Citrus Sinensis ID: 004877
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 725 | 2.2.26 [Sep-21-2011] | |||||||
| Q5QJC4 | 972 | DNA cross-link repair 1A | yes | no | 0.493 | 0.368 | 0.402 | 4e-73 | |
| Q9JIC3 | 1026 | DNA cross-link repair 1A | yes | no | 0.453 | 0.320 | 0.414 | 1e-69 | |
| Q6PJP8 | 1040 | DNA cross-link repair 1A | yes | no | 0.441 | 0.307 | 0.418 | 1e-68 | |
| Q38961 | 484 | DNA cross-link repair pro | no | no | 0.445 | 0.667 | 0.439 | 2e-68 | |
| Q86KS1 | 920 | DNA cross-link repair 1 p | yes | no | 0.457 | 0.360 | 0.370 | 7e-59 | |
| Q10264 | 560 | DNA cross-link repair pro | yes | no | 0.449 | 0.582 | 0.339 | 9e-48 | |
| P30620 | 661 | DNA cross-link repair pro | yes | no | 0.427 | 0.468 | 0.312 | 1e-42 | |
| Q5QJC3 | 457 | 5' exonuclease Apollo OS= | no | no | 0.388 | 0.617 | 0.317 | 2e-33 | |
| B0V2S2 | 571 | 5' exonuclease Apollo OS= | no | no | 0.393 | 0.499 | 0.299 | 2e-31 | |
| D2H8V8 | 529 | 5' exonuclease Apollo OS= | no | no | 0.394 | 0.540 | 0.299 | 1e-30 |
| >sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1 | Back alignment and function desciption |
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Score = 276 bits (706), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 222/370 (60%), Gaps = 12/370 (3%)
Query: 348 GSITNVKKVSTPTNGQSGSRKSFSGSDRKKHAAKDQS----KGRKHKDIPTWCCVPGTPF 403
GS+ +++ V +N G SG RK +S +G + K P + +PGT F
Sbjct: 582 GSVEDLEAVEESSNKDGGDANVTSGGQRKWRKRFRESSTTDEGARKKQCPFYKKIPGTGF 641
Query: 404 RVDAFKY--LRGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRL 461
VDAF+Y + G C+ +FLTHFH DHY GLT++F +YC+ IT LV K+ + +
Sbjct: 642 TVDAFQYGEIEG-CTAYFLTHFHSDHYCGLTKNFVF-PLYCNKITGNLVKSKLRVKEQYI 699
Query: 462 QVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQT 521
VLP++ + + GI V L+ANHCPG+ +ILF +G A+LHTGDFR M L
Sbjct: 700 NVLPMDTECIVNGIKVLLLDANHCPGATMILFYLPSGTAILHTGDFRADPSMERYPALIG 759
Query: 522 CPIHTLILDTTYCNPLYDFPKQEAVIQFVIE-AIQAESFNPKTLFLIGSYTIGKERLFLE 580
IHTL LDTTYC+P Y FP Q+ VIQF + A + + NP+TL + G+Y+IGKE++FL
Sbjct: 760 QKIHTLYLDTTYCSPEYTFPSQQEVIQFAVNTAFEMVTLNPRTLVVCGTYSIGKEKVFLA 819
Query: 581 VARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPMWTLASFKRLKHMSN 640
+A VL K ++ K++ L+CL+ + + T N + +H++PM + +FK L+ N
Sbjct: 820 IAEVLGSKASMSRDKYKTLQCLESAAVN-SLITMNWDGTLLHILPMMQI-NFKGLQDHLN 877
Query: 641 QYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQ-QGTIIRYEVPYSEHCSFTELKEFVKFV 699
+++ F ++AF PTGWT+S + Q +G I Y +PYSEH S+ E+K FV+++
Sbjct: 878 KFSENFDQVLAFKPTGWTYSDSCLSVMDIKPQTRGNITIYGIPYSEHSSYLEMKRFVQWL 937
Query: 700 SPEHIIPSVN 709
P+ IIP+VN
Sbjct: 938 KPQKIIPTVN 947
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May be required for DNA interstrand cross-link repair. Gallus gallus (taxid: 9031) |
| >sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3 | Back alignment and function description |
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| >sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q86KS1|DCR1_DICDI DNA cross-link repair 1 protein OS=Dictyostelium discoideum GN=dclre1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q10264|PSO2_SCHPO DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3 | Back alignment and function description |
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| >sp|P30620|PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSO2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5QJC3|DCR1B_CHICK 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1 | Back alignment and function description |
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| >sp|B0V2S2|DCR1B_DANRE 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1 | Back alignment and function description |
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| >sp|D2H8V8|DCR1B_AILME 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 725 | ||||||
| 255550227 | 737 | DNA cross-link repair protein pso2/snm1, | 0.982 | 0.966 | 0.640 | 0.0 | |
| 224092047 | 740 | predicted protein [Populus trichocarpa] | 0.986 | 0.966 | 0.654 | 0.0 | |
| 359475989 | 842 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.828 | 0.608 | 0.0 | |
| 296081740 | 723 | unnamed protein product [Vitis vinifera] | 0.944 | 0.947 | 0.614 | 0.0 | |
| 357465917 | 671 | DNA cross-link repair 1A protein [Medica | 0.892 | 0.964 | 0.594 | 0.0 | |
| 356518191 | 678 | PREDICTED: DNA cross-link repair protein | 0.921 | 0.985 | 0.576 | 0.0 | |
| 449486809 | 774 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.948 | 0.888 | 0.546 | 0.0 | |
| 297828291 | 721 | sterile alpha motif domain-containing pr | 0.948 | 0.954 | 0.570 | 0.0 | |
| 449447365 | 774 | PREDICTED: uncharacterized protein LOC10 | 0.948 | 0.888 | 0.546 | 0.0 | |
| 15225548 | 723 | sterile alpha motif (SAM) domain-contain | 0.951 | 0.954 | 0.576 | 0.0 |
| >gi|255550227|ref|XP_002516164.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis] gi|223544650|gb|EEF46166.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/740 (64%), Positives = 553/740 (74%), Gaps = 28/740 (3%)
Query: 2 PTKRTVSQPISTAYDDDDFQVPLSQTPKFTTTISKKQKIPLKPSNNPSRPSKKPKPVTNL 61
P ++S PIS DDDDFQ P+SQ T+ S K SNN +RP K+ K N
Sbjct: 10 PLSLSLSIPISDHDDDDDFQTPISQQRPSTSKKSLKS------SNNCNRPPKRSKQSANP 63
Query: 62 GKEN-------NIEGFYLNSDETCSLEAIPSSIDCTRPTACVDIDHSPEC--EEIKEILK 112
GKEN E SDE CSL+ I SSIDC+ + D D+ + EE E+ K
Sbjct: 64 GKENVEPTCSLQNEKTTSPSDEVCSLDLIESSIDCSYRSVHGDGDNDVDFVKEEGLEVKK 123
Query: 113 VNEGYLRNSVESRLLRPRAADCRLSEESEEEEEDAVLDVLLKLC--DKNDVNCNKIDES- 169
+GYL NS+ES+L+R +D + +E + EED+ LD+L+KLC + N V D
Sbjct: 124 --KGYLCNSIESKLIRSGVSD-SVGDEFGDFEEDSDLDLLIKLCTDEMNQVPSGVADGDC 180
Query: 170 -VRCPLCGIDISDLNEELRQAHTNNCLDKCENQAQDVVFPKHERGPRLEPEIDLGLGRSP 228
V+CPLCGIDIS+L+EE R HTN+CLDK +N Q+V ++ G P++ +G S
Sbjct: 181 LVQCPLCGIDISNLSEESRLVHTNDCLDKQDNHLQEVTCGSNDEGTHFAPQV---VGDSG 237
Query: 229 QKAVDVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHT 288
K VDVSPV+++L +LGL RY +AF+REEIDWD+L+WLTEEDL IGVTALGPRKKI+H
Sbjct: 238 HKVVDVSPVLQWLRNLGLERYGDAFIREEIDWDSLKWLTEEDLFSIGVTALGPRKKIVHA 297
Query: 289 LCEIKKEYSRAVESNKDAHVSND-GSSSYHGSERHKEASKVIVDGSSKPAANKLITDFFL 347
L E++K + E+++D + S D GS S H +E EASKV D +SK ANKLITD+F
Sbjct: 298 LAELRKGCNLVDETHRDPNASADVGSLSTHAAEMQMEASKVSGDETSKQTANKLITDYFP 357
Query: 348 GSI--TNVKKVSTPTNGQSGSRKSFSGSDRKKHAAKDQSKGRKHKDIPTWCCVPGTPFRV 405
GS+ T +K + + G K+ S K+ A K K KDIP WC +PGTPFRV
Sbjct: 358 GSVSVTVREKGCSIAKEKRGPAKNRPDSVHKRMAKNHPVKNGKLKDIPLWCSIPGTPFRV 417
Query: 406 DAFKYLRGDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLP 465
DAFKYLRGDCSHWFLTHFHMDHYQGLTRSF HGKIYCSLITARLVNMKIGIPWDRLQVLP
Sbjct: 418 DAFKYLRGDCSHWFLTHFHMDHYQGLTRSFCHGKIYCSLITARLVNMKIGIPWDRLQVLP 477
Query: 466 LNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIH 525
LN+K +IAG+DVTCL+ANHCPGSII+LFEP NGKAVLHTGDFRF E MASM+ LQ C IH
Sbjct: 478 LNKKISIAGVDVTCLDANHCPGSIIVLFEPPNGKAVLHTGDFRFCENMASMTALQMCRIH 537
Query: 526 TLILDTTYCNPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVL 585
TLILDTTYCNP YDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVL
Sbjct: 538 TLILDTTYCNPQYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVL 597
Query: 586 RKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEHESHIHVMPMWTLASFKRLKHMSNQYAGR 645
R+K+YV AAKFR+L+ L FSKE +QWFT NEHES IHV+PMWTLASFKRLKH+SNQYA R
Sbjct: 598 RRKVYVTAAKFRLLESLGFSKEAMQWFTLNEHESQIHVVPMWTLASFKRLKHISNQYASR 657
Query: 646 FSLIVAFSPTGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHII 705
FS IV+FSPTGWTF KGKKKSPGRRWQQGTIIRYEVPYSEHCSFTEL+EFVKFVSPE II
Sbjct: 658 FSPIVSFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHCSFTELREFVKFVSPEKII 717
Query: 706 PSVNNDGRDSANAMVSLLLN 725
PSVNNDG +S + MVSLLL+
Sbjct: 718 PSVNNDGPESVDTMVSLLLS 737
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224092047|ref|XP_002309453.1| predicted protein [Populus trichocarpa] gi|222855429|gb|EEE92976.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359475989|ref|XP_002280362.2| PREDICTED: uncharacterized protein LOC100256089 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296081740|emb|CBI20745.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357465917|ref|XP_003603243.1| DNA cross-link repair 1A protein [Medicago truncatula] gi|355492291|gb|AES73494.1| DNA cross-link repair 1A protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356518191|ref|XP_003527765.1| PREDICTED: DNA cross-link repair protein SNM1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449486809|ref|XP_004157409.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101218609 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297828291|ref|XP_002882028.1| sterile alpha motif domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327867|gb|EFH58287.1| sterile alpha motif domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449447365|ref|XP_004141439.1| PREDICTED: uncharacterized protein LOC101218609 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|15225548|ref|NP_182094.1| sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] gi|3386625|gb|AAC28555.1| hypothetical protein [Arabidopsis thaliana] gi|20197051|gb|AAM14896.1| hypothetical protein [Arabidopsis thaliana] gi|28973723|gb|AAO64178.1| unknown protein [Arabidopsis thaliana] gi|29824257|gb|AAP04089.1| unknown protein [Arabidopsis thaliana] gi|110736829|dbj|BAF00373.1| hypothetical protein [Arabidopsis thaliana] gi|330255495|gb|AEC10589.1| sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 725 | ||||||
| TAIR|locus:2043689 | 723 | AT2G45700 [Arabidopsis thalian | 0.957 | 0.959 | 0.561 | 2.2e-201 | |
| UNIPROTKB|Q5QJC4 | 972 | DCLRE1A "DNA cross-link repair | 0.598 | 0.446 | 0.368 | 8.6e-73 | |
| UNIPROTKB|F1NC75 | 972 | DCLRE1A "DNA cross-link repair | 0.598 | 0.446 | 0.368 | 1.1e-72 | |
| ZFIN|ZDB-GENE-050522-124 | 904 | dclre1a "DNA cross-link repair | 0.489 | 0.392 | 0.404 | 9.7e-72 | |
| RGD|1306156 | 1026 | Dclre1a "DNA cross-link repair | 0.583 | 0.412 | 0.358 | 1.1e-71 | |
| TAIR|locus:2090832 | 484 | SNM1 "SENSITIVE TO NITROGEN MU | 0.508 | 0.762 | 0.412 | 9.9e-71 | |
| UNIPROTKB|I3LLR2 | 1034 | DCLRE1A "Uncharacterized prote | 0.451 | 0.316 | 0.415 | 1.3e-70 | |
| UNIPROTKB|F1S5H8 | 1045 | DCLRE1A "Uncharacterized prote | 0.451 | 0.312 | 0.415 | 1.7e-70 | |
| MGI|MGI:1930042 | 1026 | Dclre1a "DNA cross-link repair | 0.582 | 0.411 | 0.359 | 1.8e-70 | |
| UNIPROTKB|I3LAK7 | 956 | DCLRE1A "Uncharacterized prote | 0.504 | 0.382 | 0.400 | 2.3e-70 |
| TAIR|locus:2043689 AT2G45700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
Identities = 410/730 (56%), Positives = 504/730 (69%)
Query: 16 DDDDFQVPLSQTPKFTTTISKKQKIXXXXXXXXXXXXXXXXXVTNLGKEN-------NIE 68
DDDDFQ+P P +I K GKEN + +
Sbjct: 8 DDDDFQIP----PSSQLSIRKPLHPTNANNISHRPPNKKPRLCRYPGKENVTPPPSPDPD 63
Query: 69 GFYLNSDETCSLEAIPSSIDCTRPTACVDIDH-SPECEEIKE-ILKVN-EGYLRNSVESR 125
F +S C L+ IPSS+DC+ I E +E K+ +KVN EGYL NS+E+R
Sbjct: 64 LFCSSSTPHCILDCIPSSVDCSLGDFNGPISSLGEEDKEDKDDCIKVNREGYLCNSMEAR 123
Query: 126 LLRPRAA---DCRLXXXXXXXX-XDAVLDVLLKLCDKNDVNCNKI----DESVRCPLCGI 177
LL+ R D + ++ LDVL+ LC +++ + D+S++CPLC +
Sbjct: 124 LLKSRICLGFDSGIHEDDEGFVESNSELDVLINLCSESEGRSGEFSLGKDDSIQCPLCSM 183
Query: 178 DISDLNEELRQAHTNNCLDKCENQA--QDVVFPKHERGPRLEPEIDLGLGRSPQKAVDVS 235
DIS L+EE RQ H+N CLDK NQ QD + ++ ID + + PQ D+S
Sbjct: 184 DISSLSEEQRQVHSNTCLDKSYNQPSEQDSLRKCENLSSLIKESIDDPV-QLPQLVTDLS 242
Query: 236 PVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEIKKE 295
PV+++L SLGLA+YE+ F+REEIDWDTLQ LTEEDL+ IG+T+LGPRKKI++ L ++
Sbjct: 243 PVLKWLRSLGLAKYEDVFIREEIDWDTLQSLTEEDLLSIGITSLGPRKKIVNALSGVRDP 302
Query: 296 YSRAVESNKDAHVSNDGSSSYHGSERHKEASKVI-VDGSSKPAANKLITDFFLGSITNVK 354
++ + E +H + S H +ER ++ S KP ANKLIT+FF G T
Sbjct: 303 FASSAEVQAQSHCT-----SGHVTERQRDKSTTRKASEPKKPTANKLITEFFPGQATEGT 357
Query: 355 KVSTPTNGQSGSRKSFSGSDRKKHAAKDQSKGRKHKDIPTWCCVPGTPFRVDAFKYLRGD 414
K+ T + + KS S S ++ ++ + G K K IP W C+PGTPFRVDAFKYL D
Sbjct: 358 KIRTAP--KPVAEKSPSDSSSRRAVRRNGNNG-KSKVIPHWNCIPGTPFRVDAFKYLTRD 414
Query: 415 CSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQKTTIAG 474
C HWFLTHFH+DHYQGLT+SF HGKIYCSL+TA+LVNMKIGIPW+RLQVL L QK I+G
Sbjct: 415 CCHWFLTHFHLDHYQGLTKSFSHGKIYCSLVTAKLVNMKIGIPWERLQVLDLGQKVNISG 474
Query: 475 IDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYC 534
IDVTC +ANHCPGSI+ILFEP NGKAVLHTGDFR+SEEM++ + I +LILDTTYC
Sbjct: 475 IDVTCFDANHCPGSIMILFEPANGKAVLHTGDFRYSEEMSNWLI--GSHISSLILDTTYC 532
Query: 535 NPLYDFPKQEAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAA 594
NP YDFPKQEAVIQFV+EAIQAE+FNPKTLFLIGSYTIGKERLFLEVARVLR+KIY+N A
Sbjct: 533 NPQYDFPKQEAVIQFVVEAIQAEAFNPKTLFLIGSYTIGKERLFLEVARVLREKIYINPA 592
Query: 595 KFRVLKCLDFSKEDIQWFTTNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSP 654
K ++L+CL FSK+DIQWFT E ESHIHV+P+WTLASFKRLKH++N+Y R+SLIVAFSP
Sbjct: 593 KLKLLECLGFSKDDIQWFTVKEEESHIHVVPLWTLASFKRLKHVANRYTNRYSLIVAFSP 652
Query: 655 TGWTFSKGKKKSPGRRWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRD 714
TGWT K KKKSPGRR QQGTIIRYEVPYSEH SFTELKEFV+ VSPE IIPSVNNDG D
Sbjct: 653 TGWTSGKTKKKSPGRRLQQGTIIRYEVPYSEHSSFTELKEFVQKVSPEVIIPSVNNDGPD 712
Query: 715 SANAMVSLLL 724
SA AMVSLL+
Sbjct: 713 SAAAMVSLLV 722
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| UNIPROTKB|Q5QJC4 DCLRE1A "DNA cross-link repair 1A protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NC75 DCLRE1A "DNA cross-link repair 1A protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050522-124 dclre1a "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| RGD|1306156 Dclre1a "DNA cross-link repair 1A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| TAIR|locus:2090832 SNM1 "SENSITIVE TO NITROGEN MUSTARD 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3LLR2 DCLRE1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S5H8 DCLRE1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:1930042 Dclre1a "DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3LAK7 DCLRE1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 725 | |||
| pfam07522 | 107 | pfam07522, DRMBL, DNA repair metallo-beta-lactamas | 1e-28 | |
| cd09487 | 56 | cd09487, SAM_superfamily, SAM (Sterile alpha motif | 2e-17 | |
| pfam00536 | 62 | pfam00536, SAM_1, SAM domain (Sterile alpha motif) | 1e-16 | |
| COG1236 | 427 | COG1236, YSH1, Predicted exonuclease of the beta-l | 3e-15 | |
| smart00454 | 68 | smart00454, SAM, Sterile alpha motif | 1e-12 | |
| cd09520 | 65 | cd09520, SAM_BICC1, SAM domain of BICC1 (bicaudal) | 3e-12 | |
| pfam07647 | 66 | pfam07647, SAM_2, SAM domain (Sterile alpha motif) | 1e-10 | |
| pfam12706 | 197 | pfam12706, Lactamase_B_2, Beta-lactamase superfami | 2e-09 | |
| smart00849 | 177 | smart00849, Lactamase_B, Metallo-beta-lactamase su | 1e-08 | |
| COG0595 | 555 | COG0595, COG0595, mRNA degradation ribonucleases J | 2e-08 | |
| cd09517 | 66 | cd09517, SAM_USH1G_HARP, SAM domain of USH1G_HARP | 2e-08 | |
| cd09533 | 58 | cd09533, SAM_Ste50-like_fungal, SAM domain of Ste5 | 3e-08 | |
| cd09488 | 61 | cd09488, SAM_EPH-R, SAM domain of EPH family of ty | 9e-08 | |
| cd09521 | 64 | cd09521, SAM_ASZ1, SAM domain of ASZ1 subfamily | 1e-07 | |
| cd09587 | 67 | cd09587, SAM_HARP, SAM domain of HARP subfamily | 2e-07 | |
| cd09524 | 66 | cd09524, SAM_tankyrase1,2, SAM domain of tankyrase | 9e-07 | |
| cd09506 | 66 | cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3 | 1e-06 | |
| cd09519 | 64 | cd09519, SAM_ANKS3, SAM domain of ANKS3 subfamily | 2e-06 | |
| cd09516 | 69 | cd09516, SAM_sec23ip-like, SAM domain of sec23ip-l | 3e-06 | |
| cd09586 | 66 | cd09586, SAM_USH1G, SAM domain of USH1G | 7e-06 | |
| TIGR04122 | 326 | TIGR04122, Xnuc_lig_assoc, putative exonuclease, D | 8e-06 | |
| cd09585 | 69 | cd09585, SAM_DDHD2, SAM domain of DDHD2 | 1e-05 | |
| cd09534 | 62 | cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fun | 3e-05 | |
| cd09554 | 67 | cd09554, SAM_EPH-B4, SAM domain of EPH-B4 subfamil | 3e-05 | |
| cd09584 | 69 | cd09584, SAM_sec23ip, SAM domain of sec23ip | 3e-05 | |
| pfam00753 | 148 | pfam00753, Lactamase_B, Metallo-beta-lactamase sup | 3e-05 | |
| cd09505 | 72 | cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins | 3e-05 | |
| cd09555 | 69 | cd09555, SAM_EPH-B6, SAM domain of EPH-B6 subfamil | 5e-05 | |
| cd09556 | 69 | cd09556, SAM_VTS1_fungal, SAM domain of VTS1 RNA-b | 7e-05 | |
| cd09546 | 66 | cd09546, SAM_EPH-A5, SAM domain of EPH-A5 subfamil | 8e-05 | |
| cd09491 | 63 | cd09491, SAM_Ship2, SAM domain of Ship2 lipid phos | 8e-05 | |
| COG0491 | 252 | COG0491, GloB, Zn-dependent hydrolases, including | 2e-04 | |
| COG1235 | 269 | COG1235, PhnP, Metal-dependent hydrolases of the b | 2e-04 | |
| cd09523 | 65 | cd09523, SAM_TAL, SAM domain of TAL subfamily | 3e-04 | |
| cd09553 | 69 | cd09553, SAM_EPH-B3, SAM domain of EPH-B3 subfamil | 4e-04 | |
| cd09508 | 70 | cd09508, SAM_HD, SAM domain of HD-phosphohydrolase | 7e-04 | |
| cd09518 | 65 | cd09518, SAM_ANKS6, SAM domain of ANKS6 (or SamCys | 8e-04 | |
| COG1234 | 292 | COG1234, ElaC, Metal-dependent hydrolases of the b | 0.001 | |
| cd09509 | 64 | cd09509, SAM_Polycomb, SAM domain of Polycomb grou | 0.001 | |
| cd09498 | 71 | cd09498, SAM_caskin1,2_repeat2, SAM domain of cask | 0.001 | |
| cd09489 | 57 | cd09489, SAM_Smaug-like, SAM (Sterile alpha motif | 0.001 | |
| cd09552 | 71 | cd09552, SAM_EPH-B2, SAM domain of EPH-B2 subfamil | 0.002 | |
| cd09497 | 66 | cd09497, SAM_caskin1,2_repeat1, SAM domain of cask | 0.002 | |
| TIGR00649 | 422 | TIGR00649, MG423, conserved hypothetical protein | 0.003 | |
| cd09499 | 67 | cd09499, SAM_AIDA1AB-like_repeat1, SAM domain of A | 0.004 |
| >gnl|CDD|219448 pfam07522, DRMBL, DNA repair metallo-beta-lactamase | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 607 EDIQWFTTNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKS 666
E + TT+ + IHV+PM + ++ L + F ++A PTGWTF K
Sbjct: 2 ELLSVLTTDPSSTRIHVVPMGKI-RYEALLSYLKAFKEHFDSVIAIRPTGWTFRPPKTNV 60
Query: 667 PGR-RWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIPSVNNDG 712
R + +G I Y VPYSEH SF+ELK+FV F+ P+ IIP+VN
Sbjct: 61 LDRIKPSRGKITIYGVPYSEHSSFSELKDFVSFLRPKKIIPTVNVGS 107
|
The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair. Length = 107 |
| >gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif ) | Back alignment and domain information |
|---|
| >gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif) | Back alignment and domain information |
|---|
| >gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|197735 smart00454, SAM, Sterile alpha motif | Back alignment and domain information |
|---|
| >gnl|CDD|188919 cd09520, SAM_BICC1, SAM domain of BICC1 (bicaudal) subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif) | Back alignment and domain information |
|---|
| >gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain | Back alignment and domain information |
|---|
| >gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|188916 cd09517, SAM_USH1G_HARP, SAM domain of USH1G_HARP family | Back alignment and domain information |
|---|
| >gnl|CDD|188932 cd09533, SAM_Ste50-like_fungal, SAM domain of Ste50_like (ubc2) subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188887 cd09488, SAM_EPH-R, SAM domain of EPH family of tyrosine kinase receptors | Back alignment and domain information |
|---|
| >gnl|CDD|188920 cd09521, SAM_ASZ1, SAM domain of ASZ1 subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188986 cd09587, SAM_HARP, SAM domain of HARP subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188923 cd09524, SAM_tankyrase1,2, SAM domain of tankyrase1,2 subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188905 cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3 family proteins | Back alignment and domain information |
|---|
| >gnl|CDD|188918 cd09519, SAM_ANKS3, SAM domain of ANKS3 subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188915 cd09516, SAM_sec23ip-like, SAM domain of sec23ip-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188985 cd09586, SAM_USH1G, SAM domain of USH1G | Back alignment and domain information |
|---|
| >gnl|CDD|200373 TIGR04122, Xnuc_lig_assoc, putative exonuclease, DNA ligase-associated | Back alignment and domain information |
|---|
| >gnl|CDD|188984 cd09585, SAM_DDHD2, SAM domain of DDHD2 | Back alignment and domain information |
|---|
| >gnl|CDD|188933 cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fungal subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188953 cd09554, SAM_EPH-B4, SAM domain of EPH-B4 subfamily of tyrosine kinase receptors | Back alignment and domain information |
|---|
| >gnl|CDD|188983 cd09584, SAM_sec23ip, SAM domain of sec23ip | Back alignment and domain information |
|---|
| >gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188904 cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins | Back alignment and domain information |
|---|
| >gnl|CDD|188954 cd09555, SAM_EPH-B6, SAM domain of EPH-B6 subfamily of tyrosine kinase receptors | Back alignment and domain information |
|---|
| >gnl|CDD|188955 cd09556, SAM_VTS1_fungal, SAM domain of VTS1 RNA-binding proteins | Back alignment and domain information |
|---|
| >gnl|CDD|188945 cd09546, SAM_EPH-A5, SAM domain of EPH-A5 subfamily of tyrosine kinase receptors | Back alignment and domain information |
|---|
| >gnl|CDD|188890 cd09491, SAM_Ship2, SAM domain of Ship2 lipid phosphatase proteins | Back alignment and domain information |
|---|
| >gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|188922 cd09523, SAM_TAL, SAM domain of TAL subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|188952 cd09553, SAM_EPH-B3, SAM domain of EPH-B3 subfamily of tyrosine kinase receptors | Back alignment and domain information |
|---|
| >gnl|CDD|188907 cd09508, SAM_HD, SAM domain of HD-phosphohydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|188917 cd09518, SAM_ANKS6, SAM domain of ANKS6 (or SamCystin) subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|188908 cd09509, SAM_Polycomb, SAM domain of Polycomb group | Back alignment and domain information |
|---|
| >gnl|CDD|188897 cd09498, SAM_caskin1,2_repeat2, SAM domain of caskin protein repeat 2 | Back alignment and domain information |
|---|
| >gnl|CDD|188888 cd09489, SAM_Smaug-like, SAM (Sterile alpha motif ) | Back alignment and domain information |
|---|
| >gnl|CDD|188951 cd09552, SAM_EPH-B2, SAM domain of EPH-B2 subfamily of tyrosine kinase receptors | Back alignment and domain information |
|---|
| >gnl|CDD|188896 cd09497, SAM_caskin1,2_repeat1, SAM domain of caskin protein repeat 1 | Back alignment and domain information |
|---|
| >gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein | Back alignment and domain information |
|---|
| >gnl|CDD|188898 cd09499, SAM_AIDA1AB-like_repeat1, SAM domain of AIDA1AB-like proteins, repeat 1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 725 | |||
| KOG1361 | 481 | consensus Predicted hydrolase involved in interstr | 100.0 | |
| TIGR03675 | 630 | arCOG00543 arCOG00543 universal archaeal KH-domain | 100.0 | |
| COG1782 | 637 | Predicted metal-dependent RNase, consists of a met | 100.0 | |
| COG1236 | 427 | YSH1 Predicted exonuclease of the beta-lactamase f | 100.0 | |
| TIGR00649 | 422 | MG423 conserved hypothetical protein. Contains an | 99.97 | |
| KOG1136 | 501 | consensus Predicted cleavage and polyadenylation s | 99.95 | |
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 99.94 | |
| COG0595 | 555 | mRNA degradation ribonucleases J1/J2 (metallo-beta | 99.94 | |
| TIGR03307 | 238 | PhnP phosphonate metabolism protein PhnP. This fam | 99.66 | |
| PRK11244 | 250 | phnP carbon-phosphorus lyase complex accessory pro | 99.65 | |
| TIGR02651 | 299 | RNase_Z ribonuclease Z. Processing of the 3-prime | 99.62 | |
| TIGR02649 | 303 | true_RNase_BN ribonuclease BN. Members of this pro | 99.61 | |
| PRK02113 | 252 | putative hydrolase; Provisional | 99.56 | |
| PF07522 | 110 | DRMBL: DNA repair metallo-beta-lactamase; InterPro | 99.55 | |
| PRK02126 | 334 | ribonuclease Z; Provisional | 99.54 | |
| PF12706 | 194 | Lactamase_B_2: Beta-lactamase superfamily domain; | 99.52 | |
| PRK05184 | 302 | pyrroloquinoline quinone biosynthesis protein PqqB | 99.5 | |
| TIGR02108 | 302 | PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. | 99.49 | |
| PRK00685 | 228 | metal-dependent hydrolase; Provisional | 99.43 | |
| TIGR02650 | 277 | RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me | 99.42 | |
| PF00536 | 64 | SAM_1: SAM domain (Sterile alpha motif); InterPro: | 99.39 | |
| COG1234 | 292 | ElaC Metal-dependent hydrolases of the beta-lactam | 99.39 | |
| PRK00055 | 270 | ribonuclease Z; Reviewed | 99.33 | |
| PF07647 | 66 | SAM_2: SAM domain (Sterile alpha motif); InterPro: | 99.31 | |
| PRK04286 | 298 | hypothetical protein; Provisional | 99.31 | |
| KOG1135 | 764 | consensus mRNA cleavage and polyadenylation factor | 99.27 | |
| cd00166 | 63 | SAM Sterile alpha motif.; Widespread domain in sig | 99.23 | |
| smart00454 | 68 | SAM Sterile alpha motif. Widespread domain in sign | 99.15 | |
| PRK11709 | 355 | putative L-ascorbate 6-phosphate lactonase; Provis | 99.14 | |
| smart00849 | 183 | Lactamase_B Metallo-beta-lactamase superfamily. Ap | 99.05 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 99.01 | |
| KOG4374 | 216 | consensus RNA-binding protein Bicaudal-C [RNA proc | 98.99 | |
| TIGR03413 | 248 | GSH_gloB hydroxyacylglutathione hydrolase. Members | 98.92 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 98.91 | |
| PLN02398 | 329 | hydroxyacylglutathione hydrolase | 98.87 | |
| PLN02469 | 258 | hydroxyacylglutathione hydrolase | 98.87 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 98.86 | |
| PF02112 | 335 | PDEase_II: cAMP phosphodiesterases class-II; Inter | 98.82 | |
| PRK10241 | 251 | hydroxyacylglutathione hydrolase; Provisional | 98.8 | |
| PF13483 | 163 | Lactamase_B_3: Beta-lactamase superfamily domain; | 98.78 | |
| KOG2121 | 746 | consensus Predicted metal-dependent hydrolase (bet | 98.71 | |
| PLN02962 | 251 | hydroxyacylglutathione hydrolase | 98.65 | |
| COG1235 | 269 | PhnP Metal-dependent hydrolases of the beta-lactam | 98.6 | |
| KOG4384 | 361 | consensus Uncharacterized SAM domain protein [Gene | 98.57 | |
| COG0491 | 252 | GloB Zn-dependent hydrolases, including glyoxylase | 98.55 | |
| COG2220 | 258 | Predicted Zn-dependent hydrolases of the beta-lact | 98.5 | |
| KOG0813 | 265 | consensus Glyoxylase [General function prediction | 98.37 | |
| KOG1170 | 1099 | consensus Diacylglycerol kinase [Lipid transport a | 98.27 | |
| PF00753 | 194 | Lactamase_B: Metallo-beta-lactamase superfamily; I | 98.21 | |
| KOG4375 | 272 | consensus Scaffold protein Shank and related SAM d | 98.21 | |
| KOG1138 | 653 | consensus Predicted cleavage and polyadenylation s | 98.19 | |
| PF07521 | 43 | RMMBL: RNA-metabolising metallo-beta-lactamase; In | 98.11 | |
| COG5212 | 356 | PDE1 Low-affinity cAMP phosphodiesterase [Signal t | 98.05 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 98.05 | |
| COG2333 | 293 | ComEC Predicted hydrolase (metallo-beta-lactamase | 98.02 | |
| TIGR00361 | 662 | ComEC_Rec2 DNA internalization-related competence | 97.99 | |
| PRK11539 | 755 | ComEC family competence protein; Provisional | 97.79 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.54 | |
| COG1237 | 259 | Metal-dependent hydrolases of the beta-lactamase s | 97.4 | |
| COG2248 | 304 | Predicted hydrolase (metallo-beta-lactamase superf | 97.19 | |
| KOG0814 | 237 | consensus Glyoxylase [General function prediction | 97.18 | |
| PF09597 | 57 | IGR: IGR protein motif; InterPro: IPR019083 This e | 96.63 | |
| KOG3798 | 343 | consensus Predicted Zn-dependent hydrolase (beta-l | 96.48 | |
| KOG1899 | 861 | consensus LAR transmembrane tyrosine phosphatase-i | 96.2 | |
| PF14597 | 199 | Lactamase_B_5: Metallo-beta-lactamase superfamily; | 95.36 | |
| KOG1899 | 861 | consensus LAR transmembrane tyrosine phosphatase-i | 94.77 | |
| KOG1738 | 638 | consensus Membrane-associated guanylate kinase-int | 93.53 | |
| KOG3791 | 569 | consensus Predicted RNA-binding protein involved i | 91.62 | |
| KOG4374 | 216 | consensus RNA-binding protein Bicaudal-C [RNA proc | 90.11 | |
| COG2015 | 655 | Alkyl sulfatase and related hydrolases [Secondary | 90.09 | |
| KOG3930 | 389 | consensus Uncharacterized conserved protein [Funct | 88.08 |
| >KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=398.93 Aligned_cols=333 Identities=47% Similarity=0.782 Sum_probs=289.3
Q ss_pred cCCCCcccCCCCceEeCCccccC-CCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCCcceEEecCCC
Q 004877 390 KDIPTWCCVPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPWDRLQVLPLNQ 468 (725)
Q Consensus 390 ~~~p~~~~ipg~~~~ID~f~~~~-~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~~~~~~l~~ge 468 (725)
..+|+++..||..|.||+|++.. .++.+.|+||+|.||+.||...|.++++||+..|+.++...+++++..++.++.++
T Consensus 87 ~p~~~~~~~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~~sW~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~ 166 (481)
T KOG1361|consen 87 IPLHVIKVLPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLTKSWSHPPLYCSPITARLVPLKVSVTKQSIQALDLNQ 166 (481)
T ss_pred CCCcceeecCCCcEEEehhhcCCccccceeeeecccccccccccccccCCcccccccchhhhhhhcccChhhceeecCCC
Confidence 46889999999999999999876 58999999999999999999999998999999999999999999888899999999
Q ss_pred EEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCC-CCccEEEEecCCCCCCCCCCCHHHHH
Q 004877 469 KTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQT-CPIHTLILDTTYCNPLYDFPKQEAVI 547 (725)
Q Consensus 469 ~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~-~~~DlLIlEaTy~~~~~~~p~~~e~~ 547 (725)
++.+.++.|+.++|+||||++||+|+...|..++||||||+...+...|++.. ..+|.+++|+||+++.|.||++++++
T Consensus 167 ~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~esv 246 (481)
T KOG1361|consen 167 PLEIPGIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEESV 246 (481)
T ss_pred ceeecceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCccHHHHH
Confidence 99999999999999999999999999888888999999999999988764444 78999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-CCcEEEEecccccHHHHHHHHHHHcCCcEEEechHHHHHHHcCCCccccccccc-CCCCCcEEEEe
Q 004877 548 QFVIEAIQAESFN-PKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTT-NEHESHIHVMP 625 (725)
Q Consensus 548 ~~l~e~I~~~~~~-~~~~vlIp~~slGreqll~eLa~~l~~~I~V~~~~~~I~~~lg~~~~~~~~it~-~~~e~~v~vvp 625 (725)
+.+++++...... .+.++++++|++|+|++++++|+.++.+|+|.+..+.+.+++|+.++. +++. +..+..+|+++
T Consensus 247 q~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l~~kI~v~~~~~~~~~~lg~~d~~--~~~s~d~~~ssvhv~~ 324 (481)
T KOG1361|consen 247 QEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARILNSKIWVEPRRLRLLQCLGFDDES--KLLSIDVDESSVHVVP 324 (481)
T ss_pred HHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHhCCceEEehhhchhhhhcCCCChh--hhhccccccCceeEee
Confidence 9999988764444 578899999999999999999999999999999999999999965433 4554 77789999999
Q ss_pred CCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcch-hhhcC-ceEEEEeccCCCCCHHHHHHHHHHcCCCE
Q 004877 626 MWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGR-RWQQG-TIIRYEVPYSEHCSFTELKEFVKFVSPEH 703 (725)
Q Consensus 626 ~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr-~~~~G-~~~v~~vpyS~HAs~~EL~~fV~~lrPk~ 703 (725)
++.+.....+..+...+..+++.++++++|||+.+......... +.+.| .+.++.+|||+|++|.||.+|++.++|+.
T Consensus 325 ~~~l~~~~~l~~~~~~~~~~~s~~v~~~~tgwt~~~~~s~~~~~~~~~~~~~i~~~~vpYseHSs~~el~~f~~~lk~k~ 404 (481)
T KOG1361|consen 325 MNSLASSPSLKEYESQYEDGYSKLVGFSPTGWTKGKLVSLDKENSRPQSGSKIPISLVPYSEHSSYTELSEFLSKLKPKT 404 (481)
T ss_pred hhhhccccchhhhhcccccCcceeEeecccccccccccccCccccccccccccccccccccccCCHHHHHHHHHhcCCCe
Confidence 99887667777777788899999999999999976432222211 23445 34467899999999999999999999999
Q ss_pred EEEEeeCCC----hHHH-HHHHHHhh
Q 004877 704 IIPSVNNDG----RDSA-NAMVSLLL 724 (725)
Q Consensus 704 VIPtv~hg~----~~~~-~~m~~~l~ 724 (725)
|||+|+.+. .... +.|...+.
T Consensus 405 iiptv~~~~~~~~~~~~~~~k~s~~~ 430 (481)
T KOG1361|consen 405 IIPTVNEDTELSDATEVPEEKSSLLL 430 (481)
T ss_pred eecCccCCccccchhhhhhhhhhhhc
Confidence 999999999 6666 56665543
|
|
| >TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
| >COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00649 MG423 conserved hypothetical protein | Back alignment and domain information |
|---|
| >KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR03307 PhnP phosphonate metabolism protein PhnP | Back alignment and domain information |
|---|
| >PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02651 RNase_Z ribonuclease Z | Back alignment and domain information |
|---|
| >TIGR02649 true_RNase_BN ribonuclease BN | Back alignment and domain information |
|---|
| >PRK02113 putative hydrolase; Provisional | Back alignment and domain information |
|---|
| >PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
| >PRK02126 ribonuclease Z; Provisional | Back alignment and domain information |
|---|
| >PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A | Back alignment and domain information |
|---|
| >PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional | Back alignment and domain information |
|---|
| >TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B | Back alignment and domain information |
|---|
| >PRK00685 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type | Back alignment and domain information |
|---|
| >PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes | Back alignment and domain information |
|---|
| >COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
|---|
| >PRK00055 ribonuclease Z; Reviewed | Back alignment and domain information |
|---|
| >PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes | Back alignment and domain information |
|---|
| >PRK04286 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd00166 SAM Sterile alpha motif | Back alignment and domain information |
|---|
| >smart00454 SAM Sterile alpha motif | Back alignment and domain information |
|---|
| >PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional | Back alignment and domain information |
|---|
| >smart00849 Lactamase_B Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02398 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PLN02469 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
| >PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 | Back alignment and domain information |
|---|
| >PRK10241 hydroxyacylglutathione hydrolase; Provisional | Back alignment and domain information |
|---|
| >PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A | Back alignment and domain information |
|---|
| >KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02962 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0813 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] | Back alignment and domain information |
|---|
| >KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
| >COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 | Back alignment and domain information |
|---|
| >PRK11539 ComEC family competence protein; Provisional | Back alignment and domain information |
|---|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
| >COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
|---|
| >COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0814 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif | Back alignment and domain information |
|---|
| >KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] | Back alignment and domain information |
|---|
| >PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B | Back alignment and domain information |
|---|
| >KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3791 consensus Predicted RNA-binding protein involved in translational regulation [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
| >KOG3930 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 725 | ||||
| 4b87_A | 367 | Crystal Structure Of Human Dna Cross-Link Repair 1a | 7e-68 | ||
| 3zdk_A | 336 | Crystal Structure Of Human 5' Exonuclease Apollo Le | 4e-28 |
| >pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a Length = 367 | Back alignment and structure |
|
| >pdb|3ZDK|A Chain A, Crystal Structure Of Human 5' Exonuclease Apollo Length = 336 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 5e-20
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 233 DVSPVVEFLHSLGLARYEEAFVREEIDWDTLQWLTEEDLIGIGVTALGPRKKILHTLCEI 292
+ SP+ FL SL + + +E+ID + L ++ DL I V LGPR+KIL +
Sbjct: 1 ETSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISV-PLGPREKILGAVRRR 59
Query: 293 KKEYSR 298
++ R
Sbjct: 60 RQAMER 65
|
| >2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens} Length = 83 | Back alignment and structure |
|---|
| >1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2 Length = 94 | Back alignment and structure |
|---|
| >2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
| >1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 81 | Back alignment and structure |
|---|
| >2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
| >2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus} Length = 74 | Back alignment and structure |
|---|
| >1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A Length = 82 | Back alignment and structure |
|---|
| >2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
| >2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A Length = 76 | Back alignment and structure |
|---|
| >3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
| >2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B Length = 86 | Back alignment and structure |
|---|
| >2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens} Length = 82 | Back alignment and structure |
|---|
| >2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae} Length = 119 | Back alignment and structure |
|---|
| >2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83 | Back alignment and structure |
|---|
| >3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A Length = 82 | Back alignment and structure |
|---|
| >2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A Length = 88 | Back alignment and structure |
|---|
| >2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A Length = 101 | Back alignment and structure |
|---|
| >3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A Length = 149 | Back alignment and structure |
|---|
| >3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A Length = 149 | Back alignment and structure |
|---|
| >2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
| >1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91 | Back alignment and structure |
|---|
| >2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
| >3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A Length = 89 | Back alignment and structure |
|---|
| >1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A Length = 85 | Back alignment and structure |
|---|
| >2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
| >2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
| >1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13 Length = 173 | Back alignment and structure |
|---|
| >1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91 | Back alignment and structure |
|---|
| >1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2 Length = 78 | Back alignment and structure |
|---|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 | Back alignment and structure |
|---|
| >3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster} Length = 78 | Back alignment and structure |
|---|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 | Back alignment and structure |
|---|
| >3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus} Length = 265 | Back alignment and structure |
|---|
| >3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus} Length = 265 | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 | Back alignment and structure |
|---|
| >3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster} Length = 106 | Back alignment and structure |
|---|
| >2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
| >2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 | Back alignment and structure |
|---|
| >1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A Length = 89 | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 | Back alignment and structure |
|---|
| >1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 91 | Back alignment and structure |
|---|
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 | Back alignment and structure |
|---|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 | Back alignment and structure |
|---|
| >4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Length = 270 | Back alignment and structure |
|---|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429 | Back alignment and structure |
|---|
| >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Length = 276 | Back alignment and structure |
|---|
| >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Length = 223 | Back alignment and structure |
|---|
| >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Length = 219 | Back alignment and structure |
|---|
| >3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Length = 274 | Back alignment and structure |
|---|
| >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Length = 254 | Back alignment and structure |
|---|
| >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Length = 379 | Back alignment and structure |
|---|
| >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Length = 232 | Back alignment and structure |
|---|
| >3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Length = 555 | Back alignment and structure |
|---|
| >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Length = 227 | Back alignment and structure |
|---|
| >3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A Length = 334 | Back alignment and structure |
|---|
| >2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Length = 265 | Back alignment and structure |
|---|
| >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Length = 228 | Back alignment and structure |
|---|
| >1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 | Back alignment and structure |
|---|
| >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 725 | |||
| 4b87_A | 367 | DNA cross-LINK repair 1A protein; dclre1A, DCLRE, | 100.0 | |
| 3zdk_A | 336 | 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A | 100.0 | |
| 3iek_A | 431 | Ribonuclease TTHA0252; metallo beta lactamase fold | 100.0 | |
| 2i7t_A | 459 | Cleavage and polyadenylation specificity factor 73 | 100.0 | |
| 3af5_A | 651 | Putative uncharacterized protein PH1404; archaeal | 100.0 | |
| 2xr1_A | 640 | Cleavage and polyadenylation specificity factor 1 | 100.0 | |
| 2ycb_A | 636 | Beta-CAsp RNAse, cleavage and polyadenylation spec | 100.0 | |
| 3zq4_A | 555 | Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat | 99.97 | |
| 3bk2_A | 562 | RNAse J, metal dependent hydrolase; endoribonuclea | 99.97 | |
| 2az4_A | 429 | Hypothetical protein EF2904; structural genomics, | 99.95 | |
| 2i7x_A | 717 | Protein CFT2; polyadenylation, metallo-B-lactamase | 99.9 | |
| 1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, | 99.74 | |
| 2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, | 99.66 | |
| 1y44_A | 320 | Ribonuclease Z; zinc-dependent metal hydrolase, hy | 99.65 | |
| 2cbn_A | 306 | Ribonuclease Z; phosphodiesterase beta lactamase t | 99.64 | |
| 3g1p_A | 258 | Protein PHNP; C-P lyase, phosphodiesterase, phosph | 99.64 | |
| 3md7_A | 293 | Beta-lactamase-like; ssgcid, hydrolase, structural | 99.6 | |
| 3k1r_B | 74 | Usher syndrome type-1G protein; protein-protein co | 99.6 | |
| 1ucv_A | 81 | Ephrin type-A receptor 8; receptor oligomerization | 99.55 | |
| 3h8m_A | 90 | Ephrin type-A receptor 7; SAM domain, kinase,struc | 99.54 | |
| 2eao_A | 99 | Ephrin type-B receptor 1; cell-free protein synthe | 99.54 | |
| 3zwf_A | 368 | Zinc phosphodiesterase ELAC protein 1; beta-lactam | 99.54 | |
| 2kso_A | 82 | Ephrin type-A receptor 2; SAM domain, heterodimer, | 99.53 | |
| 1b4f_A | 82 | EPHB2; SAM domain, EPH receptor, signal transducti | 99.52 | |
| 2e8n_A | 88 | Ephrin type-A receptor 2; cell-free protein synthe | 99.52 | |
| 1b0x_A | 94 | Protein (EPHA4 receptor tyrosine kinase); protein | 99.52 | |
| 3jxp_A | 321 | Coenzyme PQQ synthesis protein B; alpha-beta prote | 99.51 | |
| 2qkq_A | 83 | Ephrin type-B receptor 4; ATP-binding, glycoprotei | 99.5 | |
| 2gle_A | 74 | Neurabin-1; SAM domain, scaffold, protein protein | 99.49 | |
| 3kka_C | 86 | Ephrin type-A receptor 2; ATP-binding, kinase, nuc | 99.49 | |
| 2f3n_A | 76 | SH3 and multiple ankyrin repeat domains 3; postsyn | 99.46 | |
| 3bq7_A | 81 | Diacylglycerol kinase delta; SAM domain, polymeriz | 99.45 | |
| 3rpc_A | 264 | Possible metal-dependent hydrolase; structural gen | 99.45 | |
| 2kg5_A | 100 | ARF-GAP, RHO-GAP domain, ANK repeat and PH domain- | 99.45 | |
| 2k4p_A | 86 | Phosphatidylinositol-3,4,5-trisphosphate 5- phosph | 99.44 | |
| 1x40_A | 91 | ARAP2; ASAP-related protein2, GTPase activity, sig | 99.43 | |
| 3hil_A | 82 | Ephrin type-A receptor 1; ATP-binding, kinase, nuc | 99.43 | |
| 3kl7_A | 235 | Putative metal-dependent hydrolase; structural gen | 99.43 | |
| 3bs5_B | 80 | Connector enhancer of kinase suppressor of RAS 2; | 99.42 | |
| 2ean_A | 83 | Connector enhancer of kinase suppressor of RAS 2; | 99.41 | |
| 2dl0_A | 97 | SAM and SH3 domain-containing protein 1; cell-free | 99.4 | |
| 2e8o_A | 103 | SAM domain and HD domain-containing protein 1; cel | 99.4 | |
| 1v38_A | 78 | SAM-domain protein samsn-1; structural genomics, h | 99.38 | |
| 2eam_A | 80 | Putative 47 kDa protein; cell-free protein synthes | 99.36 | |
| 3bs7_A | 78 | Protein aveugle; sterIle alpha motif (SAM) domain, | 99.36 | |
| 2y9u_A | 69 | Tumor protein 63; apoptosis, sterIle alpha motif, | 99.35 | |
| 1v85_A | 91 | Similar to ring finger protein 36; apoptosis, neur | 99.34 | |
| 1kw4_A | 89 | Polyhomeotic; SAM domain, polycomb group, polymer, | 99.33 | |
| 2d8c_A | 97 | Phosphatidylcholine:ceramide cholinephosphotransfe | 99.32 | |
| 3bs5_A | 106 | Protein aveugle; sterIle alpha motif, SAM domain, | 99.32 | |
| 2y9t_A | 82 | Tumor protein 63; apoptosis, sterIle alpha motif, | 99.3 | |
| 1wwv_A | 91 | Connector enhancer of kinase suppressor of RAS 1; | 99.28 | |
| 2ke7_A | 103 | Ankyrin repeat and sterIle alpha motif domain- con | 99.28 | |
| 2lmr_A | 101 | ODIN, ankyrin repeat and SAM domain-containing pro | 99.27 | |
| 2d3d_A | 88 | VTS1 protein; RNA binding, SAM domain, SRE hairpin | 99.25 | |
| 1ow5_A | 85 | Serine/threonine-protein kinase STE11; MAP kinase, | 99.24 | |
| 2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; | 99.23 | |
| 3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-l | 99.22 | |
| 2r2d_A | 276 | AGR_PTI_140P, Zn-dependent hydrolases; lactonase, | 99.18 | |
| 3sei_A | 149 | Caskin-1; SAM domain, protein-protein interaction, | 99.18 | |
| 2es6_A | 101 | VTS1P; SAM domain, protein structure, gene regulat | 99.15 | |
| 3sei_A | 149 | Caskin-1; SAM domain, protein-protein interaction, | 99.15 | |
| 3m8t_A | 294 | 'BLR6230 protein; subclass B3 beta-lactamase, zinc | 99.14 | |
| 1vjn_A | 220 | Zn-dependent hydrolase of metallo-beta-lactamase s | 99.13 | |
| 2b6g_A | 119 | VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin | 99.12 | |
| 3dha_A | 254 | N-acyl homoserine lactone hydrolase; zinc bimetall | 99.12 | |
| 1k07_A | 263 | FEZ-1 beta-lactamase; monomer with alpha-beta/BETA | 99.12 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 99.11 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 99.1 | |
| 3hnn_A | 262 | Putative diflavin flavoprotein A 5; PSI-2, protein | 99.1 | |
| 3adr_A | 261 | Putative uncharacterized protein ST1585; quorum se | 99.09 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 99.09 | |
| 3l6n_A | 219 | Metallo-beta-lactamase; zinc, hydolase, antibiotic | 99.07 | |
| 2xf4_A | 210 | Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A | 99.02 | |
| 2kiv_A | 148 | Ankyrin repeat and sterIle alpha motif domain- con | 99.02 | |
| 4ax1_B | 303 | Metallo-beta-lactamase AIM-1; hydrolase, antibioti | 99.02 | |
| 3esh_A | 280 | Protein similar to metal-dependent hydrolase; stru | 99.01 | |
| 2kiv_A | 148 | Ankyrin repeat and sterIle alpha motif domain- con | 99.0 | |
| 4efz_A | 298 | Metallo-beta-lactamase family protein; structural | 98.99 | |
| 1pk1_B | 89 | Sex COMB on midleg CG9495-PA; hetero SAM domain, p | 98.99 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 98.97 | |
| 1sml_A | 269 | Protein (penicillinase); metallo-beta-lactamase, a | 98.94 | |
| 1m2x_A | 223 | Class B carbapenemase BLAB-1; alpha-beta/BETA-alph | 98.93 | |
| 1mqo_A | 227 | Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd | 98.93 | |
| 1xm8_A | 254 | Glyoxalase II; structural genomics, protein struct | 98.93 | |
| 2gcu_A | 245 | Putative hydroxyacylglutathione hydrolase 3; ethyl | 98.92 | |
| 1a7t_A | 232 | Metallo-beta-lactamase; hydrolase (beta-lactamase) | 98.92 | |
| 2vw8_A | 303 | PA1000, PQSE; quinolone signal response protein, s | 98.92 | |
| 3aj3_A | 274 | MLR6805 protein, 4-pyridoxolactonase; Zn-protein, | 98.91 | |
| 2zo4_A | 317 | Metallo-beta-lactamase family protein; hydrolase; | 98.91 | |
| 4hl2_A | 243 | Beta-lactamase NDM-1; structural genomics, PSI-bio | 98.88 | |
| 2p18_A | 311 | Glyoxalase II; metalloprotein, beta sandwich, alph | 98.88 | |
| 1qh5_A | 260 | Glyoxalase II, protein (hydroxyacylglutathione hyd | 98.87 | |
| 1ztc_A | 221 | Hypothetical protein TM0894; structural genomics, | 98.87 | |
| 2zwr_A | 207 | Metallo-beta-lactamase superfamily protein; hydrol | 98.87 | |
| 3tp9_A | 474 | Beta-lactamase and rhodanese domain protein; struc | 98.87 | |
| 1oxj_A | 173 | RNA-binding protein smaug; SAM domain, PHAT domain | 98.86 | |
| 3r2u_A | 466 | Metallo-beta-lactamase family protein; structural | 98.84 | |
| 4ad9_A | 289 | Lactb2, beta-lactamase-like protein 2; hydrolase, | 98.83 | |
| 2qed_A | 258 | Hydroxyacylglutathione hydrolase; metallo-B- super | 98.83 | |
| 1p9e_A | 331 | Methyl parathion hydrolase; Zn containing; 2.40A { | 98.82 | |
| 2fhx_A | 246 | SPM-1; metallo-beta-lactamase, dinuclear zinc, ant | 98.79 | |
| 2y8b_A | 265 | Metallo-B-lactamase; hydrolase, cephalosporins, an | 98.78 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 98.75 | |
| 3q6v_A | 233 | Beta-lactamase; metalloenzyme, alpha-beta, hydrola | 98.75 | |
| 3iog_A | 227 | Beta-lactamase; hydrolase, antibiotic resistance, | 98.73 | |
| 1jjt_A | 228 | IMP-1 metallo beta-lactamase; metallo-beta-lactama | 98.72 | |
| 3tad_C | 265 | Liprin-beta-1; protein binding; 2.90A {Mus musculu | 98.72 | |
| 3tad_C | 265 | Liprin-beta-1; protein binding; 2.90A {Mus musculu | 98.66 | |
| 2bib_A | 547 | CBPE, teichoic acid phosphorylcholine esterase/ ch | 98.59 | |
| 2cfu_A | 658 | SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 | 98.47 | |
| 4eyb_A | 270 | Beta-lactamase NDM-1; metallo beta lactamase, anti | 98.42 | |
| 3tac_B | 334 | Liprin-alpha-2; transferase-protein binding comple | 98.34 | |
| 2dkz_A | 84 | Hypothetical protein LOC64762; cell-free protein s | 98.29 | |
| 1uqv_A | 85 | STE50 protein; SAM, sterIle alpha motif, helical, | 98.21 | |
| 1dxs_A | 80 | P53-like transcription factor; P73 SAM-like domain | 98.11 | |
| 2p97_A | 201 | Hypothetical protein; putative metal-dependent hyd | 98.1 | |
| 2yhe_A | 668 | SEC-alkyl sulfatase; hydrolase, inversion, metallo | 97.22 | |
| 3tac_B | 334 | Liprin-alpha-2; transferase-protein binding comple | 97.97 | |
| 2p4z_A | 284 | Metal-dependent hydrolases of the beta-lactamase s | 97.92 | |
| 2l5y_A | 150 | Stromal interaction molecule 2; EF-hand, SAM domai | 97.84 | |
| 2k60_A | 150 | Protein (stromal interaction molecule 1); EF-hand, | 97.69 | |
| 2eap_A | 90 | Lymphocyte cytosolic protein 2; cell-free protein | 97.07 | |
| 3h3e_A | 267 | Uncharacterized protein TM1679; structural genomic | 95.52 | |
| 3idw_A | 72 | Actin cytoskeleton-regulatory complex protein SLA; | 94.99 |
| >4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=442.60 Aligned_cols=341 Identities=40% Similarity=0.741 Sum_probs=278.4
Q ss_pred cccCCCCCcccCCCCcccCCCCceEeCCccccC-CCccEEEeccCchhhhCChhhhcCCceEEeCHHHHHHHHHHhCCCC
Q 004877 380 AKDQSKGRKHKDIPTWCCVPGTPFRVDAFKYLR-GDCSHWFLTHFHMDHYQGLTRSFHHGKIYCSLITARLVNMKIGIPW 458 (725)
Q Consensus 380 ~~~~~~~gk~~~~p~~~~ipg~~~~ID~f~~~~-~~idaIfLTHaH~DHigGLp~~~~~~pIY~s~~T~~ll~~~lg~~~ 458 (725)
...+...+..+.||+|+.+||.++.||.|++.. .+|++|||||+|.||++||+..+ .++||+++.|..++...++...
T Consensus 16 ~~~~~~~~~~~~~p~~~~~pG~~ilVD~f~~~~~~~IdaI~lTH~H~DHiggl~~~~-~~pIy~s~~t~~ll~~~l~~~~ 94 (367)
T 4b87_A 16 ESSNVGGSRKKTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHF-TFPVYCSEITGNLLKNKLHVQE 94 (367)
T ss_dssp -------CCCCCCCGGGBCTTSSEEESCCSSSSCTTCCEEECCCCCHHHHTTCSTTC-CSCEEECHHHHHHHHHHSCCCG
T ss_pred ccccCCCCCCCCCceEEEECCCeEEEeCCCcCCccCCcEEEECcChHHHhCCccccc-CCcEEECHHHHHHHHHHhcccc
Confidence 344555666678999999999999999998854 58999999999999999999644 5799999999999998887655
Q ss_pred cceEEecCCCEEEECCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCC
Q 004877 459 DRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLY 538 (725)
Q Consensus 459 ~~~~~l~~ge~~~Iggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~ 538 (725)
..++.++.++++.+++++|+++++||++|+++|+|+..+|++|+||||+++.+.... +.+...++|+||+||||+++.+
T Consensus 95 ~~~~~l~~g~~~~ig~~~v~~~~agH~~gs~~~~i~~~~g~~il~tGD~~~~~~~~~-~~l~~~~~D~Li~EsTy~~~~~ 173 (367)
T 4b87_A 95 QYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMER-SLLADQKVHMLYLDTTYCSPEY 173 (367)
T ss_dssp GGEEECCBTSCEEETTEEEEEEECSSSTTCEEEEEECTTSCEEEECCSCCCCGGGGG-SGGGTSCCCEEEECCTTCSTTC
T ss_pred ceEEEeCCCCEEEECCEEEEEEeCCCcCCcEEEEEEcCCCcEEEEecCcccCcccch-hhhccCCCCEEEEecccCCCCC
Confidence 567889999999999999999999999999999998657778999999999887755 3344568999999999999989
Q ss_pred CCCCHHHHHHHHHHHHHHh-hcCCCcEEEEecccccHHHHHHHHHHHcCCcEEEechHHHHHHHcCCCcccccccccCCC
Q 004877 539 DFPKQEAVIQFVIEAIQAE-SFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLDFSKEDIQWFTTNEH 617 (725)
Q Consensus 539 ~~p~~~e~~~~l~e~I~~~-~~~~~~~vlIp~~slGreqll~eLa~~l~~~I~V~~~~~~I~~~lg~~~~~~~~it~~~~ 617 (725)
.+|+++++++.+.+.+.+. ..+++..|++++|++||+|+++++++.++++|++++.++++++++++.. ...++|.++.
T Consensus 174 ~~ps~~~~~~~~~~~i~~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~g~ki~v~~~~~~il~~l~~~~-~~~~~t~d~~ 252 (367)
T 4b87_A 174 TFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPE-INSLITTDMC 252 (367)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSCCHHHHHHHHHHTTCCEECCHHHHHHHHTTCCTT-HHHHEESCGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhCCEEEEeHHHHHHHHhcCCch-hhhhcccCCc
Confidence 9999988877665544321 1245667789999999999999999999999999999999999998653 3456888888
Q ss_pred CCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcch-hhhcCceEEEEeccCCCCCHHHHHHHH
Q 004877 618 ESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGR-RWQQGTIIRYEVPYSEHCSFTELKEFV 696 (725)
Q Consensus 618 e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr-~~~~G~~~v~~vpyS~HAs~~EL~~fV 696 (725)
+++||++|++.++ ++.+..+..++.++++.+|+|.||||.+.......... .-.+|.+.++.+|||+||||.||.+||
T Consensus 253 ~~~vh~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~ptgw~~~~~~~~~~~~~~~~~~~~~~~~vpySeHss~~EL~~fv 331 (367)
T 4b87_A 253 SSLVHLLPMMQIN-FKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFV 331 (367)
T ss_dssp GCSEEEEEGGGCS-HHHHHHHHHSGGGCCCEEEEEEECC----------CCCCCEEETTEEEEEECCCSSCCHHHHHHHH
T ss_pred cceEEEeecCcCC-HHHHHHHHHHhhcccccEEEEcCcccccCCCCCcccccccccCCceEEEEEeccCCCCHHHHHHHH
Confidence 9999999998874 67787777778889999999999999875432211100 012466678999999999999999999
Q ss_pred HHcCCCEEEEEeeCCChHHHHHHHHHhh
Q 004877 697 KFVSPEHIIPSVNNDGRDSANAMVSLLL 724 (725)
Q Consensus 697 ~~lrPk~VIPtv~hg~~~~~~~m~~~l~ 724 (725)
+.++|++|||||+.|+++++++|..++.
T Consensus 332 ~~l~p~~iiptv~~~~~~~~~~m~~~~~ 359 (367)
T 4b87_A 332 QWLKPQKIIPTVNVGTWKSRSTMEKYFR 359 (367)
T ss_dssp HHHCCSEEEECSSCSSHHHHHHHHHHHH
T ss_pred HhcCCCeEECeecCCCHHHHHHHHHHHH
Confidence 9999999999999999999999988764
|
| >3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* | Back alignment and structure |
|---|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
| >3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* | Back alignment and structure |
|---|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 | Back alignment and structure |
|---|
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 | Back alignment and structure |
|---|
| >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A | Back alignment and structure |
|---|
| >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* | Back alignment and structure |
|---|
| >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 | Back alignment and structure |
|---|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A | Back alignment and structure |
|---|
| >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* | Back alignment and structure |
|---|
| >3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2 | Back alignment and structure |
|---|
| >3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A | Back alignment and structure |
|---|
| >2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2 | Back alignment and structure |
|---|
| >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A | Back alignment and structure |
|---|
| >2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0 | Back alignment and structure |
|---|
| >2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A | Back alignment and structure |
|---|
| >3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} | Back alignment and structure |
|---|
| >2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B | Back alignment and structure |
|---|
| >1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2 | Back alignment and structure |
|---|
| >3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A | Back alignment and structure |
|---|
| >3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
| >3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2 | Back alignment and structure |
|---|
| >2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A | Back alignment and structure |
|---|
| >1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A | Back alignment and structure |
|---|
| >2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2 | Back alignment and structure |
|---|
| >3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2 | Back alignment and structure |
|---|
| >2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A | Back alignment and structure |
|---|
| >1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A | Back alignment and structure |
|---|
| >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* | Back alignment and structure |
|---|
| >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
| >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A | Back alignment and structure |
|---|
| >2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A | Back alignment and structure |
|---|
| >3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A | Back alignment and structure |
|---|
| >3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A | Back alignment and structure |
|---|
| >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 | Back alignment and structure |
|---|
| >2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A | Back alignment and structure |
|---|
| >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A | Back alignment and structure |
|---|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
| >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
| >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 | Back alignment and structure |
|---|
| >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} | Back alignment and structure |
|---|
| >2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B | Back alignment and structure |
|---|
| >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
| >2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A | Back alignment and structure |
|---|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
| >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A | Back alignment and structure |
|---|
| >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 | Back alignment and structure |
|---|
| >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... | Back alignment and structure |
|---|
| >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A | Back alignment and structure |
|---|
| >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* | Back alignment and structure |
|---|
| >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* | Back alignment and structure |
|---|
| >3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A | Back alignment and structure |
|---|
| >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
| >4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* | Back alignment and structure |
|---|
| >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* | Back alignment and structure |
|---|
| >1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 | Back alignment and structure |
|---|
| >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A | Back alignment and structure |
|---|
| >3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13 | Back alignment and structure |
|---|
| >3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 | Back alignment and structure |
|---|
| >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 | Back alignment and structure |
|---|
| >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A | Back alignment and structure |
|---|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
| >3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A | Back alignment and structure |
|---|
| >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A | Back alignment and structure |
|---|
| >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A | Back alignment and structure |
|---|
| >3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* | Back alignment and structure |
|---|
| >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* | Back alignment and structure |
|---|
| >4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A | Back alignment and structure |
|---|
| >2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A | Back alignment and structure |
|---|
| >1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A | Back alignment and structure |
|---|
| >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 | Back alignment and structure |
|---|
| >2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} | Back alignment and structure |
|---|
| >3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A | Back alignment and structure |
|---|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
| >2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 725 | ||||
| d2i7ta1 | 451 | d.157.1.10 (A:9-459) Cleavage and polyadenylation | 3e-18 | |
| d2f3na1 | 64 | a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat | 6e-15 | |
| d1b0xa_ | 72 | a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mou | 1e-14 | |
| d1ucva_ | 81 | a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal | 7e-14 | |
| d2dkfa1 | 431 | d.157.1.10 (A:1-431) Putative RNA-degradation prot | 1e-13 | |
| d1x40a1 | 78 | a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human | 3e-12 | |
| d1b4fa_ | 74 | a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) | 6e-12 | |
| d1kw4a_ | 70 | a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaste | 1e-11 | |
| d1oxja1 | 62 | a.60.1.2 (A:594-655) RNA-binding protein Smaug {Dr | 3e-11 | |
| d2az4a1 | 183 | d.157.1.10 (A:56-238) Hypothetical protein EF2904 | 5e-11 | |
| d1v38a_ | 78 | a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (M | 8e-11 | |
| d1pk3a1 | 63 | a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly | 4e-10 | |
| d1wwva1 | 78 | a.60.1.2 (A:8-85) Connector enhancer of kinase sup | 7e-10 | |
| d2d8ca1 | 85 | a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 { | 5e-09 | |
| d1dxsa_ | 57 | a.60.1.2 (A:) C-terminal domain of p73 {Human (Hom | 6e-09 | |
| d1ow5a_ | 60 | a.60.1.2 (A:) Serine/threonine-protein kinase ste1 | 6e-09 | |
| d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two | 3e-07 | |
| d1zkpa1 | 244 | d.157.1.9 (A:1-244) Hypothetical protein BA1088 (B | 0.001 |
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage and polyadenylation specificity factor subunit 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.0 bits (211), Expect = 3e-18
Identities = 46/350 (13%), Positives = 103/350 (29%), Gaps = 63/350 (18%)
Query: 419 FLTHFHMDHYQGLT----RSFHHGKIYCSLITARLVNMK--------------------- 453
++HFH+DH L ++ G+ + + T +
Sbjct: 60 LISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETD 119
Query: 454 IGIPWDRLQVLPLNQKTTIAGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEM 513
+ D+++ + ++ +AGI C A H G+ + + E K + R +
Sbjct: 120 LEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRH 179
Query: 514 ASMSVLQTCPIHTLILDTTYCNPLYDFPK------------------------------Q 543
+ + LI+++TY +++ + Q
Sbjct: 180 LMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQ 239
Query: 544 EAVIQFVIEAIQAESFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVNAAKFRVLKCLD 603
E ++ + ++ S ++ + KI
Sbjct: 240 ELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKH 299
Query: 604 FSKEDIQWFTTNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFS--- 660
S + S + P + R S R +I+A T +
Sbjct: 300 ISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHI 359
Query: 661 ----KGKKKSPGRRWQQGTIIRYEVPYSEHCSFTELKEFVKFVSPEHIIP 706
+ G++ + Y + +S H + + EF++ + P H+I
Sbjct: 360 MSEPEEITTMSGQKLPLKMSVDY-ISFSAHTDYQQTSEFIRALKPPHVIL 408
|
| >d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]} Length = 64 | Back information, alignment and structure |
|---|
| >d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 | Back information, alignment and structure |
|---|
| >d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 81 | Back information, alignment and structure |
|---|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 | Back information, alignment and structure |
|---|
| >d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]} Length = 78 | Back information, alignment and structure |
|---|
| >d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 74 | Back information, alignment and structure |
|---|
| >d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]} Length = 70 | Back information, alignment and structure |
|---|
| >d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]} Length = 62 | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 | Back information, alignment and structure |
|---|
| >d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 | Back information, alignment and structure |
|---|
| >d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 63 | Back information, alignment and structure |
|---|
| >d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78 | Back information, alignment and structure |
|---|
| >d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
| >d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 | Back information, alignment and structure |
|---|
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
|---|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 725 | |||
| d2dkfa1 | 431 | Putative RNA-degradation protein TTHA0252 {Thermus | 99.98 | |
| d2i7xa1 | 514 | Cleavage factor two protein 2, CFT2 {Baker's yeast | 99.97 | |
| d2i7ta1 | 451 | Cleavage and polyadenylation specificity factor su | 99.96 | |
| d2az4a1 | 183 | Hypothetical protein EF2904 {Enterococcus faecalis | 99.79 | |
| d1zkpa1 | 244 | Hypothetical protein BA1088 (BAS1016) {Bacillus an | 99.69 | |
| d1dxsa_ | 57 | C-terminal domain of p73 {Human (Homo sapiens) [Ta | 99.51 | |
| d1b0xa_ | 72 | EphA4 receptor tyrosine kinases {Mouse (Mus muscul | 99.51 | |
| d1ow5a_ | 60 | Serine/threonine-protein kinase ste11 {Baker's yea | 99.47 | |
| d1y44a1 | 307 | Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId | 99.47 | |
| d1ucva_ | 81 | Ephrin type-A receptor 8, C-terminal domain {Human | 99.47 | |
| d1b4fa_ | 74 | EphB2 receptor {Human (Homo sapiens) [TaxId: 9606] | 99.46 | |
| d1x40a1 | 78 | Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta | 99.43 | |
| d2cbna1 | 305 | Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: | 99.4 | |
| d2f3na1 | 64 | Sh3 and multiple ankyrin repeat domains 3 (Shank3) | 99.39 | |
| d1v38a_ | 78 | Sam-domain protein samsn-1 {Mouse (Mus musculus) [ | 99.38 | |
| d1wwva1 | 78 | Connector enhancer of kinase suppressor of Ras 1, | 99.37 | |
| d1oxja1 | 62 | RNA-binding protein Smaug {Drosophila melanogaster | 99.36 | |
| d2e7ya1 | 280 | Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax | 99.33 | |
| d2d8ca1 | 85 | Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculu | 99.25 | |
| d1kw4a_ | 70 | Polyhomeotic {Drosophila melanogaster [TaxId: 7227 | 99.25 | |
| d1pk3a1 | 63 | Polycomb protein Scm {Fruit fly (Drosophila melano | 99.21 | |
| d1ycga2 | 249 | Nitric oxide reductase N-terminal domain {Moorella | 98.93 | |
| d1e5da2 | 249 | Rubredoxin oxygen:oxidoreductase (ROO), N-terminal | 98.89 | |
| d2qeda1 | 251 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 98.88 | |
| d1qh5a_ | 260 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 98.88 | |
| d1xm8a_ | 254 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 98.86 | |
| d2q0ia1 | 298 | Quinolone signal response protein PqsE {Pseudomona | 98.77 | |
| d1xtoa_ | 304 | Coenzyme PQQ synthesis protein B, PqqB {Pseudomona | 98.76 | |
| d1k07a_ | 262 | Zn metallo-beta-lactamase {Fluoribacter gormanii, | 98.76 | |
| d1vjna_ | 209 | Hypothetical protein TM0207 {Thermotoga maritima [ | 98.73 | |
| d2gmna1 | 264 | Zn metallo-beta-lactamase {Bradyrhizobium japonicu | 98.62 | |
| d2aioa1 | 266 | Zn metallo-beta-lactamase {Xanthomonas maltophilia | 98.62 | |
| d1p9ea_ | 294 | Methyl parathion hydrolase {Pseudomonas sp. WBC-3 | 98.59 | |
| d1mqoa_ | 221 | Zn metallo-beta-lactamase {Bacillus cereus [TaxId: | 98.58 | |
| d1ztca1 | 207 | Hypothetical protein TM0894 {Thermotoga maritima [ | 98.51 | |
| d1x8ha_ | 228 | Zn metallo-beta-lactamase {Aeromonas hydrophila, C | 98.5 | |
| d1ko3a_ | 230 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 98.47 | |
| d1m2xa_ | 219 | Zn metallo-beta-lactamase {Chryseobacterium mening | 98.45 | |
| d1rg6a_ | 67 | C-terminal domain of p63 {Human (Homo sapiens) [Ta | 98.38 | |
| d1wraa1 | 305 | Teichoic acid phosphorylcholine esterase Pce (LytD | 98.34 | |
| d1jjta_ | 220 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 98.33 | |
| d1znba_ | 230 | Zn metallo-beta-lactamase {Bacteroides fragilis [T | 98.29 | |
| d1vmea2 | 250 | ROO-like flavoprotein TM0755, N-terminal domain {T | 98.26 | |
| d2cfua2 | 505 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 97.97 | |
| d2p97a1 | 200 | Hypothetical protein Ava3068 {Anabaena variabilis | 97.09 |
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Putative RNA-degradation protein TTHA0252 species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=1.5e-31 Score=292.81 Aligned_cols=298 Identities=17% Similarity=0.230 Sum_probs=211.4
Q ss_pred CCccEEEeccCchhhhCChhhhc---CCceEEeCHHHHHHHHHHhC-------CC----------CcceEEecCCCEEEE
Q 004877 413 GDCSHWFLTHFHMDHYQGLTRSF---HHGKIYCSLITARLVNMKIG-------IP----------WDRLQVLPLNQKTTI 472 (725)
Q Consensus 413 ~~idaIfLTHaH~DHigGLp~~~---~~~pIY~s~~T~~ll~~~lg-------~~----------~~~~~~l~~ge~~~I 472 (725)
.+|++|||||+|.||+||||.++ ...+||+++.|..++...+. .+ ...+..+.+++++.+
T Consensus 50 ~~id~I~iTH~H~DHigglp~l~~~~~~~~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 129 (431)
T d2dkfa1 50 KEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRL 129 (431)
T ss_dssp GGCCEEECCSCCSTTTTTHHHHHHTTCCSCEEECHHHHHHHHHHHHHHHHHCSSCSSCHHHHHHHHTTEEECCSSCCEES
T ss_pred hhCCEEEECCCChHHHCchHHHHhcCCCCcEEcCHHHHHHHHHHhhhhhhccccccCCHHHHHHHHhhcccccCCCeEEE
Confidence 46899999999999999999654 35899999999988875331 11 124677888999999
Q ss_pred CCEEEEEEecccCCCCeEEEEeccCCeEEEEecccCCChhhhhhcccCCCCccEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 004877 473 AGIDVTCLEANHCPGSIIILFEPQNGKAVLHTGDFRFSEEMASMSVLQTCPIHTLILDTTYCNPLYDFPKQEAVIQFVIE 552 (725)
Q Consensus 473 ggv~Vt~~~agH~pGS~~flIe~~~Gk~IlYTGD~~~~~~~~~~~~l~~~~~DlLIlEaTy~~~~~~~p~~~e~~~~l~e 552 (725)
++++|+++++||++|+++|+|+. ++++|+||||++...............+|+|++|+||+.+ .++.+...+..+.+
T Consensus 130 ~~~~v~~~~~gH~~g~~~~~i~~-~~~~i~ytgD~~~~~~~~l~~~~~~~~~d~li~e~t~~~~--~~~~~~~~~~~~~~ 206 (431)
T d2dkfa1 130 GALSLAFGQAGHLPGSAFVVAQG-EGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDR--PHRPYRETVREFLE 206 (431)
T ss_dssp SSCEEEEEECCSSTTCEEEEEEE-TTEEEEECCSCCCTTSSSSCCCCBCCCCSEEEEECTTSSC--CCCCHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCccEEEEEEE-CCeeeeecCCcCcCCCccCCCchhhhhccccccccccCCC--CcccchHHHHHHHH
Confidence 99999999999999999999997 7889999999998765432222234679999999999986 35566666677777
Q ss_pred HHHHhhcCCCcEEEEecccccHHHHHHHHHHHcC-----CcEEEechHH-HHHHHc---C-CCcc---------------
Q 004877 553 AIQAESFNPKTLFLIGSYTIGKERLFLEVARVLR-----KKIYVNAAKF-RVLKCL---D-FSKE--------------- 607 (725)
Q Consensus 553 ~I~~~~~~~~~~vlIp~~slGreqll~eLa~~l~-----~~I~V~~~~~-~I~~~l---g-~~~~--------------- 607 (725)
.+.. .+..++.|+||+|++||.|.++.++...+ .+|++++... ++.+.+ . +...
T Consensus 207 ~i~~-~~~~~g~vli~~fa~gr~qeil~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (431)
T d2dkfa1 207 ILEK-TLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRP 285 (431)
T ss_dssp HHHH-HHHTTCEEEEEECTTHHHHHHHHHHHTTTTSSCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTCCTTSC
T ss_pred HHHH-HHhcCCeEEEEeccchHHHHHHHHHHHhccccCCccEEEechhHHHHHHHHHhhhhhcCHHHHhhhhcccCcccc
Confidence 7764 55678999999999999998888876653 4899998654 333322 1 0000
Q ss_pred -cccccc--------cCCCCCcEEEEeCCCccchHHHHHHHhhhcCCCCcEEEEeeccccccCCCCCCcchhhhcCceE-
Q 004877 608 -DIQWFT--------TNEHESHIHVMPMWTLASFKRLKHMSNQYAGRFSLIVAFSPTGWTFSKGKKKSPGRRWQQGTII- 677 (725)
Q Consensus 608 -~~~~it--------~~~~e~~v~vvp~~~~~s~~rl~~l~~~~~~~~~~iI~~~~TGw~~~~g~e~t~gr~~~~G~~~- 677 (725)
...... .......+++++.+++.. ++...+...+.......|. ++||+ .++++|+++..+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~vii~~~~~~~~-~~~~~~~~~~~~~~~n~vi--~tg~~----~~gt~g~~l~~~~~~~ 358 (431)
T d2dkfa1 286 AGLEVVEHTEASKALNRAPGPMVVLAGSGMLAG-GRILHHLKHGLSDPRNALV--FVGYQ----PQGGLGAEIIARPPAV 358 (431)
T ss_dssp TTBCCCCSHHHHHHHHHCCSSEEEEEECTTSSS-STHHHHHHSSSSSTTCEEE--ESSCC----CTTSTTHHHHTCCSEE
T ss_pred ccccccCCHHHHHHHHhCCCCceeecccccccc-chHHHHHHHhccCCcccee--eeecc----CCCcHHHHHhccCCeE
Confidence 000000 012345677777776643 3444444555555555554 37775 356777765433211
Q ss_pred ------------EEE-eccCCCCCHHHHHHHHHHcCCCEEEEEeeCCChHHHHHHHHHhhC
Q 004877 678 ------------RYE-VPYSEHCSFTELKEFVKFVSPEHIIPSVNNDGRDSANAMVSLLLN 725 (725)
Q Consensus 678 ------------v~~-vpyS~HAs~~EL~~fV~~lrPk~VIPtv~hg~~~~~~~m~~~l~~ 725 (725)
+.. ..||+|||++||++|++ .|++||| +||+++.+.+|++.+.+
T Consensus 359 ~~~~~~~~~~~~v~~~~~~SgHa~~~eL~~~i~--~~~~vi~--vHGe~~~~~~~a~~~~~ 415 (431)
T d2dkfa1 359 RILGEEVPLRASVHTLGGFSGHAGQDELLDWLQ--GEPRVVL--VHGEEEKLLALGKLLAL 415 (431)
T ss_dssp EETTEEEECCSEEEECTTSCSSCCHHHHHHHHT--TCSCEEE--ESSCHHHHHHHHHHHHT
T ss_pred EEcCcEEEEeeEEEECCcccCCCCHHHHHHHHh--cCCeEEE--EcCCHHHHHHHHHHHHh
Confidence 112 24899999999999997 4667884 79999999999988753
|
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
| >d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
| >d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} | Back information, alignment and structure |
|---|
| >d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
| >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} | Back information, alignment and structure |
|---|
| >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} | Back information, alignment and structure |
|---|
| >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} | Back information, alignment and structure |
|---|
| >d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} | Back information, alignment and structure |
|---|
| >d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} | Back information, alignment and structure |
|---|