Citrus Sinensis ID: 005564

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQNGKGF
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHccccccccccccEEEEEEEEEccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHccccccccccHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEcccccEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHccccEEEcccccEEEcccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccEEEEEccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccc
cccccHHHHHHcccccccEcccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHccHcccHHHHHHccccccccHcccEEEEEccccccccHHHHcHHHHEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEccHHHEEHccccHcHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccEEEccccccHHHHHcccccccccccccccccccccccccEEEEEEEcccccccEEEcccEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHcccEEEccccEEEEEcccHHHHHHHHHHHHHcccccHHcccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHcEEccccccEEEEEccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccc
mttsfgaantvipnnpnirirsfnglkpshslsirtnlrafpvpyasrssvvravstpvkpetetktetKRSKVEIIKEQSnfiryplneelltdapnvnESATQLIKFHGSyqqynrdergaKSYSFMLrtknpcgkvsnqlYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMgstlgacgdlnrnvlappaplvrkdYLFAQKTAENIAALltpqsgfyydmwvdgeqimtaeppevvkarndnshgtnfpdspepiygtqflprkFKVAvtvptdnsvdiltndIGVVvvsdengepqgfnlyvgggmgrthrlettfprlgeqlgyvpkeDILYAVKAIVVTQrengrrddrkySRMKYLISSWGIEKFRSVVEQYygkkfepfrqlpewefkshlgwheqgdgglfcglhvdngrIAGKMKKTLREIIEKYNlnvritpnqnIILCDIRKAWKRPITTALAQAGlllpryvdplnitamacpslplcplaiteaeRGIPDILKRIRAVFEKVGLKYNESVVIRVtgcpngcarpymaelglvgdgpnsyqiwlggthnqTTLARTFMNKVKVQELEKVFEPLFYYWKqkrqtkdesfgdftnRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAsqqngkgf
mttsfgaantvipnnpniriRSFNGLKPSHSLSIRTNLRAfpvpyasrssvvravstpvkpetetktetkrskveiikeqsnfirYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTtrqtfqlhgvlkkdlKTVMRSIIRSMGstlgacgdlnRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVptdnsvdiltNDIGVVvvsdengepQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIvvtqrengrrddrkysRMKYlisswgiekfRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKynlnvritpnqNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKvglkynesvVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFvasqqngkgf
MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYasrssvvravstpvkpetetktetkrskveIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGtlrlttrqtfqlHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQNGKGF
*****************IRIRSF*********SIRTNLRAFPVPY*******************************I**QSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRD*RGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIM**************************IYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENG***DRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFV*********
**************************************************************************EIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEG*******Y*LKLFADKETYEAVDE*****NKNAHQLAIEVIRNFV*********
MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASR***********************SKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQNGKGF
********N**IPNNPNIRIRSFNGLKPSHSL*I***L*A*PV**ASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQ*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQNGKGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query691 2.2.26 [Sep-21-2011]
O82802693 Sulfite reductase 1 [ferr N/A no 0.991 0.988 0.802 0.0
Q75NZ0685 Sulfite reductase [ferred N/A no 0.989 0.998 0.805 0.0
Q9LZ66642 Sulfite reductase [ferred yes no 0.914 0.984 0.793 0.0
Q9AWB2573 Sulfite reductase [ferred no no 0.824 0.994 0.838 0.0
O23813635 Sulfite reductase [ferred N/A no 0.874 0.951 0.763 0.0
P72854635 Sulfite reductase [ferred N/A no 0.835 0.908 0.517 1e-179
P30008624 Sulfite reductase [ferred yes no 0.848 0.939 0.498 1e-173
B8CJV9565 Sulfite reductase [NADPH] yes no 0.777 0.950 0.385 1e-107
A3QAP0565 Sulfite reductase [NADPH] yes no 0.775 0.948 0.382 1e-106
Q0HFL7565 Sulfite reductase [NADPH] yes no 0.781 0.955 0.383 1e-106
>sp|O82802|SIR1_TOBAC Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum GN=SIR1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1176 bits (3042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/694 (80%), Positives = 629/694 (90%), Gaps = 9/694 (1%)

Query: 1   MTTSFGAA-NTVIPNNPN--IRIRSFNGLKP-SHSLSIRTNLRAFPVPYASR-SSVVRAV 55
           MTTSFGAA N  + ++PN  ++I +F+GLK  S+SL +   L  F     S  SS+VRAV
Sbjct: 1   MTTSFGAAINIAVADDPNPKLQIHNFSGLKSTSNSLLLSRRLHVFQSFSPSNPSSIVRAV 60

Query: 56  STPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQ 115
           STP KP      E KRSKVEI KEQSNFIRYPLNEE+L DAPN+NE+ATQLIKFHGSY Q
Sbjct: 61  STPAKP---AAVEPKRSKVEIFKEQSNFIRYPLNEEILNDAPNINEAATQLIKFHGSYMQ 117

Query: 116 YNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKK 175
           Y+RDERG +SYSFMLRTKNP G+V N+LYL MDDLADQFGIGTLRLTTRQTFQLHGVLKK
Sbjct: 118 YDRDERGGRSYSFMLRTKNPGGEVPNRLYLVMDDLADQFGIGTLRLTTRQTFQLHGVLKK 177

Query: 176 DLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFY 235
           +LKTVM +II++MGSTLGACGDLNRNVLAP AP  +KDY+FA++TA+NIAALLTPQSGFY
Sbjct: 178 NLKTVMSTIIKNMGSTLGACGDLNRNVLAPAAPFAKKDYMFAKQTADNIAALLTPQSGFY 237

Query: 236 YDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSV 295
           YD+WVDGE++MTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFK+AVTVPTDNSV
Sbjct: 238 YDVWVDGEKVMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSV 297

Query: 296 DILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVK 355
           DI TNDIGVVVVS+E+GEPQGFN+YVGGGMGRTHR+ETTFPRL E LGYVPKEDILYAVK
Sbjct: 298 DIFTNDIGVVVVSNEDGEPQGFNIYVGGGMGRTHRMETTFPRLAEPLGYVPKEDILYAVK 357

Query: 356 AIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLG 415
           AIVVTQRENGRRDDR+YSR+KYL+SSWGIEKFRSV EQYYGKKF+P R+LPEWEFKS+LG
Sbjct: 358 AIVVTQRENGRRDDRRYSRLKYLLSSWGIEKFRSVTEQYYGKKFQPCRELPEWEFKSYLG 417

Query: 416 WHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPI 475
           WHE GDG LFCGLHVDNGR+ G MKK LRE+IEKYNLNVR+TPNQNIILC+IR+AWKRPI
Sbjct: 418 WHEAGDGSLFCGLHVDNGRVKGAMKKALREVIEKYNLNVRLTPNQNIILCNIRQAWKRPI 477

Query: 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535
           TT LAQ GLL PRYVDPLN+TAMACP+ PLCPLAITEAERGIPDILKR+RA+FE+VGLKY
Sbjct: 478 TTVLAQGGLLQPRYVDPLNLTAMACPAFPLCPLAITEAERGIPDILKRVRAIFERVGLKY 537

Query: 536 NESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELE 595
           +ESVVIR+TGCPNGCARPYMAELGLVGDGPNSYQIWLGGT NQT+LA+TF +K+KVQ+LE
Sbjct: 538 SESVVIRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGTPNQTSLAKTFKDKLKVQDLE 597

Query: 596 KVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKET 655
           KV EPLF++W++KRQ+K ESFGDFTNRMGFEKL E VEKWEG  ++++RYNLKLFAD+ET
Sbjct: 598 KVLEPLFFHWRRKRQSK-ESFGDFTNRMGFEKLGEFVEKWEGIPESSSRYNLKLFADRET 656

Query: 656 YEAVDELAKLQNKNAHQLAIEVIRNFVASQQNGK 689
           YEA+D LA +Q+KNAHQLAIEV+RN+VASQQNGK
Sbjct: 657 YEAMDALASIQDKNAHQLAIEVVRNYVASQQNGK 690
DNA-binding protein that binds to both double-stranded and single-stranded DNA without significant sequence specificity to reversibly repress the transcriptional activity of chloroplast nucleoids by promoting DNA compaction and possibly regulate DNA replication.
Nicotiana tabacum (taxid: 4097)
EC: 1EC: .EC: 8EC: .EC: 7EC: .EC: 1
>sp|Q75NZ0|SIR_PEA Sulfite reductase [ferredoxin], chloroplastic OS=Pisum sativum GN=SIR PE=1 SV=2 Back     alignment and function description
>sp|Q9LZ66|SIR_ARATH Sulfite reductase [ferredoxin], chloroplastic OS=Arabidopsis thaliana GN=SIR PE=1 SV=1 Back     alignment and function description
>sp|Q9AWB2|SIR_SOYBN Sulfite reductase [ferredoxin], chloroplastic (Fragment) OS=Glycine max GN=SIR PE=1 SV=1 Back     alignment and function description
>sp|O23813|SIR_MAIZE Sulfite reductase [ferredoxin], chloroplastic OS=Zea mays GN=SIR PE=1 SV=1 Back     alignment and function description
>sp|P72854|SIR_SYNY3 Sulfite reductase [ferredoxin] OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sir PE=1 SV=1 Back     alignment and function description
>sp|P30008|SIR_SYNE7 Sulfite reductase [ferredoxin] OS=Synechococcus elongatus (strain PCC 7942) GN=sir PE=3 SV=2 Back     alignment and function description
>sp|B8CJV9|CYSI_SHEPW Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=cysI PE=3 SV=1 Back     alignment and function description
>sp|A3QAP0|CYSI_SHELP Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=cysI PE=3 SV=1 Back     alignment and function description
>sp|Q0HFL7|CYSI_SHESM Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain MR-4) GN=cysI PE=3 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
UNIPROTKB|Q75NZ0685 SIR "Sulfite reductase [ferred 0.989 0.998 0.765 1.4e-293
UNIPROTKB|O82802693 SIR1 "Sulfite reductase 1 [fer 0.992 0.989 0.759 2e-292
TAIR|locus:2184457642 SIR "sulfite reductase" [Arabi 0.910 0.979 0.759 1.7e-263
UNIPROTKB|Q9AWB2573 SIR "Sulfite reductase [ferred 0.826 0.996 0.786 1e-249
UNIPROTKB|O23813635 SIR "Sulfite reductase [ferred 0.817 0.889 0.769 7.4e-244
UNIPROTKB|P72854635 sir "Sulfite reductase [ferred 0.874 0.951 0.480 6.3e-156
TIGR_CMR|SO_3737565 SO_3737 "sulfite reductase (NA 0.520 0.637 0.410 1e-92
SGD|S0000038981442 MET5 "Sulfite reductase beta s 0.762 0.365 0.362 1.1e-86
POMBASE|SPAC10F6.01c1473 sir1 "sulfite reductase Sir1" 0.767 0.359 0.356 8.8e-86
UNIPROTKB|Q9KUX3577 cysI "Sulfite reductase [NADPH 0.516 0.618 0.380 2.8e-84
UNIPROTKB|Q75NZ0 SIR "Sulfite reductase [ferredoxin], chloroplastic" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
 Score = 2819 (997.4 bits), Expect = 1.4e-293, P = 1.4e-293
 Identities = 528/690 (76%), Positives = 594/690 (86%)

Query:     1 MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYXXXXXXXXXXXXXXX 60
             MTTSF AA      +P ++I +++GL+ S + S  +   A  VP                
Sbjct:     1 MTTSFAAAAL---RDPKLQIPNYHGLRSSSAASSLSR-NALSVP-SSTRSSSLIRAVSTP 55

Query:    61 XXXXXXXXXXXXXXXIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDE 120
                            I KEQSNFIRYPLNE++LTDAPN++E+ATQLIKFHGSYQQYNRDE
Sbjct:    56 AKSETATEKKRSKVEIFKEQSNFIRYPLNEDMLTDAPNLSEAATQLIKFHGSYQQYNRDE 115

Query:   121 RGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGXXXXXXXXXXXXHGVLKKDLKTV 180
             RG+++YSFM+RTKNPCGKVSNQLYLTMDDLADQFGIG            HGV+KKDLKTV
Sbjct:   116 RGSRTYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVVKKDLKTV 175

Query:   181 MRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWV 240
             M SIIR+MGS+LGACGDLNRNVLAP AP+V KDYLFAQ+T+ENIAALLTPQSGFYYD+WV
Sbjct:   176 MGSIIRNMGSSLGACGDLNRNVLAPAAPIVSKDYLFAQETSENIAALLTPQSGFYYDVWV 235

Query:   241 DGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTN 300
             DGE+ M+AEPPEV++ARNDNSHGTNF DSPEPIYGTQFLPRKFK+AVTVPTDNSVDILTN
Sbjct:   236 DGERFMSAEPPEVIQARNDNSHGTNFTDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTN 295

Query:   301 DIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVT 360
             DIGVVVV+ + GEPQGFNLYVGGGMGRTHR+ETTFPRL E LGYVPKEDILYAVKAIVVT
Sbjct:   296 DIGVVVVTGDGGEPQGFNLYVGGGMGRTHRMETTFPRLAEPLGYVPKEDILYAVKAIVVT 355

Query:   361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQG 420
             QRENGRRDDR+YSRMKYLI SWGI+KFR+VVE+YYGKKFEPFR LPEWEFKS+LGWH+QG
Sbjct:   356 QRENGRRDDRRYSRMKYLIDSWGIDKFRNVVEEYYGKKFEPFRSLPEWEFKSYLGWHQQG 415

Query:   421 DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALA 480
             DGGLFCGLHVDNGRIAGKMK  LRE+IEKY+LNVR+TPNQN+IL DIR AWKRPITT L+
Sbjct:   416 DGGLFCGLHVDNGRIAGKMKTALREVIEKYHLNVRLTPNQNLILTDIRAAWKRPITTILS 475

Query:   481 QAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVV 540
             QAGLLLPRYVDPLNITAMACP+ PLCPLAITEAERGIP ILKRIR +FEKVGLKYNESVV
Sbjct:   476 QAGLLLPRYVDPLNITAMACPAFPLCPLAITEAERGIPSILKRIRDMFEKVGLKYNESVV 535

Query:   541 IRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEP 600
             +R+TGCPNGCARPYMAELGLVGDGPNSYQIWLGG+ NQT++AR+FM+KVK Q+LEKV EP
Sbjct:   536 VRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGSSNQTSIARSFMDKVKPQDLEKVLEP 595

Query:   601 LFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVD 660
             LFY+WKQKRQ+K ESFGDFT R+GFEKL+E +EKWEGPA    R+NLKLF DK+TYEA+D
Sbjct:   596 LFYHWKQKRQSK-ESFGDFTVRLGFEKLKEFIEKWEGPAVPPTRHNLKLFTDKDTYEAMD 654

Query:   661 ELAKLQNKNAHQLAIEVIRNFVASQQNGKG 690
              LAKLQNKNAHQLA+EV+RN++AS  NGKG
Sbjct:   655 GLAKLQNKNAHQLAMEVVRNYIASNLNGKG 684
GO:0003677 "DNA binding" evidence=IDA
GO:0006275 "regulation of DNA replication" evidence=ISS
GO:0006323 "DNA packaging" evidence=ISS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0019424 "sulfide oxidation, using siroheme sulfite reductase" evidence=ISS;IDA
GO:0042644 "chloroplast nucleoid" evidence=IDA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0050311 "sulfite reductase (ferredoxin) activity" evidence=ISS
UNIPROTKB|O82802 SIR1 "Sulfite reductase 1 [ferredoxin], chloroplastic" [Nicotiana tabacum (taxid:4097)] Back     alignment and assigned GO terms
TAIR|locus:2184457 SIR "sulfite reductase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9AWB2 SIR "Sulfite reductase [ferredoxin], chloroplastic" [Glycine max (taxid:3847)] Back     alignment and assigned GO terms
UNIPROTKB|O23813 SIR "Sulfite reductase [ferredoxin], chloroplastic" [Zea mays (taxid:4577)] Back     alignment and assigned GO terms
UNIPROTKB|P72854 sir "Sulfite reductase [ferredoxin]" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3737 SO_3737 "sulfite reductase (NADPH) hemoprotein beta-component (cysI)" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
SGD|S000003898 MET5 "Sulfite reductase beta subunit" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPAC10F6.01c sir1 "sulfite reductase Sir1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUX3 cysI "Sulfite reductase [NADPH] hemoprotein beta-component" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23813SIR_MAIZE1, ., 8, ., 7, ., 10.76390.87400.9511N/Ano
Q9AWB2SIR_SOYBN1, ., 8, ., 7, ., 10.83880.82480.9947nono
Q9LZ66SIR_ARATH1, ., 8, ., 7, ., 10.79340.91460.9844yesno
Q75NZ0SIR_PEA1, ., 8, ., 7, ., 10.80570.98980.9985N/Ano
P72854SIR_SYNY31, ., 8, ., 7, ., 10.51780.83500.9086N/Ano
P30008SIR_SYNE71, ., 8, ., 7, ., 10.49830.84800.9391yesno
O82802SIR1_TOBAC1, ., 8, ., 7, ., 10.80250.99130.9884N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.8.10.766
4th Layer1.8.1.20.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
PLN00178623 PLN00178, PLN00178, sulfite reductase 0.0
TIGR02042577 TIGR02042, sir, ferredoxin-sulfite reductase 0.0
PRK13504569 PRK13504, PRK13504, sulfite reductase subunit beta 0.0
TIGR02041541 TIGR02041, CysI, sulfite reductase (NADPH) hemopro 1e-150
COG0155510 COG0155, CysI, Sulfite reductase, beta subunit (he 1e-147
PRK09567593 PRK09567, nirA, ferredoxin-nitrite reductase; Revi 4e-45
pfam01077154 pfam01077, NIR_SIR, Nitrite and sulphite reductase 3e-39
PRK09566513 PRK09566, nirA, ferredoxin-nitrite reductase; Revi 5e-39
PLN02431587 PLN02431, PLN02431, ferredoxin--nitrite reductase 3e-25
TIGR02435390 TIGR02435, CobG, precorrin-3B synthase 2e-18
pfam0346067 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase 1e-13
pfam0346067 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase 3e-12
pfam01077154 pfam01077, NIR_SIR, Nitrite and sulphite reductase 1e-11
COG2221317 COG2221, DsrA, Dissimilatory sulfite reductase (de 2e-08
COG2221317 COG2221, DsrA, Dissimilatory sulfite reductase (de 3e-08
COG1251793 COG1251, NirB, NAD(P)H-nitrite reductase [Energy p 6e-06
COG0155 510 COG0155, CysI, Sulfite reductase, beta subunit (he 4e-05
COG1251793 COG1251, NirB, NAD(P)H-nitrite reductase [Energy p 3e-04
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase Back     alignment and domain information 
 Score = 1236 bits (3199), Expect = 0.0
 Identities = 482/623 (77%), Positives = 529/623 (84%), Gaps = 3/623 (0%)

Query: 20  IRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKE 79
             S   L  +   +  T     P    S   V+RAV+TPVK  T      KRSKVEIIKE
Sbjct: 4   SSSAVSLLLARQSAATTAFSTGPSRSRSGRLVIRAVATPVKKPT--TEPPKRSKVEIIKE 61

Query: 80  QSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKV 139
            SNF+R+PLNEEL T+APN+NE A QLIKFHGSYQQ NR++RG K+Y FMLRTK P GKV
Sbjct: 62  NSNFLRHPLNEELATEAPNINEDAVQLIKFHGSYQQDNREKRGGKAYQFMLRTKQPAGKV 121

Query: 140 SNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLN 199
            N+LYL MDDLAD+FGIGTLRLTTRQTFQLHGVLKKDLKTVM SII++MGSTLGACGD+N
Sbjct: 122 PNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVN 181

Query: 200 RNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARND 259
           RNVLAP AP  RKDYLFAQ+ A+NIAALL PQSG YYD+WVDGE+IM+AEPPEV KARND
Sbjct: 182 RNVLAPAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARND 241

Query: 260 NSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNL 319
           NSHGTNF DSPEPIYGTQFLPRKFK+AVTVP DNSVDILTNDIGVVVVSDE GEPQG+N+
Sbjct: 242 NSHGTNFEDSPEPIYGTQFLPRKFKIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNI 301

Query: 320 YVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLI 379
           YVGGGMGRTHR ETTFPRL + LGYVPKEDILYAVKAIV TQR+ GRRDDRK SRMKYL+
Sbjct: 302 YVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQRDYGRRDDRKQSRMKYLV 361

Query: 380 SSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKM 439
            SWGIEKFRSVVEQYYGKKFEPFR+LPEWEFKS+LGWHEQGDG LF G+HVDNGRI G+ 
Sbjct: 362 HSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEA 421

Query: 440 KKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMA 499
           KK LRE+IEKYNL VR+TPNQN+ILCDIR AWK PIT ALA AGLL P  VDPLN TAMA
Sbjct: 422 KKALREVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMA 481

Query: 500 CPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELG 559
           CP+LPLCPLAITEAERGIPDILKR+RA+F KVGLKY+ESVV+R+TGCPNGCARPYMAELG
Sbjct: 482 CPALPLCPLAITEAERGIPDILKRVRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELG 541

Query: 560 LVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDF 619
            VGDGPNSYQIWLGGT NQT LA  FM+KVKV +LEKV EPLFY WKQ+RQ K ESFGDF
Sbjct: 542 FVGDGPNSYQIWLGGTPNQTRLAEPFMDKVKVDDLEKVLEPLFYMWKQQRQEK-ESFGDF 600

Query: 620 TNRMGFEKLQELVEKWEGPAKAT 642
           TNR+GFE L+E +E + G   A 
Sbjct: 601 TNRVGFEALKEYIESYAGSVVAP 623

Length = 623
>gnl|CDD|131097 TIGR02042, sir, ferredoxin-sulfite reductase Back     alignment and domain information
>gnl|CDD|237402 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein, beta-component Back     alignment and domain information
>gnl|CDD|223233 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|236573 PRK09567, nirA, ferredoxin-nitrite reductase; Reviewed Back     alignment and domain information
>gnl|CDD|216287 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain Back     alignment and domain information
>gnl|CDD|236572 PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed Back     alignment and domain information
>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase Back     alignment and domain information
>gnl|CDD|233866 TIGR02435, CobG, precorrin-3B synthase Back     alignment and domain information
>gnl|CDD|217572 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like half domain Back     alignment and domain information
>gnl|CDD|217572 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like half domain Back     alignment and domain information
>gnl|CDD|216287 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain Back     alignment and domain information
>gnl|CDD|225131 COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|225131 COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223233 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 691
PLN00178623 sulfite reductase 100.0
TIGR02042577 sir ferredoxin-sulfite reductase. monomeric enzyme 100.0
KOG0560638 consensus Sulfite reductase (ferredoxin) [Inorgani 100.0
PRK13504569 sulfite reductase subunit beta; Provisional 100.0
TIGR02041541 CysI sulfite reductase (NADPH) hemoprotein, beta-c 100.0
PRK09567593 nirA ferredoxin-nitrite reductase; Reviewed 100.0
COG0155510 CysI Sulfite reductase, beta subunit (hemoprotein) 100.0
PLN02431587 ferredoxin--nitrite reductase 100.0
PRK09566513 nirA ferredoxin-nitrite reductase; Reviewed 100.0
TIGR02435390 CobG precorrin-3B synthase. An iron-sulfur protein 100.0
PRK14989847 nitrite reductase subunit NirD; Provisional 100.0
TIGR02374785 nitri_red_nirB nitrite reductase [NAD(P)H], large 100.0
TIGR02066341 dsrB sulfite reductase, dissimilatory-type beta su 100.0
PRK09566 513 nirA ferredoxin-nitrite reductase; Reviewed 100.0
COG2221317 DsrA Dissimilatory sulfite reductase (desulfovirid 100.0
TIGR02066341 dsrB sulfite reductase, dissimilatory-type beta su 100.0
COG2221317 DsrA Dissimilatory sulfite reductase (desulfovirid 100.0
TIGR02374785 nitri_red_nirB nitrite reductase [NAD(P)H], large 100.0
TIGR02912314 sulfite_red_C sulfite reductase, subunit C. Member 100.0
TIGR02064402 dsrA sulfite reductase, dissimilatory-type alpha s 100.0
PLN02431 587 ferredoxin--nitrite reductase 100.0
PRK13504 569 sulfite reductase subunit beta; Provisional 100.0
PRK14989847 nitrite reductase subunit NirD; Provisional 100.0
TIGR02435390 CobG precorrin-3B synthase. An iron-sulfur protein 100.0
PRK09567 593 nirA ferredoxin-nitrite reductase; Reviewed 100.0
TIGR02041 541 CysI sulfite reductase (NADPH) hemoprotein, beta-c 100.0
TIGR02064402 dsrA sulfite reductase, dissimilatory-type alpha s 100.0
PLN00178 623 sulfite reductase 100.0
TIGR02042 577 sir ferredoxin-sulfite reductase. monomeric enzyme 100.0
COG1251793 NirB NAD(P)H-nitrite reductase [Energy production 100.0
TIGR02912314 sulfite_red_C sulfite reductase, subunit C. Member 100.0
COG0155 510 CysI Sulfite reductase, beta subunit (hemoprotein) 99.97
PF01077157 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S dom 99.96
PF01077157 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S dom 99.96
COG1251793 NirB NAD(P)H-nitrite reductase [Energy production 99.9
KOG0560 638 consensus Sulfite reductase (ferredoxin) [Inorgani 99.86
PF0346069 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin 99.62
PF0346069 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin 99.49
PRK00366360 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s 99.34
PRK00366360 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s 98.48
COG0821361 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat 97.94
TIGR00612346 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 97.89
PF04551359 GcpE: GcpE protein; InterPro: IPR004588 This prote 97.66
PLN02925733 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 96.97
PRK00694606 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 96.42
PRK02048611 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 95.83
PF04551359 GcpE: GcpE protein; InterPro: IPR004588 This prote 94.96
cd01916731 ACS_1 Acetyl-CoA synthase (ACS), also known as ace 93.63
TIGR00612346 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 93.24
PLN02925733 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 92.41
COG0821361 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat 91.1
PF0140239 RHH_1: Ribbon-helix-helix protein, copG family; In 88.92
PRK00941781 acetyl-CoA decarbonylase/synthase complex subunit 85.67
PF1265144 RHH_3: Ribbon-helix-helix domain 84.73
cd01916 731 ACS_1 Acetyl-CoA synthase (ACS), also known as ace 84.52
PRK00694606 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 82.67
>PLN00178 sulfite reductase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-139  Score=1198.27  Aligned_cols=593  Identities=80%  Similarity=1.288  Sum_probs=563.9

Q ss_pred             CCCccccchhhccCCCCCCcccccCCCCChhhhhhhhcCCCccchHHhhhhcCCCCCHhHHHHHhhceeeeeccCcccCC
Q 005564           44 PYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGA  123 (691)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~E~iK~~~~~l~~~~~~~l~~~~~~~~~~~~~~lk~~G~y~q~~rd~r~~  123 (691)
                      +.+++.+++.||++|++++++.  .+|+||+|+||++||+|+++++++|++..++++++|.+++||||+|+|+|||.|.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~E~~K~~s~~l~~~~~~~l~~~~~~~~~~d~~~~K~~G~y~q~~r~~r~~  105 (623)
T PLN00178         28 RSRSGRLVIRAVATPVKKPTTE--PPKRSKVEIIKENSNFLRHPLNEELATEAPNINEDAVQLIKFHGSYQQDNREKRGG  105 (623)
T ss_pred             cccCCCcceeeeecCCCCcccc--cCCCCHHHHHhhhcCCCcchHHHHHHhccCCCChhHHhHhheeeeeeecCccccCC
Confidence            3333457889999999998764  67999999999999999999999999888899999999999999999999999999


Q ss_pred             ccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 005564          124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVL  203 (691)
Q Consensus       124 ~~~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~  203 (691)
                      ++|+||||+|+|+|.||++||++|++||++||+|++|||||||||||||.++|+++++++|.+.+++|.++|||++||||
T Consensus       106 ~~~~fMlRvriPgG~lt~~Q~~~la~iA~~yg~g~l~lTTRq~iQlhgI~~~dl~~i~~~L~~~gl~t~~a~gD~~RNV~  185 (623)
T PLN00178        106 KAYQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVNRNVL  185 (623)
T ss_pred             cCcceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEecccceEEcCCCHHHHHHHHHHHHHcCCCcccccCCCCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999995556699999999999999


Q ss_pred             cCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCce
Q 005564          204 APPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKF  283 (691)
Q Consensus       204 acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKf  283 (691)
                      +||+|++..++.|++++|++|+++|+|+|++|+|+|||++++.+.++++++.+++++.++++|.+++||+||.++|||||
T Consensus       186 ~~p~p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ep~yg~~~LPRKF  265 (623)
T PLN00178        186 APAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLPRKF  265 (623)
T ss_pred             cCCCcCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhcccccccccCCccccccccCCCCCe
Confidence            99999888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHH
Q 005564          284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE  363 (691)
Q Consensus       284 Ki~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd  363 (691)
                      ||+|+||++||+++++|||||+++.+++|+..||+|+||||||++|++..|||++|+.++||++||++++++||+++|+|
T Consensus       266 Kiavsg~~~n~~~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~~v~~e~v~~v~~av~~~~rd  345 (623)
T PLN00178        266 KIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQRD  345 (623)
T ss_pred             EEEEecCccccccccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccCcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987656667999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCcchhhhHHHHHHhhchhHHHHHHHHHhCCCCCCCCCCCccccccccceEeccCCcEEEEEEeCCCCCCHHHHHHH
Q 005564          364 NGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTL  443 (691)
Q Consensus       364 ~G~R~~R~~aRlk~li~~~G~e~f~e~l~~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~v~vp~Grit~~ql~~L  443 (691)
                      ||+|+||+++||||+|++||+++|+++|++++|+++++..+.+.+...||+|||+|+||.|++++++|+|+|+++|++.|
T Consensus       346 ~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~g~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grit~~~l~~L  425 (623)
T PLN00178        346 YGRRDDRKQSRMKYLVHSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEAKKAL  425 (623)
T ss_pred             hCcccchhhhHHHHHHHHHCHHHHHHHHHHHhcccccCCCCccccccccceeEEEccCCcEEEEEecCCeecCHHHHHHH
Confidence            99999999999999999999999999999999999988877778888999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHH
Q 005564          444 REIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKR  523 (691)
Q Consensus       444 a~iAe~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~  523 (691)
                      ++||++||.+||||++|||+|+||+++++++|++.|+++||.+....++.++++|||+|+++|++|++||+++++.|.++
T Consensus       426 a~iAe~yg~~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~  505 (623)
T PLN00178        426 REVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKR  505 (623)
T ss_pred             HHHHHHhCCcEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHH
Confidence            99999999899999999999999999999999999999999876557899999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHH
Q 005564          524 IRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFY  603 (691)
Q Consensus       524 l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~  603 (691)
                      ++..+.+.+++.+.+|+||||||||+|++|+++||||+|.+.++|+||+||+.+++++|+.+...|+.++++++|++++.
T Consensus       506 l~~~~~~~~l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~~~~Y~I~lGG~~~~~~la~~~~~~V~~eei~~~le~ll~  585 (623)
T PLN00178        506 VRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELGFVGDGPNSYQIWLGGTPNQTRLAEPFMDKVKVDDLEKVLEPLFY  585 (623)
T ss_pred             HHHHHhhcCCCCCCceEEEEeCCCccccccccCcEEEEcCCCCeEEEEECCCCCcccccchhhcCcCHHHHHHHHHHHHH
Confidence            99988888887678999999999999999999999999987789999999987788999999999999999999999999


Q ss_pred             HHHHhcccCCCcHHHHHHhhCHHHHHHHHHhHcCCc
Q 005564          604 YWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPA  639 (691)
Q Consensus       604 ~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~~~  639 (691)
                      +|++++++ +|+|++|++|+|+++|++.+..+.+..
T Consensus       586 ~y~~~r~~-~E~f~df~~R~G~e~~~~~~~~~~~~~  620 (623)
T PLN00178        586 MWKQQRQE-KESFGDFTNRVGFEALKEYIESYAGSV  620 (623)
T ss_pred             HHHHhCcC-CCCHHHHHHHcCcHHHHHHHHHhcCCc
Confidence            99999998 999999999999999999999888653

>TIGR02042 sir ferredoxin-sulfite reductase Back     alignment and domain information
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13504 sulfite reductase subunit beta; Provisional Back     alignment and domain information
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component Back     alignment and domain information
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed Back     alignment and domain information
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02431 ferredoxin--nitrite reductase Back     alignment and domain information
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed Back     alignment and domain information
>TIGR02435 CobG precorrin-3B synthase Back     alignment and domain information
>PRK14989 nitrite reductase subunit NirD; Provisional Back     alignment and domain information
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit Back     alignment and domain information
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit Back     alignment and domain information
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed Back     alignment and domain information
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit Back     alignment and domain information
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit Back     alignment and domain information
>TIGR02912 sulfite_red_C sulfite reductase, subunit C Back     alignment and domain information
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit Back     alignment and domain information
>PLN02431 ferredoxin--nitrite reductase Back     alignment and domain information
>PRK13504 sulfite reductase subunit beta; Provisional Back     alignment and domain information
>PRK14989 nitrite reductase subunit NirD; Provisional Back     alignment and domain information
>TIGR02435 CobG precorrin-3B synthase Back     alignment and domain information
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed Back     alignment and domain information
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component Back     alignment and domain information
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit Back     alignment and domain information
>PLN00178 sulfite reductase Back     alignment and domain information
>TIGR02042 sir ferredoxin-sulfite reductase Back     alignment and domain information
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] Back     alignment and domain information
>TIGR02912 sulfite_red_C sulfite reductase, subunit C Back     alignment and domain information
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively Back     alignment and domain information
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively Back     alignment and domain information
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] Back     alignment and domain information
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively Back     alignment and domain information
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively Back     alignment and domain information
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed Back     alignment and domain information
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed Back     alignment and domain information
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] Back     alignment and domain information
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Back     alignment and domain information
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli Back     alignment and domain information
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Back     alignment and domain information
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated Back     alignment and domain information
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional Back     alignment and domain information
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli Back     alignment and domain information
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA Back     alignment and domain information
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Back     alignment and domain information
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Back     alignment and domain information
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] Back     alignment and domain information
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number Back     alignment and domain information
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated Back     alignment and domain information
>PF12651 RHH_3: Ribbon-helix-helix domain Back     alignment and domain information
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA Back     alignment and domain information
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
4g38_A570 Mutational Analysis Of Sulfite Reductase Hemoprotei 2e-84
4g39_A570 Mutational Analysis Of Sulfite Reductase Hemoprotei 6e-84
1aop_A497 Sulfite Reductase Structure At 1.6 Angstrom Resolut 1e-78
4htr_A507 N149w Variant Of Sirhp Bound To Sulfite Length = 50 2e-78
1zj8_A566 Structure Of Mycobacterium Tuberculosis Nira Protei 3e-25
3b0h_A588 Assimilatory Nitrite Reductase (Nii4) From Tobbaco 1e-20
3vlx_A584 Assimilatory Nitrite Reductase (Nii3) - N226k Mutan 6e-20
3b0l_A584 M175g Mutant Of Assimilatory Nitrite Reductase (Nii 2e-19
3b0n_A584 Q448k Mutant Of Assimilatory Nitrite Reductase (Nii 3e-19
3b0g_A591 Assimilatory Nitrite Reductase (Nii3) From Tobbaco 3e-19
3b0j_A584 M175e Mutant Of Assimilatory Nitrite Reductase (Nii 4e-19
3b0m_A584 M175k Mutant Of Assimilatory Nitrite Reductase (Nii 4e-19
2akj_A608 Structure Of Spinach Nitrite Reductase Length = 608 2e-18
>pdb|4G38|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein Reveals The Mechanism For Coordinated Electron And Proton Transfer Length = 570 Back     alignment and structure 
Iteration: 1

 Score =  310 bits (793), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 293/570 (51%), Gaps = 54/570 (9%)
Query: 77  IKEQSNFIRYPLNEELLTDAPNVNESATQ--------LIKFHGSYQQYNRDERGAKS--- 125
           +K +SN++R  + E+L       N+  T         LI+FHG YQQ +RD R  ++   
Sbjct: 21  MKHESNYLRGTIAEDL-------NDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQK 73
Query: 126 ----YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTV 180
               ++ +LR + P G ++ + +  +D  A +  I G            HG+LKK++K V
Sbjct: 74  LEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV 133
Query: 181 MRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMW 239
              ++ S+G   L    D+NRNVL    P   + +  A + A+ I+  L P++  Y ++W
Sbjct: 134 -HQMLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIW 192
Query: 240 VDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILT 299
           +D E++ T +                     EPI G  +LPRKFK  V +P  N +D+  
Sbjct: 193 LDQEKVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHA 232
Query: 300 NDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVV 359
           ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V 
Sbjct: 233 NDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVT 291
Query: 360 TQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQ 419
           TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW + 
Sbjct: 292 TQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKG 351
Query: 420 GDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPI 475
            D      L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K  I
Sbjct: 352 IDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKI 411
Query: 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535
                ++GL+    V P    +MAC S P CPLA+ EAER +P  +  I  +  K G+  
Sbjct: 412 EKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS- 468
Query: 536 NESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELE 595
           +E +V+RVTGCPNGC R  +AE+GLVG  P  Y + LGG    T + R +   +   E+ 
Sbjct: 469 DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEIL 528
Query: 596 KVFEPLFYYWKQKRQTKDESFGDFTNRMGF 625
              + L   W ++R+   E FGDFT R G 
Sbjct: 529 ASLDELIGRWAKEREA-GEGFGDFTVRAGI 557
>pdb|4G39|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein Reveals The Mechanism For Coordinated Electron And Proton Transfer Length = 570 Back     alignment and structure
>pdb|1AOP|A Chain A, Sulfite Reductase Structure At 1.6 Angstrom Resolution Length = 497 Back     alignment and structure
>pdb|4HTR|A Chain A, N149w Variant Of Sirhp Bound To Sulfite Length = 507 Back     alignment and structure
>pdb|1ZJ8|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein Length = 566 Back     alignment and structure
>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root Length = 588 Back     alignment and structure
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - Ligand Free Form From Tobacco Leaf Length = 584 Back     alignment and structure
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 584 Back     alignment and structure
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 584 Back     alignment and structure
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 591 Back     alignment and structure
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 584 Back     alignment and structure
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 584 Back     alignment and structure
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
1aop_A497 Sirhp, sulfite reductase hemoprotein; oxidoreducta 0.0
1zj8_A566 Probable ferredoxin-dependent nitrite reductase N; 0.0
2akj_A608 Ferredoxin--nitrite reductase, chloroplast; X-RAY 1e-156
3b0g_A591 NII3, nitrite reductase; siroheme, Fe4S4 binding p 1e-146
3b0g_A 591 NII3, nitrite reductase; siroheme, Fe4S4 binding p 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A* Length = 497 Back     alignment and structure
 Score =  589 bits (1521), Expect = 0.0
 Identities = 177/520 (34%), Positives = 270/520 (51%), Gaps = 32/520 (6%)

Query: 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDLKTVMR 182
             ++ +LR + P G ++ + +  +D  A +    G++RLT RQTFQ HG+LKK++K V +
Sbjct: 3   PRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQ 62

Query: 183 SIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDG 242
            +       L    D+NRNVL    P   + +  A + A+ I+  L P++  Y ++W+D 
Sbjct: 63  MLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQ 122

Query: 243 EQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI 302
           E++ T +                     EPI G  +LPRKFK  V +P  N +D+  ND+
Sbjct: 123 EKVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDM 162

Query: 303 GVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQR 362
             V +++      GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR
Sbjct: 163 NFVAIAENGKLV-GFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQR 221

Query: 363 ENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDG 422
           + G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D 
Sbjct: 222 DWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDD 281

Query: 423 GLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTA 478
                L ++NGRI       +K  L EI + +  + RIT NQN+I+  + ++ K  I   
Sbjct: 282 NWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKI 341

Query: 479 LAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNES 538
             ++GL+    V P    +MAC S P CPLA+ EAER +P  +  I  +  K G+  +E 
Sbjct: 342 AKESGLMNA--VTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-DEH 398

Query: 539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVF 598
           +V+RVTGCPNGC R  +AE+GLVG  P  Y + LGG    T + R +   +   E+    
Sbjct: 399 IVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASL 458

Query: 599 EPLFYYWKQKRQTKDESFGDFTNRMGFEK--LQELVEKWE 636
           + L   W ++R+   E FGDFT R G  +  L    + W+
Sbjct: 459 DELIGRWAKERE-AGEGFGDFTVRAGIIRPVLDPARDLWD 497
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A* Length = 566 Back     alignment and structure
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 Length = 608 Back     alignment and structure
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A* Length = 591 Back     alignment and structure
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A* Length = 591 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 691
d1aopa3197 d.134.1.1 (A:149-345) Sulfite reductase hemoprotei 2e-61
d1aopa4145 d.134.1.1 (A:426-570) Sulfite reductase hemoprotei 6e-37
d2akja4171 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductas 2e-29
d2akja4171 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductas 2e-05
d1zj8a4165 d.134.1.1 (A:162-326) Sulfite reductase NirA {Myco 2e-26
d1zj8a3149 d.134.1.1 (A:407-555) Sulfite reductase NirA {Myco 3e-26
d1zj8a3149 d.134.1.1 (A:407-555) Sulfite reductase NirA {Myco 4e-05
d1zj8a2152 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycob 3e-25
d1zj8a2152 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycob 0.003
d1aopa280 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 2e-24
d2akja2153 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase 9e-19
d2akja2153 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase 8e-06
d1zj8a180 d.58.36.1 (A:327-406) Sulfite reductase NirA {Myco 2e-17
d1zj8a180 d.58.36.1 (A:327-406) Sulfite reductase NirA {Myco 2e-12
d2akja3126 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductas 9e-16
d2akja3126 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductas 6e-06
d1aopa165 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 1e-14
d1aopa165 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 0.001
d2akja185 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductas 4e-14
d2akja185 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductas 9e-14
d3c7ba3185 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulf 6e-10
d2v4jb3177 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulf 6e-10
d2v4jb3177 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulf 4e-07
d3c7bb3179 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulf 4e-08
d3c7bb3179 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulf 7e-08
d2v4ja3189 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulf 2e-06
d2v4jb2134 d.58.36.2 (B:2-135) Dissimilatory sulfite reductas 3e-04
d3c7bb2119 d.58.36.2 (B:4-122) Dissimilatory sulfite reductas 0.002
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
species: Escherichia coli [TaxId: 562]

 Score =  202 bits (514), Expect = 2e-61
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 24/216 (11%)

Query: 197 DLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKA 256
           D+NRNVL    P   + +  A + A+ I+  L P++  Y ++W+D E++ T +       
Sbjct: 2   DMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDE------ 55

Query: 257 RNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQG 316
                         EPI G  +LPRKFK  V +P  N +D+  ND+  V +++       
Sbjct: 56  --------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVG- 100

Query: 317 FNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMK 376
           FNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ K
Sbjct: 101 FNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTK 160

Query: 377 YLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKS 412
           Y +   G+E F++ VE+  G KFEP R    +EF  
Sbjct: 161 YTLERVGVETFKAEVERRAGIKFEPIR---PYEFTG 193
>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Length = 145 Back     information, alignment and structure
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 171 Back     information, alignment and structure
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 171 Back     information, alignment and structure
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165 Back     information, alignment and structure
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 149 Back     information, alignment and structure
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 149 Back     information, alignment and structure
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 152 Back     information, alignment and structure
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 152 Back     information, alignment and structure
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Length = 80 Back     information, alignment and structure
>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 153 Back     information, alignment and structure
>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 153 Back     information, alignment and structure
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 80 Back     information, alignment and structure
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 80 Back     information, alignment and structure
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 126 Back     information, alignment and structure
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 126 Back     information, alignment and structure
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Length = 65 Back     information, alignment and structure
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Length = 65 Back     information, alignment and structure
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 85 Back     information, alignment and structure
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 85 Back     information, alignment and structure
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]} Length = 185 Back     information, alignment and structure
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Length = 177 Back     information, alignment and structure
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Length = 177 Back     information, alignment and structure
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Length = 179 Back     information, alignment and structure
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Length = 179 Back     information, alignment and structure
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]} Length = 189 Back     information, alignment and structure
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Length = 134 Back     information, alignment and structure
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query691
d1aopa3197 Sulfite reductase hemoprotein (SiRHP), domains 2 a 100.0
d2akja4171 Ferredoxin--nitrite reductase, NIR {Spinach (Spina 100.0
d1zj8a4165 Sulfite reductase NirA {Mycobacterium tuberculosis 100.0
d1zj8a2152 Sulfite reductase NirA {Mycobacterium tuberculosis 100.0
d1aopa4145 Sulfite reductase hemoprotein (SiRHP), domains 2 a 99.97
d1zj8a3149 Sulfite reductase NirA {Mycobacterium tuberculosis 99.97
d2akja2153 Ferredoxin--nitrite reductase, NIR {Spinach (Spina 99.96
d2v4jb3177 Dissimilatory sulfite reductase subunit beta, DsrB 99.95
d3c7bb3179 Dissimilatory sulfite reductase subunit beta, DsrB 99.94
d2v4ja3189 Dissimilatory sulfite reductase subunit alpha, Dsr 99.93
d1zj8a4165 Sulfite reductase NirA {Mycobacterium tuberculosis 99.93
d3c7ba3185 Dissimilatory sulfite reductase subunit alpha, Dsr 99.93
d2akja4171 Ferredoxin--nitrite reductase, NIR {Spinach (Spina 99.93
d2akja3126 Ferredoxin--nitrite reductase, NIR {Spinach (Spina 99.91
d1zj8a3149 Sulfite reductase NirA {Mycobacterium tuberculosis 99.9
d2v4jb3177 Dissimilatory sulfite reductase subunit beta, DsrB 99.9
d1aopa3197 Sulfite reductase hemoprotein (SiRHP), domains 2 a 99.89
d2v4ja3189 Dissimilatory sulfite reductase subunit alpha, Dsr 99.88
d3c7bb3179 Dissimilatory sulfite reductase subunit beta, DsrB 99.86
d3c7ba3185 Dissimilatory sulfite reductase subunit alpha, Dsr 99.84
d1aopa4145 Sulfite reductase hemoprotein (SiRHP), domains 2 a 99.81
d2akja3126 Ferredoxin--nitrite reductase, NIR {Spinach (Spina 99.79
d1zj8a180 Sulfite reductase NirA {Mycobacterium tuberculosis 99.72
d1aopa165 Sulfite reductase, domains 1 and 3 {Escherichia co 99.71
d2akja185 Ferredoxin--nitrite reductase, NIR {Spinach (Spina 99.71
d1zj8a180 Sulfite reductase NirA {Mycobacterium tuberculosis 99.65
d1aopa280 Sulfite reductase, domains 1 and 3 {Escherichia co 99.64
d1zj8a2152 Sulfite reductase NirA {Mycobacterium tuberculosis 99.59
d2akja185 Ferredoxin--nitrite reductase, NIR {Spinach (Spina 99.59
d2akja2153 Ferredoxin--nitrite reductase, NIR {Spinach (Spina 99.52
d2v4jb2134 Dissimilatory sulfite reductase subunit beta, DsrB 99.47
d3c7bb2119 Dissimilatory sulfite reductase subunit beta, DsrB 99.45
d1aopa165 Sulfite reductase, domains 1 and 3 {Escherichia co 99.33
d2v4jb2134 Dissimilatory sulfite reductase subunit beta, DsrB 99.17
d1aopa280 Sulfite reductase, domains 1 and 3 {Escherichia co 99.11
d3c7bb2119 Dissimilatory sulfite reductase subunit beta, DsrB 98.88
d3c7ba2166 Dissimilatory sulfite reductase subunit alpha, Dsr 97.9
d2v4ja2166 Dissimilatory sulfite reductase subunit alpha, Dsr 97.78
d2v4ja2166 Dissimilatory sulfite reductase subunit alpha, Dsr 95.38
d3c7ba2166 Dissimilatory sulfite reductase subunit alpha, Dsr 95.28
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=362.56  Aligned_cols=190  Identities=39%  Similarity=0.702  Sum_probs=178.9

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89886400489988724445699999999987189766532111343222368990234103689999999999998767
Q 005564          196 GDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYG  275 (691)
Q Consensus       196 Gd~~RNI~acp~~~~~~~~~d~~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg  275 (691)
                      .|++|||||||+|++..++.|++++|++|+++|+|++++|+|||+|++++.+.+                    .||+|+
T Consensus         1 ~Dv~RNV~~~~~~~~~~~~~d~~~~A~~i~~~~~~~~~~y~ei~~~~~~~~~~~--------------------~~p~Y~   60 (197)
T d1aopa3           1 NDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILG   60 (197)
T ss_dssp             CCCBCCCEECSSCSSTTHHHHHHHHHHHHHHHTCC---------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC--------------------CCCCCC
T ss_conf             998865427898567525799999999999985556406999985366112566--------------------684323


Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88899832899966999984463387899999547996105999982788876776665674443357899778999999
Q 005564          276 TQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVK  355 (691)
Q Consensus       276 ~~~LPrKfKi~isgc~~~c~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~lg~v~~eev~~~~~  355 (691)
                      .++|||||||+||||++||+++++|||||+++.++ |+..||+|++|||+|++++...++|++++.++|+++|+++++++
T Consensus        61 ~~~LPRKFKIavsgc~~nc~~~~~nDiG~ia~~~~-g~~~Gf~V~vGGglg~~~~~~~~~~~~~~~~~~v~~e~vl~v~~  139 (197)
T d1aopa3          61 QTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAE  139 (197)
T ss_dssp             -CCCSSCBCEEEECTTBCTTCGGGSSEEEEEEEET-TEEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCEEEEECCEEEEEEEEC-CCCEEEEEEECCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHH
T ss_conf             45688444898864862302123141489999818-96058999970236315788886430013216589999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             999999993899841024599999951314799999998398788888898
Q 005564          356 AIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLP  406 (691)
Q Consensus       356 aii~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~v~~~~g~~l~~~~~~~  406 (691)
                      ||+.+|++||+|+||+++||||+|++||+++|++++++++|+++++.+|..
T Consensus       140 aI~~v~rd~G~R~nR~kaRlk~li~~~G~e~Fr~~Ve~~~g~~l~~~~p~~  190 (197)
T d1aopa3         140 AVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYE  190 (197)
T ss_dssp             HHHHHHHHHSCSSCSTTCSHHHHHHHHCHHHHHHHHHHHHTCCCBCCCCCC
T ss_pred             HHHHHHHHHCCHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999999986787443033300427754899999999998497666689854
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure