++ F PFIETVDVQWP EM KG+D VAVT
Sbjct:   181 ELRLVFAVMKALSLVHPLLLQEEKQVRGLPRMIKFSPFIETVDVQWPSEMGKGHDFVAVT 240

Query:   239 VSHPPGQVYDER 250
             VSHPPGQ Y+++
Sbjct:   241 VSHPPGQSYEQK 252
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
TAIR|locus:2141632 AT4G21870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFT6 ZMYND15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:3603821 Zmynd15 "zinc finger, MYND-type containing 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q7EZ57 HSP18.8 "18.8 kDa class V heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H091 ZMYND15 "Zinc finger MYND domain-containing protein 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZ43 ZMYND15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3L296 ZMYND15 "Zinc finger MYND domain-containing protein 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P27777 HSP16.9A "16.9 kDa class I heat shock protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E6 HSP16.9B "16.9 kDa class I heat shock protein 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011497001
SubName- Full=Chromosome chr10 scaffold_312, whole genome shotgun sequence; (633 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query766
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 4e-22
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 1e-19
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 4e-19
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 4e-19
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 4e-14
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 1e-12
pfam0175339 pfam01753, zf-MYND, MYND finger 4e-10
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 1e-05
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 4e-04
cd0647586 cd06475, ACD_HspB1_like, Alpha crystallin domain ( 5e-04
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information 
 Score = 90.8 bits (226), Expect = 4e-22
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 10/91 (10%)

Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR----------S 710
           V W +TPE+H+F AD+PGV+KE++KVEVED + L I  E   E    G            
Sbjct: 2   VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGR 61

Query: 711 FMRKFRLPGMINIDEISAGYEDGVLTVMAPR 741
           F+R+FRLP   + DE+ A  E+GVLTV  P+
Sbjct: 62  FVRRFRLPENADADEVKAFLENGVLTVTVPK 92

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative stress. Also belonging to this group is wheat HSP16.9 which differs in quaternary structure from the shell-type particles of ScHsp26, it assembles as a dodecameric double disc, with each disc organized as a trimer of dimers. Length = 92
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 766
PRK11597142 heat shock chaperone IbpB; Provisional 99.83
PRK10743137 heat shock protein IbpA; Provisional 99.8
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.8
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.78
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.76
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.74
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.73
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.73
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.72
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.72
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.71
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.71
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.69
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.66
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.65
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.64
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.64
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.6
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.51
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.39
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.37
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.16
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 98.92
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.72
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.62
cd0646384 p23_like Proteins containing this p23_like domain 98.55
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.27
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 98.1
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 97.82
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 97.33
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 97.22
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 97.19
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 97.14
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 96.94
cd0648887 p23_melusin_like p23_like domain similar to the C- 96.89
cd0646892 p23_CacyBP p23_like domain found in proteins simil 96.67
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 96.47
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 95.68
KOG3612588 consensus PHD Zn-finger protein [General function 94.98
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 94.64
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 94.3
KOG1309196 consensus Suppressor of G2 allele of skp1 [Signal 92.64
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 92.6
PLN03158396 methionine aminopeptidase; Provisional 92.09
KOG2084482 consensus Predicted histone tail methylase contain 89.45
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 86.26
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 81.83
KOG2061362 consensus Uncharacterized MYND Zn-finger protein [ 80.51
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information 
Probab=99.83  E-value=2e-20  Score=179.92  Aligned_cols=96  Identities=16%  Similarity=0.249  Sum_probs=83.7

Q ss_pred             CccceEEE-cCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeecc--------CccccceEEEEEECCCCccccceEE
Q 004229          658 ENYVHWTQ-TPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE--------STIPGRSFMRKFRLPGMINIDEISA  728 (766)
Q Consensus       658 ~~~vdv~e-~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~--------~e~~~~~F~R~~~LP~~vd~~~I~A  728 (766)
                      .|++||.| ++++|+|+++|||+++|||+|+|++| +|+|+|+++.+        .|+.+|+|+|+|.||++||.+  +|
T Consensus        32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A  108 (142)
T PRK11597         32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA  108 (142)
T ss_pred             CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence            46899998 57799999999999999999999999 59999997542        245789999999999999998  69


Q ss_pred             EEeCCEEEEEEecc--CCCCCeeccCCCCC
Q 004229          729 GYEDGVLTVMAPRS--ITRRGLLIDPAAVP  756 (766)
Q Consensus       729 ~~~nGvL~I~lPK~--~~~~~r~I~I~~~~  756 (766)
                      +|+||||+|+|||.  +..++++|+|+..|
T Consensus       109 ~~~nGVL~I~lPK~~~~~~~~rkI~I~~~~  138 (142)
T PRK11597        109 TFVNGLLHIDLIRNEPEAIAPQRIAISERP  138 (142)
T ss_pred             EEcCCEEEEEEeccCccccCCcEEEECCcc
Confidence            99999999999997  44578999997644

>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>KOG3612 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query766
2byu_A101 Negative Stain Em Reconstruction Of M.Tuberculosis 3e-09
2h50_A93 Multiple Distinct Assemblies Reveal Conformational 4e-09
1gme_A151 Crystal Structure And Assembly Of An Eukaryotic Sma 5e-09
3vqk_A123 Small Heat Shock Protein Hsp14.0 Of Wild Type Lengt 3e-04
3aab_A123 Small Heat Shock Protein Hsp14.0 With The Mutations 3e-04
3vql_A115 Small Heat Shock Protein Hsp14.0 Of C-Terminal Dele 3e-04
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101 Back     alignment and structure 
Iteration: 1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 10/90 (11%)
Query: 663 WTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPG-------RS---FM 712
           W +TPE+H+F ADLPGV+KEE+KVEVED   L++  E   E            RS   F+
Sbjct: 6   WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 65
Query: 713 RKFRLPGMINIDEISAGYEDGVLTVMAPRS 742
           R+FRL     ++E+ AG E+GVLTV  P++
Sbjct: 66  RRFRLLEDAKVEEVKAGLENGVLTVTVPKA 95
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93 Back     alignment and structure
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151 Back     alignment and structure
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type Length = 123 Back     alignment and structure
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of I120f And I122f In The Form I Crystal Length = 123 Back     alignment and structure
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion Variant Length = 115 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query766
1gme_A151 Heat shock protein 16.9B; small heat shock protein 3e-23
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 1e-21
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 3e-21
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 2e-18
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 8e-16
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 2e-15
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 2e-13
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 2e-13
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 6e-13
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 1e-11
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 1e-11
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 1e-11
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 2e-11
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 7e-11
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 2e-09
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 8e-09
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3qww_A433 SET and MYND domain-containing protein 2; methyltr 5e-05
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
 Score = 95.5 bits (238), Expect = 3e-23
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 10/92 (10%)

Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDESTIPGR----------S 710
           + W +TPE+H+F ADLPGV+KEE+KVEVED   L++  E   E                 
Sbjct: 46  MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGK 105

Query: 711 FMRKFRLPGMINIDEISAGYEDGVLTVMAPRS 742
           F+R+FRL     ++E+ AG E+GVLTV  P++
Sbjct: 106 FVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA 137
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query766
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.82
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.81
4fei_A102 Heat shock protein-related protein; stress respons 99.81
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.8
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.8
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.78
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.77
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.76
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.74
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.71
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.67
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.56
3qww_A433 SET and MYND domain-containing protein 2; methyltr 99.4
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 99.35
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 99.35
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 99.15
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 98.7
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 98.7
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 98.69
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 98.64
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.62
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.61
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 96.98
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 96.96
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 96.93
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 96.85
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 96.52
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 96.35
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 96.3
2o30_A131 Nuclear movement protein; MCSG, structural genomic 96.24
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 96.06
3igf_A374 ALL4481 protein; two-domained protein consisting o 96.05
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 95.91
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 95.53
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 94.77
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 89.87
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 87.39
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
Probab=99.82  E-value=4.6e-20  Score=180.45  Aligned_cols=93  Identities=27%  Similarity=0.353  Sum_probs=86.0

Q ss_pred             cceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeecc----------Ccc-ccceEEEEEECCCCccccceEE
Q 004229          660 YVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE----------STI-PGRSFMRKFRLPGMINIDEISA  728 (766)
Q Consensus       660 ~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~----------~e~-~~~~F~R~~~LP~~vd~~~I~A  728 (766)
                      ++||+|++++|+|.++|||+++|||+|+++++ +|+|+|+++.+          .|+ .+|+|.|+|.||.+||.++|+|
T Consensus        58 pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~~-~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A  136 (161)
T 4eld_A           58 PISIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASA  136 (161)
T ss_dssp             CEEEEECSSEEEEEEECTTCCGGGEEEEEETT-EEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEE
T ss_pred             ceeEEEeCCEEEEEEECCCCChHhEEEEEECC-EEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEE
Confidence            49999999999999999999999999999999 59999998752          245 7899999999999999999999


Q ss_pred             EEeCCEEEEEEeccCCCCCeeccCC
Q 004229          729 GYEDGVLTVMAPRSITRRGLLIDPA  753 (766)
Q Consensus       729 ~~~nGvL~I~lPK~~~~~~r~I~I~  753 (766)
                      +|+||||+|++||.+.+++|+|+|+
T Consensus       137 ~~~nGvL~I~lpK~~~~~~r~I~Ie  161 (161)
T 4eld_A          137 KFENGVLSVILPKAESSIKKGINIE  161 (161)
T ss_dssp             EEETTEEEEEEEBCGGGSCCCCCCC
T ss_pred             EEECCEEEEEEEcCCCCCCcEeecC
Confidence            9999999999999988888888884
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 766
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 1e-14
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 8e-14
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 5e-10
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 1e-09
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 3e-09
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 69.8 bits (170), Expect = 1e-14
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 10/96 (10%)

Query: 661 VHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDE----------STIPGRS 710
           + W +TPE+H+F ADLPGV+KEE+KVEVED   L++  E   E                 
Sbjct: 45  MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGK 104

Query: 711 FMRKFRLPGMINIDEISAGYEDGVLTVMAPRSITRR 746
           F+R+FRL     ++E+ AG E+GVLTV  P++  ++
Sbjct: 105 FVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKK 140
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query766
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.8
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.8
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 98.92
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 98.87
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 98.86
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 97.67
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 96.26
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 95.74
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 95.12
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 93.32
d1x4sa146 Zinc finger HIT domain containing protein 2, ZNHIT 86.17
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.80  E-value=1e-19  Score=165.84  Aligned_cols=93  Identities=25%  Similarity=0.314  Sum_probs=84.9

Q ss_pred             cceEEEcCCeEEEEEEcCCCCCCCeEEEEECCeeEEEEEEeeccC-----------ccccceEEEEEECCCCccccceEE
Q 004229          660 YVHWTQTPESHIFSADLPGVRKEEIKVEVEDSKYLIIRTEAVDES-----------TIPGRSFMRKFRLPGMINIDEISA  728 (766)
Q Consensus       660 ~vdv~e~~~~~~i~~dLPG~~kedI~V~v~~~~vL~I~g~~~~~~-----------e~~~~~F~R~~~LP~~vd~~~I~A  728 (766)
                      |+||.|++++|.|.++|||++++||+|+++++ .|+|+|++....           ++.++.|.|+|.||.++|.++|+|
T Consensus        12 pvdi~e~~~~~~i~~~lPG~~~edi~v~v~~~-~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A   90 (115)
T d1shsa_          12 PISIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASA   90 (115)
T ss_dssp             CEEEEECSSEEEEEEECTTCCGGGEEEEEETT-EEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEE
T ss_pred             ceEEEEcCCEEEEEEECCCCCHHHEEEEEECC-EEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEE
Confidence            69999999999999999999999999999999 599999976431           235789999999999999999999


Q ss_pred             EEeCCEEEEEEeccCCCCCeeccCC
Q 004229          729 GYEDGVLTVMAPRSITRRGLLIDPA  753 (766)
Q Consensus       729 ~~~nGvL~I~lPK~~~~~~r~I~I~  753 (766)
                      .|+||+|+|++||.+...+++|+|+
T Consensus        91 ~~~nGvL~I~lpK~~~~~~~~I~Ie  115 (115)
T d1shsa_          91 KFENGVLSVILPKAESSIKKGINIE  115 (115)
T ss_dssp             EEETTEEEEEEEBCGGGCCEECCCC
T ss_pred             EEECCEEEEEEEeCCCCCCceeeeC
Confidence            9999999999999988888999885
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure