Citrus Sinensis ID: 005732
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 680 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIT7 | 697 | Pentatricopeptide repeat- | yes | no | 0.847 | 0.826 | 0.327 | 1e-106 | |
| Q9FWA6 | 903 | Pentatricopeptide repeat- | no | no | 0.945 | 0.712 | 0.314 | 1e-101 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.9 | 0.575 | 0.309 | 7e-99 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.870 | 0.717 | 0.297 | 7e-98 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.898 | 0.732 | 0.330 | 4e-96 | |
| Q9SJK9 | 625 | Pentatricopeptide repeat- | no | no | 0.879 | 0.956 | 0.309 | 7e-96 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.908 | 0.786 | 0.315 | 1e-94 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.923 | 0.804 | 0.317 | 3e-94 | |
| Q9M9E2 | 866 | Pentatricopeptide repeat- | no | no | 0.9 | 0.706 | 0.310 | 4e-92 | |
| Q56XI1 | 705 | Pentatricopeptide repeat- | no | no | 0.835 | 0.805 | 0.318 | 6e-92 |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/663 (32%), Positives = 350/663 (52%), Gaps = 87/663 (13%)
Query: 18 IVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHR 77
I + N +T + G L A +LF MP R +WN+M+ G+++ + +E+L + MH+
Sbjct: 86 IYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHK 145
Query: 78 SNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEE 137
LNE +F+++LS C+ LN + G Q+H L+ KS + ++GS L+ Y+ C + +
Sbjct: 146 EGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVND 205
Query: 138 AKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDG 197
A+RVFDE+ + N + W+ ++ + Q +A DVF M + V
Sbjct: 206 AQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRV---------------- 249
Query: 198 CEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGG 257
P+E T SVI ACA L A G+ VHG ++K
Sbjct: 250 -----------------EPDEVTLASVISACASLSAIKVGQEVHGRVVK----------- 281
Query: 258 ALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSIS 317
D+L N + SN+ ++ RI++A IF+ + N I+
Sbjct: 282 ------------------NDKLRNDII-LSNAFVDMYAKCSRIKEARFIFDSMPIRNVIA 322
Query: 318 YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNN 377
SMI GYA+ ++ +F KM R+++S WN++I+GY QN
Sbjct: 323 ETSMISGYAMAASTKAARLMFTKMAERNVVS-----------------WNALIAGYTQNG 365
Query: 378 LHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF------ES 431
+E+AL L+ +++ ++ T +F+ + AC+ L L G H H++K F E
Sbjct: 366 ENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEED 425
Query: 432 NVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIML 491
+++VG SL+DMY +CG + + F + + +W A++ G++ +G G+EA+ LF ML
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML 485
Query: 492 EQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM-KSYGVVPTLEHYTCVVDLLGRSGHL 550
E P+ T +GVLSAC AG V EG F SM + +GV P +HYTC+VDLLGR+G L
Sbjct: 486 ESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFL 545
Query: 551 HEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610
EA+ I++MP++ D+V+WG+LL+AC N+ +G+ A+K+ ++ YV+LSN+Y
Sbjct: 546 EEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMY 605
Query: 611 AVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLT 670
A LGKW M++RK + V K PGCSWI++ H F V+D+++P I++ L+ L
Sbjct: 606 AELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILI 665
Query: 671 ANL 673
A +
Sbjct: 666 AEM 668
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 241/766 (31%), Positives = 368/766 (48%), Gaps = 123/766 (16%)
Query: 18 IVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHR 77
+VS NK I ++ + A + F+ MP+R VVSWN+ML GY + + +S+ + M R
Sbjct: 114 VVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGR 173
Query: 78 SNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEE 137
++ + TF+ IL VC+ L G QIH +V++ G + S LL YA E
Sbjct: 174 EGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVE 233
Query: 138 AKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPK------------------- 178
+ RVF + E N + WS ++ G VQ NL+S A F +M K
Sbjct: 234 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 293
Query: 179 --------------------KDVVVWTKLISGYAKSVDGCEKALKLF----RWMRESGEN 214
D +V T + YAK D + A LF R+S
Sbjct: 294 LSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK-CDNMQDAQILFDNSENLNRQSYNA 352
Query: 215 MPNEYT---------------------FD-----SVIRACARLGAFCEGKVVHGLLIKCG 248
M Y+ FD V RACA + EG ++GL IK
Sbjct: 353 MITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSS 412
Query: 249 FEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLI-----NG--------LI 295
D + A I+ Y C+A A RV+D + + N++I NG +
Sbjct: 413 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFV 472
Query: 296 SM--GRIEDAELIFNRLTEA---NSISYN--------------------SMIKGYAVYGQ 330
SM RIE E F + +A S+ Y S+I Y+ G
Sbjct: 473 SMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGM 532
Query: 331 VDDSKRLFEKMPHRSIISLNTMISVIPEMERNP--------VTWNSMISGYVQNNLHEKA 382
+++++++ + R+ +S + E+E+ V+WNS+ISGYV E A
Sbjct: 533 IEEAEKIHSRFFQRANVS-----GTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDA 587
Query: 383 LQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDM 442
L+ M ++ I + T++ + C+ L S G+ +HA ++K +S+VY+ ++LVDM
Sbjct: 588 QMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDM 647
Query: 443 YSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATF 502
YS+CG ++D++ F + W A++ GY+HHG G EA+ LFE M+ ++I PN TF
Sbjct: 648 YSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 707
Query: 503 VGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP 561
+ +L AC GL+++G++ F MK YG+ P L HY+ +VD+LG+SG + A E I++MP
Sbjct: 708 ISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 767
Query: 562 IELDAVVWGALLSACWFWM-NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKM 620
E D V+W LL C N+EV E A + LD + SAY +LSN+YA G W K
Sbjct: 768 FEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVS 827
Query: 621 DIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATL 666
D+R+ + ++KK+PGCSW+EL +H F V D+ +P IY L
Sbjct: 828 DLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEEL 873
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 207/668 (30%), Positives = 354/668 (52%), Gaps = 56/668 (8%)
Query: 32 GQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTIL 91
G L++A ++F M R V++NT++ G S+ ++++ L MH ++ + T ++++
Sbjct: 337 GNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLV 396
Query: 92 SVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNEL 151
C+ +L G+Q+H K G+ + LL YA C +IE A
Sbjct: 397 VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETA------------- 443
Query: 152 LWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRES 211
D F++ ++VV+W ++ Y +D + ++FR M+
Sbjct: 444 ------------------LDYFLETEVENVVLWNVMLVAYGL-LDDLRNSFRIFRQMQIE 484
Query: 212 GENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDG 271
E +PN+YT+ S+++ C RLG G+ +H +IK F+ + + LI+ Y D
Sbjct: 485 -EIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDT 543
Query: 272 AMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE----------ANSIS---- 317
A + R + + ++I G + A F ++ + N++S
Sbjct: 544 AWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAG 603
Query: 318 YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPE----MER----NPVTWNSM 369
++ +G ++ Q S + ++++L + I E E+ + + WN++
Sbjct: 604 LQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNAL 663
Query: 370 ISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF 429
+SG+ Q+ +E+AL++++ M + ID TF A S +++QG+ +HA + KT +
Sbjct: 664 VSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGY 723
Query: 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEI 489
+S V +L+ MY++CGSI+DA+ F +S+ N +W A++N YS HG GSEA+ F+
Sbjct: 724 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQ 783
Query: 490 MLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS-YGVVPTLEHYTCVVDLLGRSG 548
M+ ++ PN T VGVLSAC GLV++G+ F SM S YG+ P EHY CVVD+L R+G
Sbjct: 784 MIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 843
Query: 549 HLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608
L A+EFI++MPI+ DA+VW LLSAC NME+GE AA + L+ + + YV+LSN
Sbjct: 844 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSN 903
Query: 609 IYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEH 668
+YAV KW + R+++ VKK+PG SWIE+ + +H+F V D+N+P + I+ +
Sbjct: 904 LYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQD 963
Query: 669 LTANLNSV 676
LT + +
Sbjct: 964 LTKRASEI 971
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 212/713 (29%), Positives = 352/713 (49%), Gaps = 121/713 (16%)
Query: 19 VSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRS 78
VSTN I+ + G + +AR+LFD MP RTVV+W ++ Y++ + FDE+ L M RS
Sbjct: 80 VSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRS 139
Query: 79 N--VKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIE 136
+ + TF+T+L C Q+H +K G++ F+
Sbjct: 140 SSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFL--------------- 184
Query: 137 EAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVD 196
+ +++L Y + + A +F ++P+KD V + LI+GY K D
Sbjct: 185 --------------TVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK--D 228
Query: 197 GC-EKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESI 255
G +++ LF MR+SG + P+++TF V++A L F G+ +H L + GF D S+
Sbjct: 229 GLYTESIHLFLKMRQSG-HQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASV 287
Query: 256 GGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANS 315
G +++FY + R+ + ++F+ + E +
Sbjct: 288 GNQILDFYSKHD-------------------------------RVLETRMLFDEMPELDF 316
Query: 316 ISYNSMIKGYAVYGQVDDSKRLFEKMP----HRSIISLNTMISVIPEM------------ 359
+SYN +I Y+ Q + S F +M R TM+S+ +
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ 376
Query: 360 -------------------------------------ERNPVTWNSMISGYVQNNLHEKA 382
+R V+W ++ISGYVQ LH
Sbjct: 377 ALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG 436
Query: 383 LQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDM 442
L+L+ MR + +STF+ + A + SL G+ LHA ++++ NV+ G+ LVDM
Sbjct: 437 LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDM 496
Query: 443 YSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATF 502
Y++CGSI DA F + N +W AL++ ++ +G G A+ F M+E + P++ +
Sbjct: 497 YAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSI 556
Query: 503 VGVLSACVRAGLVNEGMKIFRSMKS-YGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP 561
+GVL+AC G V +G + F++M YG+ P +HY C++DLLGR+G EAE+ + +MP
Sbjct: 557 LGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMP 616
Query: 562 IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDK-KPISAYVILSNIYAVLGKWGKKM 620
E D ++W ++L+AC N + ERAA+K+F ++K + +AYV +SNIYA G+W K
Sbjct: 617 FEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVR 676
Query: 621 DIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANL 673
D++K + +KK P SW+E+N ++H FS D+ +PN + I + LTA +
Sbjct: 677 DVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEI 729
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 223/675 (33%), Positives = 351/675 (52%), Gaps = 64/675 (9%)
Query: 30 RNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFST 89
++G + AR +FD +P ++ V+W TM+ G K + SL L + NV + ST
Sbjct: 195 KDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILST 254
Query: 90 ILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDN 149
+LS C+ L L GKQIH +L+ G E +
Sbjct: 255 VLSACSILPFLEGGKQIHAHILRYGLEM-------------------------------D 283
Query: 150 ELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMR 209
L ++++ YV+C + A +F MP K+++ WT L+SGY ++ E A++LF M
Sbjct: 284 ASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKE-AMELFTSMS 342
Query: 210 ESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAF 269
+ G P+ Y S++ +CA L A G VH IK D + +LI+ Y C+
Sbjct: 343 KFGLK-PDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCL 401
Query: 270 DGAMRVYDRLENPCLNASNSLINGLISMG---RIEDAELIFN----RLTEANSISYNSMI 322
A +V+D + N++I G +G + +A IF RL + +++ S++
Sbjct: 402 TDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLL 461
Query: 323 KGYAVYGQVDDSKR----LFEKMPHRSIISLNTMISV-------------IPEME-RNPV 364
+ A + SK+ +F+ + I + + +I V EM+ ++ V
Sbjct: 462 RASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLV 521
Query: 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS---TFSVLFHACSCLGSLQQGQLLH 421
WNSM +GYVQ + +E+AL L++ +L + R R TF+ + A L S+Q GQ H
Sbjct: 522 IWNSMFAGYVQQSENEEALNLFL---ELQLSRERPDEFTFANMVTAAGNLASVQLGQEFH 578
Query: 422 AHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGS 481
L+K E N Y+ +L+DMY++CGS DA +F S +S +V W ++++ Y++HG G
Sbjct: 579 CQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGK 638
Query: 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVV 541
+A+ + E M+ + I PN TFVGVLSAC AGLV +G+K F M +G+ P EHY C+V
Sbjct: 639 KALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMV 698
Query: 542 DLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601
LLGR+G L++A E I+ MP + A+VW +LLS C N+E+ E AA+ D K
Sbjct: 699 SLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSG 758
Query: 602 AYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNV 661
++ +LSNIYA G W + +R+R+ V K+PG SWI +N VH F +D+++ N
Sbjct: 759 SFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQ 818
Query: 662 IYATLEHLTANLNSV 676
IY L+ L + V
Sbjct: 819 IYEVLDDLLVQIRGV 833
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 208/671 (30%), Positives = 346/671 (51%), Gaps = 73/671 (10%)
Query: 16 TLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTM 75
+++V I ++G++ +AR +FD MP V+WNTML YS+ E+++L + +
Sbjct: 2 SVLVRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQL 61
Query: 76 HRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEI 135
S+ K ++ +F+ ILS CA L ++ G++I LV++SG+ V + L+ Y C +
Sbjct: 62 RFSDAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDT 121
Query: 136 EEAKRVFDELHED--NELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAK 193
A +VF ++ D NE+ W +L Y+ A DVF++MPK+ W +ISG+A
Sbjct: 122 LSANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAH 181
Query: 194 SVDGCEKALKLFRWMRESGENMPNEYTFDSVIRAC-ARLGAFCEGKVVHGLLIKCGFEFD 252
E L LF+ M ES E P+ YTF S++ AC A G++VH +++K G+
Sbjct: 182 -CGKLESCLSLFKEMLES-EFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSA 239
Query: 253 ESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE 312
+++ FY + D AMR + +E LT+
Sbjct: 240 VEAKNSVLSFYTKLGSRDDAMRELESIE----------------------------VLTQ 271
Query: 313 ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISG 372
+S+NS+I G+ + + +F P E+N VTW +MI+G
Sbjct: 272 ---VSWNSIIDACMKIGETEKALEVFHLAP-----------------EKNIVTWTTMITG 311
Query: 373 YVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESN 432
Y +N E+AL+ ++ M K +D + + HACS L L G+++H L+ F+
Sbjct: 312 YGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGY 371
Query: 433 VYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLE 492
YVG +LV++Y++CG I +A +F I++ ++ +W ++ + HGL +A+ L++ M+
Sbjct: 372 AYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIA 431
Query: 493 QDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM-KSYGVVPTLEHYTCVVDLLGRSGHLH 551
I P+ TF+G+L+ C +GLV EG IF SM K Y + ++H TC++D+ GR GHL
Sbjct: 432 SGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHLA 491
Query: 552 EAEEFIKDMPIELDAVV--------WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603
EA KD+ ++V W LL AC + E+G ++ + + ++
Sbjct: 492 EA----KDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVSKVLKIAEPSEEMSF 547
Query: 604 VILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIY 663
V+LSN+Y G+W + D+R+ + +KK PGCSWIE+ ++V F V D ++P
Sbjct: 548 VLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVGDSSHPR----- 602
Query: 664 ATLEHLTANLN 674
LE L+ LN
Sbjct: 603 --LEELSETLN 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 212/671 (31%), Positives = 343/671 (51%), Gaps = 53/671 (7%)
Query: 4 YATQSQTLMTQETL--IVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSK 61
YA ++ L + L S N ++ + G + + FDQ+P R VSW TM+ GY
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123
Query: 62 WAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFV 121
++ +++ ++ M + ++ + T + +L+ A + GK++H ++K G V
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183
Query: 122 GSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDV 181
+ LL YA C + AK VFD + + W+ M+ ++Q M A F +M ++D+
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243
Query: 182 VVWTKLISGYAKSVDGCE-KALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVV 240
V W +ISG+ + G + +AL +F M P+ +T SV+ ACA L C GK +
Sbjct: 244 VTWNSMISGFNQR--GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQI 301
Query: 241 HGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRI 300
H ++ GF+ + ALI Y C + A R+ ++ L +I
Sbjct: 302 HSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL--------------KI 347
Query: 301 EDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEME 360
E + +++ GY G ++ +K +F +SL +
Sbjct: 348 E---------------GFTALLDGYIKLGDMNQAKNIF--------VSLK---------D 375
Query: 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLL 420
R+ V W +MI GY Q+ + +A+ L+ +M T + + S L SL G+ +
Sbjct: 376 RDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQI 435
Query: 421 HAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS-SPNVAAWTALMNGYSHHGL 479
H VK+ +V V +L+ MY++ G+I A +F I + +WT+++ + HG
Sbjct: 436 HGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495
Query: 480 GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYG-VVPTLEHYT 538
EA+ LFE ML + + P+ T+VGV SAC AGLVN+G + F MK ++PTL HY
Sbjct: 496 AEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYA 555
Query: 539 CVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598
C+VDL GR+G L EA+EFI+ MPIE D V WG+LLSAC N+++G+ AA+++ L+ +
Sbjct: 556 CMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPE 615
Query: 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPN 658
AY L+N+Y+ GKW + IRK + VKK+ G SWIE+ +VH F VED +P
Sbjct: 616 NSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPE 675
Query: 659 CNVIYATLEHL 669
N IY T++ +
Sbjct: 676 KNEIYMTMKKI 686
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (888), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 224/706 (31%), Positives = 362/706 (51%), Gaps = 78/706 (11%)
Query: 5 ATQSQTLMTQ--------ETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTML 56
ATQ+Q +Q ++ I N AI+ R G+ A +F +MP + VS+N M+
Sbjct: 43 ATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMI 102
Query: 57 CGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYE 116
GY + +F+ + L M ++ N +I G + L E
Sbjct: 103 SGYLRNGEFELARKLFDEMPERDL--------------VSWNVMIKG-YVRNRNLGKARE 147
Query: 117 CFEFVG-------SGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDA 169
FE + + +L YA +++A+ VFD + E N++ W+ +L YVQ + M +A
Sbjct: 148 LFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEA 207
Query: 170 FDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACA 229
+F +V W L+ G+ K E A + F M N+ + +++++I A
Sbjct: 208 CMLFKSRENWALVSWNCLLGGFVKKKKIVE-ARQFFDSM-----NVRDVVSWNTIITGYA 261
Query: 230 RLGAFCEGKVVHGLLIKCGFEFDES------IGGALIEFYCGCEAFDGAMRVYDRLENPC 283
+ G E + + FDES A++ Y + A ++D++
Sbjct: 262 QSGKIDEARQL----------FDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERN 311
Query: 284 LNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPH 343
+ N+++ G + R+E A+ +F+ + N ++N+MI GYA G++ ++K LF+KMP
Sbjct: 312 EVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP- 370
Query: 344 RSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSV 403
+R+PV+W +MI+GY Q+ +AL+L++ M + RS+FS
Sbjct: 371 ----------------KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414
Query: 404 LFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPN 463
C+ + +L+ G+ LH LVK +E+ +VG +L+ MY +CGSI +A F ++ +
Sbjct: 415 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 474
Query: 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFR 523
+ +W ++ GYS HG G A+ FE M + + P+ AT V VLSAC GLV++G + F
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534
Query: 524 SM-KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNM 582
+M + YGV+P +HY C+VDLLGR+G L +A +K+MP E DA +WG LL A N
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594
Query: 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIEL 642
E+ E AA K+F ++ + YV+LSN+YA G+WG +R R+ VKK PG SWIE+
Sbjct: 595 ELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654
Query: 643 NSRVHAFSVEDRNNPNCNVIYATLEHLTANLN--------SVVLFD 680
++ H FSV D +P + I+A LE L + SVVL D
Sbjct: 655 QNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHD 700
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 209/674 (31%), Positives = 348/674 (51%), Gaps = 62/674 (9%)
Query: 30 RNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTM-HRSNVKLNETTFS 88
R G LV A +F +M R + SWN ++ GY+K FDE++ L M VK + TF
Sbjct: 141 RFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFP 200
Query: 89 TILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED 148
+L C + L GK++H V++ GYE V + L+ Y C +++ A+ +FD
Sbjct: 201 CVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD----- 255
Query: 149 NELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWM 208
+MP++D++ W +ISGY ++ C + L+LF M
Sbjct: 256 --------------------------RMPRRDIISWNAMISGYFEN-GMCHEGLELFFAM 288
Query: 209 RESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEA 268
R + P+ T SVI AC LG G+ +H +I GF D S+ +L + Y +
Sbjct: 289 RGLSVD-PDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGS 347
Query: 269 FDGAMRVYDRLENPCLNASNSLING----LISMGRIEDAELIFNRLTEANSISYNSMIKG 324
+ A +++ R+E + + ++I+G + I+ ++ + + I+ +++
Sbjct: 348 WREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSA 407
Query: 325 YAVYGQVDDSKRLFEKMPHRSIISL----NTMISV----------------IPEMERNPV 364
A G +D L + +IS N +I++ IP +N +
Sbjct: 408 CATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPR--KNVI 465
Query: 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHL 424
+W S+I+G NN +AL +++ K+ + T + AC+ +G+L G+ +HAH+
Sbjct: 466 SWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHV 524
Query: 425 VKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAV 484
++T + ++ +L+DMY RCG +N A + F+S +V +W L+ GYS G GS V
Sbjct: 525 LRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVV 583
Query: 485 LLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544
LF+ M++ + P+ TF+ +L C ++ +V +G+ F M+ YGV P L+HY CVVDLL
Sbjct: 584 ELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLL 643
Query: 545 GRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604
GR+G L EA +FI+ MP+ D VWGALL+AC +++GE +AQ +F LDKK + Y+
Sbjct: 644 GRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYI 703
Query: 605 ILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYA 664
+L N+YA GKW + +R+ + + D GCSW+E+ +VHAF +D+ +P I
Sbjct: 704 LLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINT 763
Query: 665 TLEHLTANLNSVVL 678
LE ++ V L
Sbjct: 764 VLEGFYEKMSEVGL 777
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 213/669 (31%), Positives = 341/669 (50%), Gaps = 101/669 (15%)
Query: 20 STNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSN 79
+ N IT R G++ AR LFD +++ SWN+M+ GY + M R
Sbjct: 19 TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGY-----------FANLMPRDA 67
Query: 80 VKL-NETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEA 138
KL +E I+S N L+ G +K+G EI+EA
Sbjct: 68 RKLFDEMPDRNIIS----WNGLVSG------YMKNG-------------------EIDEA 98
Query: 139 KRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDG- 197
++VFD + E N + W+ ++ GYV + A +F KMP+K+ V WT ++ G+ + DG
Sbjct: 99 RKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQ--DGR 156
Query: 198 CEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGG 257
+ A KL+ E +P++ D++ R ++HGL
Sbjct: 157 IDDACKLY-------EMIPDK---DNIART----------SMIHGL-------------- 182
Query: 258 ALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSIS 317
C D A ++D + + +++ G R++DA IF+ + E +S
Sbjct: 183 ------CKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVS 236
Query: 318 YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEM--------------ERNP 363
+ SM+ GY G+++D++ LFE MP + +I+ N MIS + + ERN
Sbjct: 237 WTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERND 296
Query: 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAH 423
+W ++I + +N +AL L++ M+K + T T + C+ L SL G+ +HA
Sbjct: 297 ASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQ 356
Query: 424 LVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEA 483
LV+ F+ +VYV + L+ MY +CG + ++ F S ++ W ++++GY+ HGLG EA
Sbjct: 357 LVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEA 416
Query: 484 VLLF-EIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS-YGVVPTLEHYTCVV 541
+ +F E+ L PN TFV LSAC AG+V EG+KI+ SM+S +GV P HY C+V
Sbjct: 417 LKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMV 476
Query: 542 DLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601
D+LGR+G +EA E I M +E DA VWG+LL AC ++V E A+K+ ++ +
Sbjct: 477 DMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSG 536
Query: 602 AYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRN-NPNCN 660
Y++LSN+YA G+W ++RK + V+K PGCSW E+ ++VHAF+ N +P
Sbjct: 537 TYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQE 596
Query: 661 VIYATLEHL 669
I L+ L
Sbjct: 597 SILKILDEL 605
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 680 | ||||||
| 147836314 | 768 | hypothetical protein VITISV_012660 [Viti | 0.992 | 0.878 | 0.679 | 0.0 | |
| 225462731 | 728 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.927 | 0.676 | 0.0 | |
| 356519676 | 728 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.929 | 0.610 | 0.0 | |
| 449527015 | 710 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.947 | 0.583 | 0.0 | |
| 449456490 | 710 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.947 | 0.582 | 0.0 | |
| 357475531 | 763 | Pentatricopeptide repeat-containing prot | 0.975 | 0.868 | 0.582 | 0.0 | |
| 255545044 | 567 | pentatricopeptide repeat-containing prot | 0.772 | 0.925 | 0.631 | 0.0 | |
| 38347497 | 749 | OSJNBa0091C07.7 [Oryza sativa Japonica G | 0.939 | 0.853 | 0.495 | 0.0 | |
| 357167336 | 687 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.935 | 0.498 | 0.0 | |
| 125589995 | 704 | hypothetical protein OsJ_14392 [Oryza sa | 0.919 | 0.887 | 0.496 | 0.0 |
| >gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/695 (67%), Positives = 556/695 (80%), Gaps = 20/695 (2%)
Query: 2 KLYATQSQTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSK 61
KLY L + I+STN AI+ + +L AR LFDQMP RTVVSWNTM+ YSK
Sbjct: 60 KLYTAHQSNL----SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSK 115
Query: 62 WAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFV 121
+F E+L LV +MHRS++KL+E+TFS++LSVCA+L L DGK IHCLVLKSG E FE V
Sbjct: 116 HGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELV 175
Query: 122 GSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDV 181
GS LL+FYA+CFEI EA+RVFD L NE+LWSLMLVGYV CN+M DA VF+KMP++DV
Sbjct: 176 GSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDV 235
Query: 182 VVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVH 241
V WT LISG++K+ DGC KAL++FR M SGE PNE+TFD V+RAC RLG G+ VH
Sbjct: 236 VAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVH 295
Query: 242 GLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIE 301
GLL+KCG E+D SIGGAL+EFYC CEA D A+RV + NPCLNA NSLI GLISMGRIE
Sbjct: 296 GLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIE 355
Query: 302 DAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIP---- 357
DAEL+FN +TE N +SYN MIKGYAV GQ+DDSKRLFEKMP R+I S NTMISV
Sbjct: 356 DAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGE 415
Query: 358 -----------EMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFH 406
+ E++PVTWNSMISGY+ + E+AL+LY+TM +L+I +TRSTFS LFH
Sbjct: 416 IDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFH 475
Query: 407 ACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAA 466
ACSCLGSLQQGQLLHAHL+KTPFESNVYVGTSL+DMYS+CGSI +AQ SF SI SPNVAA
Sbjct: 476 ACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAA 535
Query: 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM- 525
WTAL+NG+++HGLGSEA+ LF+ M+EQ + PN ATFVGVLSAC RAGLVNEGMKIF SM
Sbjct: 536 WTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSME 595
Query: 526 KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVG 585
+ Y V PTLEHY CVVDLLGRSGH+ EAEEFIK MP+E D VVWGALLSACWFWM++EVG
Sbjct: 596 RCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVG 655
Query: 586 ERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSR 645
ER A+KMF D KPIS+YVILSNIYA LG+W +KM +RK L +VKKDPGCSWIELN++
Sbjct: 656 ERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNK 715
Query: 646 VHAFSVEDRNNPNCNVIYATLEHLTANLNSVVLFD 680
+H FS+EDR++P CN+IYATLEHLTAN+NSVV FD
Sbjct: 716 IHVFSIEDRSHPYCNMIYATLEHLTANINSVVHFD 750
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Vitis vinifera] gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/695 (67%), Positives = 555/695 (79%), Gaps = 20/695 (2%)
Query: 2 KLYATQSQTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSK 61
KLY L + I+STN AI+ + +L AR LFDQMP RTVVSWNTM+ YSK
Sbjct: 20 KLYTAHQSNL----SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSK 75
Query: 62 WAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFV 121
+F E+L LV +MHRS++KL+E+TFS++LSVCA+L L DGK IHCLVLKSG E FE V
Sbjct: 76 HGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELV 135
Query: 122 GSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDV 181
GS LL+FYA+CFEI EA+RVFD L NE+LWSLMLVGYV CN+M DA VF+KMP++DV
Sbjct: 136 GSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDV 195
Query: 182 VVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVH 241
V WT LISG++K+ DGC KAL++FR M SGE PNE+TFD V+RAC RLG G+ VH
Sbjct: 196 VAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVH 255
Query: 242 GLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIE 301
GLL+KCG E+D SIGGAL+EFYC CEA D A+RV + NPCLNA NSLI GLISMGRIE
Sbjct: 256 GLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIE 315
Query: 302 DAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIP---- 357
DAEL+FN +TE N +SYN MIKGYAV GQ+DDSKRLFEKMP R+I S NTMISV
Sbjct: 316 DAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGE 375
Query: 358 -----------EMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFH 406
+ E++PVTWNSMISGY+ + E+AL+LY+TM +L+I +T+STFS LFH
Sbjct: 376 IDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFH 435
Query: 407 ACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAA 466
ACSCLGSL QGQLLHAHL+KTPFESNVYVGTSL+DMYS+CGSI +AQ SF SI SPNVAA
Sbjct: 436 ACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAA 495
Query: 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM- 525
WTAL+NG+++HGLGSEA+ LF+ M+EQ + PN ATFVGVLSAC RAGLVNEGMKIF SM
Sbjct: 496 WTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSME 555
Query: 526 KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVG 585
+ Y V PTLEHY CVVDLLGRSGH+ EAEEFIK MP+E D VVWGALLSACWFWM++EVG
Sbjct: 556 RCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVG 615
Query: 586 ERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSR 645
ER A+KMF D KPIS+YVILSNIYA LG+W +KM +RK L +VKKDPGCSWIELN++
Sbjct: 616 ERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNK 675
Query: 646 VHAFSVEDRNNPNCNVIYATLEHLTANLNSVVLFD 680
+H FS+EDR++P CN+IYATLEHLTAN+NSVV FD
Sbjct: 676 IHVFSIEDRSHPYCNMIYATLEHLTANINSVVHFD 710
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519676|ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/694 (61%), Positives = 526/694 (75%), Gaps = 17/694 (2%)
Query: 1 MKLYATQSQTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYS 60
+L+ T QT ++STN +I + + G+L AR+LFDQMP RTV SWNTM+ GYS
Sbjct: 24 FRLFTTHLQTTEPHVGNVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYS 83
Query: 61 KWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEF 120
++ E+L+LVS MHRS V LNE +FS +LS CA+ S + GKQ+H L+LKSGYE F
Sbjct: 84 LLGRYPEALTLVSFMHRSCVALNEVSFSAVLSACARSGSFLLGKQVHSLLLKSGYERFGL 143
Query: 121 VGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKD 180
VGS LL+F +C I EA+ VF+EL + N++LWSLML GYV+ ++M DA D+F KMP +D
Sbjct: 144 VGSALLYFCVHCCGIREAEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRD 203
Query: 181 VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVV 240
VV WT LISGYAK DGCE+AL LF MR S E +PNE+T D V+R CARLG GKVV
Sbjct: 204 VVAWTTLISGYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAGKVV 263
Query: 241 HGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPC-LNASNSLINGLISMGR 299
HGL IK G +FD SIGGA+ EFYCGCEA D A RVY+ + LN +NSLI GL+S GR
Sbjct: 264 HGLCIKGGLDFDNSIGGAVTEFYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVSKGR 323
Query: 300 IEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEM 359
IE+AEL+F L E N +SYN MIKGYA+ GQ + SKRLFEKM ++ SLNTMISV +
Sbjct: 324 IEEAELVFYELRETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPENLTSLNTMISVYSKN 383
Query: 360 ---------------ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVL 404
ERN V+WNSM+SGY+ N +++AL LY+ MR+L++D +RSTFSVL
Sbjct: 384 GELDEAVKLFDKTKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVL 443
Query: 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNV 464
F ACSCL S +QGQLLHAHL+KTPF+ NVYVGT+LVD YS+CG + +AQ SF SI SPNV
Sbjct: 444 FRACSCLCSFRQGQLLHAHLIKTPFQVNVYVGTALVDFYSKCGHLAEAQRSFISIFSPNV 503
Query: 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRS 524
AAWTAL+NGY++HGLGSEA+LLF ML Q IVPNAATFVGVLSAC AGLV EG++IF S
Sbjct: 504 AAWTALINGYAYHGLGSEAILLFRSMLHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHS 563
Query: 525 M-KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNME 583
M + YGV PT+EHYTCVVDLLGRSGHL EAEEFI MPIE D ++WGALL+A WFW +ME
Sbjct: 564 MQRCYGVTPTIEHYTCVVDLLGRSGHLKEAEEFIIKMPIEADGIIWGALLNASWFWKDME 623
Query: 584 VGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELN 643
VGERAA+K+F LD PI A+V+LSN+YA+LG+WG+K +RKRL LE++KDPGCSWIELN
Sbjct: 624 VGERAAEKLFSLDPNPIFAFVVLSNMYAILGRWGQKTKLRKRLQSLELRKDPGCSWIELN 683
Query: 644 SRVHAFSVEDRNNPNCNVIYATLEHLTANLNSVV 677
+++H FSVED+ + +VIYAT+EH+TA +NS++
Sbjct: 684 NKIHLFSVEDKTHLYSDVIYATVEHITATINSII 717
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/689 (58%), Positives = 519/689 (75%), Gaps = 16/689 (2%)
Query: 1 MKLYATQSQTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYS 60
++L++T + L T+ + I+STN I+ R+G L A+ LF++MP+R+VVSWN M+ GYS
Sbjct: 20 LELFSTLCEGLHTENSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYS 79
Query: 61 KWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEF 120
K+ K+ E+L+L S MH +NVKLNETTFS++LS+CA +GKQ HCLVLKSG + FE
Sbjct: 80 KFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFER 139
Query: 121 VGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKD 180
VGS L++FYAN +I AK+VFDELH+ N+LLW L+LVGYV+CNLM DA D+F+K+P +D
Sbjct: 140 VGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRD 199
Query: 181 VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVV 240
VV WT +IS YA+S C++ L+LF MR +GE PNE+TFDSV+RAC R+ GKVV
Sbjct: 200 VVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVV 259
Query: 241 HGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRI 300
HG+L K GF FD S+ ALI FYC CEA D A VYD +E PCL ASNSL+ GLI GRI
Sbjct: 260 HGILTKYGFHFDHSVCSALILFYCQCEAIDSAKAVYDSMERPCLKASNSLLEGLIFAGRI 319
Query: 301 EDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIP--- 357
DAE IF +L E N +SYN M+KGYA G+++ SKRLFE+M H++ SLNTMISV
Sbjct: 320 NDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNG 379
Query: 358 ------------EMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLF 405
+ E +PVTWNSMISGY+QN+ HE AL+LY+TM + +++R+RSTFS LF
Sbjct: 380 EIDKAFKLFESVKSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALF 439
Query: 406 HACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVA 465
AC+CL +Q GQ LH H ++ F+SNVYVGTSL+DMY++CGSI DAQ SF+S+ PNVA
Sbjct: 440 QACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCLPNVA 499
Query: 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM 525
A+TAL+NGY HHGLG EA +F+ ML+ + PN AT +G+LSAC AG+V EGM +F SM
Sbjct: 500 AFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSM 559
Query: 526 -KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEV 584
K YGV+PTLEHY CVVDLLGRSG L+EAE FI+ MPIE D V+WGALL+ACWFWM++E+
Sbjct: 560 EKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLEL 619
Query: 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNS 644
GE A+K+ LD K ISAY+ILSNIYA LGKW +K+++R++L L+VKK GCSWI++N+
Sbjct: 620 GESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRKLMSLKVKKIRGCSWIDVNN 679
Query: 645 RVHAFSVEDRNNPNCNVIYATLEHLTANL 673
+ FS DR++PNCN IY+TLEHL AN+
Sbjct: 680 KTCVFSAGDRSHPNCNAIYSTLEHLLANV 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/689 (58%), Positives = 518/689 (75%), Gaps = 16/689 (2%)
Query: 1 MKLYATQSQTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYS 60
++L++T + L T+ + I+STN I+ R+G L A+ LF++MP+R+VVSWN M+ GYS
Sbjct: 20 LELFSTLCEGLHTENSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYS 79
Query: 61 KWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEF 120
K+ K+ E+L+L S MH +NVKLNETTFS++LS+CA +GKQ HCLVLKSG + FE
Sbjct: 80 KFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFER 139
Query: 121 VGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKD 180
VGS L++FYAN +I AK+VFDELH+ N+LLW L+LVGYV+CNLM DA D+F+K+P +D
Sbjct: 140 VGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRD 199
Query: 181 VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVV 240
VV WT +IS YA+S C++ L+LF MR +GE PNE+TFDSV+RAC R+ GKVV
Sbjct: 200 VVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVV 259
Query: 241 HGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRI 300
HG+L K GF FD S+ ALI FYC CEA D A VYD +E PCL ASNSL+ GLI GRI
Sbjct: 260 HGILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIFAGRI 319
Query: 301 EDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIP--- 357
DAE IF +L E N +SYN M+KGYA G+++ SKRLFE+M H++ SLNTMISV
Sbjct: 320 NDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNG 379
Query: 358 ------------EMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLF 405
+ E +PVTWNSMISG +QN+ HE AL+LY+TM + +++R+RSTFS LF
Sbjct: 380 EIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALF 439
Query: 406 HACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVA 465
AC+CL +Q GQ LH H ++ F+SNVYVGTSL+DMY++CGSI DAQ SF+S+ PNVA
Sbjct: 440 QACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCFPNVA 499
Query: 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM 525
A+TAL+NGY HHGLG EA +F+ ML+ + PN AT +G+LSAC AG+V EGM +F SM
Sbjct: 500 AFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSM 559
Query: 526 -KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEV 584
K YGV+PTLEHY CVVDLLGRSG L+EAE FI+ MPIE D V+WGALL+ACWFWM++E+
Sbjct: 560 EKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLEL 619
Query: 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNS 644
GE A+K+ LD K ISAY+ILSNIYA LGKW +K+++R++L L+VKK GCSWI++N+
Sbjct: 620 GESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRQLMSLKVKKIRGCSWIDVNN 679
Query: 645 RVHAFSVEDRNNPNCNVIYATLEHLTANL 673
+ FS DR++PNCN IY+TLEHL AN+
Sbjct: 680 KTCVFSAGDRSHPNCNAIYSTLEHLLANV 708
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357475531|ref|XP_003608051.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355509106|gb|AES90248.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/680 (58%), Positives = 497/680 (73%), Gaps = 17/680 (2%)
Query: 18 IVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHR 77
++STN +I + G+LV AR++FD+MP+RTV SWNTM+ GYS+W K+ E+L+LVS MH
Sbjct: 37 VISTNISIAHHAKTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALTLVSFMHS 96
Query: 78 SNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEE 137
S VK NE +FS LS C + SL GKQIH L+ KSGY+ F VGS LL +Y C I E
Sbjct: 97 SCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQCCGIRE 156
Query: 138 AKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDG 197
A+ VF+EL ++N +LWSLML GYVQ +++ DA ++F KMP +DVV WT LISGYAK DG
Sbjct: 157 AEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAKREDG 216
Query: 198 CEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGG 257
CE+AL LF MR S E +PNE+T D V+R CARL GKVVHGL IK GF+FD S+
Sbjct: 217 CERALDLFGCMRRSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFDFDNSVSS 276
Query: 258 ALIEFYCGCEAFDGAMRVYDRL-ENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSI 316
AL EFYC +A D A RVY+ + C N ++SLI GL+SMGR+++A +IF L + I
Sbjct: 277 ALAEFYCVSDAVDDAKRVYESMVGEACSNVADSLIGGLVSMGRVKEAGMIFYGLRDKTLI 336
Query: 317 SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEM---------------ER 361
S N MIKGYA+ GQ SK+LFEKM + + SLNTMI+V + ER
Sbjct: 337 SNNLMIKGYAMSGQFKKSKKLFEKMSLKHLTSLNTMITVYSKNGELDEAVKLFDKTKGER 396
Query: 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLH 421
N VTWNSM+SGY+ N H +AL+LY+TMR+ ++ +RSTFSVLF AC+ L S QQGQLLH
Sbjct: 397 NCVTWNSMMSGYIHNGEHSEALKLYVTMRRFLVEYSRSTFSVLFRACAYLCSFQQGQLLH 456
Query: 422 AHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGS 481
AHL KTP++ NVYVGT+LVD YS+CG + DAQ SF+SI SPNVAAWTAL+NGY++HG GS
Sbjct: 457 AHLAKTPYQENVYVGTALVDFYSKCGHLADAQRSFTSIFSPNVAAWTALINGYAYHGCGS 516
Query: 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCV 540
EA+ F ML+Q +VPNAATFV VLSAC AGLV+EG+K F SM+ +Y + PT+EHYTCV
Sbjct: 517 EAISRFRSMLDQGVVPNAATFVAVLSACSHAGLVDEGLKFFHSMQINYRITPTIEHYTCV 576
Query: 541 VDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600
VDLLGRSG + EAEEFI MPI+ D V+WGALL+A FW N+E+GERAA K+F LD +
Sbjct: 577 VDLLGRSGRVKEAEEFIIQMPIKADGVIWGALLNASCFWNNVELGERAAVKLFSLDPNSV 636
Query: 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCN 660
SA V LSN+YA G+WGKK IRKRL LE++KD G SWIELN+ VH FSVED +P +
Sbjct: 637 SALVTLSNMYARRGRWGKKTKIRKRLQSLELRKDQGFSWIELNNNVHLFSVEDTTHPYSD 696
Query: 661 VIYATLEHLTANLNSVVLFD 680
VIY T+EH+TA +NS+V F+
Sbjct: 697 VIYKTVEHITATINSIVPFN 716
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545044|ref|XP_002513583.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547491|gb|EEF48986.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/540 (63%), Positives = 417/540 (77%), Gaps = 15/540 (2%)
Query: 1 MKLYATQSQTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYS 60
+K Y+T + + VSTN AIT GQL AR LFD+MP RT VSWNTM+ Y
Sbjct: 18 VKCYSTHVHVSRSDDPCTVSTNIAITRYAIKGQLDFARCLFDKMPQRTSVSWNTMISSYL 77
Query: 61 KWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEF 120
KW KF ES SL+S MHRSN +L+ETTFSTILSVC + S DGKQIHCLVLKSG FE
Sbjct: 78 KWGKFKESFSLLSLMHRSNTQLDETTFSTILSVCTRTQSFCDGKQIHCLVLKSGCGSFEL 137
Query: 121 VGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKD 180
VGS LL+FY NC +I++AKRVFDELH+ NE++WS M+V YVQ L++DA+D+F+KMPKK+
Sbjct: 138 VGSVLLYFYGNCSQIDDAKRVFDELHDKNEVVWSSMVVCYVQRGLLTDAYDLFVKMPKKE 197
Query: 181 VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVV 240
VV W+KLISGYAKS EKAL+LF+ MRESGE +PNE+T DSVIR C +LGA EG VV
Sbjct: 198 VVSWSKLISGYAKSEVRSEKALELFQLMRESGEVLPNEFTLDSVIRVCGKLGALSEGMVV 257
Query: 241 HGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRI 300
HG+LIK GFEFD+SI GAL++FYC CEA D A R+YD + PC +ASNSLI G + +GRI
Sbjct: 258 HGILIKTGFEFDQSISGALVQFYCDCEAIDDAKRIYDGIAYPCSSASNSLIEGYVLLGRI 317
Query: 301 EDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIP--- 357
+DA+LIFNR TE NS N M+K Y++ G+V+DSK LFEKMP ++IIS NTMISV
Sbjct: 318 KDADLIFNRATEKNSALCNLMVKAYSMSGRVEDSKTLFEKMPQKTIISSNTMISVYSRNG 377
Query: 358 ------------EMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLF 405
+ +RNPVTWNSM+SGYVQN HE+AL+LY+TM++ ++D TRSTFSVLF
Sbjct: 378 ELDKALMLFEQTKDQRNPVTWNSMLSGYVQNEQHEEALKLYVTMKRSSVDCTRSTFSVLF 437
Query: 406 HACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVA 465
ACS +GSLQQG++LHA+L+KTPF SNVYVGTSLVDMYS+CGSI DA+ SFSSIS+PNVA
Sbjct: 438 RACSYIGSLQQGKMLHANLIKTPFASNVYVGTSLVDMYSKCGSIFDAKKSFSSISAPNVA 497
Query: 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM 525
AWTAL+NGY+HHG GSEA+LLF+ MLEQ +VPN ATFVG+L+AC RAGL E + + +
Sbjct: 498 AWTALINGYAHHGFGSEAILLFQHMLEQKVVPNGATFVGILTACDRAGLTAEAVPFIQEV 557
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/656 (49%), Positives = 460/656 (70%), Gaps = 17/656 (2%)
Query: 36 TARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCA 95
AR +FD M R +SWN + +++ + ++L + MHRS L+E T+++ L CA
Sbjct: 64 AARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACA 123
Query: 96 QLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSL 155
+ L G Q+HC V+KSG + F VG+ LL FY++C +++ A+ +FD LH +NELLWS
Sbjct: 124 RGRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSP 183
Query: 156 MLVGYVQCNLMSDAFDVFIKMPK-KDVVVWTKLISGYAKSVDG-CEKALKLFRWMRESGE 213
M+V V+ NL+SDA D+ +MP +D+ WT +ISGYA+ + C K+L+LF +
Sbjct: 184 MVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDG 243
Query: 214 NMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAM 273
MPNE+T+DSV+RAC ++GA G+ +HG LI+ GFE ++ I AL++ YC A D A+
Sbjct: 244 VMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAV 303
Query: 274 RVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDD 333
VY+ L+ P L SN+LI G ISMGR EDA+L+F+++TE +S SYN MIK YA G+++D
Sbjct: 304 MVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLED 363
Query: 334 SKRLFEKMPHRSIISLNTMISVIPEM---------------ERNPVTWNSMISGYVQNNL 378
+R+FE MP R++++LN+M+SV+ + ERN VTWNSMISGYVQN+
Sbjct: 364 CRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQ 423
Query: 379 HEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTS 438
+AL+L+ M +L+I+ + STF L HAC+ +G+++QG+++HA L KTPFESN YVGT+
Sbjct: 424 SSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTA 483
Query: 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN 498
LVDMYS+CG ++DA+A+FS I SPNVA+WT+L+NG + +G EA++ F ML+ ++ PN
Sbjct: 484 LVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPN 543
Query: 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIK 558
TF+G+L A RAGLVN+GM+ F SM+SYGVVPT+EHYTC VDLLGR+ + EAE+FI
Sbjct: 544 EITFLGILMASARAGLVNKGMRFFHSMESYGVVPTVEHYTCAVDLLGRARRVREAEKFIS 603
Query: 559 DMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGK 618
MPI D VVWGALL+ACW+ M++E+GE+ A+K+F + K ISAYV +SNIYA LGKW
Sbjct: 604 KMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLGKWED 663
Query: 619 KMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674
+ +R RL + KK+PGCSWIE+ VH F VEDRN+P IY LE L +N++
Sbjct: 664 VVKVRTRLRSINAKKEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLMLEDLVSNIS 719
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357167336|ref|XP_003581113.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/660 (49%), Positives = 460/660 (69%), Gaps = 17/660 (2%)
Query: 31 NGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTI 90
+G AR LFD M RTVV+WN M+ G+++ F ++L L + MHRS V +E TF+++
Sbjct: 9 SGDTAAARRLFDGMRRRTVVTWNAMVAGHARCGSFLDALDLAARMHRSGVSPSEATFASV 68
Query: 91 LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNE 150
L CA+ L G Q+HC V+KSG E FE VG+ LL FY++CF++ A +FD LH NE
Sbjct: 69 LGACARGRRLCVGAQVHCQVVKSGSENFEVVGASLLDFYSSCFDLSAAHMLFDTLHPRNE 128
Query: 151 LLWSLMLVGYVQCNLMSDAFDVFIKMP-KKDVVVWTKLISGYAKSV-DGCEKALKLFRWM 208
LWS M+V V+ NL+SDA D+ +MP +DV WT +ISGYA+ D C KA+ LF M
Sbjct: 129 RLWSPMVVALVRFNLLSDALDLLDRMPAPRDVFAWTAVISGYARGASDCCRKAIGLFVRM 188
Query: 209 RESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEA 268
MPNE+TFDSV+RAC ++GA G+ VHG L++ GF+ D+ I AL++ YC +A
Sbjct: 189 LADHGVMPNEFTFDSVLRACVKMGALDFGRSVHGCLLRSGFDTDKLITSALVDLYCSSDA 248
Query: 269 FDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVY 328
A+ VY+ LE P L SN+LI GLISM ++A+++F+++ E +S +YN MIK Y +
Sbjct: 249 VADALLVYNDLEMPSLITSNALIGGLISMHMTDEAKIVFSQMPEHDSSTYNLMIKAYGIE 308
Query: 329 GQVDDSKRLFEKMPHRSIISLNTMISVIPEM---------------ERNPVTWNSMISGY 373
G+++ +R+FEKMP R+I++LN+M+SV+ + ERN +TWNSMISGY
Sbjct: 309 GKLEQCQRMFEKMPRRNIVTLNSMMSVLLQNGKLEEGLKLFEQIKDERNTITWNSMISGY 368
Query: 374 VQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNV 433
+QNN +AL+L++TMR+L+I + STF L HAC +G+++QG+++HAHL KTPFESN
Sbjct: 369 IQNNHSSEALKLFVTMRRLSIICSPSTFPTLLHACGTVGTIEQGKMVHAHLCKTPFESNG 428
Query: 434 YVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ 493
YVGT+LVDMYS+CG ++DA +F I+SPNVA+WT+++NG +H+G +A++ F ML
Sbjct: 429 YVGTALVDMYSKCGCVSDALDAFCCITSPNVASWTSVINGLAHNGQCLKAIVEFGRMLRH 488
Query: 494 DIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553
I PN TF+G+L A RAGLVN+GM+ F SM+ YG++PT+EHYTC VDLLGR+G + EA
Sbjct: 489 RINPNEITFLGLLMASSRAGLVNKGMRFFHSMERYGLLPTVEHYTCAVDLLGRNGRIIEA 548
Query: 554 EEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL 613
E+FI MP+ D V WGALL+ACW+ M++E+GE+ A+K+F + K SAYV +SNIYA L
Sbjct: 549 EKFISAMPVPADGVAWGALLTACWYSMDLEMGEKVAEKLFFMGTKHKSAYVAMSNIYAKL 608
Query: 614 GKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANL 673
GKW + +R RL L+ KK+PGCSWI + VH F VEDRN+P + IY LE L +N+
Sbjct: 609 GKWEDVVKVRTRLRSLDAKKEPGCSWIGVKDTVHVFLVEDRNHPERDEIYLMLEDLVSNI 668
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/642 (49%), Positives = 453/642 (70%), Gaps = 17/642 (2%)
Query: 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCL 109
+SWN + +++ + ++L + MHRS L+E T+++ L CA+ L G Q+HC
Sbjct: 33 LSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQ 92
Query: 110 VLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDA 169
V+KSG + F VG+ LL FY++C +++ A+ +FD LH +NELLWS M+V V+ NL+SDA
Sbjct: 93 VVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDA 152
Query: 170 FDVFIKMP-KKDVVVWTKLISGYAKSVDG-CEKALKLFRWMRESGENMPNEYTFDSVIRA 227
D+ +MP +D+ WT +ISGYA+ + C K+L+LF + MPNE+T+DSV+RA
Sbjct: 153 LDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRA 212
Query: 228 CARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNAS 287
C ++GA G+ +HG LI+ GFE ++ I AL++ YC A D A+ VY+ L+ P L S
Sbjct: 213 CVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITS 272
Query: 288 NSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSII 347
N+LI G ISMGR EDA+L+F+++TE +S SYN MIK YA G+++D +R+FE MP R+++
Sbjct: 273 NTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMV 332
Query: 348 SLNTMISVIPEM---------------ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL 392
+LN+M+SV+ + ERN VTWNSMISGYVQN+ +AL+L+ M +L
Sbjct: 333 TLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRL 392
Query: 393 AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDA 452
+I+ + STF L HAC+ +G+++QG+++HA L KTPFESN YVGT+LVDMYS+CG ++DA
Sbjct: 393 SIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDA 452
Query: 453 QASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRA 512
+A+FS I SPNVA+WT+L+NG + +G EA++ F ML+ ++ PN TF+G+L A RA
Sbjct: 453 RAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARA 512
Query: 513 GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGAL 572
GLVN+GM+ F SM+SYGVVPT+EHYTC VDLLGR+ + EAE+FI MPI D VVWGAL
Sbjct: 513 GLVNKGMRFFHSMESYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGAL 572
Query: 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632
L+ACW+ M++E+GE+ A+K+F + K ISAYV +SNIYA LGKW + +R RL + K
Sbjct: 573 LTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLGKWEDVVKVRTRLRSINAK 632
Query: 633 KDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674
K+PGCSWIE+ VH F VEDRN+P IY LE L +N++
Sbjct: 633 KEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLMLEDLVSNIS 674
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 680 | ||||||
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.455 | 0.417 | 0.366 | 2.3e-99 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.479 | 0.383 | 0.359 | 3.4e-86 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.461 | 0.380 | 0.373 | 1.7e-82 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.882 | 0.768 | 0.317 | 2.9e-80 | |
| TAIR|locus:505006163 | 761 | AT1G32415 "AT1G32415" [Arabido | 0.904 | 0.808 | 0.317 | 4.7e-80 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.464 | 0.364 | 0.364 | 4.3e-78 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.925 | 0.754 | 0.312 | 6.2e-78 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.455 | 0.313 | 0.392 | 1.6e-77 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.552 | 0.365 | 0.324 | 2e-77 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.780 | 0.753 | 0.318 | 2.1e-77 |
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
Identities = 114/311 (36%), Positives = 179/311 (57%)
Query: 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAXXXXXXXXXXXX 419
++N V+W +M+ GY Q E+A+++++ M++ ID T A
Sbjct: 333 QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ 392
Query: 420 XHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGL 479
H + + V V SLV +Y +CG I+D+ F+ ++ + +WTA+++ Y+ G
Sbjct: 393 FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGR 452
Query: 480 GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS-YGVVPTLEHYT 538
E + LF+ M++ + P+ T GV+SAC RAGLV +G + F+ M S YG+VP++ HY+
Sbjct: 453 AVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYS 512
Query: 539 CVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598
C++DL RSG L EA FI MP DA+ W LLSAC N+E+G+ AA+ + LD
Sbjct: 513 CMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPH 572
Query: 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPN 658
+ Y +LS+IYA GKW +R+ + VKK+PG SWI+ ++H+FS +D ++P
Sbjct: 573 HPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPY 632
Query: 659 CNVIYATLEHL 669
+ IYA LE L
Sbjct: 633 LDQIYAKLEEL 643
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 3.4e-86, Sum P(2) = 3.4e-86
Identities = 119/331 (35%), Positives = 179/331 (54%)
Query: 344 RSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSV 403
+ + + M + ER+ VTW MI GY Q+ KAL+L M + + F++
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480
Query: 404 --LFHAXXXXXXXXXXXXXHAHLVKTPFES-NVYVGTSLVDMYSRCGSINDAQASFSSIS 460
A HA+ ++ + ++V L+DMY++CGSI+DA+ F ++
Sbjct: 481 SCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMM 540
Query: 461 SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMK 520
+ N WT+LM GY HG G EA+ +F+ M + T + VL AC +G++++GM+
Sbjct: 541 AKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGME 600
Query: 521 IFRSMKS-YGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFW 579
F MK+ +GV P EHY C+VDLLGR+G L+ A I++MP+E VVW A LS C
Sbjct: 601 YFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIH 660
Query: 580 MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSW 639
+E+GE AA+K+ L +Y +LSN+YA G+W IR + H VKK PGCSW
Sbjct: 661 GKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSW 720
Query: 640 IELNSRVHAFSVEDRNNPNCNVIYATL-EHL 669
+E F V D+ +P+ IY L +H+
Sbjct: 721 VEGIKGTTTFFVGDKTHPHAKEIYQVLLDHM 751
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 118/316 (37%), Positives = 190/316 (60%)
Query: 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAXXXXXXXXXXXX 419
+R V+W ++ISGYVQ LH L+L+ MR + +STF+ + A
Sbjct: 414 QRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQ 473
Query: 420 XHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGL 479
HA ++++ NV+ G+ LVDMY++CGSI DA F + N +W AL++ ++ +G
Sbjct: 474 LHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGD 533
Query: 480 GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS-YGVVPTLEHYT 538
G A+ F M+E + P++ + +GVL+AC G V +G + F++M YG+ P +HY
Sbjct: 534 GEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYA 593
Query: 539 CVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDK- 597
C++DLLGR+G EAE+ + +MP E D ++W ++L+AC N + ERAA+K+F ++K
Sbjct: 594 CMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKL 653
Query: 598 KPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNP 657
+ +AYV +SNIYA G+W K D++K + +KK P SW+E+N ++H FS D+ +P
Sbjct: 654 RDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHP 713
Query: 658 NCNVIYATLEHLTANL 673
N + I + LTA +
Sbjct: 714 NGDEIVRKINELTAEI 729
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 203/639 (31%), Positives = 327/639 (51%)
Query: 49 VVSWNTMLCGYSKWAKFDESLSLVSTMHR-SNVKLNETTFSTILSVCAQL-NSLIDGKQI 106
+ WN + Y + + +E+L + M R S+V N + + +L L D
Sbjct: 64 IKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPE 123
Query: 107 HCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLM 166
LV + + G Y + +A+ +F+ + E + W+ ML GY Q +
Sbjct: 124 RDLV------SWNVMIKG----YVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173
Query: 167 SDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIR 226
DA VF +MP+K+ V W L+S Y ++ E+A LF+ S EN + V
Sbjct: 174 DDARSVFDRMPEKNDVSWNALLSAYVQN-SKMEEACMLFK----SREN------WALVSW 222
Query: 227 ACARLGAFCEGKVVHGLLIKCGFEFDESIG-GALIEFYCGCEAFDGAMRVYDRLENPCLN 285
C G + K+V + + +I Y D A +++D +
Sbjct: 223 NCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF 282
Query: 286 ASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRS 345
++++G I +E+A +F+++ E N +S+N+M+ GY +++ +K LF+ MP R+
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN 342
Query: 346 IISLNTMIS-------------VIPEM-ERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391
+ + NTMI+ + +M +R+PV+W +MI+GY Q+ +AL+L++ M +
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402
Query: 392 LAIDRTRSTFSVLFHAXXXXXXXXXXXXXHAHLVKTPFESNVYVGTSLVDMYSRCGSIND 451
RS+FS H LVK +E+ +VG +L+ MY +CGSI +
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE 462
Query: 452 AQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR 511
A F ++ ++ +W ++ GYS HG G A+ FE M + + P+ AT V VLSAC
Sbjct: 463 ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSH 522
Query: 512 AGLVNEGMKIFRSM-KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWG 570
GLV++G + F +M + YGV+P +HY C+VDLLGR+G L +A +K+MP E DA +WG
Sbjct: 523 TGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWG 582
Query: 571 ALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630
LL A N E+ E AA K+F ++ + YV+LSN+YA G+WG +R R+
Sbjct: 583 TLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKG 642
Query: 631 VKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHL 669
VKK PG SWIE+ ++ H FSV D +P + I+A LE L
Sbjct: 643 VKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEEL 681
|
|
| TAIR|locus:505006163 AT1G32415 "AT1G32415" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 215/677 (31%), Positives = 352/677 (51%)
Query: 18 IVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHR 77
+V +++ + G L AR LF+ MP R +V+ N ML GY K + +E+ +L M +
Sbjct: 77 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK 136
Query: 78 SNVKLNETTFSTIL------SVCAQL------------NSLIDGKQIHCLVLKSGYECFE 119
NV ++ T T L +L N+L+ G I ++ + F+
Sbjct: 137 -NV-VSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGL-IRNGDMEKAKQVFD 193
Query: 120 FVGS-------GLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDV 172
+ S ++ Y +EEAK +F ++ E N + W+ M+ GY + + +A+ +
Sbjct: 194 AMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRL 253
Query: 173 FIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENM-PNEYTFDSVIRACARL 231
F +MP++++V WT +ISG+A + + +AL LF M++ + + PN T S+ AC L
Sbjct: 254 FCEMPERNIVSWTAMISGFAWN-ELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGL 312
Query: 232 GA-FCE-GKVVHGLLIKCGFE---FDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNA 286
G F G+ +H +I G+E D + +L+ Y A + + E+ L +
Sbjct: 313 GVEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLN--ESFDLQS 370
Query: 287 SNSLINGLISMGRIEDAELIFNRLTEANS-ISYNSMIKGYAVYGQVDDSKRLFEKMPHRS 345
N +IN + G +E AE +F R+ + +S+ SMI GY G V + LF+K+ H
Sbjct: 371 CNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKL-H-- 427
Query: 346 IISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLF 405
+++ VTW MISG VQN L +A L M + + ST+SVL
Sbjct: 428 --------------DKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLL 473
Query: 406 HAXXXXXXXXXXXXXHAHLVKTP--FESNVYVGTSLVDMYSRCGSINDAQASFSSISSPN 463
+ H + KT ++ ++ + SLV MY++CG+I DA F+ + +
Sbjct: 474 SSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKD 533
Query: 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFR 523
+W +++ G SHHGL +A+ LF+ ML+ PN+ TF+GVLSAC +GL+ G+++F+
Sbjct: 534 TVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFK 593
Query: 524 SMK-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWF-WMN 581
+MK +Y + P ++HY ++DLLGR+G L EAEEFI +P D V+GALL C W +
Sbjct: 594 AMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRD 653
Query: 582 ME---VGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCS 638
+ + ERAA ++ LD +V L N+YA LG+ + ++RK + VKK PGCS
Sbjct: 654 KDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCS 713
Query: 639 WIELNSRVHAFSVEDRN 655
W+ +N R + F D++
Sbjct: 714 WVVVNGRANVFLSGDKS 730
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 4.3e-78, Sum P(2) = 4.3e-78
Identities = 116/318 (36%), Positives = 183/318 (57%)
Query: 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAXXXXXXXXXXXXX 420
+N ++W S+I+G NN +AL +++ K+ + T + A
Sbjct: 462 KNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEI 520
Query: 421 HAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLG 480
HAH+++T + ++ +L+DMY RCG +N A + F+S +V +W L+ GYS G G
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQG 579
Query: 481 SEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV 540
S V LF+ M++ + P+ TF+ +L C ++ +V +G+ F M+ YGV P L+HY CV
Sbjct: 580 SMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACV 639
Query: 541 VDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600
VDLLGR+G L EA +FI+ MP+ D VWGALL+AC +++GE +AQ +F LDKK +
Sbjct: 640 VDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSV 699
Query: 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCN 660
Y++L N+YA GKW + +R+ + + D GCSW+E+ +VHAF +D+ +P
Sbjct: 700 GYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTK 759
Query: 661 VIYATLEHLTANLNSVVL 678
I LE ++ V L
Sbjct: 760 EINTVLEGFYEKMSEVGL 777
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 205/657 (31%), Positives = 337/657 (51%)
Query: 30 RNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFST 89
++G + AR +FD +P ++ V+W TM+ G K + SL L + NV + ST
Sbjct: 195 KDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILST 254
Query: 90 ILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDN 149
+LS C+ L L GKQIH +L+ G E + + L+ Y C + A ++F+ + N
Sbjct: 255 VLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKN 314
Query: 150 ELLWSLMLVGYVQCNLMSDAFDVFIKMPK----KDVVVWTKLISGYAKSVDGCEKALKLF 205
+ W+ +L GY Q L +A ++F M K D+ + +++ A S+ ++
Sbjct: 315 IISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA-SLHALGFGTQVH 373
Query: 206 RWMRESGENMPNE-YTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYC 264
+ ++ N+ N+ Y +S+I A+ + + V + D + A+IE Y
Sbjct: 374 AYTIKA--NLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAA----DVVLFNAMIEGYS 427
Query: 265 --GCE-AFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSM 321
G + A+ ++ + + S L+ +S+ R A L + I + M
Sbjct: 428 RLGTQWELHEALNIFRDMRFRLIRPS--LLT-FVSLLR---ASASLTSLGLSKQI-HGLM 480
Query: 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEME-RNPVTWNSMISGYVQNNLHE 380
K Y + + L + + + L V EM+ ++ V WNSM +GYVQ + +E
Sbjct: 481 FK-YGLNLDIFAGSALIDV--YSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENE 537
Query: 381 KALQLYMTMRKLAIDRTRS-TFSVLFHAXXXXXXXXXXXXXHAHLVKTPFESNVYVGTSL 439
+AL L++ ++ L+ +R TF+ + A H L+K E N Y+ +L
Sbjct: 538 EALNLFLELQ-LSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNAL 596
Query: 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA 499
+DMY++CGS DA +F S +S +V W ++++ Y++HG G +A+ + E M+ + I PN
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNY 656
Query: 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKD 559
TFVGVLSAC AGLV +G+K F M +G+ P EHY C+V LLGR+G L++A E I+
Sbjct: 657 ITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEK 716
Query: 560 MPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619
MP + A+VW +LLS C N+E+ E AA+ D K ++ +LSNIYA G W +
Sbjct: 717 MPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEA 776
Query: 620 MDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLNSV 676
+R+R+ V K+PG SWI +N VH F +D+++ N IY L+ L + V
Sbjct: 777 KKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIRGV 833
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 122/311 (39%), Positives = 182/311 (58%)
Query: 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAXXXXXXXXXXXXXHAH 423
V W +MISG ++N E+A ++ MR + + T + L A HA+
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHAN 643
Query: 424 LVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEA 483
+K ++ +VGTSLVDMY++CGSI+DA F I N+ AW A++ G + HG G E
Sbjct: 644 ALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKET 703
Query: 484 VLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS-YGVVPTLEHYTCVVD 542
+ LF+ M I P+ TF+GVLSAC +GLV+E K RSM YG+ P +EHY+C+ D
Sbjct: 704 LQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLAD 763
Query: 543 LLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602
LGR+G + +AE I+ M +E A ++ LL+AC + E G+R A K+ L+ SA
Sbjct: 764 ALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA 823
Query: 603 YVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVI 662
YV+LSN+YA KW + R + +VKKDPG SWIE+ +++H F V+DR+N +I
Sbjct: 824 YVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELI 883
Query: 663 YATLEHLTANL 673
Y ++ + ++
Sbjct: 884 YRKVKDMIRDI 894
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 2.0e-77, Sum P(3) = 2.0e-77
Identities = 128/394 (32%), Positives = 207/394 (52%)
Query: 290 LINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISL 349
L +++ G + +E+ F + EA S+ G +GQ+ +KR F ISL
Sbjct: 616 LFQEMLTRG-VNPSEITFATIVEACH-KPESLTLGTQFHGQI--TKRGFSSEGEYLGISL 671
Query: 350 NTMI----------SVIPEME--RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT 397
M ++ E+ ++ V W M+SG+ QN +E+AL+ Y MR +
Sbjct: 672 LGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPD 731
Query: 398 RSTFSVLFHAXXXXXXXXXXXXXHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFS 457
++TF + H+ + + + +L+DMY++CG + + F
Sbjct: 732 QATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFD 791
Query: 458 SISS-PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVN 516
+ NV +W +L+NGY+ +G +A+ +F+ M + I+P+ TF+GVL+AC AG V+
Sbjct: 792 EMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVS 851
Query: 517 EGMKIFRSM-KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSA 575
+G KIF M YG+ ++H C+VDLLGR G+L EA++FI+ ++ DA +W +LL A
Sbjct: 852 DGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGA 911
Query: 576 CWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDP 635
C + GE +A+K+ L+ + SAYV+LSNIYA G W K +RK + VKK P
Sbjct: 912 CRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVP 971
Query: 636 GCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHL 669
G SWI++ R H F+ D+++ I LE L
Sbjct: 972 GYSWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDL 1005
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 178/559 (31%), Positives = 298/559 (53%)
Query: 128 FYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKL 187
++AN +A+++FDE+ + N + W+ ++ GY++ + +A VF MP+++VV WT L
Sbjct: 58 YFANLMP-RDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTAL 116
Query: 188 ISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKC 247
+ GY + + A LF M E N+ ++ ++ + G + ++ ++
Sbjct: 117 VKGYVHN-GKVDVAESLFWKMPEK-----NKVSWTVMLIGFLQDGRIDDACKLYEMIP-- 168
Query: 248 GFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIF 307
+ D ++I C D A ++D + + +++ G R++DA IF
Sbjct: 169 --DKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIF 226
Query: 308 NRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMIS------------- 354
+ + E +S+ SM+ GY G+++D++ LFE MP + +I+ N MIS
Sbjct: 227 DVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARR 286
Query: 355 VIPEM-ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAXXXXXX 413
V M ERN +W ++I + +N +AL L++ M+K + T T +
Sbjct: 287 VFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLAS 346
Query: 414 XXXXXXXHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNG 473
HA LV+ F+ +VYV + L+ MY +CG + ++ F S ++ W ++++G
Sbjct: 347 LHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISG 406
Query: 474 YSHHGLGSEAVLLF-EIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS-YGVV 531
Y+ HGLG EA+ +F E+ L PN TFV LSAC AG+V EG+KI+ SM+S +GV
Sbjct: 407 YASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVK 466
Query: 532 PTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQK 591
P HY C+VD+LGR+G +EA E I M +E DA VWG+LL AC ++V E A+K
Sbjct: 467 PITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKK 526
Query: 592 MFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSV 651
+ ++ + Y++LSN+YA G+W ++RK + V+K PGCSW E+ ++VHAF+
Sbjct: 527 LIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTR 586
Query: 652 EDRNN-PNCNVIYATLEHL 669
N+ P I L+ L
Sbjct: 587 GGINSHPEQESILKILDEL 605
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SIT7 | PP151_ARATH | No assigned EC number | 0.3273 | 0.8470 | 0.8263 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 680 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-109 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-88 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-58 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-43 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-31 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 350 bits (900), Expect = e-109
Identities = 203/647 (31%), Positives = 311/647 (48%), Gaps = 115/647 (17%)
Query: 22 NKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVK 81
N IT + G +V+AR +FD+MP R +SWN M+ GY + + E L L TM +V
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 82 LNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRV 141
+ T ++++S C L G+++H V+K+G+ V + L+ Y + EA++V
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 142 FDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKA 201
F +M KD V WT +ISGY K+ +KA
Sbjct: 346 FS-------------------------------RMETKDAVSWTAMISGYEKNGLP-DKA 373
Query: 202 LKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIE 261
L+ + M + P+E T SV+ ACA LG G +H L + G + ALIE
Sbjct: 374 LETYALMEQDNV-SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432
Query: 262 FYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSM 321
Y C+ I+ A +F+ + E + IS+ S+
Sbjct: 433 MYSKCK-------------------------------CIDKALEVFHNIPEKDVISWTSI 461
Query: 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEK 381
I G ++ +R +L ++ ++ N VT + +S
Sbjct: 462 IAGL--------------RLNNRCFEALIFFRQMLLTLKPNSVTLIAALS---------- 497
Query: 382 ALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441
AC+ +G+L G+ +HAH+++T + ++ +L+D
Sbjct: 498 -------------------------ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532
Query: 442 MYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAAT 501
+Y RCG +N A F+S +V +W L+ GY HG GS AV LF M+E + P+ T
Sbjct: 533 LYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 502 FVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560
F+ +L AC R+G+V +G++ F SM+ Y + P L+HY CVVDLLGR+G L EA FI M
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 561 PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKM 620
PI D VWGALL+AC ++E+GE AAQ +F LD + Y++L N+YA GKW +
Sbjct: 652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711
Query: 621 DIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLE 667
+RK + + DPGCSW+E+ +VHAF +D ++P I LE
Sbjct: 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 2e-88
Identities = 168/608 (27%), Positives = 282/608 (46%), Gaps = 114/608 (18%)
Query: 64 KFDESLSLVSTMH-RSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVG 122
+ E+L L + L +T+ ++ C L S+ K ++ V SG+E +++
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161
Query: 123 SGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVV 182
+ +L + C + +A+R+FDE+ E N W ++ G V DA +
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV------DAGNYR--------- 206
Query: 183 VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHG 242
+A LFR M E G + TF ++RA A LG+ G+ +H
Sbjct: 207 -----------------EAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHC 248
Query: 243 LLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIED 302
++K G + + + C LI M
Sbjct: 249 CVLKT---------GVVGDTFVSC--------------------------ALIDM----- 268
Query: 303 AELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN 362
Y+ G ++D++ +F+ MP ++
Sbjct: 269 ----------------------YSKCGDIEDARCVFDGMPEKTT---------------- 290
Query: 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422
V WNSM++GY + E+AL LY MR + + TFS++ S L L+ + HA
Sbjct: 291 -VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 423 HLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSE 482
L++T F ++ T+LVD+YS+ G + DA+ F + N+ +W AL+ GY +HG G++
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTK 409
Query: 483 AVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM-KSYGVVPTLEHYTCVV 541
AV +FE M+ + + PN TF+ VLSAC +GL +G +IF+SM +++ + P HY C++
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 542 DLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601
+LLGR G L EA I+ P + +W ALL+AC N+E+G AA+K++G+ + ++
Sbjct: 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529
Query: 602 AYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNV 661
YV+L N+Y G+ + + + L + P C+WIE+ + H+F DR +P
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589
Query: 662 IYATLEHL 669
IY L+ L
Sbjct: 590 IYQKLDEL 597
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 5e-58
Identities = 137/492 (27%), Positives = 213/492 (43%), Gaps = 113/492 (22%)
Query: 30 RNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFST 89
R G+LV A +F +MP R + SWN ++ GY+K FDE+L L M + V+ + TF
Sbjct: 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192
Query: 90 ILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDN 149
+L C + L G+++H V++ G+E V + L+ Y C ++ A+ VFD
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD------ 246
Query: 150 ELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMR 209
+MP++D + W +ISGY ++ C + L+LF MR
Sbjct: 247 -------------------------RMPRRDCISWNAMISGYFEN-GECLEGLELFFTMR 280
Query: 210 ESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAF 269
E P+ T SVI AC LG G+ +HG ++K GF D S+ +LI+ Y
Sbjct: 281 EL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY------ 333
Query: 270 DGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYG 329
+S+G +AE +F+R
Sbjct: 334 -------------------------LSLGSWGEAEKVFSR-------------------- 348
Query: 330 QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTM 389
M + +S M ISGY +N L +KAL+ Y M
Sbjct: 349 -----------METKDAVSWTAM-----------------ISGYEKNGLPDKALETYALM 380
Query: 390 RKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449
+ + T + + AC+CLG L G LH + S V V +L++MYS+C I
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 450 NDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509
+ A F +I +V +WT+++ G + EA++ F ML + PN+ T + LSAC
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSAC 499
Query: 510 VRAGLVNEGMKI 521
R G + G +I
Sbjct: 500 ARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-43
Identities = 119/455 (26%), Positives = 192/455 (42%), Gaps = 95/455 (20%)
Query: 32 GQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTIL 91
G L+ AR LFD+MP R + SW T++ G + E+ +L M TF +L
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
Query: 92 SVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNEL 151
A L S G+Q+HC VLK+G FV L+ Y+ C +IE+A+ VFD
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG------- 284
Query: 152 LWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGC-EKALKLFRWMRE 210
MP+K V W +++GYA + G E+AL L+ MR+
Sbjct: 285 ------------------------MPEKTTVAWNSMLAGYA--LHGYSEEALCLYYEMRD 318
Query: 211 SGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFD 270
SG ++ +++TF +IR +RL K H LI+ GF D AL++ Y
Sbjct: 319 SGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS------ 371
Query: 271 GAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQ 330
GR+EDA +F+R+ N IS+N++I GY +G+
Sbjct: 372 -------------------------KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406
Query: 331 VDDSKRLFEKMPHRSIISLN-TMISVIPE----------------MERN------PVTWN 367
+ +FE+M + + T ++V+ M N + +
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466
Query: 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT 427
MI + L ++A Y +R+ T + ++ L AC +L+ G+L L
Sbjct: 467 CMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523
Query: 428 -PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS 461
P + N YV L+++Y+ G +A ++
Sbjct: 524 GPEKLNNYV--VLLNLYNSSGRQAEAAKVVETLKR 556
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 3e-36
Identities = 100/415 (24%), Positives = 189/415 (45%), Gaps = 58/415 (13%)
Query: 199 EKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGA 258
E+ALKL M+E +E + ++ R C A EG V + +G A
Sbjct: 68 EQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126
Query: 259 LIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRL-------- 310
++ + A V+ ++ L + N L+ G G ++A +++R+
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 311 ----------------------TEANSISY---------NSMIKGYAVYGQVDDSKRLFE 339
A+ + + N++I Y G V ++ +F+
Sbjct: 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 340 KMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS 399
+MP R IS WN+MISGY +N + L+L+ TMR+L++D
Sbjct: 247 RMPRRDCIS-----------------WNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSI 459
T + + AC LG + G+ +H ++VKT F +V V SL+ MY GS +A+ FS +
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 460 SSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGM 519
+ + +WTA+++GY +GL +A+ + +M + ++ P+ T VLSAC G ++ G+
Sbjct: 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLS 574
K+ + G++ + ++++ + + +A E ++P E D + W ++++
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIA 463
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 7e-31
Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 27/324 (8%)
Query: 260 IEFYCGCEAFDGAMRVYDRLENPC---LNAS--NSLINGLISMGRIEDAELIFNRLT--- 311
IE C A+ +++ LE C L AS ++L+ I++ I + ++ +
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 312 -EANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMI 370
E + N ++ + G + D++RLF++MP ERN +W ++I
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----------------ERNLASWGTII 196
Query: 371 SGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFE 430
G V + +A L+ M + D TF V+ A + LGS + GQ LH ++KT
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIM 490
+ +V +L+DMYS+CG I DA+ F + AW +++ GY+ HG EA+ L+ M
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
Query: 491 LEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550
+ + + TF ++ R L+ + + G + T +VDL + G +
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
Query: 551 HEAEEFIKDMPIELDAVVWGALLS 574
+A MP + + + W AL++
Sbjct: 377 EDARNVFDRMPRK-NLISWNALIA 399
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-26
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 18/258 (6%)
Query: 319 NSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNL 378
N+M+ + +G++ + +F KMP ER+ +WN ++ GY +
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMP-----------------ERDLFSWNVLVGGYAKAGY 167
Query: 379 HEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTS 438
++AL LY M + TF + C + L +G+ +HAH+V+ FE +V V +
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN 498
L+ MY +CG + A+ F + + +W A+++GY +G E + LF M E + P+
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIK 558
T V+SAC G G ++ + G + ++ + G EAE+
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 559 DMPIELDAVVWGALLSAC 576
M + DAV W A++S
Sbjct: 348 RMETK-DAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 5e-11
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 1/208 (0%)
Query: 367 NSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVK 426
NS + + E+AL+L +M++L + + LF C ++++G + + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 427 TPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLL 486
+ V +G +++ M+ R G + A F + ++ +W L+ GY+ G EA+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 487 FEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR 546
+ ML + P+ TF VL C + G ++ + +G ++ ++ + +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 547 SGHLHEAEEFIKDMPIELDAVVWGALLS 574
G + A MP D + W A++S
Sbjct: 235 CGDVVSARLVFDRMPRR-DCISWNAMIS 261
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 5e-09
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAC 408
+ VT+N++I GY + E+AL+L+ M+K I T+S+L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 8e-09
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 179 KDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACAR 230
DVV + LI GY K E+ALKLF M++ G PN YT+ +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGK-VEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR 511
P+V + L++GY G EA+ LF M ++ I PN T+ ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 52/325 (16%)
Query: 262 FYCGCE---AFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDA----ELIFNRLTEAN 314
F+ C+ A A R + NP L+ N L++ S I+ A L+ +A+
Sbjct: 412 FFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 315 SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYV 374
Y ++I A G+VD +F +M V +E N T+ ++I G
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEM-------------VNAGVEANVHTFGALIDGCA 518
Query: 375 QNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVY 434
+ KA Y MR + R F+ L AC G++ + F+
Sbjct: 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA-----------FDV--- 564
Query: 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD 494
L +M + I+ P+ ALM ++ G A +++++ E +
Sbjct: 565 ----LAEMKAETHPID-----------PDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 495 IVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554
I + +++C + G + + I+ MK GV P ++ +VD+ G +G L +A
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 555 EFIKDMP---IELDAVVWGALLSAC 576
E ++D I+L V + +L+ AC
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 71/350 (20%), Positives = 137/350 (39%), Gaps = 70/350 (20%)
Query: 264 CGCEAFDGAMRVYDRLENPCLNASNSLINGLISM----GRIEDAELIFNRLT----EANS 315
+ DGA+RV ++ L A L LIS G+++ +F+ + EAN
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
Query: 316 ISYNSMIKGYAVYGQVDDSKRLFEKM------PHRSIISLNTMIS-------------VI 356
++ ++I G A GQV + + M P R + N +IS V+
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV--FNALISACGQSGAVDRAFDVL 565
Query: 357 PEM--ERNP-----VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACS 409
EM E +P +T +++ ++A ++Y + + I T +++ ++CS
Sbjct: 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTA 469
Q+G A + DM + G D + FS A
Sbjct: 626 -----QKGDWDFALSIYD-------------DM-KKKGVKPD-EVFFS-----------A 654
Query: 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYG 529
L++ H G +A + + +Q I ++ ++ AC A + ++++ +KS
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 530 VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP---IELDAVVWGALLSAC 576
+ PT+ ++ L L +A E + +M + + + + LL A
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 49 VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQ 96
VV++NT++ GY K K +E+L L + M + +K N T+S ++ +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 288 NSLINGLISMGRIEDAELIFNRLTEA----NSISYNSMIKGYA 326
N+LI+G G++E+A +FN + + N +Y+ +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 13/60 (21%)
Query: 314 NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGY 373
+ ++YN++I GY G+V+++ +LF +M R I + N T++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-------------KPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 88/384 (22%), Positives = 142/384 (36%), Gaps = 72/384 (18%)
Query: 178 KKDVVVWTKLISGYAKS--VDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFC 235
K D ++T LIS AKS VD ++F M +G N +TF ++I CAR G
Sbjct: 469 KADCKLYTTLISTCAKSGKVDA---MFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVA 524
Query: 236 EGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAM-RVYDRLENPCLNASNSLINGL 294
+ +G++ + D + ALI CG GA+ R +D L + A I
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALIS-ACGQS---GAVDRAFDVLAE--MKAETHPI--- 575
Query: 295 ISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMIS 354
+ + I+ +++K A GQVD +K ++ +M H I
Sbjct: 576 -----------------DPDHITVGALMKACANAGQVDRAKEVY-QMIHEYNI------- 610
Query: 355 VIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSL 414
+ P + ++ Q + AL +Y M+K + FS L
Sbjct: 611 -----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG----- 660
Query: 415 QQGQLLHAHLVKTPFE-------SNVYVGT----SLVDMYSRCGSINDAQASFSSISS-- 461
HA + FE + +GT SL+ S + A + I S
Sbjct: 661 ------HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 462 --PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGM 519
P V+ AL+ +A+ + M + PN T+ +L A R + G+
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 520 KIFRSMKSYGVVPTLEHYTCVVDL 543
+ K G+ P L C+ L
Sbjct: 775 DLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 364 VTWNSMISGYVQNNLHEKALQLYMTMRK 391
VT+NS+ISGY + E+AL+L+ M++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 497 PNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542
P+ T+ ++ + G V E +K+F MK G+ P + Y+ ++D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE 84
V++NT++ G K + +E+L L M ++ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 76/344 (22%), Positives = 151/344 (43%), Gaps = 37/344 (10%)
Query: 85 TTFSTILSVCAQLNSLIDG-KQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFD 143
+TF+ ++SVCA IDG ++ LV ++G + + + L+ A +++ VF
Sbjct: 438 STFNMLMSVCASSQD-IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496
Query: 144 ELH----EDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDV----VVWTKLIS--GYAK 193
E+ E N + ++ G + ++ AF + M K+V VV+ LIS G +
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556
Query: 194 SVDGCEKALKLFRWMR-ESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFD 252
+VD +A + M+ E+ P+ T ++++ACA G K V+ ++ + +
Sbjct: 557 AVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 253 ESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISM-GRIEDAELIFNRLT 311
+ + +D A+ +YD ++ + + L+ + G D + F L
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 312 EANS-------ISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV 364
+A +SY+S++ + + L+E + +S I L +S
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI--KS-IKLRPTVS---------- 720
Query: 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAC 408
T N++I+ + N KAL++ M++L + T+S+L A
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 316 ISYNSMIKGYAVYGQVDDSKRLFEKMPHRSI 346
++YNS+I GY G+++++ LF++M + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT 533
T+ ++ +AG V E +++F+ MK G+ P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 364 VTWNSMISGYVQNNLHEKALQLYMTMRK 391
VT+N++I G + E+AL+L+ M++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKE 28
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA 499
+ L++G G EA+ LF+ M E+ I P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 680 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.2 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.17 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.15 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.11 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.04 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.03 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.01 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.01 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.58 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.58 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.58 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.31 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.24 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.08 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.05 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.94 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.85 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.85 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.84 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.74 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.72 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.72 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.68 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.54 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.53 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.51 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.5 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.46 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.43 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.41 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.38 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.38 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.35 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.28 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.26 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.24 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.18 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.15 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.11 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.11 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.08 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.08 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.04 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.99 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.97 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.95 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.93 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.9 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.86 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.78 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.68 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.67 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.64 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.63 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.59 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.45 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.29 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.24 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.22 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.21 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.01 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.98 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.94 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.88 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.66 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.55 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.5 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.36 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.33 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.25 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.21 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.15 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.06 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.06 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.01 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.93 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.92 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.85 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.8 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.57 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.21 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.1 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.02 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.99 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.8 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.78 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.46 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.44 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.32 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.21 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.16 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.13 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.04 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.99 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.9 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.54 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.22 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.1 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.09 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.79 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.67 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.42 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.3 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.25 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.11 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.48 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.41 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.4 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.37 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.16 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.0 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.88 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.83 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.76 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 89.74 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.54 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.53 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.22 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.16 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.85 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.66 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.64 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.39 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.14 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.45 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.35 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.35 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.28 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 87.25 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.71 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.6 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.28 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.22 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.85 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.81 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.69 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.45 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.22 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.9 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.66 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.58 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.45 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.96 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 83.45 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.34 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.22 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.02 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 82.72 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.65 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.52 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.48 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.39 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.06 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.94 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.56 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.34 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.45 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.2 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.18 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-90 Score=768.72 Aligned_cols=637 Identities=31% Similarity=0.570 Sum_probs=619.9
Q ss_pred ccCccchhhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 005732 14 QETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSV 93 (680)
Q Consensus 14 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~ 93 (680)
..|++.++|.+|.+|++.|+++.|.++|++|+.||..+||++|.+|++.|++++|+++|++|...|+.||..||++++++
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHh
Q 005732 94 CAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVF 173 (680)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 173 (680)
|+..+++..+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|..+|..+|+++|.+|++.|+.++|+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC----CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 005732 174 IKMP----KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGF 249 (680)
Q Consensus 174 ~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 249 (680)
++|. .||..+|+.++.+|.+.|+ .+.+.+++..|.+.|..| |..+|+.++.+|++.|++++|.++|+.|.
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~-~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---- 350 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGD-ERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME---- 350 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC----
Confidence 9985 6899999999999999999 899999999999999987 99999999999999999999999999985
Q ss_pred CCCchHHHHHHHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHH
Q 005732 250 EFDESIGGALIEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSM 321 (680)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l 321 (680)
.||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|+++.|.++++.+.+ ++..+|+.+
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5788999999999999999999999999996 78899999999999999999999999999987 889999999
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~-----------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE-----------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC-----------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 9999999999999999999964 5678999999999999999999999999986 699999999
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGS 481 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 481 (680)
+.++.+|++.|+.+.+.+++..+.+.|+.++..++++|+.+|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.+
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
+|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEE
Q 005732 561 PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWI 640 (680)
Q Consensus 561 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 640 (680)
+.+||..+|.+|+.+|..+|+.+.++...+++++++|+++..|..++++|...|+|++|.++.+.|+++|++++||+||+
T Consensus 652 ~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEecCCCCCCChhHHHHHHHHHHHHhhh
Q 005732 641 ELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLNS 675 (680)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (680)
++++.+|.|..+|.+||...+||.+|..+..+|++
T Consensus 732 e~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 732 EVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred EECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999975
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=625.88 Aligned_cols=517 Identities=32% Similarity=0.608 Sum_probs=501.5
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhH
Q 005732 47 RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSN-VKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 47 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (680)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHH
Q 005732 126 LFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLF 205 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 205 (680)
+.+|++.|++++|.++|++| ++||..+||.++.+|++.|+ +++|+++|
T Consensus 165 i~~y~k~g~~~~A~~lf~~m-------------------------------~~~~~~t~n~li~~~~~~g~-~~~A~~lf 212 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM-------------------------------PERNLASWGTIIGGLVDAGN-YREAFALF 212 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC-------------------------------CCCCeeeHHHHHHHHHHCcC-HHHHHHHH
Confidence 99999999999999999998 77899999999999999999 89999999
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccc
Q 005732 206 RWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLN 285 (680)
Q Consensus 206 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 285 (680)
++|.+.|+.| |..||+.++.+|+..|..+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.
T Consensus 213 ~~M~~~g~~p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----- 286 (697)
T PLN03081 213 REMWEDGSDA-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----- 286 (697)
T ss_pred HHHHHhCCCC-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----
Confidence 9999999987 9999999999999999999999999999999999999999999999999999999998888774
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhH
Q 005732 286 ASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVT 365 (680)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (680)
++|+++
T Consensus 287 --------------------------------------------------------------------------~~~~vt 292 (697)
T PLN03081 287 --------------------------------------------------------------------------EKTTVA 292 (697)
T ss_pred --------------------------------------------------------------------------CCChhH
Confidence 678899
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR 445 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (680)
||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|++|+..+++.|+.+|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 446 CGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 526 K-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 526 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
. +.|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|...|+++.|..+++++++.+|++...|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 8 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhhh
Q 005732 605 ILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLNS 675 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (680)
.++++|.+.|+|++|.+++++|+++|+++.||+||+++++.+|.|..+|..||...+||++|..+..++++
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-70 Score=610.16 Aligned_cols=586 Identities=17% Similarity=0.233 Sum_probs=537.6
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccC----CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQM----PIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTI 90 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l 90 (680)
+|+..+|..++.+|.+.+.++.|.+++..+ ..++...+|++|..|++.|+.+.|.++|++|. .||..+|+++
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~l 158 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVL 158 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHH
Confidence 344444444444444444444444444322 12455667888888999999999999999997 4788999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcC----CchhHHHHHHHHHHhcCCh
Q 005732 91 LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHE----DNELLWSLMLVGYVQCNLM 166 (680)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 166 (680)
|.+|++.|++++|.+++++|...|+.||..+|+.++.++...++++.+.+++..+.+ ++..+|+.++.+|++.|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 999999999999999999999999999999999999999999999999999988864 6888999999999999999
Q ss_pred hhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHH
Q 005732 167 SDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIK 246 (680)
Q Consensus 167 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 246 (680)
+.|.++|++|+.+|..+||.+|.+|++.|+ +++|+++|.+|.+.|+.| |..||+.++.+|++.|+.+.+.+++..|.+
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGE-CLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999 899999999999999997 999999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHH
Q 005732 247 CGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMI 322 (680)
Q Consensus 247 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll 322 (680)
.|+.||..+|+.|+.+|++.|++++|.++|++|..++..+|+.++.+|++.|++++|+++|++|.. ||..+|+.++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 999999999999999999999999999999999988899999999999999999999999999976 9999999999
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
.+|++.|+++.|.++++.+.+.|. .++..+|+.||.+|++.|++++|.++|++|. .+|..+|+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~-------------~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~ 459 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGL-------------ISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWT 459 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCC-------------CcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHH
Confidence 999999999999999999999996 8999999999999999999999999999995 47889999
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHHHHHHHHHHHHcC
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAAWTALMNGYSHHG 478 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~ 478 (680)
.++.+|++.|+.++|..+|++|.+ ++.||..+|+.++.+|++.|+++.+.+++..+.+ ++..++++|+.+|++.|
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 999999999999999999999986 5899999999999999999999999999988763 88999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005732 479 LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIK 558 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (680)
+.++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+
T Consensus 539 ~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 539 RMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred CHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 999999999987 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 559 DM----PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 559 ~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.| ++.|+..+|+.++.++.+.|++++|.++++++ ...|+ +.+|..|..+|...|+.+.+....+++.+..+
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 98 57899999999999999999999999999998 35665 47899999999999999999999998887543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=548.29 Aligned_cols=525 Identities=17% Similarity=0.212 Sum_probs=475.6
Q ss_pred ccCccchhhHHHHHhhcCCChhHHHHhhccCCCC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHH
Q 005732 14 QETLIVSTNKAITECGRNGQLVTARNLFDQMPIR-----TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFS 88 (680)
Q Consensus 14 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~ 88 (680)
..+++..|..++..|++.|++++|.++|++|+++ +...++.++.+|.+.|..++|+.+++.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3577888999999999999999999999999865 455677888899999999999999999974 9999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhc----CCchhHHHHHHHHHHhcC
Q 005732 89 TILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELH----EDNELLWSLMLVGYVQCN 164 (680)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~ 164 (680)
.+|.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 478999999999999999
Q ss_pred ChhhHHHHhccCC----CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCCCCCcchHHHHHHHHhccCChhhHH
Q 005732 165 LMSDAFDVFIKMP----KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRE--SGENMPNEYTFDSVIRACARLGAFCEGK 238 (680)
Q Consensus 165 ~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 238 (680)
++++|.++|++|. .||..+|+.+|.+|++.|+ +++|.++|++|.. .|+.| |..+|+++|.+|++.|++++|.
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~-~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA-VDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999995 6899999999999999999 9999999999986 56776 9999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--
Q 005732 239 VVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE-- 312 (680)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 312 (680)
++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|++++|.+++++|.+
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999998 68888999999999999999999999999987
Q ss_pred --CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005732 313 --ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMR 390 (680)
Q Consensus 313 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 390 (680)
||..+|+.++.+|++.|++++|.++|++|...++ .|+..+|+.||.+|++.|++++|.++|++|.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-------------~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-------------RPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999998885 8999999999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHH
Q 005732 391 KLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTAL 470 (680)
Q Consensus 391 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 470 (680)
..|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.++. +++++|.++.+.+.. |+.
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-----f~~- 818 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-----FDS- 818 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-----hhc-
Confidence 999999999999999999999999999999999999999999999999987644 245555554333221 110
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
.......+..+.|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+++++++++. .
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~ 896 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--D 896 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--h
Confidence 11111223346799999999999999999999999988889999999999999998888899999999999998432 4
Q ss_pred HHHHHHHHhC---CCCCCHH
Q 005732 551 HEAEEFIKDM---PIELDAV 567 (680)
Q Consensus 551 ~~A~~~~~~~---~~~p~~~ 567 (680)
++|..++++| ++.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 6899999998 5666653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=531.05 Aligned_cols=499 Identities=18% Similarity=0.228 Sum_probs=354.9
Q ss_pred chhhhhHHHHHHcCCChHHHHHHHhhhcCCc-----hhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHh
Q 005732 119 EFVGSGLLFFYANCFEIEEAKRVFDELHEDN-----ELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAK 193 (680)
Q Consensus 119 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 193 (680)
...|..++..+.+.|++++|.++|++|.+++ ...++.++..|.+.|.+++|..+|+.|..||..+|+.+|.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3344444444444455555555555544332 22233444445555555555555555566666666666666666
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHH
Q 005732 194 SVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAM 273 (680)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (680)
.|+ ++.|.++|++|.+.|+.| |..+|+.+|.+|++.|+++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 450 ~g~-~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 450 SQD-IDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred CcC-HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 666 666666666666666664 666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc------CChhHHHHHHHHHhccCChhhHHHHHhhcCc
Q 005732 274 RVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE------ANSISYNSMIKGYAVYGQVDDSKRLFEKMPH 343 (680)
Q Consensus 274 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 343 (680)
++|+.|. .|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666664 45566666666666666666666666666632 7777888888888888888888888888888
Q ss_pred CCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 005732 344 RSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 344 ~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 423 (680)
.++ +|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.
T Consensus 608 ~gi-------------~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 608 YNI-------------KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred cCC-------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 775 7788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005732 424 LVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS----SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA 499 (680)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 499 (680)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 8888888888888888888888888888888888774 478888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----c-------------------CChHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----S-------------------GHLHEAEEF 556 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~ 556 (680)
.||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 88888888888888888888888888888888888888887765432 1 123568888
Q ss_pred HHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHhhCCC
Q 005732 557 IKDM---PIELDAVVWGALLSACWFWMNMEVGERAAQKMFG-LDKKPISAYVILSNIYAVLGKW-GKKMDIRKRLTHLEV 631 (680)
Q Consensus 557 ~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~ 631 (680)
|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+..+|..+++.+ |++ ++|..++++|...|+
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCC
Confidence 8888 6888888888888776677788887777766532 2333446677888776 333 578888888888887
Q ss_pred ccCC
Q 005732 632 KKDP 635 (680)
Q Consensus 632 ~~~~ 635 (680)
.++.
T Consensus 912 ~p~~ 915 (1060)
T PLN03218 912 VPSV 915 (1060)
T ss_pred CCCc
Confidence 6654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=484.28 Aligned_cols=462 Identities=16% Similarity=0.237 Sum_probs=390.0
Q ss_pred CccchhhHHHHHhhcCCChhHHHHhhccCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 005732 16 TLIVSTNKAITECGRNGQLVTARNLFDQMP-----IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTI 90 (680)
Q Consensus 16 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l 90 (680)
++..+++.+|..|.+.|++++|.++|+.|. .||..+|+.++.+|++.++++.+..++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 355689999999999999999999999884 468999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHH
Q 005732 91 LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAF 170 (680)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 170 (680)
+..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g--------------------- 219 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG--------------------- 219 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---------------------
Confidence 999999999999999999985 5899999999999999999999999999996543
Q ss_pred HHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 005732 171 DVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFE 250 (680)
Q Consensus 171 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 250 (680)
..|+..+|+.++.++...+. .+.+.+++..+.+.|..| |..+|+.++.+|++.|++++|.++|+.|. +
T Consensus 220 ------~~p~~~t~~~ll~a~~~~~~-~~~~~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~ 287 (697)
T PLN03081 220 ------SDAEPRTFVVMLRASAGLGS-ARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP----E 287 (697)
T ss_pred ------CCCChhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 44566666666666666665 566666666666666554 66666666666666666666666666553 3
Q ss_pred CCchHHHHHHHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHH
Q 005732 251 FDESIGGALIEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMI 322 (680)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll 322 (680)
+|..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|++++|.+++..|.+ ||..+|+.++
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 455666666666666666666666666664 45555666666666666666666666666655 7888899999
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
.+|++.|++++|.++|++|.+ +|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~-----------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 430 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR-----------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC-----------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 999999999999999999864 678899999999999999999999999999999999999999
Q ss_pred HHHHHhcccCChHHHHHHHHHHHh-cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCh
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVK-TPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS-SPNVAAWTALMNGYSHHGLG 480 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 480 (680)
.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++. .|+..+|++|+.+|...|+.
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999986 5999999999999999999999999999999987 59999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 005732 481 SEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT 533 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (680)
+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+.|+...
T Consensus 511 ~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 511 ELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999999976 5565 67999999999999999999999999999887643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=345.11 Aligned_cols=580 Identities=12% Similarity=0.022 Sum_probs=354.1
Q ss_pred HHHHHhhcCCChhHHHHhhccCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 005732 23 KAITECGRNGQLVTARNLFDQMP---IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNS 99 (680)
Q Consensus 23 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 99 (680)
.+...+...|++++|...|++.. ..+...+..+...+.+.|++++|...++.+.... +.+...+..+...+...|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 33444455555555555555442 1233445555555566666666666666655442 2344455555555666666
Q ss_pred hHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC---chhHHHHHHHHHHhcCChhhHHHHhccC
Q 005732 100 LIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED---NELLWSLMLVGYVQCNLMSDAFDVFIKM 176 (680)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 176 (680)
++.|.++++.+.+... .+...+..+...+...|++++|.+.++...+. ....+..++..+.+.|++++|..+++++
T Consensus 379 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6666666666555432 23444555555666666666666666655432 2233445555666666666666666655
Q ss_pred C---CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc
Q 005732 177 P---KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDE 253 (680)
Q Consensus 177 ~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 253 (680)
. .++...|..+...+...|+ +++|.+.|+++.+.. |.+...+..+...+...|++++|...++.+.+.+ +.+.
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 4 2244456666666666666 666666666666543 2245555566666666666666666666666554 3345
Q ss_pred hHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhc
Q 005732 254 SIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAV 327 (680)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 327 (680)
.++..+...+.+.|+.++|...|+++. +.+...+..++..+...|++++|...++.+.. .+...|..+...+..
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 566666666666666666666666654 44445555666666666666666666666654 344566666666666
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHA 407 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 407 (680)
.|++++|...|+++.+.+ +.+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 614 ~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ--------------PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 667777766666666544 4455566666666666777777777776666532 2335566666666
Q ss_pred hcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHH
Q 005732 408 CSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVL 485 (680)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 485 (680)
+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++.+.|++++|.+
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHH
Confidence 666777777777776666655 45555666666666677777777777766542 444556666666677777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005732 486 LFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL 564 (680)
Q Consensus 486 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 564 (680)
.++++.+.. ..+...+..+...|...|++++|.++|+++.+.. +.+...++.+...+...|+ ++|+++++++ ...|
T Consensus 758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 777666643 2245566666666666777777777777776543 3456666666677777776 6677766665 2233
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 565 -DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
++..+..++..+...|++++|..+++++++.+|.++.++..++.++.+.|++++|.+++++|+
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 455556666666677777777777777777777766777777777777777777777777664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=335.50 Aligned_cols=593 Identities=12% Similarity=0.060 Sum_probs=401.2
Q ss_pred cccCccchhhHHHHHhhcCCChhHHHHhhccCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 005732 13 TQETLIVSTNKAITECGRNGQLVTARNLFDQMPI--R-TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFST 89 (680)
Q Consensus 13 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ 89 (680)
..+.++.++..++..+...|++++|...++.+.+ | +...+......+...|++++|...|+.+.+.+.. +...+..
T Consensus 222 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~ 300 (899)
T TIGR02917 222 LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLL 300 (899)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHH
Confidence 3456677788888888888888888888877632 2 2223333333445566677777777666654311 1222223
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC---chhHHHHHHHHHHhcCCh
Q 005732 90 ILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED---NELLWSLMLVGYVQCNLM 166 (680)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 166 (680)
+...+...|+++.|...++.+.+... .+...+..+...+.+.|++++|...++.+... +...+..+...+.+.|++
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 33344455666666666665555432 23344444555555555555555555554332 233445555555555555
Q ss_pred hhHHHHhccCCC--C-CeeeHH----------------------------------HHHHHHHhCCCChHHHHHHHHHHH
Q 005732 167 SDAFDVFIKMPK--K-DVVVWT----------------------------------KLISGYAKSVDGCEKALKLFRWMR 209 (680)
Q Consensus 167 ~~A~~~~~~~~~--~-~~~~~~----------------------------------~ll~~~~~~~~~~~~a~~~~~~m~ 209 (680)
++|.++|+++.. | +...+. .++..+.+.|+ +++|.++++.+.
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~ 458 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ-FDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 555555554331 1 222233 33444444455 455555555554
Q ss_pred HcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccch
Q 005732 210 ESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNA 286 (680)
Q Consensus 210 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 286 (680)
... |++..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+.+. +.+...
T Consensus 459 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 459 KKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 432 2245556666666666666666666666665543 2334455555666666666666666666654 444455
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh
Q 005732 287 SNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP 363 (680)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 363 (680)
+..+...+...|+.++|...++++.. .+...+..++..+...|++++|..+++.+.+.. +.+.
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~ 601 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------------PDSP 601 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------------CCCH
Confidence 55666666666666666666666644 233455566666666666666666666665544 5667
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMY 443 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (680)
..|..++.++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 788888888888888888888888887643 3345567778888888888888888888888765 56677888888888
Q ss_pred HhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005732 444 SRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMK 520 (680)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 520 (680)
...|++++|.++++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|.+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888887764 45667788888888999999999999998884 4555777778888899999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 521 IFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
.++.+.+.. +.+...+..+...|...|++++|.+.|+++ . .++++..+..++..+...|+ .+|+.+++++++..|+
T Consensus 758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 999888654 446788888889999999999999999987 2 34578888999999999999 8899999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
++..+..++.++...|++++|.++++++.+.++
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999988664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-26 Score=262.58 Aligned_cols=594 Identities=10% Similarity=-0.002 Sum_probs=421.1
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccCC--CCCh-hhH----------------HHHHHHHHcCCChhHHHHHHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQMP--IRTV-VSW----------------NTMLCGYSKWAKFDESLSLVSTM 75 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~-~~~----------------~~ll~~~~~~~~~~~a~~~~~~m 75 (680)
+.|+.++..++..+.+.|+.++|.+.+++.. .|+. ..+ ..+...+...|++++|+..|+.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566667777888888888888888888764 2322 211 22234567778888888888888
Q ss_pred HhCCCCCCHh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCch----
Q 005732 76 HRSNVKLNET-TFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNE---- 150 (680)
Q Consensus 76 ~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---- 150 (680)
.+.+ +|+.. ............|+.++|.+.++.+++..+ .+...+..+..++...|+.++|+..++++.....
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 7642 23322 111111222345788888888888877753 3556677788888888888888888887654221
Q ss_pred --hHHHH-----------------HHHHHHhcCChhhHHHHhccCCC--CCeee-HHHHHHHHHhCCCChHHHHHHHHHH
Q 005732 151 --LLWSL-----------------MLVGYVQCNLMSDAFDVFIKMPK--KDVVV-WTKLISGYAKSVDGCEKALKLFRWM 208 (680)
Q Consensus 151 --~~~~~-----------------l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~m 208 (680)
..|.. .+..+-.....+.|...+.+... .|+.. .......+...|+ +++|+..|++.
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~-~~~A~~~l~~a 295 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ-GGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC-HHHHHHHHHHH
Confidence 11111 11111111223344444433221 11111 1223445667788 89999999999
Q ss_pred HHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCc-hHH------------HHHHHHhhcCCCHHHHHHH
Q 005732 209 RESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDE-SIG------------GALIEFYCGCEAFDGAMRV 275 (680)
Q Consensus 209 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~li~~~~~~g~~~~A~~~ 275 (680)
.+.. |.+...+..+..++.+.|++++|...++..++....... ..+ ......+.+.|++++|...
T Consensus 296 L~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 296 VRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8865 337888899999999999999999999998876532211 111 1224567789999999999
Q ss_pred HhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchh
Q 005732 276 YDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISL 349 (680)
Q Consensus 276 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 349 (680)
|+++. |.+...+..+...+...|++++|++.|++... |+ ...+..+...+. .++.++|...++.+........
T Consensus 374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 99887 55566677788999999999999999999887 33 445666666664 4678999988887654321000
Q ss_pred hhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHhcC
Q 005732 350 NTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
.... .......+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...++.+.+..
T Consensus 453 ~~~~-----~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 453 DDIE-----RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHH-----HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0000 0011234566778889999999999999999885 34 45567788889999999999999999998765
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC----CH---------HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005732 429 FESNVYVGTSLVDMYSRCGSINDAQASFSSISSP----NV---------AAWTALMNGYSHHGLGSEAVLLFEIMLEQDI 495 (680)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 495 (680)
+.++..+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|+.+++. .
T Consensus 526 -P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 526 -PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 455666666666778899999999999988641 11 1223456678899999999999872 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALL 573 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 573 (680)
.++...+..+...+.+.|++++|++.|+++.... +.+...+..++..|...|++++|++.++.. ...| +...+..+.
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3455667778889999999999999999999764 346788889999999999999999999987 3444 566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPIS------AYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.++...|++++|.++++++++..|+++. .+..++.++...|++++|++.+++...
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888999999999999999998776543 566779999999999999999999864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-27 Score=267.88 Aligned_cols=584 Identities=11% Similarity=0.050 Sum_probs=439.7
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCC--CC-ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhH----------
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMP--IR-TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTF---------- 87 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~---------- 87 (680)
.-..++.+...++.+.|.+.++++. .| |...+..++..+.+.|+.++|...+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 3445567778999999999999864 33 67889999999999999999999999998864 443322
Q ss_pred -------HHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC---chhHHHHHH
Q 005732 88 -------STILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED---NELLWSLML 157 (680)
Q Consensus 88 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~ 157 (680)
....+.+...|++++|.+.++.+.+...+........+.......|+.++|.+.++++.+. +...+..+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2233457788999999999999987653322222222222333469999999999998864 455788899
Q ss_pred HHHHhcCChhhHHHHhccCCCCCee------eH-----------------HHHHHHHHhCCCChHHHHHHHHHHHHcCCC
Q 005732 158 VGYVQCNLMSDAFDVFIKMPKKDVV------VW-----------------TKLISGYAKSVDGCEKALKLFRWMRESGEN 214 (680)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~~~~~~~~------~~-----------------~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (680)
..+...|+.++|++.++++...... .| ...+..+-.... .+.+...+.++......
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~-~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS-VAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH-HHHHHHHHHHHHHhccC
Confidence 9999999999999999987532111 01 111111111111 34455555555443322
Q ss_pred CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--CC-ccc--hh--
Q 005732 215 MPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE--NP-CLN--AS-- 287 (680)
Q Consensus 215 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~--~~-- 287 (680)
| +.. .......+...|++++|...++..++.. +.+...+..+...|.+.|++++|+..|++.. .| +.. .+
T Consensus 268 p-~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 268 P-AFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred c-chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 2 211 1233556778999999999999999875 4467889999999999999999999999877 22 211 11
Q ss_pred ----------hHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhh
Q 005732 288 ----------NSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMIS 354 (680)
Q Consensus 288 ----------~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 354 (680)
......+.+.|++++|+..|++... .+...+..+...+...|++++|++.|+++.+.+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--------- 415 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--------- 415 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------
Confidence 1224567789999999999999988 345577888999999999999999999999876
Q ss_pred hcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--------CChhhHHHHHHHhcccCChHHHHHHHHHHHh
Q 005732 355 VIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID--------RTRSTFSVLFHACSCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 426 (680)
+.+...+..+...|. .++.++|+.+++.+...... .....+..+...+...|++++|...+++..+
T Consensus 416 -----p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 416 -----PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred -----CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566777777777775 46789999988765332100 0112345566778889999999999999998
Q ss_pred cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---
Q 005732 427 TPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA--- 500 (680)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--- 500 (680)
.. +.++..+..+...|.+.|++++|...++++.+ .+...+..+...+...++.++|+..++.+......++..
T Consensus 490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 86 66778888999999999999999999998753 355556566666778999999999998865433222221
Q ss_pred ------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005732 501 ------TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGAL 572 (680)
Q Consensus 501 ------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 572 (680)
.+..+...+...|+.++|.++++. .+.+...+..+...+.+.|++++|++.+++. ...| ++..+..+
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~l 643 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGL 643 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 123456678889999999999872 3456667788999999999999999999988 4455 68889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+..+...|++++|+..++++.+..|+++..+..++.++...|++++|.++++++.....
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999999999999999999999999999999999999999999999999999987643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-23 Score=224.11 Aligned_cols=606 Identities=10% Similarity=-0.025 Sum_probs=411.7
Q ss_pred HhhhhcccCccchhhHHHHHhhcCCChhHHHHhhccCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHh
Q 005732 8 SQTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMP--IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNET 85 (680)
Q Consensus 8 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 85 (680)
.+.+...|-++.++..+.++|.+.|++++|+..+++.. .|+-..|..++..+ +++.+|..+|+++.+.. +-+..
T Consensus 68 ~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~ 143 (987)
T PRK09782 68 EYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDA 143 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChh
Confidence 34445556677788999999999999999999998875 34333343334333 88889999999998863 22344
Q ss_pred hHHHHHHHH-----hccCChHHHHHHHHHHHHhCCCCcchhhhhH-HHHHHcCCChHHHHHHHhhhcCCc---hhHHHHH
Q 005732 86 TFSTILSVC-----AQLNSLIDGKQIHCLVLKSGYECFEFVGSGL-LFFYANCFEIEEAKRVFDELHEDN---ELLWSLM 156 (680)
Q Consensus 86 t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l 156 (680)
.+..+.... .+-...+.|.+.++ .......|.+.+.... ..+|...|++++|+..+.++.+.+ ......+
T Consensus 144 ~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L 222 (987)
T PRK09782 144 VPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQW 222 (987)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 444444430 11223466666666 4334445556555555 889999999999999999988653 3346666
Q ss_pred HHHHHh-cCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHH--------
Q 005732 157 LVGYVQ-CNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRA-------- 227 (680)
Q Consensus 157 ~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~-------- 227 (680)
..+|.+ .++ +.|..+++...+.++..+..+...+.+.|+ .++|.+++.++......-|...++..++.-
T Consensus 223 ~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~-~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~ 300 (987)
T PRK09782 223 FDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGE-KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQA 300 (987)
T ss_pred HHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCC-HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhh
Confidence 677777 366 888888776556678888899999999999 799999999886654432244443333222
Q ss_pred ----------------------HhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhh--cCCCHHHHHHHHhhcC---
Q 005732 228 ----------------------CARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYC--GCEAFDGAMRVYDRLE--- 280 (680)
Q Consensus 228 ----------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~--- 280 (680)
+.+.++++.++++. ...|.... ..++.+. ..+...++...++.+-
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~ 372 (987)
T PRK09782 301 LANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE 372 (987)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC
Confidence 22222222222110 12222221 1222111 1233444444444433
Q ss_pred CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc------CChhHHHHHHHHHhccCCh---hhHHHHHhhcCcCCc-----
Q 005732 281 NPCLNASNSLINGLISMGRIEDAELIFNRLTE------ANSISYNSMIKGYAVYGQV---DDSKRLFEKMPHRSI----- 346 (680)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~----- 346 (680)
+.+......+.--.++.|+.++|..+|+.... .+.....-++..|.+.+.. ..+..+...+...+-
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 22334444445556677888888888888766 2222333666777776663 333333211111100
Q ss_pred ------chhhhHhhhcccCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHH
Q 005732 347 ------ISLNTMISVIPEMER--NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQ 418 (680)
Q Consensus 347 ------~~~~~l~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 418 (680)
.....+...+...++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 011111122222355 77888888888877 8899999988888764 466555444555567899999999
Q ss_pred HHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005732 419 LLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPN---VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI 495 (680)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 495 (680)
..++.+... +|+...+..+...+.+.|+.++|.+.++...+.+ ...+..+.......|++++|+..+++..+ .
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l 605 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--I 605 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--h
Confidence 999987665 3444455677788899999999999998877532 22333333444556999999999999998 5
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALL 573 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 573 (680)
.|+...+..+...+.+.|++++|+..+++..... +.+...+..+..++...|++++|++.+++. ...| ++..+..+.
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6788889999999999999999999999999764 336778888999999999999999999987 4555 688889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPG 636 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 636 (680)
.++...|++++|+..++++++++|+++.+....+++..+..+++.|.+-+++....++....|
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~ 747 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIG 747 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchhc
Confidence 999999999999999999999999999999999999999999999999998887765544433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-24 Score=202.72 Aligned_cols=446 Identities=13% Similarity=0.073 Sum_probs=342.6
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCC--CCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhcc
Q 005732 154 SLMLVGYVQCNLMSDAFDVFIKMPK--KDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARL 231 (680)
Q Consensus 154 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 231 (680)
..+..-..+.|++++|++--..+-. |....-..++.+-..++.++++....-....+.. |--.++|+.+.+.+...
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHh
Confidence 3444445556666666665544432 2211222233332223332455444333333332 22567788888888888
Q ss_pred CChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHH
Q 005732 232 GAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFN 308 (680)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 308 (680)
|+++.|...+..+++.. +..+..|..+..++...|+.+.|...|.... |........+...+-..|+.++|...|.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 88888888888887764 3356677778888888888888888877766 3233333445555666788888888877
Q ss_pred Hhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHH
Q 005732 309 RLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQL 385 (680)
Q Consensus 309 ~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 385 (680)
+..+ |. ...|+.|...+-..|+...|++.|++..+.+ +.-...|-.|...|...+.+++|+..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--------------P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--------------PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--------------CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 7766 43 3478888888889999999999999998876 55677888999999999999999999
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 005732 386 YMTMRKLAIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--- 461 (680)
Q Consensus 386 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 461 (680)
|.+... ..|+ ...+..+...|-..|.++.|+..+++.++.. +.-+..|+.|..++...|++.+|++.+++...
T Consensus 275 Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 275 YLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 988876 4454 4567777788889999999999999998876 55677899999999999999999999998774
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYTC 539 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 539 (680)
....+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|+..+++..+ +.|+ ...|+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 4466888899999999999999999999988 7777 66788999999999999999999999987 5565 678899
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (680)
+...|...|+.+.|.+.+.+. .+.|. ....+.|...+...|++.+|++.|+.++++.|+.+.++-.++..+.--.+|.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 999999999999999999987 56675 6788999999999999999999999999999999999999999888777776
Q ss_pred HHHHHH
Q 005732 618 KKMDIR 623 (680)
Q Consensus 618 ~A~~~~ 623 (680)
+-.+-+
T Consensus 508 D~d~~~ 513 (966)
T KOG4626|consen 508 DYDKRM 513 (966)
T ss_pred chHHHH
Confidence 633333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-21 Score=210.50 Aligned_cols=292 Identities=10% Similarity=0.002 Sum_probs=217.7
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcC-CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCC---hHHHHHH----------
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHR-SIISLNTMISVIPEMERNPVTWNSMISGYVQNNL---HEKALQL---------- 385 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~---------- 385 (680)
-+.-...+.|+.++|.++|+..... +- ...+.....-++..|.+.+. ..++..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGD------------ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcc------------cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 3334456778889999998887762 11 02233344455666666554 2333222
Q ss_pred ------------HHHHHH-CCCCC---ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCCh
Q 005732 386 ------------YMTMRK-LAIDR---TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449 (680)
Q Consensus 386 ------------~~~m~~-~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (680)
+..... .+..| +...+..+..++.. ++.++|...+....... |+......+...+...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCH
Confidence 111211 11223 45566666666665 88888999888777664 4444444455556789999
Q ss_pred HHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 450 NDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 450 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
++|...|+++.. |+...+..+..++.+.|+.++|...+++..+.+ |+ ...+..+.......|++++|...+++..
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999997764 555567777888899999999999999999854 44 3333344445556799999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 527 SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
... |+...+..+..++.+.|++++|++.+++. ...| ++..+..+..++...|+.++|+..++++++..|+++.++.
T Consensus 604 ~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 604 NIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred HhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 754 46788999999999999999999999988 4556 5778888888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 605 ILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.++.++...|++++|...+++..+..
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999998754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-23 Score=195.85 Aligned_cols=423 Identities=14% Similarity=0.127 Sum_probs=354.0
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
-..|..-..+.|+ +++|.+.-...-..+.. +......+-..+.+..+.+....--....+.. +--..+|..+.+.+
T Consensus 51 ~l~lah~~yq~gd-~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGD-YKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccC-HHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 4455566677888 99999887666554422 44444445555666666666555444444432 33467899999999
Q ss_pred hcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CChhH-HHHHHHHHhccCChhhHHHH
Q 005732 264 CGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--ANSIS-YNSMIKGYAVYGQVDDSKRL 337 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~ 337 (680)
...|++++|+..++.+. +..+..|..+..++...|+.+.|.+.|.+..+ |+... .+.+...+...|+.++|...
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999987 67778899999999999999999999999888 54443 34455566678999999999
Q ss_pred HhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccCChHH
Q 005732 338 FEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT-RSTFSVLFHACSCLGSLQQ 416 (680)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 416 (680)
+.+..... +--.+.|+.|...+..+|+...|+..|++..+ +.|+ ...|..+...|...+.++.
T Consensus 207 YlkAi~~q--------------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 207 YLKAIETQ--------------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHHhhC--------------CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 99888765 45577899999999999999999999999987 5565 3578899999999999999
Q ss_pred HHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005732 417 GQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQ 493 (680)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 493 (680)
|...+.+..... +.....+..+...|-..|.++-|+..+++..+ |+ ...|+.|..++...|+..+|+..|.+...
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 999999988775 66677888888899999999999999999875 44 56899999999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHH
Q 005732 494 DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVW 569 (680)
Q Consensus 494 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 569 (680)
+.|+ ....+.|...+...|.+++|..+|....+. .|. ...++.|...|.+.|++++|+..+++. .++|+ ...+
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 5566 678889999999999999999999998864 333 567889999999999999999999987 78886 7789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+.++..|...|+...|.+.+.+++..+|.-++++..|+.+|..+|+..+|+.-+++.++..+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999887543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-19 Score=177.62 Aligned_cols=547 Identities=11% Similarity=0.049 Sum_probs=401.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh--ccCChHHHHHHHHHHHHhC--CCCcchhhhhHHHHHHcCCChHHHH
Q 005732 64 KFDESLSLVSTMHRSNVKLNETTFSTILSVCA--QLNSLIDGKQIHCLVLKSG--YECFEFVGSGLLFFYANCFEIEEAK 139 (680)
Q Consensus 64 ~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 139 (680)
+++.|...|....+.. ++|. ...+.++|. ..+++..|..+|..++... ..||+.+ .+..++.+.|+.+.|+
T Consensus 145 ~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKAL 219 (1018)
T ss_pred cHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHH
Confidence 3689999999988762 2333 333455554 4679999999999987765 3455543 4557788999999999
Q ss_pred HHHhhhcCCchhHHHHHHH------HHHhcCChhhHHHHhccCC---CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005732 140 RVFDELHEDNELLWSLMLV------GYVQCNLMSDAFDVFIKMP---KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRE 210 (680)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 210 (680)
..|....+-|+..-.+++. .+-....++.++.++...- ..+++..+.|-..|.-.++ ++.++.+...+..
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHH
Confidence 9999988776644333322 1122345566777766543 4578889999999999999 8999999999876
Q ss_pred cCCCC-CCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccch
Q 005732 211 SGENM-PNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNA 286 (680)
Q Consensus 211 ~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 286 (680)
....- --...|-.+.+++-..|++++|...|-...+.....-...+--|..+|...|+++.+...|+.+. |+...+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 54221 12345888999999999999999999887766422223445567889999999999999999988 666667
Q ss_pred hhHHHHHHHhcC----CHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcC----cCCcchhhhHhhh
Q 005732 287 SNSLINGLISMG----RIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMP----HRSIISLNTMISV 355 (680)
Q Consensus 287 ~~~l~~~~~~~g----~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~ 355 (680)
...+...|...+ ..+.|..++.+... .|...|-.+...+-...-+.. ...|..+. ..+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~---------- 447 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG---------- 447 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC----------
Confidence 666677777665 56777777777776 456677777777766554433 55444433 222
Q ss_pred cccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCh------hhHHHHHHHhcccCChHHHHHHHHHHHh
Q 005732 356 IPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL---AIDRTR------STFSVLFHACSCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 426 (680)
.++.+...|.+...+...|++++|...|...... ...++. .+--.+....-..++.+.|.+.|..+.+
T Consensus 448 ---~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 448 ---KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred ---CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2466788999999999999999999999998764 122333 2333345555667899999999999998
Q ss_pred cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHH
Q 005732 427 TPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-DIVPNAATF 502 (680)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~ 502 (680)
.. +.-+..|-.++.+....+...+|...++.+.. .++..+..+...+.....+..|.+-|....+. ...+|..+.
T Consensus 525 eh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 525 EH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 75 44444555555444456788899999988764 66778888888888888888888877666543 223677777
Q ss_pred HHHHHHHhc------------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHH
Q 005732 503 VGVLSACVR------------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVV 568 (680)
Q Consensus 503 ~~ll~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 568 (680)
..|...|.. .+..++|+++|.++.+.. +.+...-|.+.-+++..|++.+|..+|.+.. ......+
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv 682 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV 682 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce
Confidence 777775543 345788999999888765 3467777788888999999999999999883 3345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCC--CCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLD--KKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
|..++.+|...|++..|+++|+..++.. .+++.....|++++.+.|++.+|.+.+.......+.
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999999998854 335677889999999999999999999888765443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-19 Score=189.90 Aligned_cols=420 Identities=12% Similarity=0.031 Sum_probs=273.2
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhh
Q 005732 185 TKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYC 264 (680)
Q Consensus 185 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (680)
......+.+.|+ +++|+..|++.++.. | +...|..+..++.+.|++++|...++..++.. +.+...+..+..+|.
T Consensus 131 k~~G~~~~~~~~-~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 131 KEKGNKAYRNKD-FNKAIKLYSKAIECK--P-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344555666666 777777777766543 3 56667777777777777777777777776654 334556666777777
Q ss_pred cCCCHHHHHHHHhhcC--C-CccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhc
Q 005732 265 GCEAFDGAMRVYDRLE--N-PCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKM 341 (680)
Q Consensus 265 ~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 341 (680)
..|++++|...|..+. . ........++..+........+...++.-. ++...+..+.. +...........-+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 7777777776665443 1 111111111111111111112222221111 11112222222 21111111111111111
Q ss_pred CcCCcchhhhHhhhcccCCCChhHHHHHHHH---HHhCCChHHHHHHHHHHHHCC-CCCC-hhhHHHHHHHhcccCChHH
Q 005732 342 PHRSIISLNTMISVIPEMERNPVTWNSMISG---YVQNNLHEKALQLYMTMRKLA-IDRT-RSTFSVLFHACSCLGSLQQ 416 (680)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~ 416 (680)
.... +.....+..+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++
T Consensus 284 ~~~~--------------~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 284 NELD--------------EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred cccc--------------cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 1111 0011111111111 123467889999999988764 2343 3456777777788999999
Q ss_pred HHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005732 417 GQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ 493 (680)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 493 (680)
|...++..++.. +.....|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.
T Consensus 350 A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 350 ALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999988775 45566788888888999999999999987753 45778888999999999999999999999884
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHH--
Q 005732 494 DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVV-- 568 (680)
Q Consensus 494 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~-- 568 (680)
.|+ ...+..+...+.+.|++++|+..+++..... +.+...++.+..++...|++++|++.|++. ...|+ ...
T Consensus 429 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 429 --DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred --CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 454 6667778888899999999999999988643 345778888999999999999999999886 33332 111
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 569 -----WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 569 -----~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+...+..+...|++++|..+++++++++|++..++..++.++.+.|++++|++.+++..+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1111222334699999999999999999999888999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=189.21 Aligned_cols=298 Identities=12% Similarity=0.054 Sum_probs=227.4
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---h
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT---R 398 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~ 398 (680)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ .
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--------------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--------------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 334456677777777777777665 45566777777777777777777777777766432221 1
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC------HHHHHHH
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN------VAAWTAL 470 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l 470 (680)
..+..+...+...|+++.|..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345666777777777777777777777654 45666777777788888888888888777653 11 1245567
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
...+...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|.++++++...+.......+..++.+|.+.|+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 778889999999999999998843 44 567777888999999999999999999975444335678889999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh---cCCchHHHHHHHH
Q 005732 550 LHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV---LGKWGKKMDIRKR 625 (680)
Q Consensus 550 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 625 (680)
+++|.+.++++ ...|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+.. .|+.++|..++++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHH
Confidence 99999999987 4567777778888999999999999999999999999985 45555555443 5699999999999
Q ss_pred HhhCCCccCCce
Q 005732 626 LTHLEVKKDPGC 637 (680)
Q Consensus 626 ~~~~~~~~~~~~ 637 (680)
+.+++++++|.+
T Consensus 344 ~~~~~~~~~p~~ 355 (389)
T PRK11788 344 LVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHhCCCCE
Confidence 999999999974
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-18 Score=170.43 Aligned_cols=581 Identities=13% Similarity=0.028 Sum_probs=383.6
Q ss_pred hhHHHHhhccCCC--CChhhHHHHHHHH--HcCCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHhccCChHHHHHHH
Q 005732 34 LVTARNLFDQMPI--RTVVSWNTMLCGY--SKWAKFDESLSLVSTMHRSN--VKLNETTFSTILSVCAQLNSLIDGKQIH 107 (680)
Q Consensus 34 ~~~A~~~~~~~~~--~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~--~~~~~~t~~~ll~~~~~~~~~~~a~~~~ 107 (680)
.+.|...|..+.+ |+-+ .-.+..|+ ...+++..|+.+|....... .+||+. ..+-.++...++.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 4677777766542 2211 12233333 33567788888887765432 233332 12223445667777777777
Q ss_pred HHHHHhCCCCcchhhhhHHHHHHcCCC---hHHHHHHHhhhc---CCchhHHHHHHHHHHhcCChhhHHHHhccCCCCC-
Q 005732 108 CLVLKSGYECFEFVGSGLLFFYANCFE---IEEAKRVFDELH---EDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKD- 180 (680)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 180 (680)
....+..+ .++.++-.|.-.-....+ +..+..++...- ..|+...+.|...|.-.|++..+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 77776653 223333222222222222 333333333322 2467777777777777888877777776655322
Q ss_pred -----eeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchH
Q 005732 181 -----VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESI 255 (680)
Q Consensus 181 -----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 255 (680)
..+|-.+.+++-..|+ +++|...|.+..+....- ....+.-+...+...|+++.+...|+.+.+.. +.+..+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd-~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGD-FEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 2346667777777788 788888887776654221 13344557777888888888888888887763 444556
Q ss_pred HHHHHHHhhcCC----CHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--------CChhHHHH
Q 005732 256 GGALIEFYCGCE----AFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--------ANSISYNS 320 (680)
Q Consensus 256 ~~~li~~~~~~g----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ 320 (680)
...|...|...+ ..+.|..++.+.. +.+...|-.+...+....- ..++.+|..... +.+...|.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 666666666654 4566666666665 4444444444444444333 333555554442 66778899
Q ss_pred HHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh
Q 005732 321 MIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRST 400 (680)
Q Consensus 321 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 400 (680)
+...+...|+++.|...|......-....+.= .+..+++.+--.+..++-..++++.|.+.|..+... .|+-+.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d----e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKD----EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc----ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 99999999999999999988776510000000 000122223334556666778999999999999874 466543
Q ss_pred -HHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHH
Q 005732 401 -FSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGY 474 (680)
Q Consensus 401 -~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~ 474 (680)
|..+.......+...+|...+..+.... ..++..+..+...+.+..++..|.+-|..+.+ +|+.+.-+|.+.|
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 4444433334577888999999888775 66777777788899998888888886655442 5666666666655
Q ss_pred HH------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 475 SH------------HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 475 ~~------------~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
.+ .+..++|+++|.+......+ |...-+.+...++..|++.+|..+|.++.+... ....+|-.+.+
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah 688 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAH 688 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHH
Confidence 43 34567899999999885432 677778888889999999999999999996543 35567888999
Q ss_pred HHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh------
Q 005732 543 LLGRSGHLHEAEEFIKDM----PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV------ 612 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~------ 612 (680)
+|...|++-.|+++|+.. ....++.+...|..++...|.+.+|.+.+..+..+.|.++...+.++.+..+
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l 768 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL 768 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence 999999999999999976 2345788999999999999999999999999999999998887777665543
Q ss_pred -------------cCCchHHHHHHHHHhhCCC
Q 005732 613 -------------LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 613 -------------~g~~~~A~~~~~~~~~~~~ 631 (680)
.+..++|.++|.+|...+-
T Consensus 769 r~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 769 RLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2345667777777776553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-18 Score=186.46 Aligned_cols=391 Identities=10% Similarity=0.008 Sum_probs=209.5
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCC
Q 005732 188 ISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCE 267 (680)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (680)
+......|+ .++|++++.+..... |.+...+..+..++...|++++|..+++..++.. +.+...+..+..++...|
T Consensus 22 ~~ia~~~g~-~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 22 LQIALWAGQ-DAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 344444455 455555555554321 2233345555555555555555555555555442 223344444555555555
Q ss_pred CHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcC
Q 005732 268 AFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHR 344 (680)
Q Consensus 268 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 344 (680)
++++|...++++. |.+.. +..+..++...|+.++|+..++++ .+.
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a-------------------------------l~~ 145 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA-------------------------------LPR 145 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH-------------------------------HHh
Confidence 5555555555543 33333 344444444445555555555444 443
Q ss_pred CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh------hhHHHHHHHh-----cccCC
Q 005732 345 SIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR------STFSVLFHAC-----SCLGS 413 (680)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~-----~~~~~ 413 (680)
. |.+...+..+..++...+..++|++.++.... .|+. ......+... ...++
T Consensus 146 ~--------------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 146 A--------------PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred C--------------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 3 33334444444444444444545444443321 1110 0001111111 11112
Q ss_pred h---HHHHHHHHHHHhc-CCCchHh-HH----HHHHHHHHhcCChHHHHHHHhcCCCCC---H-HHHHHHHHHHHHcCCh
Q 005732 414 L---QQGQLLHAHLVKT-PFESNVY-VG----TSLVDMYSRCGSINDAQASFSSISSPN---V-AAWTALMNGYSHHGLG 480 (680)
Q Consensus 414 ~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~ 480 (680)
+ ++|...++.+.+. ...|+.. .+ ...+.++...|++++|++.|+.+.+.+ + .....+..+|...|++
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~ 288 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCc
Confidence 2 4455555555533 1111111 10 011223345567777777777666421 1 1122245567777777
Q ss_pred hHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-----------CCC---hhHHHHHHHH
Q 005732 481 SEAVLLFEIMLEQDIVP---NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGV-----------VPT---LEHYTCVVDL 543 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 543 (680)
++|+.+|+++.+..... .......+..++...|++++|.++++.+..... .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 77777777766532111 123444555566777777777777777764321 122 1234456667
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
+...|++++|+++++++ ...| +...+..++..+...|+.++|+..++++++.+|+++..+..++..+...|+|++|..
T Consensus 369 l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 77788888888888876 3333 566777777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCC
Q 005732 622 IRKRLTHLEV 631 (680)
Q Consensus 622 ~~~~~~~~~~ 631 (680)
+++++.+..+
T Consensus 449 ~~~~ll~~~P 458 (765)
T PRK10049 449 LTDDVVAREP 458 (765)
T ss_pred HHHHHHHhCC
Confidence 8888776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-18 Score=183.38 Aligned_cols=332 Identities=12% Similarity=-0.012 Sum_probs=187.5
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHH
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLING 293 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 293 (680)
+..-...++..+.+.|+.+.|..+++..+..... +......++.+....|++++|...|+++. |.+...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3444566777777888888888888887776533 33444445555556777777777776665 4444444555555
Q ss_pred HHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHH
Q 005732 294 LISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGY 373 (680)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~ 373 (680)
+...|++++|...+++... .. +.+...+..+...+
T Consensus 120 l~~~g~~~~Ai~~l~~Al~-------------------------------l~--------------P~~~~a~~~la~~l 154 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWL-------------------------------AF--------------SGNSQIFALHLRTL 154 (656)
T ss_pred HHHcCCHHHHHHHHHHHHH-------------------------------hC--------------CCcHHHHHHHHHHH
Confidence 5555555555555555544 32 23334444444444
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHH
Q 005732 374 VQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQ 453 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (680)
...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+...|++++|.
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred HHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 44444444444444443322 1111111111123344444444444444443321222222233344455555555555
Q ss_pred HHHhcCCC---CCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 454 ASFSSISS---PNVAAWTALMNGYSHHGLGSE----AVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 454 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+.++++.. .+...+..+...+...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++++
T Consensus 233 ~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 233 QTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55554432 234455556666666666664 67777777763 344 556666777777777777777777777
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 526 KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVV-WGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.... +.+...+..+..++.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...|+++++..|++
T Consensus 311 l~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 311 LATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 7543 223455666777777777777777777766 34454333 3334556677788888888888888887775
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-17 Score=176.10 Aligned_cols=427 Identities=11% Similarity=0.010 Sum_probs=300.4
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCC--CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhc
Q 005732 153 WSLMLVGYVQCNLMSDAFDVFIKMP--KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACAR 230 (680)
Q Consensus 153 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 230 (680)
+......+.+.|++++|+..|++.. .|+...|..+..++.+.|+ +++|++.+++..+.. |.+...+..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGD-WEKVVEDTTAALELD--PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 4455666777788888888877654 4666778888888888888 899999999988765 4367788889999999
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHh
Q 005732 231 LGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRL 310 (680)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 310 (680)
.|++++|...+..+...+- .+......++.-+........+...++.- +.....+..+ ..+...........-+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhcc
Confidence 9999999888876655431 12222222222111111122333333222 2222232222 2233222222222222221
Q ss_pred cc--CC-hhHHHHHHHH---HhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHH
Q 005732 311 TE--AN-SISYNSMIKG---YAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQ 384 (680)
Q Consensus 311 ~~--~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 384 (680)
.+ +. ...+..+... ....+++++|.+.|+.....+.. .+.....|+.+...+...|++++|+.
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~-----------~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL-----------GEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 11 11 1112222111 13357899999999998875410 13456678888999999999999999
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 005732 385 LYMTMRKLAIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-- 461 (680)
Q Consensus 385 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 461 (680)
.|++..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+
T Consensus 353 ~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 353 DLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999874 454 4578888888999999999999999998876 66788899999999999999999999998864
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh----
Q 005732 462 -PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLE---- 535 (680)
Q Consensus 462 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 535 (680)
.+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|++.|++........+..
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 45677888889999999999999999999884 454 6788888999999999999999999988654322111
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc
Q 005732 536 --HYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 536 --~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 601 (680)
.++.....+...|++++|.+++++. ...|+ ...+..++..+...|++++|+..|+++.++.+....
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 1222223344579999999999986 55564 557888999999999999999999999999876433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-18 Score=180.48 Aligned_cols=348 Identities=9% Similarity=-0.020 Sum_probs=280.0
Q ss_pred cCCCHHHHHHHHhhcC------CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHH
Q 005732 265 GCEAFDGAMRVYDRLE------NPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSK 335 (680)
Q Consensus 265 ~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~ 335 (680)
+..+|+.-.-.|.... ..+..-...++..+.+.|++++|+.+++.... | +...+..++.++...|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 4455555554554443 12222235667788899999999999999877 3 3446667777888899999999
Q ss_pred HHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccCCh
Q 005732 336 RLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT-RSTFSVLFHACSCLGSL 414 (680)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 414 (680)
..++++...+ |.+...+..+...+...|++++|...|+++... .|+ ...+..+...+...|++
T Consensus 97 ~~l~~~l~~~--------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~ 160 (656)
T PRK15174 97 QVVNKLLAVN--------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKE 160 (656)
T ss_pred HHHHHHHHhC--------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCh
Confidence 9999999877 677888999999999999999999999999874 444 56778888899999999
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAAWTALMNGYSHHGLGSEAVLLFEIM 490 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 490 (680)
++|...+..+.... +.+...+..+ ..+...|++++|...++.+.+ ++...+..+..++...|++++|+..++++
T Consensus 161 ~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 161 LQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999887765 3333344333 347889999999999998764 23334455677889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 005732 491 LEQDIVPNAATFVGVLSACVRAGLVNE----GMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL- 564 (680)
Q Consensus 491 ~~~~~~p~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 564 (680)
.+... .+...+..+...+...|++++ |...++++.... +.+...+..+...+.+.|++++|+..+++. ...|
T Consensus 239 l~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 239 LARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred HhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 98542 246777788899999999986 899999999754 336788899999999999999999999987 4455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 565 DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
++..+..+..++...|++++|+..++++.+..|+++..+..++.++...|++++|.+.+++..+..+.
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 46677888889999999999999999999999998777777889999999999999999998876554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=175.31 Aligned_cols=294 Identities=13% Similarity=0.048 Sum_probs=159.4
Q ss_pred HhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC---chHHHHHHHHhhcCCC
Q 005732 192 AKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFD---ESIGGALIEFYCGCEA 268 (680)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 268 (680)
...|+ +++|+..|.++.+.+ |.+..++..+...+...|++++|..+++.+...+..++ ..++..+
T Consensus 46 ~~~~~-~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L--------- 113 (389)
T PRK11788 46 LLNEQ-PDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL--------- 113 (389)
T ss_pred HhcCC-hHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---------
Confidence 34445 566666666666543 22444555566666666666666666665554321111 1223333
Q ss_pred HHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCC
Q 005732 269 FDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRS 345 (680)
Q Consensus 269 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 345 (680)
+..|...|++++|+..|+++.. .+..++..++..+.+.|++++|.+.++.+.+.+
T Consensus 114 ----------------------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 114 ----------------------GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred ----------------------HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 3444444444444444444433 233445555555555555555555555554433
Q ss_pred cchhhhHhhhcccCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHH
Q 005732 346 IISLNTMISVIPEMERN----PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLH 421 (680)
Q Consensus 346 ~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 421 (680)
. .+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..++
T Consensus 172 ~-------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 172 G-------------DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred C-------------CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 110 1133445555666666666666666665532 122334555556666666666666666
Q ss_pred HHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005732 422 AHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA 499 (680)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 499 (680)
+++.+.+......++..++.+|...|++++|.+.++++.+ |+...+..++..+.+.|++++|..+++++.+ ..|+.
T Consensus 238 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~ 315 (389)
T PRK11788 238 ERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSL 315 (389)
T ss_pred HHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCH
Confidence 6666543222234455666666666666666666665542 4444556666666677777777777776666 35666
Q ss_pred HHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCChh
Q 005732 500 ATFVGVLSACVR---AGLVNEGMKIFRSMKSYGVVPTLE 535 (680)
Q Consensus 500 ~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 535 (680)
.++..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 666666655543 346666777777666655555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-16 Score=174.77 Aligned_cols=410 Identities=10% Similarity=-0.001 Sum_probs=300.2
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhccCCC-C--CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHH
Q 005732 149 NELLWSLMLVGYVQCNLMSDAFDVFIKMPK-K--DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVI 225 (680)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 225 (680)
++..-...+......|+.++|++++.+... . +...+..+...+...++ +++|.++|++..+.. |.+...+..+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~--P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLE--PQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 444556677888899999999999998764 2 33347888888999999 999999999998864 44677788888
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHH
Q 005732 226 RACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIED 302 (680)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 302 (680)
..+...|+.++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++. |.+...+..+..++...|..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 99999999999999999998874 44555 8888899999999999999999987 5555555666777777777777
Q ss_pred HHHHHHHhcc-CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCCh--
Q 005732 303 AELIFNRLTE-ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLH-- 379 (680)
Q Consensus 303 a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~-- 379 (680)
|+..++.... |+. ..-+ ....+...... .+.......+++
T Consensus 169 Al~~l~~~~~~p~~---~~~l-------~~~~~~~~~r~---------------------------~~~~~~~~~~r~~~ 211 (765)
T PRK10049 169 ALGAIDDANLTPAE---KRDL-------EADAAAELVRL---------------------------SFMPTRSEKERYAI 211 (765)
T ss_pred HHHHHHhCCCCHHH---HHHH-------HHHHHHHHHHh---------------------------hcccccChhHHHHH
Confidence 7777766655 220 0000 00000000000 000011112233
Q ss_pred -HHHHHHHHHHHHC-CCCCChh-hHHH----HHHHhcccCChHHHHHHHHHHHhcCCC-chHhHHHHHHHHHHhcCChHH
Q 005732 380 -EKALQLYMTMRKL-AIDRTRS-TFSV----LFHACSCLGSLQQGQLLHAHLVKTPFE-SNVYVGTSLVDMYSRCGSIND 451 (680)
Q Consensus 380 -~~A~~~~~~m~~~-~~~p~~~-~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 451 (680)
++|++.++.+.+. ...|+.. .+.. .+..+...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHH
Confidence 7788888888754 2233321 1111 133455779999999999999987632 222 22335778999999999
Q ss_pred HHHHHhcCCC--CC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHh
Q 005732 452 AQASFSSISS--PN-----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-----------VPNA---ATFVGVLSACV 510 (680)
Q Consensus 452 A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~ 510 (680)
|+..|+++.+ |. ......+..++...|++++|..+++++.+... .|+. ..+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 9999998764 21 24566677788999999999999999987521 1232 24456677888
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 005732 511 RAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERA 588 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 588 (680)
..|++++|+++++++.... +.+...+..+...+...|++++|++.+++. ...|+ ...+...+..+...|++++|+..
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999998654 445788899999999999999999999988 55665 66777777788899999999999
Q ss_pred HHHHHcCCCCCCch
Q 005732 589 AQKMFGLDKKPISA 602 (680)
Q Consensus 589 ~~~~~~~~p~~~~~ 602 (680)
++++++..|+++.+
T Consensus 450 ~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 450 TDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHhCCCCHHH
Confidence 99999999999644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-16 Score=164.33 Aligned_cols=427 Identities=10% Similarity=0.001 Sum_probs=296.5
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCee---eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccC
Q 005732 156 MLVGYVQCNLMSDAFDVFIKMPKKDVV---VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLG 232 (680)
Q Consensus 156 l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 232 (680)
-+-...+.|+++.|++.|++..+.++. ....++..+...|+ .++|+..+++.... .|........+...+...|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~-~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR-DQEVIDVYERYQSS--MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC-cHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcC
Confidence 344567899999999999988743333 23378888888888 79999999998721 1112223333356788889
Q ss_pred ChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--CCccchhhHHHHHHHhcCCHHHHHHHHHHh
Q 005732 233 AFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE--NPCLNASNSLINGLISMGRIEDAELIFNRL 310 (680)
Q Consensus 233 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 310 (680)
++++|.++++.+.+.. +.+...+..++..+...++.++|++.++++. .|....+..++..+...++..+|+..++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999886 3456777788899999999999999999998 344344433333333355665699999999
Q ss_pred cc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHH--HHHHHHHHh---------C
Q 005732 311 TE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTW--NSMISGYVQ---------N 376 (680)
Q Consensus 311 ~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~li~~~~~---------~ 376 (680)
.+ | +...+..+..++.+.|-...|.++..+-...- .+....+ ...+.-.++ .
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f--------------~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV--------------SAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc--------------CHHHHHHHHHHHHHHHHhhcccccccch
Confidence 88 5 45677888899999999999998888754321 1222111 011111111 1
Q ss_pred CCh---HHHHHHHHHHHHC-CCCCCh-hhH----HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC
Q 005732 377 NLH---EKALQLYMTMRKL-AIDRTR-STF----SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG 447 (680)
Q Consensus 377 ~~~---~~A~~~~~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (680)
+++ +.|+.-++.+... +..|.. ..| .-.+-++...++..++++.++.+...+.+....+-..+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 222 3455555555441 222322 112 2244567778888889999998888886666667888888888889
Q ss_pred ChHHHHHHHhcCCCC---------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-------------CCCH-HHHHH
Q 005732 448 SINDAQASFSSISSP---------NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-------------VPNA-ATFVG 504 (680)
Q Consensus 448 ~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-------------~p~~-~~~~~ 504 (680)
++++|..+|+++..+ +......|.-++...+++++|..+++++.+... .||- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 999999888877431 233356788888888899999998888887321 1222 23344
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 582 (680)
++..+...|+..+|++.++++.... +-|......+.+.+...|++.+|++.++.. ...| +..+....+.+....|++
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 5566778888888888888887543 457778888888888888888888888766 3455 456666777777788888
Q ss_pred HHHHHHHHHHHcCCCCCCc
Q 005732 583 EVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~ 601 (680)
.+|..+.+.+.+..|+++.
T Consensus 501 ~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 501 HQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHHHhhCCCchh
Confidence 8888888888888888853
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-15 Score=161.19 Aligned_cols=431 Identities=11% Similarity=0.011 Sum_probs=285.5
Q ss_pred hhHHHHHHcCCChHHHHHHHhhhcCCchhH---HHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHH---HHHHhCCC
Q 005732 123 SGLLFFYANCFEIEEAKRVFDELHEDNELL---WSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLI---SGYAKSVD 196 (680)
Q Consensus 123 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~ 196 (680)
-.-+-...+.|+++.|+..|++..+.++.. ...++..+...|+.++|+..+++...|+...+..++ ..+...|+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 334555678888888888888887644331 237777788888888888888888776555544444 34555577
Q ss_pred ChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHH
Q 005732 197 GCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVY 276 (680)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (680)
+++|+++|+++.+.... ++..+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+
T Consensus 118 -yd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 118 -WDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred -HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 88888888888877643 6667777778888888888888888888765 344555544555554566666688888
Q ss_pred hhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc-CChhHHHHHHHHHhccCChhhHHHHHhhcC-------cCC
Q 005732 277 DRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE-ANSISYNSMIKGYAVYGQVDDSKRLFEKMP-------HRS 345 (680)
Q Consensus 277 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~ 345 (680)
+++. |.+...+..+..++.+.|-...|.++..+-.. -+...+..+ ..+.+.+..+... ++-
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccccchhhH
Confidence 8877 66667777888888888888888877766554 122221111 1111222221111 000
Q ss_pred cch------hhhHhhhcccCCCChhH----HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChH
Q 005732 346 IIS------LNTMISVIPEMERNPVT----WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQ 415 (680)
Q Consensus 346 ~~~------~~~l~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 415 (680)
... ...++......|+.... ..-.+.++...|++.++++.|+.+...+.+....+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 011 11111111122222122 22344567778888888888888888776655667778888888888888
Q ss_pred HHHHHHHHHHhcC-----CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---------------C-HHHHHHHHH
Q 005732 416 QGQLLHAHLVKTP-----FESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P---------------N-VAAWTALMN 472 (680)
Q Consensus 416 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---------------~-~~~~~~l~~ 472 (680)
+|..++..+.... .+++......|..+|...+++++|..+++.+.+ | | ...+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 8888888886643 123444456778888888888888888887763 1 1 123445667
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE 552 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (680)
.+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++...... +-+..+....+.++...|++.+
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 7788888888888888887743 2256777777888888888888888887766542 3345666677778888888888
Q ss_pred HHHHHHhC-CCCCCHHH
Q 005732 553 AEEFIKDM-PIELDAVV 568 (680)
Q Consensus 553 A~~~~~~~-~~~p~~~~ 568 (680)
|.++.+.+ ...|+...
T Consensus 503 A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 503 MELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhhCCCchh
Confidence 88888776 34454443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-14 Score=143.63 Aligned_cols=607 Identities=10% Similarity=0.004 Sum_probs=405.6
Q ss_pred cchhhHHHHHhhcCCChhHHHHhhccCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 005732 18 IVSTNKAITECGRNGQLVTARNLFDQMPI---RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC 94 (680)
Q Consensus 18 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~ 94 (680)
+...-...+.+..+|++++|.+++.++.+ .+..+|..|...|-..|+.+++...+--.-.. .+-|..-|..+-.-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHH
Confidence 33344444555556999999999999864 36789999999999999999998876555443 233556677777777
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCch--------hHHHHHHHHHHhcCCh
Q 005732 95 AQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNE--------LLWSLMLVGYVQCNLM 166 (680)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~ 166 (680)
...|.+..|.-++.+.++..++ +....-.-+..|-+.|+...|..-|.++...++ ..-..+++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 8899999999999999998743 455556678899999999999999998876443 1223345667777888
Q ss_pred hhHHHHhccCCC-----CCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCC---------------------CCcch
Q 005732 167 SDAFDVFIKMPK-----KDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENM---------------------PNEYT 220 (680)
Q Consensus 167 ~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~---------------------p~~~~ 220 (680)
+.|.+.++.... -+...++.++..+.+... ++.+......+......+ |+...
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q-~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ-SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH-HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 999988887653 244568899999999888 899999988887611111 12222
Q ss_pred HH----HHHHHHhccCChhhHHHHHHHHHHhCC--CCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--C--CccchhhHH
Q 005732 221 FD----SVIRACARLGAFCEGKVVHGLLIKCGF--EFDESIGGALIEFYCGCEAFDGAMRVYDRLE--N--PCLNASNSL 290 (680)
Q Consensus 221 ~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~~~~~l 290 (680)
|. .+.-++......+....+...+.+..+ .-+...|..+.++|...|++.+|+.+|..+. + .+...|-.+
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 22 233444566666777777777777774 4456789999999999999999999999998 2 234467889
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWN 367 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 367 (680)
..+|...|.++.|.+.|+.+.. |+ ...-..|-..+.+.|+.++|.+.++.+...+..... ....+|+....-
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e-----~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE-----ACAWEPERRILA 530 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh-----hccccHHHHHHH
Confidence 9999999999999999999988 43 345666777888999999999999997754410000 000234444455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC----------------------CCCChhhHHHHHHHhcccCChHHHHHHH----
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLA----------------------IDRTRSTFSVLFHACSCLGSLQQGQLLH---- 421 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~---- 421 (680)
...+.+.+.|+.++-+..-..|.... ..-...+...++.+-.+.++......-.
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 56667788888887666555554321 1111222233333333333322211111
Q ss_pred --HHHHhcCCCchH--hHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCHH----HHHHHHHHHHHcCChhHHHHHHH
Q 005732 422 --AHLVKTPFESNV--YVGTSLVDMYSRCGSINDAQASFSSISS-----PNVA----AWTALMNGYSHHGLGSEAVLLFE 488 (680)
Q Consensus 422 --~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~A~~~~~ 488 (680)
......++..+. ..+.-++..+++.++.++|..+...+.. .+.. .-...+.+.+..+++..|...++
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111112333222 3566778888999999999999887764 1221 23445567788999999999999
Q ss_pred HHHHC-C--CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005732 489 IMLEQ-D--IVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE 563 (680)
Q Consensus 489 ~m~~~-~--~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 563 (680)
.|... + ..|. ...|+..++.+.+.++-.--.+.+..+.......++..+......+...+.+..|+..+-+. ...
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~ 770 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN 770 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC
Confidence 99874 1 1233 33445455555555554444445554443332222333333345566788888888876655 344
Q ss_pred CCHHHH-HHHHHHHH----------hcCCHHHHHHHHHHHHcCCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 564 LDAVVW-GALLSACW----------FWMNMEVGERAAQKMFGLDKK--PISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 564 p~~~~~-~~l~~~~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
|+.+.. ..++.++. ++-.+-++..++.+..++... ..++++++|++|-..|-.--|..+++++++-.
T Consensus 771 pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 553333 23332332 223456777788777776544 56789999999999999999999999998764
Q ss_pred Cc
Q 005732 631 VK 632 (680)
Q Consensus 631 ~~ 632 (680)
+.
T Consensus 851 p~ 852 (895)
T KOG2076|consen 851 PK 852 (895)
T ss_pred cc
Confidence 43
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-12 Score=125.90 Aligned_cols=518 Identities=14% Similarity=0.085 Sum_probs=395.4
Q ss_pred HHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCC---
Q 005732 101 IDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMP--- 177 (680)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 177 (680)
..-.++++..++.- +.++..| .+.+...+.++|..++....+--+ +...|.-+|++..-++.|..++++..
T Consensus 363 ~~K~RVlRKALe~i-P~sv~LW----KaAVelE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 363 KNKKRVLRKALEHI-PRSVRLW----KAAVELEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHHHHHhC-CchHHHH----HHHHhccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344555555442 3344433 334445566667777776654211 11233445566666777777776544
Q ss_pred CCCeeeHHHHHHHHHhCCCChHHHHHHHHHH----HHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC--
Q 005732 178 KKDVVVWTKLISGYAKSVDGCEKALKLFRWM----RESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEF-- 251 (680)
Q Consensus 178 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m----~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 251 (680)
..+...|-+....=-.+|+ .+....++.+- ...|+.. +...|..=...|-..|..-.+..+....+.-|+..
T Consensus 437 ptd~~IWitaa~LEE~ngn-~~mv~kii~rgl~~L~~ngv~i-~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGN-VDMVEKIIDRGLSELQANGVEI-NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred CCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhcceee-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4566677666666666777 78887777654 4567776 88888888888888898888888888888877653
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CCh-hHHHHHHHHH
Q 005732 252 DESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--ANS-ISYNSMIKGY 325 (680)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~~~ 325 (680)
-..++..-...|.+.+.++-|..+|.... +...+.|......--..|..+....+|++... |.. ..|.....-+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 34678888889999999999999998877 66666667777777778999999999999887 543 3555556677
Q ss_pred hccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005732 326 AVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLF 405 (680)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 405 (680)
-..|++..|..++..+.+.+ +.+...|.+-+.....+.++++|..+|.+... ..|+...|.--+
T Consensus 595 w~agdv~~ar~il~~af~~~--------------pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~ 658 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN--------------PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSA 658 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHh
Confidence 78899999999999988876 66888999999999999999999999999877 456666666666
Q ss_pred HHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCChhH
Q 005732 406 HACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P-NVAAWTALMNGYSHHGLGSE 482 (680)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 482 (680)
..-.-.++.++|.+++++.++.- +.-...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.|...--+.|+.-.
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 66667889999999998888764 56677888889999999999999999987765 4 45578778777788889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005732 483 AVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPI 562 (680)
Q Consensus 483 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (680)
|..++++..-.+.+ +...|...+..=.+.|..+.|..+..+.... .+.+...|..-|....+.++-..+...+++-.
T Consensus 738 AR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce- 814 (913)
T KOG0495|consen 738 ARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE- 814 (913)
T ss_pred HHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-
Confidence 99999999887643 6788889999999999999999999888843 45566778777777777788777777777764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEE
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIEL 642 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 642 (680)
-|+.+...+...+....++++|...|.++++.+|+...+|...-..+.+.|.-+.=.+++++..... +.-|..|.-+
T Consensus 815 -~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 815 -HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 4666777788888899999999999999999999999999999999999999888899998887643 4456667665
Q ss_pred CCeEEEE
Q 005732 643 NSRVHAF 649 (680)
Q Consensus 643 ~~~~~~~ 649 (680)
...+..+
T Consensus 892 SK~i~n~ 898 (913)
T KOG0495|consen 892 SKDIKNW 898 (913)
T ss_pred hhhHHhc
Confidence 5544443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-14 Score=131.69 Aligned_cols=450 Identities=13% Similarity=0.085 Sum_probs=282.0
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh--ccCChHHH-HHHHHHHHHhCCCCcchhhhhH
Q 005732 49 VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCA--QLNSLIDG-KQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 49 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 125 (680)
+.+-|+++. ...+|..+++.-+|+.|+..|+..+...-..+++..+ ....+.-| .+.|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 445566655 4567789999999999999998888776555554433 22222211 122222223332 222222
Q ss_pred HHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCC----CCeeeHHHHHHHHHhCCCChHHH
Q 005732 126 LFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPK----KDVVVWTKLISGYAKSVDGCEKA 201 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a 201 (680)
+.|++.+ ++-+...+...++..+|.++|+--..+.|.+++++... -+..+||.+|.+..- -..
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-----~~~ 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-----SVG 257 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-----hcc
Confidence 3454444 55566666778899999999999999999999987763 456678888776543 333
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhH----HHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHH-HHHHH
Q 005732 202 LKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEG----KVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDG-AMRVY 276 (680)
Q Consensus 202 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 276 (680)
.+++.+|.+..+.| |..|||+++++.++.|+++.| .+++.+|++.|+.|...+|..+|..+++-++..+ |..++
T Consensus 258 K~Lv~EMisqkm~P-nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 258 KKLVAEMISQKMTP-NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred HHHHHHHHHhhcCC-chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 67888999888887 999999999999999977654 6778888899999999999998888887766543 33333
Q ss_pred hhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhc
Q 005732 277 DRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVI 356 (680)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 356 (680)
.++. +.+. |+ .|+-....|...|...+..|.+..+.+.|.++-.-+...+-..
T Consensus 337 ~dI~-----------N~lt--GK------~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~-------- 389 (625)
T KOG4422|consen 337 NDIQ-----------NSLT--GK------TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK-------- 389 (625)
T ss_pred HHHH-----------Hhhc--cC------cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--------
Confidence 3322 0000 00 0000000244567777778888888888877765554422100
Q ss_pred ccCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchH
Q 005732 357 PEMERN---PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNV 433 (680)
Q Consensus 357 ~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 433 (680)
-.+++ ..-|..+....|+....+.-+.+|+.|.-.-+-|+..+...++++....+.++-.-+++..++..|.....
T Consensus 390 -~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 390 -FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred -hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 01222 23356677788888999999999999998888899999999999999999999999999999888755544
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISSPNVA---AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
.....+...+++..- .|+.. -+.....-++ ..-.+.....-.+|.+... .....+..+..+.
T Consensus 469 ~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 469 DLREEILMLLARDKL------------HPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLL 533 (625)
T ss_pred HHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHH
Confidence 444444444443320 12111 1111111110 1111222222334444333 3344555556667
Q ss_pred ccCCHHHHHHHHHHHHhcC-CCCChhH---HHHHHHHHHhcCChHHHHHHHHhC
Q 005732 511 RAGLVNEGMKIFRSMKSYG-VVPTLEH---YTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~~~-~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
+.|..++|.+++..+.+.+ -.|-... ...+++.-.+......|...++-|
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7888888888887775322 2222223 335556666777777777777766
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-14 Score=130.89 Aligned_cols=358 Identities=14% Similarity=0.169 Sum_probs=231.2
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhH
Q 005732 46 IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 46 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (680)
..+..+|..||.++|+--..+.|.++|++..+..++.+..+||.+|.+..-.. .++++.+|+....+||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 34567899999999999999999999999999989999999999998765433 38899999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHhh----hcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHH
Q 005732 126 LFFYANCFEIEEAKRVFDE----LHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKA 201 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 201 (680)
+++.++.|+++.|...+-+ |.+-+ .+|...+|..+|..+.+.++....+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiG---------------------------VePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIG---------------------------VEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhC---------------------------CCcchhhHHHHHHHhcccCCchhhh
Confidence 9999999998877665544 33322 4788889999999888888743445
Q ss_pred HHHHHHHHH----c---CCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC----CCCCchHHHHHHHHhhcCCCHH
Q 005732 202 LKLFRWMRE----S---GENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG----FEFDESIGGALIEFYCGCEAFD 270 (680)
Q Consensus 202 ~~~~~~m~~----~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~ 270 (680)
..++.+... . -+.|.|...|...+..|.+..+.+.|.++...+.... +.|+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~---------------- 396 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH---------------- 396 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------
Confidence 555555443 1 1233456678888899999999999988887765431 112110
Q ss_pred HHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCc
Q 005732 271 GAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSI 346 (680)
Q Consensus 271 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 346 (680)
+ ...|..+....++....+.-...|+.|.. |+..+...++++..-.+.++-..+++..+...|.
T Consensus 397 -------~-----~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 397 -------R-----NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred -------H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 0 01124455556666667777777777765 7777788888888888888888888877766541
Q ss_pred chhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh---hHHHHHHHhcccCChHHHHHHHHH
Q 005732 347 ISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS---TFSVLFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 347 ~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~ 423 (680)
+++. +--.+++..|....+.|+.. -+.....-|+ ..-.+..+..-.+
T Consensus 465 ------------------t~r~-----------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R 514 (625)
T KOG4422|consen 465 ------------------TFRS-----------DLREEILMLLARDKLHPLTPEREQLQVAFAKCA-ADIKEAYESQPIR 514 (625)
T ss_pred ------------------hhhH-----------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHH
Confidence 1211 12233444444444444433 2222222111 1111111222223
Q ss_pred HHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005732 424 LVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD 494 (680)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 494 (680)
+.+.. ......+...-.+.+.|+.++|.++|.-+.+ |......-++....+.+.+.+|+..++-|...+
T Consensus 515 ~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 515 QRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 33333 3344456666667777777777777765521 333333345555566666777777776665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-14 Score=135.08 Aligned_cols=202 Identities=12% Similarity=0.130 Sum_probs=153.4
Q ss_pred cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005732 411 LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGSEAVLLF 487 (680)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 487 (680)
.|++++|...+++.....-.-....|+ +.-.+-..|++++|.+.|-++. ..+....-.+...|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 445555555555544433222222222 2233455677777777775543 356666667778888888999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 005732 488 EIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD 565 (680)
Q Consensus 488 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 565 (680)
.+... +.|+ +..+..|...|-+.|+-..|.+++-.-.+. ++-+..+...|...|....-+++|+.+|++. -++|+
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 87766 5554 777888889999999999999887654432 5667888888999999999999999999998 48999
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCc
Q 005732 566 AVVWGALLSACW-FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKW 616 (680)
Q Consensus 566 ~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 616 (680)
..-|..++..|. +.|++.+|..+|+......|.+...+..|++++...|..
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999988887765 599999999999999999999999999999999888853
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.5e-13 Score=134.19 Aligned_cols=535 Identities=12% Similarity=0.063 Sum_probs=366.8
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHH
Q 005732 59 YSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEA 138 (680)
Q Consensus 59 ~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 138 (680)
+.-.|+.++|.+++.+..+. .+-+...|.+|...+-..|+.+++...+-.+.-.. +.|...|..+.......|+++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 33459999999999999887 35577889999999999999999988776655444 44668899999999999999999
Q ss_pred HHHHhhhcCCchhHH---HHHHHHHHhcCChhhHHHHhccCCCCCe----e----eHHHHHHHHHhCCCChHHHHHHHHH
Q 005732 139 KRVFDELHEDNELLW---SLMLVGYVQCNLMSDAFDVFIKMPKKDV----V----VWTKLISGYAKSVDGCEKALKLFRW 207 (680)
Q Consensus 139 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~----~~~~ll~~~~~~~~~~~~a~~~~~~ 207 (680)
.-+|.+..+.++..| -.-...|-+.|+...|.+.|.++...++ . .-..++..+...++ -+.|++.++.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~-~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE-RERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHH
Confidence 999999887554444 3445678889999999999988764332 1 12234566777777 4899999988
Q ss_pred HHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh---------------------------CCCCCchH-HHHH
Q 005732 208 MRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKC---------------------------GFEFDESI-GGAL 259 (680)
Q Consensus 208 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~-~~~l 259 (680)
....+....+...+++++..+.+...++.+......+... ++.++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 8774333337778899999999999999888887777651 22333333 2222
Q ss_pred HHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHHHHHhccCCh
Q 005732 260 IEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMIKGYAVYGQV 331 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~ 331 (680)
--...+.+...+++.-|.... ...+..|..+..+|...|++.+|+.+|..+.. .+...|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 233344555666655554333 45556688899999999999999999999988 4567899999999999999
Q ss_pred hhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH--------CCCCCChhhHHH
Q 005732 332 DDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK--------LAIDRTRSTFSV 403 (680)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--------~~~~p~~~~~~~ 403 (680)
+.|.+.|+.++... |.+...-..|...+-+.|++++|.+.+..+.. .+..|+......
T Consensus 466 e~A~e~y~kvl~~~--------------p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA--------------PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHHhcC--------------CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 99999999999876 66777777888899999999999999998642 223444455555
Q ss_pred HHHHhcccCChHHHHHHHHHHHhcC----------------------CCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-
Q 005732 404 LFHACSCLGSLQQGQLLHAHLVKTP----------------------FESNVYVGTSLVDMYSRCGSINDAQASFSSIS- 460 (680)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 460 (680)
....+...|+.++-..+...++... .+-.......++.+-.+.++.....+-...-.
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 6667777888877555554444321 11111222233333333333333222222111
Q ss_pred -------CCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHH---HH-HHHHHHHhccCCHHHHHHHHHH
Q 005732 461 -------SPNV----AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAA---TF-VGVLSACVRAGLVNEGMKIFRS 524 (680)
Q Consensus 461 -------~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~---~~-~~ll~~~~~~g~~~~A~~~~~~ 524 (680)
..+. ..+..++.++++.+++++|+.+...+......- +.. .+ ...+.++...+++..|...++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1122 234557778899999999999999888753221 111 22 3345566789999999999999
Q ss_pred HHhc-CCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 525 MKSY-GVVPT---LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD--AVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 525 ~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
|... +...+ ...|+...+...+.|+-.--.+++... ...|+ +......+.-....+.+.-|...|-++....|
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p 771 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP 771 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC
Confidence 9832 32222 334554555555555544444444443 22332 33333334445678899999999999999999
Q ss_pred CCCchHHHHHHHH
Q 005732 598 KPISAYVILSNIY 610 (680)
Q Consensus 598 ~~~~~~~~l~~~~ 610 (680)
++|..-..++-++
T Consensus 772 d~Pl~nl~lglaf 784 (895)
T KOG2076|consen 772 DSPLINLCLGLAF 784 (895)
T ss_pred CCcHHHHHHHHHH
Confidence 9887655555544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-12 Score=131.02 Aligned_cols=600 Identities=12% Similarity=0.070 Sum_probs=350.3
Q ss_pred hhhhcccCccchhhHHHHHhhcCCChhHHHHhhccCCCC----ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 005732 9 QTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMPIR----TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE 84 (680)
Q Consensus 9 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 84 (680)
++..+..|+-.+|..+|.-|+..|+.+.|. +|.-|... +...++.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 445667899999999999999999999999 89888643 5567888998888888887776 6788
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHH-------HhCCC-Ccchh-------------hhhHHHHHHcCCChHHHHHHHh
Q 005732 85 TTFSTILSVCAQLNSLIDGKQIHCLVL-------KSGYE-CFEFV-------------GSGLLFFYANCFEIEEAKRVFD 143 (680)
Q Consensus 85 ~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~-~~~~~-------------~~~l~~~~~~~g~~~~a~~~~~ 143 (680)
.||..++.+|+.+||+..-..+-+.+. ..|+. |.... ....+......|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999998766433333232 12221 11111 1122333344455555555554
Q ss_pred hhcCC---chhHHHHHHHHHHhc-CChhhHHHHhccCC-CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCc
Q 005732 144 ELHED---NELLWSLMLVGYVQC-NLMSDAFDVFIKMP-KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNE 218 (680)
Q Consensus 144 ~~~~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 218 (680)
.++-. ++... +++-+... ..+++-....+... .+++.+|..++..-.-+|+ .+.|..++.+|++.|.+. +.
T Consensus 164 ~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~-~d~Ak~ll~emke~gfpi-r~ 239 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD-VDGAKNLLYEMKEKGFPI-RA 239 (1088)
T ss_pred hCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc-hhhHHHHHHHHHHcCCCc-cc
Confidence 44311 11111 12222221 12223333333333 3888999999999999999 899999999999999887 77
Q ss_pred chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHH-----------------------
Q 005732 219 YTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRV----------------------- 275 (680)
Q Consensus 219 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----------------------- 275 (680)
.-|-.++-+ .++...+..++..|.+.|+.|+..|+...+..+.++|....+...
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 767666655 788889999999999999999999998877776664432222111
Q ss_pred -HhhcC---------------CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc-------CChhHHHHHHHHHhccCChh
Q 005732 276 -YDRLE---------------NPCLNASNSLINGLISMGRIEDAELIFNRLTE-------ANSISYNSMIKGYAVYGQVD 332 (680)
Q Consensus 276 -~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~ 332 (680)
++.-. -+.....-.++.-...+|.-++.+++...+.. .++..|..++.-|.+.-+..
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 11000 00000111222223335666666666666655 23445666665554432211
Q ss_pred ----------------------hHHHHHhhcCcCCcchhhhHhhhcc--------cC----CCChhHHHHHHHHHHhCCC
Q 005732 333 ----------------------DSKRLFEKMPHRSIISLNTMISVIP--------EM----ERNPVTWNSMISGYVQNNL 378 (680)
Q Consensus 333 ----------------------~a~~~~~~~~~~~~~~~~~l~~~~~--------~~----~~~~~~~~~li~~~~~~~~ 378 (680)
+..++.....+... ...+.+..+ .. .+-...-+.++..+++.-+
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~--lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSF--LRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchH--HHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 11111111111000 000000000 00 0011122345555555555
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc--CCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 379 HEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT--PFESNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 379 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
..+++..-++....-++ ..|..++.-++.....+.|..+.+++... .+..+..-+..+.+.+.+.+....+..++
T Consensus 475 ~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 55665444444332221 56888888888888888888888877643 23445566777888888888888888888
Q ss_pred hcCCC-----CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------------------------------CCCHH
Q 005732 457 SSISS-----PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI------------------------------VPNAA 500 (680)
Q Consensus 457 ~~~~~-----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------------------------~p~~~ 500 (680)
+++.+ ++ ..++--+....+..|+.+...++++-+...|+ +|.+.
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~ 631 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPK 631 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChH
Confidence 88764 22 22334455555666666666665555544332 22222
Q ss_pred HHHHHHHH---------------------HhccCCHHHHHHHHHHH--H-hc--------C-CCC---------ChhHHH
Q 005732 501 TFVGVLSA---------------------CVRAGLVNEGMKIFRSM--K-SY--------G-VVP---------TLEHYT 538 (680)
Q Consensus 501 ~~~~ll~~---------------------~~~~g~~~~A~~~~~~~--~-~~--------~-~~~---------~~~~~~ 538 (680)
....+.+. |.+.|++..|.++.+-- . +. | +.| +.....
T Consensus 632 ~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~d 711 (1088)
T KOG4318|consen 632 DLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKND 711 (1088)
T ss_pred HHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHH
Confidence 22222221 12222222222221100 0 00 0 000 111223
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHh
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFW---MNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAV 612 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 612 (680)
.|+..|.+.|+++.|..+|.++.+.|+..+...++..+.+. -++.++....+++.+..|..+ ..|...+.+..+
T Consensus 712 RLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q 791 (1088)
T KOG4318|consen 712 RLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQ 791 (1088)
T ss_pred HHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhh
Confidence 47778899999999999999999889988888888877653 356667777777776665543 234455556666
Q ss_pred cCCchHHHHHHHHHhhCCCc
Q 005732 613 LGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~~ 632 (680)
-...+.|.+.+.+..++...
T Consensus 792 ~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 792 TEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 66666889999988887443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-11 Score=117.03 Aligned_cols=409 Identities=10% Similarity=-0.005 Sum_probs=187.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHH----HHhCCCCCchHHHHHHHHhhcCCCHHHHH
Q 005732 198 CEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLL----IKCGFEFDESIGGALIEFYCGCEAFDGAM 273 (680)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (680)
|+.|..+++..++.- |.+...|.+....--..|+.+...++++.- ...|+..+...|..=...+-..|..-.+.
T Consensus 422 YenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 555555555555432 225555555555555555555555554432 23355555555554444454445544444
Q ss_pred HHHhhcC------CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcC
Q 005732 274 RVYDRLE------NPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHR 344 (680)
Q Consensus 274 ~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 344 (680)
.+...+. .+...+|..-...|.+.+.++-|..+|....+ | +...|......--..|..++...+|+++...
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 4444333 22233344444444455555555544444444 1 2223333333333344444444444444443
Q ss_pred CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHH
Q 005732 345 SIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHL 424 (680)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 424 (680)
- +.....|......+...|+...|..++....+.... +...+...+..-.....++.|..+|.+.
T Consensus 580 ~--------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 580 C--------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred C--------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 2 333344444444444445555555555444443211 3334444444444444455555554444
Q ss_pred HhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-
Q 005732 425 VKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNV-AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA- 500 (680)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~- 500 (680)
... .|+..+|.--+....-.++.++|.+++++..+ |+. ..|..+.+.+-+.++.+.|...|..-.+ .-|+..
T Consensus 645 r~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ip 720 (913)
T KOG0495|consen 645 RSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIP 720 (913)
T ss_pred hcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCch
Confidence 432 23333333333334444444555544444433 222 2344444444444444444444433322 223322
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWF 578 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 578 (680)
.|..|...=.+.|.+-.|..++++..-.+ +.+...|-..|..-.+.|+.+.|..++.+. ..+.+...|..-+....+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 22222222233444445555554444332 223444444444444555555554444443 222233334443433333
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
.++-..+...+++. -.++......+..+....+++.|.+.|.+..+.+..
T Consensus 800 ~~rkTks~DALkkc----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 800 PQRKTKSIDALKKC----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred cccchHHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 33333333322221 223456677888889999999999999998876643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-16 Score=148.19 Aligned_cols=258 Identities=16% Similarity=0.117 Sum_probs=114.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHH-HHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhc
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSV-LFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRC 446 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (680)
.+...+.+.|++++|++++++......+|+...|.. +...+...++.+.|...++.+...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 557788899999999999976655443455555544 4455667899999999999999876 4466777777777 789
Q ss_pred CChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005732 447 GSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD-IVPNAATFVGVLSACVRAGLVNEGMKIFR 523 (680)
Q Consensus 447 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 523 (680)
+++++|.+++...-+ +++..+..++..+...++++++..+++++.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999877643 667778888899999999999999999987643 34567778888889999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc
Q 005732 524 SMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 601 (680)
+..+.. +.+......++..+...|+.+++.++++... .+.|+..+..+..++...|+.++|..+++++.+..|+++.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 999764 2357788899999999999999888887762 2456677889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
....++.++...|+.++|.++.+++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-12 Score=122.42 Aligned_cols=434 Identities=12% Similarity=0.076 Sum_probs=285.2
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCCCCCcchH-HHHHHHHhccCChhhHHHHHHHHHHhCCCCCch----HHHHHHHHh
Q 005732 189 SGYAKSVDGCEKALKLFRWMRESGENMPNEYTF-DSVIRACARLGAFCEGKVVHGLLIKCGFEFDES----IGGALIEFY 263 (680)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~ 263 (680)
+.|..+.- ..+|+..|+-+++....| |.... ..+.+.+.+.+++.+|.+.+...+..-...+.. ..+.+.-.+
T Consensus 209 qqy~~ndm-~~ealntyeiivknkmf~-nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 209 QQYEANDM-TAEALNTYEIIVKNKMFP-NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHhhhhHH-HHHHhhhhhhhhcccccC-CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 34444445 678888888888877776 65443 335566778888999999998887764333333 334444467
Q ss_pred hcCCCHHHHHHHHhhcC--CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----------------CChhHHHHH----
Q 005732 264 CGCEAFDGAMRVYDRLE--NPCLNASNSLINGLISMGRIEDAELIFNRLTE----------------ANSISYNSM---- 321 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~l---- 321 (680)
.+.|.++.|...|+.+. .|+..+-..++-++..-|+-++..+.|.+|.. |+....+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 78999999999999877 44444334455555667888888888888875 222222221
Q ss_pred -HHHHhccCC--hhhHHHHHhhcCcCCcchhhhHhhhcc---c-CCCC------hhHHHHHHHHHHhCCChHHHHHHHHH
Q 005732 322 -IKGYAVYGQ--VDDSKRLFEKMPHRSIISLNTMISVIP---E-MERN------PVTWNSMISGYVQNNLHEKALQLYMT 388 (680)
Q Consensus 322 -l~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~l~~~~~---~-~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~ 388 (680)
++-.-+.++ .++++-.-.++...-+ ...+...+. + .+.+ ...-..-...+.+.|+++.|+++++-
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi--~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVI--APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhcccc--ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 222222221 2222222222221110 000000000 0 0000 00001123357889999999999998
Q ss_pred HHHCCCCCChhhHH--HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHH
Q 005732 389 MRKLAIDRTRSTFS--VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAA 466 (680)
Q Consensus 389 m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 466 (680)
+.+..-+.-+..-+ .++..+....++..|.++-+...... .-++.....-.+.-...|++++|.+.+++....|...
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 87654333222222 22333333456777777777666543 3333333333333445799999999999999877765
Q ss_pred HHHHHH---HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 467 WTALMN---GYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 467 ~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
-.+|.. .+-..|+.++|+..|-++..- +.-+...+..+...|....+...|++++.+.... ++.|+.++..|.+.
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHH
Confidence 555443 467789999999999887652 2335777778888999999999999999887754 56689999999999
Q ss_pred HHhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 544 LGRSGHLHEAEEFIKD-MP-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
|-+.|+-..|.++.-+ .. ++.+..+...|...|....-+++++.+|+++--..|+...-...++.++.+.|+++.|.+
T Consensus 602 ydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999987554 45 445788888888888888889999999999999999875555566677788999999999
Q ss_pred HHHHHhhC
Q 005732 622 IRKRLTHL 629 (680)
Q Consensus 622 ~~~~~~~~ 629 (680)
+++...++
T Consensus 682 ~yk~~hrk 689 (840)
T KOG2003|consen 682 LYKDIHRK 689 (840)
T ss_pred HHHHHHHh
Confidence 99998765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-12 Score=122.40 Aligned_cols=410 Identities=13% Similarity=0.048 Sum_probs=247.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCC-cchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC-chHHHHHHHH
Q 005732 185 TKLISGYAKSVDGCEKALKLFRWMRESGENMPN-EYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFD-ESIGGALIEF 262 (680)
Q Consensus 185 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 262 (680)
...-.-|.+++. +++|+++|.+.++.. | | +..|.....+|...|+|+++.+--...++.+ |+ +..+..-..+
T Consensus 119 K~~GN~~f~~kk-Y~eAIkyY~~AI~l~--p-~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 119 KTKGNKFFRNKK-YDEAIKYYTQAIELC--P-DEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred Hhhhhhhhhccc-HHHHHHHHHHHHhcC--C-CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 344456777788 899999999988765 3 6 7778888888888899988887777776653 33 2344444556
Q ss_pred hhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHH
Q 005732 263 YCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLF 338 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 338 (680)
+-..|++++|+.=..-.- -.+.++ ..++.-..+.--..++.+.+..-+. ....-.+.+..|...-..+-
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~Lkk~a~~ka~e~~k~nr~-p~lPS~~fi~syf~sF~~~~----- 265 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASI-EPMAERVLKKQAMKKAKEKLKENRP-PVLPSATFIASYFGSFHADP----- 265 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchh-HHHHHHHHHHHHHHHHHHhhcccCC-CCCCcHHHHHHHHhhccccc-----
Confidence 666677777653221110 011111 1111111111111222222221111 11111122222221100000
Q ss_pred hhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHH----h-CCChHHHHHHHHHHHHCC-CCCChh-----------hH
Q 005732 339 EKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYV----Q-NNLHEKALQLYMTMRKLA-IDRTRS-----------TF 401 (680)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~----~-~~~~~~A~~~~~~m~~~~-~~p~~~-----------~~ 401 (680)
.... ..+.......+..++- . ...+.+|...+.+-.... ..++.. +.
T Consensus 266 ---~~~~-------------~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 266 ---KPLF-------------DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred ---cccc-------------cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 0000 0011112222222211 1 112344444433322110 111111 11
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcC
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHG 478 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 478 (680)
.....-+.-.|+.-.+..-|+..++... .+...|-.+..+|....+.++-+..|+...+ .++.+|..-.+.+.-.+
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH
Confidence 1111112235777788888888887763 3333366677778888999999999987764 45667777777777788
Q ss_pred ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005732 479 LGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFI 557 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (680)
++++|..=|++.+. +.|+ ...|..+.-+..+.+.++++...|++..+. ++--+.+|+.....+...++++.|.+.+
T Consensus 409 q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 409 QYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 89999999999988 4554 567777777777888999999999998854 5667888999999999999999999999
Q ss_pred HhC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 558 KDM-PIELD---------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 558 ~~~-~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
+.. ...|+ +.+..+++..-. .+++.+|+.+++++++++|....+|..|+.+..+.|+.++|+++|++-.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 876 33332 223333332222 4899999999999999999998999999999999999999999999865
Q ss_pred h
Q 005732 628 H 628 (680)
Q Consensus 628 ~ 628 (680)
.
T Consensus 565 ~ 565 (606)
T KOG0547|consen 565 Q 565 (606)
T ss_pred H
Confidence 3
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=131.29 Aligned_cols=277 Identities=10% Similarity=0.042 Sum_probs=213.8
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhH-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH--HH
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVT-WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS--VL 404 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l 404 (680)
.|+++.|++.+....+.. +++.. |.....+..+.|+++.|.+.|.++.+ ..|+..... ..
T Consensus 97 eGd~~~A~k~l~~~~~~~---------------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~ 159 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---------------EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITR 159 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHH
Confidence 688898888887755432 22333 43345555889999999999999987 445554332 34
Q ss_pred HHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHH--------HHHHHHHH
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVA--------AWTALMNG 473 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~--------~~~~l~~~ 473 (680)
...+...|+++.|...++.+.+.. |.++.....+...|.+.|++++|.+++..+.+ .+.. .|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999999887 77888999999999999999999999988874 1222 33344444
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
.....+.+...++++...+. .+.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~a 313 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQL 313 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHH
Confidence 44455566667777766442 2346778888999999999999999999999874 4444322 22334456999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 554 EEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 554 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.+.+++. +..| |+..+..++..|...|++++|...|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 314 l~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 314 EKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999987 4455 57778899999999999999999999999999997 5678999999999999999999998754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=115.11 Aligned_cols=289 Identities=11% Similarity=0.065 Sum_probs=195.2
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--CChh
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID--RTRS 399 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~ 399 (680)
..++....+.+++.+-.+.....|. +.+...-+....+.....++++|+.+|+++.+...- -|..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf-------------~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd 300 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGF-------------PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD 300 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-------------CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH
Confidence 4455555667777777777666663 444444444444555677788888888888776321 1445
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHH
Q 005732 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSH 476 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 476 (680)
+|+.++-.-.... ...++.+-.-.--+--+.|...+.+.|+-.++.++|...|+...+ .....|+.+.+-|..
T Consensus 301 lySN~LYv~~~~s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE 376 (559)
T KOG1155|consen 301 LYSNVLYVKNDKS----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE 376 (559)
T ss_pred HHhHHHHHHhhhH----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH
Confidence 6665554322211 111111111111134455666777788888888888888887765 334578888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
.++...|++-++++++-. +-|-..|-.|.++|.-.+.+.-|+-+|++..... +.|...|.+|..+|.+.++.++|++.
T Consensus 377 mKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred hcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHH
Confidence 888888888888888743 2256778888888888888888888888888654 44778888888888888888888888
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc-------CCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 557 IKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFG-------LDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 557 ~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
|+.. ..+.+...+..|+..+-+.++.++|..+|++-++ .+|+...+...|+.-+.+.+++++|..+..+..
T Consensus 455 ykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 455 YKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8876 2234567778888888888888888888888776 334334455567777888888888888776655
Q ss_pred hC
Q 005732 628 HL 629 (680)
Q Consensus 628 ~~ 629 (680)
.-
T Consensus 535 ~~ 536 (559)
T KOG1155|consen 535 KG 536 (559)
T ss_pred cC
Confidence 43
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-11 Score=116.14 Aligned_cols=441 Identities=12% Similarity=0.036 Sum_probs=314.7
Q ss_pred CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHH
Q 005732 180 DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGAL 259 (680)
Q Consensus 180 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 259 (680)
+..-+..+++-+..+.+ +..|.-+-++....+. |+...-.+..++.-.|+.+.|..+...-.-. ..|..+....
T Consensus 15 s~~~~~~~~r~~l~q~~-y~~a~f~adkV~~l~~---dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHR-YKTALFWADKVAGLTN---DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhccC---ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 44556777777777777 8888888888876663 5555566788888888888887777654322 4577778888
Q ss_pred HHHhhcCCCHHHHHHHHhhcC---------CCc--------cch----hhH-------HHHHHHhcCCHHHHHHHHHHhc
Q 005732 260 IEFYCGCEAFDGAMRVYDRLE---------NPC--------LNA----SNS-------LINGLISMGRIEDAELIFNRLT 311 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~---------~~~--------~~~----~~~-------l~~~~~~~g~~~~a~~~~~~~~ 311 (680)
..++.+..+++.|..++.... +.+ ... -+. -...|....+.++|...|.+..
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 889999999999999998322 111 111 011 1233445556778888888877
Q ss_pred cCChhHHHHHHHHHhccC-ChhhHHHHHhh-----cCcCCcchhhhHhhhc------------------ccCCCChhHHH
Q 005732 312 EANSISYNSMIKGYAVYG-QVDDSKRLFEK-----MPHRSIISLNTMISVI------------------PEMERNPVTWN 367 (680)
Q Consensus 312 ~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~-----~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~ 367 (680)
..|...|..+...-...- -..+-..+|+. ..+.++.....+.... .+...++....
T Consensus 169 ~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred hcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 766666554433221110 01111222221 0000000000000000 01234455555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG 447 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (680)
.-.+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+.+.- |..+.+|-++...|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 56667778899999999999988753 5566666677778888888887777777777765 778889999999999999
Q ss_pred ChHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005732 448 SINDAQASFSSISSPN---VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRS 524 (680)
Q Consensus 448 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 524 (680)
+..+|.+.|.+...-| ...|-...++|+-.|..++|+..+..+.+.=.. ....+..+..-|.+.++.+.|.+.|.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999877533 468999999999999999999999888773111 222333455568889999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 005732 525 MKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--------IE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 525 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
..... +.|+..++-+.-.....+.+.+|..+|+..- .. --..+++.|+.+|.+.+.+++|+..+++++.+
T Consensus 406 A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 98643 4578888888888888999999999998751 11 14567899999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 596 DKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.|.++.++..++.+|...|+.+.|.+.+.+.+...
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999987543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-12 Score=127.47 Aligned_cols=285 Identities=9% Similarity=-0.021 Sum_probs=210.8
Q ss_pred hccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh--hHHH
Q 005732 326 AVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS--TFSV 403 (680)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ 403 (680)
...|+++.|.+.+.+..+.. +.....+-....+..+.|+++.|.+.+.+..+.. |+.. .-..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--------------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~ 158 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--------------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIA 158 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHH
Confidence 46789999999998876654 2334455566778888999999999999987643 5543 3333
Q ss_pred HHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHH----HHHHHHH
Q 005732 404 LFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTA----LMNGYSH 476 (680)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~----l~~~~~~ 476 (680)
....+...|+++.|...++.+.+.. |.++.+...+...+...|+++.|.+.+..+.+ .+...+.. .......
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5777888999999999999999987 77788899999999999999999999988874 33333321 1112233
Q ss_pred cCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH-HHHHHhcCChHH
Q 005732 477 HGLGSEAVLLFEIMLEQDI---VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV-VDLLGRSGHLHE 552 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~ 552 (680)
.+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+..+......+..+ .-.....++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 3333344455555555321 126788888889999999999999999999975443322211111 122234577888
Q ss_pred HHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 553 AEEFIKDM-PIEL-DA--VVWGALLSACWFWMNMEVGERAAQ--KMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 553 A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
+.+.+++. ...| |+ ....++++.|.+.|++++|.+.|+ .+++..|++ ..+.+++.++.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888876 4445 45 677899999999999999999999 578888887 45779999999999999999999986
Q ss_pred hh
Q 005732 627 TH 628 (680)
Q Consensus 627 ~~ 628 (680)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-12 Score=127.15 Aligned_cols=255 Identities=14% Similarity=0.060 Sum_probs=165.3
Q ss_pred HhcCCHHHHHHHHHHhcc--CChhHHH--HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHH
Q 005732 295 ISMGRIEDAELIFNRLTE--ANSISYN--SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMI 370 (680)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~--~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li 370 (680)
.+.|+++.|...+.++.+ |+...+. .....+...|+++.|...++++.+.+ |.++.....+.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--------------P~~~~al~ll~ 194 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--------------PRHPEVLRLAE 194 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------CCCHHHHHHHH
Confidence 444555555555555444 3322221 12334455555555555555555544 44455555555
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChH
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIN 450 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (680)
..|.+.|++++|.+++..+.+.+..++. ....+ ....|..++.......+.+
T Consensus 195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l---------------------------~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 195 QAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML---------------------------EQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH---------------------------HHHHHHHHHHHHHHhcCHH
Confidence 5555555555555555555554322111 00000 0012223333333444566
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 005732 451 DAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 451 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 527 (680)
...++++.+.+ .++.....+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 66677776653 57778888899999999999999999998883 4555322 23344566999999999999886
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 005732 528 YGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLD 596 (680)
Q Consensus 528 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 596 (680)
.. +-|+..+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+-
T Consensus 323 ~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 323 QH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 54 446777888999999999999999999988 678999999999999999999999999999998754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-11 Score=112.72 Aligned_cols=356 Identities=15% Similarity=0.116 Sum_probs=179.0
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHH--HHHH
Q 005732 149 NELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFD--SVIR 226 (680)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~ 226 (680)
|.+.+-.....+-+.|..+.|.+.|.+....-+..|.+-+....--.+ .+.+.. ... |... |...+. .+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-~e~~~~----l~~-~l~~-~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-IEILSI----LVV-GLPS-DMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-HHHHHH----HHh-cCcc-cchHHHHHHHHH
Confidence 333334444455667888888888877665555555554443322222 222211 111 1111 211111 2334
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHH
Q 005732 227 ACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELI 306 (680)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 306 (680)
++......+++.+-.......|++.+...-+....+.-...|+++|+.+|+++.+.++--.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------------------- 296 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL------------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-------------------
Confidence 4555567777777777777777776666655555666667777777777777762222110
Q ss_pred HHHhccCChhHHHHHHHHHhccCChh-hHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHH
Q 005732 307 FNRLTEANSISYNSMIKGYAVYGQVD-DSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQL 385 (680)
Q Consensus 307 ~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 385 (680)
.|..+|+.++-.-....... .|..++. +- +--+.|...+..-|.-.++.++|...
T Consensus 297 ------~dmdlySN~LYv~~~~skLs~LA~~v~~-id-----------------KyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 297 ------DDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID-----------------KYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred ------hhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc-----------------cCCccceeeehhHHHHHHhHHHHHHH
Confidence 12223333322211111111 1111111 00 11223334444444445555555555
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 005732 386 YMTMRKLAIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--- 461 (680)
Q Consensus 386 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 461 (680)
|++..+.+ |. ...|+.+.+-|....+...|.+.++.+++.. |-|-..|..|.++|...+...-|.-.|++...
T Consensus 353 FkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 353 FKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 55554422 22 2234444444444555555555555554444 55666666666666666666666666665542
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh----cCCCCC--hh
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS----YGVVPT--LE 535 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~ 535 (680)
.|...|.+|..+|.+.++.++|++-|.+....|- .+...+..|...+-+.++.++|...|++.++ .|...+ ..
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 4566666666666666666677776666666542 2456666666666666666666666665552 122211 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIK 558 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~ 558 (680)
...-|..-+.+.+++++|..+..
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHH
Confidence 11223344555566666555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-10 Score=104.61 Aligned_cols=144 Identities=17% Similarity=0.090 Sum_probs=69.8
Q ss_pred HcCCChHHHHHHHhhhcC---CchhHHHHHHHHHHhcCChhhHHHHhccCCC----CCeeeHHHHHHHHHhCCCChHHHH
Q 005732 130 ANCFEIEEAKRVFDELHE---DNELLWSLMLVGYVQCNLMSDAFDVFIKMPK----KDVVVWTKLISGYAKSVDGCEKAL 202 (680)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~ 202 (680)
...+++..|..+|+.... .+...|...+..-+++..+..|..++++... -|..-|. .+..=-.-|+ ...|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgN-i~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGN-IAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcc-cHHHH
Confidence 334455555555555543 2344455555555555555555555554331 1211111 1111112234 45555
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC
Q 005732 203 KLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 203 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (680)
++|++-.+-. | +...+.+.|+.-.+-..++.|..+++..+-- .|++..|-.....-.++|....|..+|....
T Consensus 162 qiferW~~w~--P-~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 162 QIFERWMEWE--P-DEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHcCC--C-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555554432 2 5555555555555555555555555555432 3555555555555555555555555555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-11 Score=111.92 Aligned_cols=426 Identities=12% Similarity=0.105 Sum_probs=306.9
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHH
Q 005732 229 ARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAEL 305 (680)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 305 (680)
...+++..|..+|+..+... ..+...|...+.+-.++..+..|..++++.. |.....|...+..=-..|++..|.+
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 35567778888888887765 4567778888888888888889998888876 3333333444555556788999999
Q ss_pred HHHHhcc--CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHH
Q 005732 306 IFNRLTE--ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKAL 383 (680)
Q Consensus 306 ~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 383 (680)
+|++-.+ |+..+|.+.++.=.+-+.++.|..++++..-. .|++.+|--....-.++|....|.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---------------HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---------------HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---------------cccHHHHHHHHHHHHhcCcHHHHH
Confidence 9988877 89999999999989999999999999887653 578888888888888899999999
Q ss_pred HHHHHHHHCCCCCChh----hHHHHHHHhcccCChHHHHHHHHHHHhcCCCch--HhHHHHHHHHHHhcCChHHHHHHH-
Q 005732 384 QLYMTMRKLAIDRTRS----TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESN--VYVGTSLVDMYSRCGSINDAQASF- 456 (680)
Q Consensus 384 ~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~- 456 (680)
.+|....+. -.|.. .+.++..--.+...++.|.-+++-.++.- +.+ ...|..+...--+-|+........
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 998887652 12222 33333333345667788888888887763 222 455555555555566655544433
Q ss_pred -------hcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--H---HHHHH--HHH---hccCCHH
Q 005732 457 -------SSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA--T---FVGVL--SAC---VRAGLVN 516 (680)
Q Consensus 457 -------~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~---~~~ll--~~~---~~~g~~~ 516 (680)
+...+ -|-.+|--.++.-...|+.+...++|++++.. ++|-.. . |..|- -+| ....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 22222 35567777777777789999999999999874 455321 1 11111 111 3578899
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHH----HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 517 EGMKIFRSMKSYGVVPTLEHYTCVVDL----LGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
.+.++++...+ -++....+|..+--. ..++.++..|.+++-.. |.-|-..++...+..-.+.++++....+|++
T Consensus 384 rtr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 384 RTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999887 345555666544333 34788999999999876 7889999999888888899999999999999
Q ss_pred HHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHH
Q 005732 592 MFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTA 671 (680)
Q Consensus 592 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (680)
.++-.|.+-.+|...+.+-...|+++.|..+++-..++...--|..-| ..-..|.-..+.+...+.+|+.|...+.
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw----kaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW----KAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH----HHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999888764322222111 1113466666788889999998888777
Q ss_pred HhhhcccC
Q 005732 672 NLNSVVLF 679 (680)
Q Consensus 672 ~~~~~~~~ 679 (680)
-.+.=|+|
T Consensus 539 h~kvWisF 546 (677)
T KOG1915|consen 539 HVKVWISF 546 (677)
T ss_pred cchHHHhH
Confidence 66655554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-12 Score=127.47 Aligned_cols=280 Identities=12% Similarity=0.073 Sum_probs=217.0
Q ss_pred ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCChhhHHHHHHH
Q 005732 330 QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAI--DRTRSTFSVLFHA 407 (680)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~ 407 (680)
+..+|...|.++...- ..+......+..+|...+++++|.++|+.+.+... .-+..+|.+.+..
T Consensus 334 ~~~~A~~~~~klp~h~--------------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWH 399 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--------------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWH 399 (638)
T ss_pred HHHHHHHHHHhhHHhc--------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 5678888888844432 33445566788899999999999999999987431 1244567777765
Q ss_pred hcccCChHHHHHHH-HHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCChhHH
Q 005732 408 CSCLGSLQQGQLLH-AHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSP---NVAAWTALMNGYSHHGLGSEA 483 (680)
Q Consensus 408 ~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 483 (680)
+-+ +-+...+ +.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+. ...+|+.+.+-+.....+|.|
T Consensus 400 Lq~----~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 400 LQD----EVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKA 474 (638)
T ss_pred HHh----hHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhH
Confidence 432 1222222 3333443 778899999999999999999999999998863 456888888888899999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005732 484 VLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P 561 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 561 (680)
...|+..+. +.|+ -..|..+...|.+.++++.|.-.|+++.+.++. +....-.+...+.+.|+.++|+.+++++ .
T Consensus 475 ~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 475 MKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 999999876 4444 456667788899999999999999999875532 4556667788899999999999999998 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 562 IEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 562 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
..| |+..-..-+..+...+++++|+..++++.++-|++...+..++.+|.+.|+.+.|+.-+.-+.+..+
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 333 5555555666677889999999999999999999999999999999999999999988877766543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=128.69 Aligned_cols=247 Identities=15% Similarity=0.108 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcC--CCchHhHHHHHHHHHHhcCChHHHHH
Q 005732 377 NLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTP--FESNVYVGTSLVDMYSRCGSINDAQA 454 (680)
Q Consensus 377 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (680)
-+..+|+..|.+.... +.-+......+..+|...+++++++.+|+.+.+.. .-.+...|.+.+--+-+.=...---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567899999985443 33444667778899999999999999999998763 12355666665543322111111111
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 005732 455 SFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT 533 (680)
Q Consensus 455 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (680)
-+-......+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+....++|.|...|+.... .+
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~ 485 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD 485 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence 12222246688999999999999999999999999999 667 578888888888889999999999998874 34
Q ss_pred hhHHH---HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 534 LEHYT---CVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 534 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
+..|+ .|...|.+.++++.|+-.|+++ .+.| +......++..+.+.|+.++|++++++++-++|.++..-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 44554 5677899999999999999998 6677 56677778888899999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHhhCC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++...+++++|+..++++++.-
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999998753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-08 Score=99.80 Aligned_cols=586 Identities=13% Similarity=0.121 Sum_probs=355.4
Q ss_pred hhhhcccCccchhhHHHHHhhcCCChhHHHHhhccCC---CCChhhHHHHHHHHHc---CC-----C-------hhHHHH
Q 005732 9 QTLMTQETLIVSTNKAITECGRNGQLVTARNLFDQMP---IRTVVSWNTMLCGYSK---WA-----K-------FDESLS 70 (680)
Q Consensus 9 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~---~~-----~-------~~~a~~ 70 (680)
..++.++-++-+|-.-|..-...- ..+-.-+|++.. ..+...|...|..-.. .. . ++.++.
T Consensus 18 eEilRnp~svk~W~RYIe~k~~sp-~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv 96 (835)
T KOG2047|consen 18 EEILRNPFSVKCWLRYIEHKAGSP-DKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLV 96 (835)
T ss_pred HHHHcCchhHHHHHHHHHHHccCC-hHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Confidence 345666777777777777655421 234444555432 2244455555522111 10 1 222222
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCc
Q 005732 71 LVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKS-GYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDN 149 (680)
Q Consensus 71 ~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 149 (680)
.+.+|. ..+..-++.+...|+.....+.++..+.. .++.-..+|...+......|-++.+.+++....+-+
T Consensus 97 ~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~ 168 (835)
T KOG2047|consen 97 FMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA 168 (835)
T ss_pred HHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 222222 23455555666778888888888777654 455566778888888888888899999999998888
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhccCCCC----------CeeeHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCCCC
Q 005732 150 ELLWSLMLVGYVQCNLMSDAFDVFIKMPKK----------DVVVWTKLISGYAKSVDGCEK---ALKLFRWMRESGENMP 216 (680)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~~~~~~~---a~~~~~~m~~~~~~~p 216 (680)
+..-+..|..+++.+++++|.+.+...... +-..|+.+-....++.+ .-. .-.+++.+... .+
T Consensus 169 P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~-~~~slnvdaiiR~gi~r--ft- 244 (835)
T KOG2047|consen 169 PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD-KVQSLNVDAIIRGGIRR--FT- 244 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc-hhcccCHHHHHHhhccc--Cc-
Confidence 888888999999999999999888876532 33456666666666533 111 22233333221 11
Q ss_pred Cc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCC----------------------CHHHH
Q 005732 217 NE--YTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCE----------------------AFDGA 272 (680)
Q Consensus 217 ~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A 272 (680)
|. ..+.+|..-|.+.|.++.|..++++.+..- .+..-+..+.+.|+... +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 32 457888889999999999999998887763 33444444444443321 12223
Q ss_pred HHHHhhcCC------------CccchhhH-HHHHHHhcCCHHHHHHHHHHhcc---C------ChhHHHHHHHHHhccCC
Q 005732 273 MRVYDRLEN------------PCLNASNS-LINGLISMGRIEDAELIFNRLTE---A------NSISYNSMIKGYAVYGQ 330 (680)
Q Consensus 273 ~~~~~~~~~------------~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~ll~~~~~~~~ 330 (680)
+.-|+.+.. .++..... +-+.-+..|+..+-...+.+... | -...|..+.+.|-..|+
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 333333320 11100000 11112234556666666666654 2 12368888999999999
Q ss_pred hhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--------------
Q 005732 331 VDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR-------------- 396 (680)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-------------- 396 (680)
.+.|..+|++..+...... ..-..+|..-...-.++.+++.|+++++......-.|
T Consensus 403 l~~aRvifeka~~V~y~~v----------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTV----------EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHHHHHhhcCCccch----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 9999999999988553110 1113456666677778889999999988875422111
Q ss_pred ---ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCH-HHHH
Q 005732 397 ---TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNV-AAWT 468 (680)
Q Consensus 397 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~ 468 (680)
+...|...+..-...|-++....+++.+++..+.....+.| ....+-...-++++.+++++-.. |++ ..|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 12234444555556678888999999999887543333322 23334455668899999998775 554 3676
Q ss_pred HHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHHhcCCCC--ChhHHHHHH
Q 005732 469 ALMNGYSH---HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC--VRAGLVNEGMKIFRSMKSYGVVP--TLEHYTCVV 541 (680)
Q Consensus 469 ~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 541 (680)
.-+.-+.+ ....+.|..+|++..+ |+.|...-+..|+-+- .+-|-...|+.+++++... +++ -...|+.+|
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I 629 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 65554433 3467999999999999 6777643333333222 3458888999999997743 222 245677766
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHcC-CCC-CCchHHHHHHHHHhcCC
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIELDAVVWGA---LLSACWFWMNMEVGERAAQKMFGL-DKK-PISAYVILSNIYAVLGK 615 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~ 615 (680)
.-....=-.....+++++. ..-|+...-.. ....-.+.|.+++|..+|...-+. +|. ++..|...-..-.+.|+
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 5544332333344445444 23344433322 233345789999999999988775 555 45667787778888898
Q ss_pred chHHHHH
Q 005732 616 WGKKMDI 622 (680)
Q Consensus 616 ~~~A~~~ 622 (680)
-+.-.+.
T Consensus 710 edT~keM 716 (835)
T KOG2047|consen 710 EDTYKEM 716 (835)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-11 Score=120.05 Aligned_cols=221 Identities=14% Similarity=0.015 Sum_probs=144.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHH-------HHHHH
Q 005732 370 ISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGT-------SLVDM 442 (680)
Q Consensus 370 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~ 442 (680)
...+...|+++.|.+.++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+...... .++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444555555666666655555543 1233345555555555666666666665555554322222111 11111
Q ss_pred HHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHH
Q 005732 443 YSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATF---VGVLSACVRAGLVN 516 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~ 516 (680)
-......+...+.++.... .++..+..+...+...|++++|.+++++..+. .||.... ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1112223444455555543 47788888999999999999999999999984 4554321 11222234467888
Q ss_pred HHHHHHHHHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 517 EGMKIFRSMKSYGVVPTL--EHYTCVVDLLGRSGHLHEAEEFIKD--M-PIELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
.+.+.+++..+.. +-++ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999998888543 3344 6677899999999999999999994 3 5789999899999999999999999999998
Q ss_pred HHc
Q 005732 592 MFG 594 (680)
Q Consensus 592 ~~~ 594 (680)
.+.
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-14 Score=134.15 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=56.4
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCC
Q 005732 188 ISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCE 267 (680)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (680)
...+.+.|+ +++|++++.+.......|.|...+..+...+...++.+.|...++.+...+.. ++..+..++.. ...+
T Consensus 15 A~~~~~~~~-~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGD-YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 344445555 56666666443332212213333344444445555666666666666554422 34444444444 4555
Q ss_pred CHHHHHHHHhhcC--CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc-----CChhHHHHHHHHHhccCChhhHHHHHhh
Q 005732 268 AFDGAMRVYDRLE--NPCLNASNSLINGLISMGRIEDAELIFNRLTE-----ANSISYNSMIKGYAVYGQVDDSKRLFEK 340 (680)
Q Consensus 268 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 340 (680)
++++|.+++...- .+++..+...+..+...++++++..+++.+.. .+...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554432 22333334444444444555444444444332 2233344444444444444444444444
Q ss_pred cCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHH
Q 005732 341 MPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLL 420 (680)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 420 (680)
..+.+ |.|....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...
T Consensus 172 al~~~--------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 172 ALELD--------------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHH---------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHcC--------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccc
Confidence 44433 3334444444444444444444444444443322 22233333444444444444444444
Q ss_pred HHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 421 HAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
++...+.. +.|+.....+..++...|+.++|.++.
T Consensus 237 ~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 237 LEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHT------------
T ss_pred cccccccc-ccccccccccccccccccccccccccc
Confidence 44444433 334444444444444444444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-11 Score=113.87 Aligned_cols=500 Identities=12% Similarity=0.054 Sum_probs=250.5
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQMPI--RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILS 92 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~ 92 (680)
+.+..-+..+.+-+..+.++..|.-+-+++.. .|...---+.+++.-.|++++|..++..-.-. +.|..+......
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34455556666666666666666666555531 22222223466677777777777776654322 335556666666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcC-C---ChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhh
Q 005732 93 VCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANC-F---EIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSD 168 (680)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g---~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (680)
.+.+..++++|..++... .+.-+++.+ |.+. + ..+.+.+ +.+..-....+-.-.+.|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~---~~~~~~f~y------y~~~~~~~l~~n~~~~--~~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRG---HVETNPFSY------YEKDAANTLELNSAGE--DLMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhccc---chhhcchhh------cchhhhceeccCcccc--cccccchhceeeeeeehhhhhccHHH
Confidence 666667777776666522 000011111 0000 0 0000100 00000011112222234555666777
Q ss_pred HHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005732 169 AFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG 248 (680)
Q Consensus 169 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 248 (680)
|...+.+....|+..|..+.......--..++-.++|..+--.-....+......+.........-+.....-+.-.-.+
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIG 239 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhh
Confidence 77777766666666555544333222111223333333210000000022222222222211110011111111111123
Q ss_pred CCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CC-hhHHHHHH
Q 005732 249 FEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--AN-SISYNSMI 322 (680)
Q Consensus 249 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll 322 (680)
...+........+-+...+++.+..++++.+. |....++..-|.++...|+..+-..+=.++.+ |+ ..+|-.+.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34455566666666777778888888877766 66666666667777777776666666666655 33 44677777
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
-.|...|+.++|.+.|.+...-+ +.-...|-.....|+-.|..++|+..+...-+.= +-...-+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD--------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~L 384 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD--------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSL 384 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC--------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHH
Confidence 66666677777777777766554 3445567777777777777777777666654421 11111122
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSE 482 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 482 (680)
-+.--|.+.++.+.|.++|.+..... |.|+.+.+-+.-..-..+.+.+|..+|
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f-------------------------- 437 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYF-------------------------- 437 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHH--------------------------
Confidence 22333445555666666665555544 445555555544444445555555544
Q ss_pred HHHHHHHHHHC----C-CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 483 AVLLFEIMLEQ----D-IV-PNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 483 A~~~~~~m~~~----~-~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
+..... + -+ --..+++.|..+|.+.+.+++|+..+++..... +.+..++.++.-.|...|+++.|.+.
T Consensus 438 -----~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 438 -----QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred -----HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHH
Confidence 433310 0 00 123445555566666666666666666665432 33555666666666666666666666
Q ss_pred HHhC-CCCCCHHHHHHHHHH
Q 005732 557 IKDM-PIELDAVVWGALLSA 575 (680)
Q Consensus 557 ~~~~-~~~p~~~~~~~l~~~ 575 (680)
|.+. .+.|+..+...++..
T Consensus 512 fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 512 FHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHhcCCccHHHHHHHHH
Confidence 6655 455655554444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-10 Score=104.47 Aligned_cols=442 Identities=12% Similarity=0.060 Sum_probs=240.0
Q ss_pred eeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHH
Q 005732 181 VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALI 260 (680)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 260 (680)
...+-.|.....--|. +.+|..+.... |.++-.-..+++..-+.++-++.....+.+.+. .....+|.
T Consensus 91 ~el~vnLAcc~FyLg~-Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLA 158 (557)
T KOG3785|consen 91 AELGVNLACCKFYLGQ-YIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLA 158 (557)
T ss_pred cccchhHHHHHHHHHH-HHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHH
Confidence 3333333333333344 56665554332 113344444555555666666666666555432 23334455
Q ss_pred HHhhcCCCHHHHHHHHhhcC--CCccchhh-HHHHHHHhcCCHHHHHHHHHHhcc--CChh-HHHHHHHHHhccCChhhH
Q 005732 261 EFYCGCEAFDGAMRVYDRLE--NPCLNASN-SLINGLISMGRIEDAELIFNRLTE--ANSI-SYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a 334 (680)
......-++.+|.+++.++. .+.....| -+.-+|.+..-++-+.+++.-... ||+. +.|.......+.-.-..|
T Consensus 159 svhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 159 SVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchh
Confidence 55555566777777777776 22222222 244556666666766666666554 4433 233333223332222222
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQN-----NLHEKALQLYMTMRKLAIDRTRSTFSVLFHACS 409 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 409 (680)
+.-.+.+...+. . .| ..+.-++++ ..-+.|++++-.+.+ +-|. .-..++-.|.
T Consensus 239 e~E~k~ladN~~--------------~---~~-~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL~iYyL 296 (557)
T KOG3785|consen 239 EDEKKELADNID--------------Q---EY-PFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNLIIYYL 296 (557)
T ss_pred HHHHHHHHhccc--------------c---cc-hhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhheeeec
Confidence 222222222110 0 01 112222222 234566666555443 1121 2223444566
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHH-----HHHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCC
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSL-----VDMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGYSHHGL 479 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 479 (680)
+.++..+|..+.+.+.-. .|-......+ .+-......+.-|.+.|+-.-+ .++....++..++.-..+
T Consensus 297 ~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 297 NQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred ccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 677777776666554211 1211111111 1111222234556666654432 223344556666677777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005732 480 GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKD 559 (680)
Q Consensus 480 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (680)
+++.+..+.....--...|...+ .+..+.+..|.+.+|.++|-++....++.+......|..+|.+.+..+-|.+++-+
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 88888888877764333333333 46788888899999999998877555554444445667888899999999999888
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcee
Q 005732 560 MPIELDAVVWGALL-SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCS 638 (680)
Q Consensus 560 ~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 638 (680)
+..+.+..+...++ .-|.+.+.+--|-..|+.+-.++|.+ +.| .|+.....-++..+-.....+.|+-
T Consensus 454 ~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~~- 522 (557)
T KOG3785|consen 454 TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAGLFRQLANHKTDPIPIS- 522 (557)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHHHHHHHHcCCCCCCchh-
Confidence 86444555554444 46888888888888888888888876 444 4566666667766665544444442
Q ss_pred EEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 639 WIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
++..+++.... ..|..++.+...++.|....+
T Consensus 523 --~~rEVvhllr~--~~nsq~E~mikvvrkwa~~~~ 554 (557)
T KOG3785|consen 523 --QMREVVHLLRM--KPNSQCEFMIKVVRKWAETHN 554 (557)
T ss_pred --HHHHHHHHHHh--CCCchHHHHHHHHHHHHHhcC
Confidence 33444443322 257777888888888776544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-10 Score=116.29 Aligned_cols=508 Identities=12% Similarity=0.068 Sum_probs=284.8
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhH
Q 005732 46 IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGL 125 (680)
Q Consensus 46 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (680)
.||.+||..+|.-||..|+.+.|- +|..|.-...+-+...|+.++.+....++.+.++ .|...+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 688899999999999999999999 9999998888888999999999999999987776 7889999999
Q ss_pred HHHHHcCCChHH---HHHHHhhhcC---------Cch-------------hHHHHHHHHHHhcCChhhHHHHhccCCCC-
Q 005732 126 LFFYANCFEIEE---AKRVFDELHE---------DNE-------------LLWSLMLVGYVQCNLMSDAFDVFIKMPKK- 179 (680)
Q Consensus 126 ~~~~~~~g~~~~---a~~~~~~~~~---------~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 179 (680)
..+|.+.||... +.+.+..+.. +.. ..-...+.-..-.|-++.+++++..++..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998654 3332322221 000 01233455566678888889988877732
Q ss_pred -CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHH
Q 005732 180 -DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGA 258 (680)
Q Consensus 180 -~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 258 (680)
+. +....++-+.....++++-..+-....+ .| ++.+|..++......|+.+.|..++..|.+.|++.+..-+..
T Consensus 170 ~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~-~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 170 WNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---AP-TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred ccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CC-ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 21 2222355555554434554444444433 34 999999999999999999999999999999999999998888
Q ss_pred HHHHhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 259 LIEFYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
|+-+ .++...+..+++.|. .|+..++......+..+|....+... .+....+..-+..-.-.| ..|
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg--~~a 314 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG--LLA 314 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--cHh
Confidence 8765 677777777777776 67777777766666665552222111 133333333333322233 222
Q ss_pred HHHHhhcCcCCcc--hhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCC-ChhhHHHHHHHhc
Q 005732 335 KRLFEKMPHRSII--SLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLA--IDR-TRSTFSVLFHACS 409 (680)
Q Consensus 335 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p-~~~~~~~ll~~~~ 409 (680)
.+.++.-...-+. +...++ .+.......|...+. ...+|+.+...++-..|..-- ..+ +...|..++.-|.
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fL---lg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFL---LGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHH---hccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 2222111110000 000000 001112233332222 233677777766666664311 122 1223433333332
Q ss_pred ccCChHHHHHHHH--HHHhc--CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---------------CCHHHHHHH
Q 005732 410 CLGSLQQGQLLHA--HLVKT--PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---------------PNVAAWTAL 470 (680)
Q Consensus 410 ~~~~~~~a~~~~~--~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~l 470 (680)
+.-.......++. +.+.. +....+. +.....+. +...+.+-+..+.. +-...-+.+
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~----vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPR----VSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHH----HHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 2211111111111 11110 0000000 11111110 11111111111110 111122344
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH--hcCCCCChhHHHHHHHHHHhcC
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK--SYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g 548 (680)
+..++..-+..+++..-++.... ..| ..|..|+.-+...+..+.|..+..+.. +..+..|...+..+.+.+.+.+
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 44555555555555443333321 112 456777777777777777777777776 3345556666777777888888
Q ss_pred ChHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 549 HLHEAEEFIKDMP----IELD-AVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 549 ~~~~A~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
...++.++++++. ..|+ ..++.-++...+..|+.+...+..+-+
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 8888888777772 3332 333344444455566666655555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-10 Score=109.11 Aligned_cols=424 Identities=13% Similarity=0.011 Sum_probs=256.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCC--CCC-eeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHh
Q 005732 153 WSLMLVGYVQCNLMSDAFDVFIKMP--KKD-VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACA 229 (680)
Q Consensus 153 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 229 (680)
+-....-|.++|++++|++.+.+.. .|| ++.|...-..|...|+ |+++.+.-.+..+.+ |.-...+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd-~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGD-WEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhh-HHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 3344556778888888888888765 466 6778888888888888 899888887777654 312344444555666
Q ss_pred ccCChhhHHHHHHHHHHh-CCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHH
Q 005732 230 RLGAFCEGKVVHGLLIKC-GFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFN 308 (680)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 308 (680)
..|++.++..-..-..-. |+. +..+ ..+++--.+.--...+.+-+.+-.+|..+. ...+..|...=..+--.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~~~---- 267 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADPKP---- 267 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccccc----
Confidence 677777665333222111 111 1111 111111111111122333333212333333 44444443221100000
Q ss_pred HhccCChhHHHHHHHHHhc-----cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC------hhHHHHHHHHHHhCC
Q 005732 309 RLTEANSISYNSMIKGYAV-----YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN------PVTWNSMISGYVQNN 377 (680)
Q Consensus 309 ~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~li~~~~~~~ 377 (680)
.+..+.......+..++.. ...+..+...+.+-....... .+....| ..+.......+.-.|
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~-------~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESS-------LSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhh-------ccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 0000111111111111110 012222222222211100000 0000011 112222222344578
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHh
Q 005732 378 LHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFS 457 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (680)
+.-.|.+-|+..+.....++.. |-.+...|....+.++....|....+.+ +.++.+|..-.+++.-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998855433332 7777888999999999999999999887 7778888888888889999999999999
Q ss_pred cCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--
Q 005732 458 SISSP---NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-- 531 (680)
Q Consensus 458 ~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-- 531 (680)
+..+. +...|-.+.-+..+.+++++++..|++.+++ -|+ +..|+.....+...++++.|.+.|+...+....
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 98863 3456666666677888999999999999985 354 788999999999999999999999998854322
Q ss_pred ---CC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 532 ---PT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 532 ---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
.+ +.+...++..- =.+++..|++++.+. .+.| ....+..+...-...|+.++|+++|++...+-..
T Consensus 497 ~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred cccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 11 22222222222 248999999999988 5666 5778899999999999999999999998776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-11 Score=108.40 Aligned_cols=293 Identities=11% Similarity=0.048 Sum_probs=230.0
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh---hhHHHH
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR---STFSVL 404 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l 404 (680)
+.+.++|..+|-+|.+.+ +.+..+.-+|.+.|-+.|..++|+.+-+.+.++.-.+.. .....+
T Consensus 48 s~Q~dKAvdlF~e~l~~d--------------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--------------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred hcCcchHHHHHHHHHhcC--------------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 567899999999998876 566777888999999999999999999998764322211 234456
Q ss_pred HHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------HHHHHHHHHHHHH
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPN--------VAAWTALMNGYSH 476 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~ 476 (680)
..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-.++.+.+ ...|.-+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 677888999999999999999876 4555667889999999999999999988766422 2355666677777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
..+.+.|..++.+..+.+.+ ....-..+.......|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88999999999999985432 23334456677889999999999999999888777788889999999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh--cCCchHHHHHHHHHhhCCCcc
Q 005732 557 IKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV--LGKWGKKMDIRKRLTHLEVKK 633 (680)
Q Consensus 557 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~ 633 (680)
+.++ ...+.+.....+........-.+.|...+.+-+...|.-...+..+..-+.. .|++.+.+.+++.|....++.
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 9887 5566666666666666666778888888888888899864444444444433 467999999999999888887
Q ss_pred CCc
Q 005732 634 DPG 636 (680)
Q Consensus 634 ~~~ 636 (680)
.|.
T Consensus 352 ~~~ 354 (389)
T COG2956 352 KPR 354 (389)
T ss_pred cCC
Confidence 774
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-10 Score=107.17 Aligned_cols=281 Identities=13% Similarity=0.081 Sum_probs=223.0
Q ss_pred ccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005732 327 VYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFH 406 (680)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 406 (680)
..|++..|+++..+..+.+ +.....|..-+.+--+.|+.+.+-.++.+..+..-.++.........
T Consensus 96 ~eG~~~qAEkl~~rnae~~--------------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG--------------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC--------------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 4689999999999877766 44566777777788889999999999999987543555566667777
Q ss_pred HhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----------CHHHHHHHHHHHH
Q 005732 407 ACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSP-----------NVAAWTALMNGYS 475 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~ 475 (680)
.....|+.+.|..-..++.+.+ +-++.+.....++|.+.|++.....++.++.+. ...+|+.+++-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999988 778888999999999999999999999988751 1346777777666
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005732 476 HHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEE 555 (680)
Q Consensus 476 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 555 (680)
..+..+.-...|+..... .+-++..-.+++.-+.+.|+.++|.++.++..+.+..|....+ -.+.+-++.+.-++
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k 315 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIK 315 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHH
Confidence 666666656667665543 3445666677788889999999999999999988877762221 23445566665555
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 556 FIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 556 ~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..+.. . .+.++..+.+|+..|.+++.|.+|..+++.+++..|+. ..|..++.++.+.|+..+|.++.++...
T Consensus 316 ~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 316 AAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55544 2 23356888999999999999999999999999999986 8899999999999999999999988763
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-08 Score=98.44 Aligned_cols=508 Identities=12% Similarity=0.095 Sum_probs=261.3
Q ss_pred chhhHHHHHhhcCCChhHHHHhhccCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 005732 19 VSTNKAITECGRNGQLVTARNLFDQMP-----IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSV 93 (680)
Q Consensus 19 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~ 93 (680)
..|-.-++.+.++|++-.-++.|+... ..-...|...+.-....+-++-+..+|++..+. ++..-.--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 445555666666666666666665432 113345555555555566666666666665542 22224444445
Q ss_pred HhccCChHHHHHHHHHHHHhC------CCCcchhhhhHHHHHHcCCCh---HHHHHHHhhhcCC--c--hhHHHHHHHHH
Q 005732 94 CAQLNSLIDGKQIHCLVLKSG------YECFEFVGSGLLFFYANCFEI---EEAKRVFDELHED--N--ELLWSLMLVGY 160 (680)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~--~--~~~~~~l~~~~ 160 (680)
++..+++++|.+.+..++... .+.+...|.-+.+..++.-+. -....++..+..+ | ...|.+|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 555566666665555554321 233344444444444443221 1223333333321 1 23466666666
Q ss_pred HhcCChhhHHHHhccCCCC--CeeeHHHHHHHHHhC----------------CC-----ChHHHHHHHHHHHHcCCC---
Q 005732 161 VQCNLMSDAFDVFIKMPKK--DVVVWTKLISGYAKS----------------VD-----GCEKALKLFRWMRESGEN--- 214 (680)
Q Consensus 161 ~~~~~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~----------------~~-----~~~~a~~~~~~m~~~~~~--- 214 (680)
++.|.++.|.+++++.... .+.-|..+..+|++- ++ +++-.+.-|+.+......
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 6666666666666654321 222233333322221 10 012222223333222110
Q ss_pred -------CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC------CchHHHHHHHHhhcCCCHHHHHHHHhhcCC
Q 005732 215 -------MPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEF------DESIGGALIEFYCGCEAFDGAMRVYDRLEN 281 (680)
Q Consensus 215 -------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 281 (680)
|.+..++..-.. ...|+..+....+.++.+. +.| -...|..+.+.|-..|+++.|..+|++...
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 012222222111 1234444555555555543 111 123566777777778888888888877762
Q ss_pred CccchhhHHHHHH-------HhcCCHHHHHHHHHHhcc-C--------------------ChhHHHHHHHHHhccCChhh
Q 005732 282 PCLNASNSLINGL-------ISMGRIEDAELIFNRLTE-A--------------------NSISYNSMIKGYAVYGQVDD 333 (680)
Q Consensus 282 ~~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~-~--------------------~~~~~~~ll~~~~~~~~~~~ 333 (680)
..-..-..+...+ .+..+++.|+.+++.... | +...|...++.--..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 2222223333333 345566777776666554 2 22344555555556677777
Q ss_pred HHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhc---
Q 005732 334 SKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS-TFSVLFHACS--- 409 (680)
Q Consensus 334 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~--- 409 (680)
...+++++....+. ++..-....-.+-.+.-++++.++|++-...=..|+.. .|+..+.-+.
T Consensus 496 tk~vYdriidLria--------------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIA--------------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHHHHhcC--------------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 88888888776652 22222222222344556778887776654432234432 3444333332
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHHH--HHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCChhH
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLV--DMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGYSHHGLGSE 482 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 482 (680)
.....+.|..+|++..+ |++|...-+--|+ ..--+-|....|++++++... .-...||..|.-....=.+..
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 23467888999998888 6565433222221 112234777788888887663 223467777765544444566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH---HHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcCCh
Q 005732 483 AVLLFEIMLEQDIVPNAATFVGVLS---ACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 483 A~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
...+|++.++ .-|+...-...+. .=.+.|..+.|..++.... -..+..+...|.+.=..=.+.|+-
T Consensus 641 TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 641 TREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred cHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 6777888877 4566554443333 2356788888888887666 334455666677666666677773
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-10 Score=105.44 Aligned_cols=276 Identities=12% Similarity=0.085 Sum_probs=165.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHH
Q 005732 194 SVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAM 273 (680)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (680)
.|+ |..|.++..+-.+.+..| ...|..-..+.-..|+.+.+-..+.++.+..-.++..+.-+........|+++.|.
T Consensus 97 eG~-~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGD-FQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCc-HHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 366 788888887777766543 44566666667777888888888887776643555666666777777777777777
Q ss_pred HHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----C-------ChhHHHHHHHHHhccCChhhHHHHHh
Q 005732 274 RVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE----A-------NSISYNSMIKGYAVYGQVDDSKRLFE 339 (680)
Q Consensus 274 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~~~ll~~~~~~~~~~~a~~~~~ 339 (680)
.-++++. +..+........+|.+.|++.....++..+.+ . ...+|..+++-....+..+.-...++
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 7766655 45555556666777777777777777777765 1 12356666666666666666555666
Q ss_pred hcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHH
Q 005732 340 KMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQL 419 (680)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 419 (680)
.....- ..++..-..++.-+.+.|+.++|.++..+..+.+..|+ ....-.+.+.++...-++
T Consensus 254 ~~pr~l--------------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k 315 (400)
T COG3071 254 NQPRKL--------------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIK 315 (400)
T ss_pred hccHHh--------------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHH
Confidence 554432 34455566667777777777777777777776665555 122223445555555555
Q ss_pred HHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005732 420 LHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIML 491 (680)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 491 (680)
..+.-.+.. +.++..+.+|...|.+.+.+.+|.+.|+...+ |+..+|+.+..++.+.|+..+|.+..++..
T Consensus 316 ~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 316 AAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 554444432 33334555555555555555555555544332 444555555555555555555554444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=104.43 Aligned_cols=226 Identities=14% Similarity=0.085 Sum_probs=124.5
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCC-C--chHHHHH
Q 005732 183 VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEF-D--ESIGGAL 259 (680)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l 259 (680)
.|-.=++.+.. .+ .++|.++|-+|.+.... +..+-.+|.+.+.+.|..+.|..++..+.++.--+ + ....-.|
T Consensus 38 ~Yv~GlNfLLs-~Q-~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 38 DYVKGLNFLLS-NQ-PDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHhHHHHHhh-cC-cchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34444444444 45 69999999999885432 56666788899999999999999999887752111 1 1223345
Q ss_pred HHHhhcCCCHHHHHHHHhhcCC-C--ccchhhHHHHHHHhcCCHHHHHHHHHHhccCChh--------HHHHHHHHHhcc
Q 005732 260 IEFYCGCEAFDGAMRVYDRLEN-P--CLNASNSLINGLISMGRIEDAELIFNRLTEANSI--------SYNSMIKGYAVY 328 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~ll~~~~~~ 328 (680)
..-|...|-+|.|+.+|..+.. + .......++..|....+|++|++.-+++...+.. .|..+...+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 5556666666777766666651 1 2233445556666666666666655555441111 233333344444
Q ss_pred CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 005732 329 GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHAC 408 (680)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 408 (680)
.+++.|..++.+..+.+ +..+..--.+.+.+...|++++|.+.++...+.+..--+.+...+..+|
T Consensus 194 ~~~d~A~~~l~kAlqa~--------------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 194 SDVDRARELLKKALQAD--------------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred hhHHHHHHHHHHHHhhC--------------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 45555555555555544 3344444444455555555555555555555444333333444444444
Q ss_pred cccCChHHHHHHHHHHHh
Q 005732 409 SCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~ 426 (680)
...|+.++....+..+.+
T Consensus 260 ~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 260 AQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 444444444444444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-09 Score=104.14 Aligned_cols=505 Identities=12% Similarity=0.048 Sum_probs=288.6
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh---ccCChHHHHHHHHHHHHhCCCCcchhh-----hhHHHHHHcC
Q 005732 61 KWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCA---QLNSLIDGKQIHCLVLKSGYECFEFVG-----SGLLFFYANC 132 (680)
Q Consensus 61 ~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~ 132 (680)
..++.+.++.-+......+...+..++..+-.++. -.++.+.+ ++-..++.-.-|...++ ..++.-+.+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777776655543 34555555 33333333333322222 2222222222
Q ss_pred CChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCC---CeeeHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005732 133 FEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKK---DVVVWTKLISGYAKSVDGCEKALKLFRWMR 209 (680)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 209 (680)
+++. -++..|..+.-++...|++..+.+.|++...- ....|+.+-..+...|. -..|+.+++.-.
T Consensus 317 ~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 317 KKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESL 384 (799)
T ss_pred hhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhc
Confidence 2222 24455666677788888888888888876542 34467777777777777 488888888776
Q ss_pred HcCCCCCCcchHHHHHHHHh-ccCChhhHHHHHHHHHHh--CC--CCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCcc
Q 005732 210 ESGENMPNEYTFDSVIRACA-RLGAFCEGKVVHGLLIKC--GF--EFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCL 284 (680)
Q Consensus 210 ~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 284 (680)
.....|+|...+...-..|. +.+..+++...-..++.. +. ......|..+.-+|...-. ..+..
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~-----------~a~~~ 453 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR-----------QANLK 453 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh-----------cCCCh
Confidence 65545656666666666665 445666666655555442 11 1122233333333321100 00000
Q ss_pred chhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCC
Q 005732 285 NASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMER 361 (680)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (680)
+ .+.....++++.+++..+ .|+.....+.--|+..++.+.|.+..++..+.+. ..
T Consensus 454 s---------eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------------~~ 511 (799)
T KOG4162|consen 454 S---------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-------------GD 511 (799)
T ss_pred H---------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------------Cc
Confidence 0 011123445556666544 2333333344456667777788777777777642 56
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC-CchHhHHHHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF-ESNVYVGTSLV 440 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 440 (680)
+...|..+.-.+...+++.+|+.+.+.....- .-|......-++.-...++.+++......+...-- .+..
T Consensus 512 ~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~------- 583 (799)
T KOG4162|consen 512 SAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV------- 583 (799)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH-------
Confidence 77778877777778888888888777665421 11111111112222235566666555554443200 0000
Q ss_pred HHHHhcCChHHHHHHHhcCC---C---CCHHHHHHHHHHHH-H--cCChhHHHHHHHHHHHCCCC--CC------HHHHH
Q 005732 441 DMYSRCGSINDAQASFSSIS---S---PNVAAWTALMNGYS-H--HGLGSEAVLLFEIMLEQDIV--PN------AATFV 503 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~---~---~~~~~~~~l~~~~~-~--~~~~~~A~~~~~~m~~~~~~--p~------~~~~~ 503 (680)
...++-....+....+. + ....++..+..-.. + .-..+.. +....+. |+ ...|.
T Consensus 584 ---q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 584 ---QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred ---hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHH
Confidence 01111222222222221 1 11222222221111 1 1111111 1111122 22 12344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMN 581 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 581 (680)
.....+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|... .+.| ++.+..+++..+...|+
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 45556777888888888877777542 345667777778888999999999988876 5666 57788999999999998
Q ss_pred HHHHHH--HHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 582 MEVGER--AAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 582 ~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
-..|.. ++..+++.+|.++++|+.+|.++.+.|+.+.|.+.|....+..
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 888888 9999999999999999999999999999999999998877643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-10 Score=108.76 Aligned_cols=198 Identities=13% Similarity=0.084 Sum_probs=162.6
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLS 507 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 507 (680)
.....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. ..+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677778888888999999988887653 346677888888999999999999999998854 224567777888
Q ss_pred HHhccCCHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEV 584 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 584 (680)
.+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 88999999999999999985432 233556777888899999999999999987 3334 56778888889999999999
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
|...++++++..|.++..+..++.++...|++++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888888889999999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-08 Score=99.56 Aligned_cols=372 Identities=13% Similarity=0.132 Sum_probs=222.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHH
Q 005732 223 SVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIED 302 (680)
Q Consensus 223 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (680)
-+..-+-+.+++..-...++..+..|. -|..++++|...|..+++-.+- .+++ +.-.=.....-||...++.-
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLke----N~yYDs~vVGkYCEKRDP~l 915 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKE----NPYYDSKVVGKYCEKRDPHL 915 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hccc----CCcchhhHHhhhhcccCCce
Confidence 344445556666677777788888884 4888999999998876543321 1111 11110222333444443333
Q ss_pred HHHHHHHhcc--------CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHH
Q 005732 303 AELIFNRLTE--------ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYV 374 (680)
Q Consensus 303 a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~ 374 (680)
|.-.|++-.- .....|....+.+.+..+.+.-.+++.+--...-......++.--....|+..-...+.++.
T Consensus 916 A~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 916 ACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred EEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 3222222111 11223455555555555555444443221110000011111111122445666677788999
Q ss_pred hCCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC-----------------------
Q 005732 375 QNNLHEKALQLYMTMRKLAI--DRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF----------------------- 429 (680)
Q Consensus 375 ~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 429 (680)
..+-+.+-+++++++.-..- .-+...-+.++-...+ .+..++.++.+++-....
T Consensus 996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh
Confidence 99999999999999864321 1111222222222222 222333333333322210
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
..+....+.|++ .-+.++.|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+. -|+..|..++...
T Consensus 1075 ~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a 1143 (1666)
T KOG0985|consen 1075 DMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVA 1143 (1666)
T ss_pred cccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHH
Confidence 112222222221 2234444444444443 3457999999999999999998876442 2677899999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
.+.|.|++..+++...++..-+|... +.|+-+|++.+++.+-++++. .|+......++.-|...|.++.|.-+|
T Consensus 1144 ~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1144 SRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999999999888766666554 478899999999988777653 588888889999999999999999888
Q ss_pred HHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 590 QKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
... +.|..|+..+...|.++.|.+.-++.-
T Consensus 1218 ~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1218 SNV--------SNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHh--------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 654 568889999999999998887765543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-11 Score=107.70 Aligned_cols=222 Identities=11% Similarity=0.018 Sum_probs=152.2
Q ss_pred HHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHH-HHHHHHHHHHcCChhH
Q 005732 406 HACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAA-WTALMNGYSHHGLGSE 482 (680)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~ 482 (680)
.+|.+.|.+.+|+..++...+. .|-+.+|-.|-.+|.+..+++.|..++.+..+ |-.++ ...+.+.+-..++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 3333444444444444433333 23333444444555555555555555554442 32222 2334555666677778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005732 483 AVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-- 560 (680)
Q Consensus 483 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 560 (680)
|.++|+...+.. ..+.....++...|.-.++++.|..+++++...|+. ++..|..+.-+|.-.++++-++.-|++.
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 888888777743 224555666666777778888888888888877754 6677777777777788888887777765
Q ss_pred -CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 561 -PIEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 561 -~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
...| -..+|..+.......||+..|.+.|+-++..+|++.+++++|+.+-.+.|+.++|..++....+..+
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 1223 3677888888888899999999999999999999999999999999999999999999999887654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-08 Score=92.30 Aligned_cols=269 Identities=11% Similarity=-0.018 Sum_probs=180.2
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 313 ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 313 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
.|......+.+.+...|+.++|+..|++..-.+ +-+........-.+.+.|+.+....+...+...
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--------------py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--------------PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--------------hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 345556666666777777777777777666544 222222233333345566666666665555432
Q ss_pred CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHH
Q 005732 393 AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTA 469 (680)
Q Consensus 393 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 469 (680)
. .-+...|..-........+++.|..+-+..++.. +.+...+-.-...+...|+.+.|.-.|..... .+..+|..
T Consensus 296 ~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 296 V-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred h-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence 1 1122222223333345566677777766666554 34444444455667778888888888876653 46778999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-hccCCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVL-SAC-VRAGLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGR 546 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 546 (680)
|+.+|...|++.+|..+-+..... +.-+..+...+. ..| .....-++|.+++++-.+. .|+ ....+.+...+..
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHh
Confidence 999999999999988877766553 233455555442 222 2334457888888877753 333 4556777888999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 547 SGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 547 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
.|..++++.++++. ...||....+.|+..+...+.+.+|...|..+++++|++.
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 99999999999987 6789999999999999999999999999999999999983
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-08 Score=89.90 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=62.2
Q ss_pred cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CHHHHH-HHHHHHHHcCChhHHHHH
Q 005732 411 LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSP---NVAAWT-ALMNGYSHHGLGSEAVLL 486 (680)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~A~~~ 486 (680)
..+++++.-++..+...-...|...+| +.++++..|.+.+|+++|-.+..| |..+|. .|.++|.+.+.++.|..+
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 344555555555544443333333333 556666666777777766666543 233443 345566666766666554
Q ss_pred HHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHhcCCCCChhHH
Q 005732 487 FEIMLEQDIVPNAATFVGV-LSACVRAGLVNEGMKIFRSMKSYGVVPTLEHY 537 (680)
Q Consensus 487 ~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (680)
+-++ +-..+..+...+ ..-|.+.+.+--|.+.|+.+... .|++..|
T Consensus 451 ~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 451 MLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 4332 212233333333 34566666666666666666653 3444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-09 Score=113.63 Aligned_cols=263 Identities=10% Similarity=0.016 Sum_probs=189.8
Q ss_pred CCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhc---------ccCChHHHHHHHHHH
Q 005732 360 ERNPVTWNSMISGYVQ-----NNLHEKALQLYMTMRKLAIDRTRS-TFSVLFHACS---------CLGSLQQGQLLHAHL 424 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~ 424 (680)
+.+...|...+.+... .+.+++|.+.|++..+. .|+.. .+..+..++. ..++.++|...++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3455556666555322 23467999999999874 45543 4444433332 335588999999999
Q ss_pred HhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-H
Q 005732 425 VKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA-A 500 (680)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~ 500 (680)
.+.. +.+...+..+...+...|++++|...|+++.+ | +...+..+...+...|++++|+..++++.+. .|+. .
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~ 407 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAA 407 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChh
Confidence 9887 77888888899999999999999999998764 3 4667888899999999999999999999984 4553 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHh
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVV-WGALLSACWF 578 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~ 578 (680)
.+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...+.++ +..|+... .+.+...+..
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 333444456678999999999999886543335666778888999999999999999987 44555443 4445555566
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.| ++|...++++++..-..+.....+..+|.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4777777777664433322333477777778888877776 8877654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-07 Score=90.96 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=46.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
++..+-..|+++.|..+++..+.+ .|+ ..-|..-.+.+.+.|++++|..++++..+.+ .+|..+-...+.-..++.
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence 445555566666666666665553 343 2333334455556666666666666655433 233333334444555566
Q ss_pred ChHHHHHHHHhC
Q 005732 549 HLHEAEEFIKDM 560 (680)
Q Consensus 549 ~~~~A~~~~~~~ 560 (680)
+.++|.++....
T Consensus 454 ~i~eA~~~~skF 465 (700)
T KOG1156|consen 454 EIEEAEEVLSKF 465 (700)
T ss_pred ccHHHHHHHHHh
Confidence 666666555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-07 Score=91.23 Aligned_cols=267 Identities=13% Similarity=0.093 Sum_probs=175.2
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
+.+......|.+|+.+++.+..+.. -..-|..+.+.|...|+++.|.++|.+.- .+
T Consensus 739 ieaai~akew~kai~ildniqdqk~---------------~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~ 794 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT---------------ASGYYGEIADHYANKGDFEIAEELFTEAD---------LF 794 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc---------------ccccchHHHHHhccchhHHHHHHHHHhcc---------hh
Confidence 4445566778888888887776542 23457777788888888888888876531 34
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChh
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGS 481 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 481 (680)
+-.|..|.+.|+++.|.++-.+.. |.......|-+-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcch
Confidence 556777888888888877755442 3344555566666666778888888888888777774 466788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP 561 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (680)
+.+++.++-.-. --..|...+..-+...|+...|.+-|-+.-+ |.+-++.|...+.|++|.++-+.-+
T Consensus 868 dmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 868 DMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccc
Confidence 888877664321 1245666777788888999998887765442 4455677888888888888776653
Q ss_pred CCCCHHHHHHHH-----------HHHHh-------------cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch
Q 005732 562 IELDAVVWGALL-----------SACWF-------------WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 562 ~~p~~~~~~~l~-----------~~~~~-------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (680)
- .+..-....+ ..+-+ .+.++-|..+-+-+.+ ...+..+..++..+...|+++
T Consensus 936 g-~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 936 G-ANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred c-ccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchh
Confidence 1 1111111111 11222 3344444444333322 233567888899999999999
Q ss_pred HHHHHHHHHhhCCCccC
Q 005732 618 KKMDIRKRLTHLEVKKD 634 (680)
Q Consensus 618 ~A~~~~~~~~~~~~~~~ 634 (680)
+|.+.+-+..+.+.-+.
T Consensus 1013 daskhyveaiklntyni 1029 (1636)
T KOG3616|consen 1013 DASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred hhhHhhHHHhhcccccc
Confidence 99999888777654443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-07 Score=93.18 Aligned_cols=465 Identities=11% Similarity=0.073 Sum_probs=220.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHH--hcCChhh
Q 005732 91 LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYV--QCNLMSD 168 (680)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 168 (680)
++-+...+++++|.+....++..+ +.+...+..-+.+....+.+++|+.+.+.-..........+=++|| +.++.|+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 344556677777777777777766 4455555666667777788888886665443221111111345555 5788888
Q ss_pred HHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 005732 169 AFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG 248 (680)
Q Consensus 169 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 248 (680)
|+..++-..+.+..+...-...+.+.++ +++|+++|+.+.+++..--+...-..++.+-.. ... +.+....
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~ 168 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVP 168 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhcc
Confidence 8888885555555566666777888888 899999999998766432111111112211111 011 1122222
Q ss_pred CCCCchHHHHHH---HHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCCh-hHHHHHHHH
Q 005732 249 FEFDESIGGALI---EFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANS-ISYNSMIKG 324 (680)
Q Consensus 249 ~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ll~~ 324 (680)
..| ..+|..+- -.+...|++.+|+++++... .+..--...++.. -+.+- ... ..-.-+.-.
T Consensus 169 ~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~--------~~~~e~l~~~d~~-eEeie-----~el~~IrvQlayV 233 (652)
T KOG2376|consen 169 EVP-EDSYELLYNTACILIENGKYNQAIELLEKAL--------RICREKLEDEDTN-EEEIE-----EELNPIRVQLAYV 233 (652)
T ss_pred CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH--------HHHHHhhcccccc-hhhHH-----HHHHHHHHHHHHH
Confidence 222 23343332 23445666666666665441 0000000000000 00000 000 011122233
Q ss_pred HhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh----HHHHHHHHHHhCCChH-HHHHHHHHHHHCCCCCChh
Q 005732 325 YAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV----TWNSMISGYVQNNLHE-KALQLYMTMRKLAIDRTRS 399 (680)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~ 399 (680)
+...|+..+|..++....+.+ ++|.. .-|.++..-....-++ .++..++.....
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~--------------~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~------- 292 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN--------------PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK------- 292 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc--------------CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH-------
Confidence 445556666666555555544 22221 1122211111111011 111111111100
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-HHHHHHHHHHH--HH
Q 005732 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPN-VAAWTALMNGY--SH 476 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~ 476 (680)
-+......+.... ......-+.++.+| .+..+.+.+.-..+.... ...+.+++... ++
T Consensus 293 ----------------l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 293 ----------------LAEFLLSKLSKKQ-KQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVR 353 (652)
T ss_pred ----------------hHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHH
Confidence 0000000000000 01111112233333 244455555555554321 22333333322 22
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------HHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFR--------SMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
...+..|.+++...-+....-........+......|+++.|.+++. .+.+.+..| .+...+...+.+.+
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIK 431 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhcc
Confidence 22466677777666654322123344445555667788888888777 444444333 34445566666666
Q ss_pred ChHHHHHHHHhC-----CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 549 HLHEAEEFIKDM-----PIELDAVVWGA----LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 549 ~~~~A~~~~~~~-----~~~p~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
+-+.|..++.+. ...+....... +...-.+.|+.++|..+++++++..|++......++.+|.+.. .+.|
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka 510 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKA 510 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHH
Confidence 666565555543 11122222222 2223345688888888888888888888777777777776653 3445
Q ss_pred HHHH
Q 005732 620 MDIR 623 (680)
Q Consensus 620 ~~~~ 623 (680)
..+-
T Consensus 511 ~~l~ 514 (652)
T KOG2376|consen 511 ESLS 514 (652)
T ss_pred HHHh
Confidence 5543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=82.37 Aligned_cols=50 Identities=30% Similarity=0.586 Sum_probs=47.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 005732 47 RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQ 96 (680)
Q Consensus 47 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~ 96 (680)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=103.82 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=200.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhc
Q 005732 367 NSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRC 446 (680)
Q Consensus 367 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (680)
+.+..+|.+.|.+.+|...|+...+. .|-+.||..+-.+|.+..+++.|..++.+-.+.- +.++.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999998874 5777899999999999999999999999988764 66666666778888899
Q ss_pred CChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005732 447 GSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFR 523 (680)
Q Consensus 447 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 523 (680)
++.++|.++++...+ .++....++...|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.++++.++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998875 45667777778889999999999999999999976 78889999999999999999999999
Q ss_pred HHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 524 SMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 524 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+....--.|+ ..+|-.+.......|++.-|.+.|+-. ...| +...++.|...-.+.|++++|..++..+....|+-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9985433333 567878888888999999999999976 3333 57889999988889999999999999999999986
Q ss_pred CchHHHH
Q 005732 600 ISAYVIL 606 (680)
Q Consensus 600 ~~~~~~l 606 (680)
.+...++
T Consensus 463 ~E~~~Nl 469 (478)
T KOG1129|consen 463 AEVTTNL 469 (478)
T ss_pred cccccce
Confidence 5544443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-07 Score=94.03 Aligned_cols=434 Identities=13% Similarity=0.071 Sum_probs=287.0
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 005732 183 VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEF 262 (680)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 262 (680)
.|..++..|- .++ +...++..+.+.+.. |....|.....-.+...|+.++|........... ..+...|..+.-.
T Consensus 10 lF~~~lk~yE-~kQ-YkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQ-YKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHH-HHH-HHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHH
Confidence 3444555443 356 788888888887743 2256666666666778899999988887777654 3466788888888
Q ss_pred hhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHH
Q 005732 263 YCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKR 336 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~ 336 (680)
+....++++|.+.|+... +++...+..+...-.+.++++.....-....+ | ....|..+..++.-.|+...|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999877 77777777777777788888888777777766 3 33467888888888999999999
Q ss_pred HHhhcCcCCcchhhhHhhhcccCCCChhHHHHH------HHHHHhCCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHhc
Q 005732 337 LFEKMPHRSIISLNTMISVIPEMERNPVTWNSM------ISGYVQNNLHEKALQLYMTMRKLAIDRTRST-FSVLFHACS 409 (680)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~ 409 (680)
+++...+.... .++...|.-. .......|..++|++.+..-... ..|... -..-...+.
T Consensus 165 il~ef~~t~~~------------~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~ 230 (700)
T KOG1156|consen 165 ILEEFEKTQNT------------SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHhhcc------------CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHH
Confidence 98887775421 3444444332 23456688888888887765432 122222 223345567
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHH-HHHhcCCC-------CCHHHHHHHHHHHHHcCChh
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQ-ASFSSISS-------PNVAAWTALMNGYSHHGLGS 481 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~ 481 (680)
+.++.++|..++..++... |.+...|-.+..++.+-.+.-++. .+|....+ |-....+.+. ...-.+
T Consensus 231 kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~ 305 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKE 305 (700)
T ss_pred HHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHH
Confidence 8899999999999999886 555555555666665433333343 66655543 1111111111 112223
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH----HHHHHHhcC----------CCCChhHH--HHHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMK----IFRSMKSYG----------VVPTLEHY--TCVVDLLG 545 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~----~~~~~~~~~----------~~~~~~~~--~~l~~~~~ 545 (680)
..-+++..+.+.|+.+-...+.++ |-.....+-..+ +...+...| -+|....| -.++..+-
T Consensus 306 ~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 445566777777766533333332 222111111111 111111111 14454444 35677788
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005732 546 RSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (680)
+.|+++.|..+++.. +..|+ +..|..-...+.+.|+.++|..+++++.+++-.+...-...+.-..++++.++|.++.
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 999999999999987 66776 4556667788899999999999999999999887555557888899999999999999
Q ss_pred HHHhhCCCc-----cCCceeEEEEC
Q 005732 624 KRLTHLEVK-----KDPGCSWIELN 643 (680)
Q Consensus 624 ~~~~~~~~~-----~~~~~~~~~~~ 643 (680)
.+..+.|.. .+--|.|.+++
T Consensus 463 skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 463 SKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHhhhcccchhhhHHHhhhHHHhHh
Confidence 999887742 12246666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-09 Score=105.77 Aligned_cols=230 Identities=18% Similarity=0.180 Sum_probs=166.0
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHhc-----C-CCchHh-HHHHHHHHHHhcCChHHHHHHHhcCCC----------
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAHLVKT-----P-FESNVY-VGTSLVDMYSRCGSINDAQASFSSISS---------- 461 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 461 (680)
.+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555677777777777777777766653 1 122222 233467778888888888888877652
Q ss_pred CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CC
Q 005732 462 PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-----DIV-PN-AATFVGVLSACVRAGLVNEGMKIFRSMKSY---GV 530 (680)
Q Consensus 462 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~~~-p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~ 530 (680)
|. ..+++.|..+|.+.|++++|...+++..+- |.. |. ..-++.+...|...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 346777778888999998888887776541 222 22 234566677788899999999998877621 12
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc--
Q 005732 531 VPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM---------PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFG-- 594 (680)
Q Consensus 531 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 594 (680)
.++ ..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++++|.++|.++..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467889999999999999999999876 1223 256678889999999999999999988755
Q ss_pred --CCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 595 --LDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 595 --~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..|+++ .+|..|+.+|.+.|++++|.++.+++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345554 4588999999999999999999988774
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-09 Score=92.78 Aligned_cols=163 Identities=15% Similarity=0.055 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
+...|.-.|.+.|++..|..-+++.++. .|+ ..++..+...|-+.|+.+.|.+.|++..+.. +-+-.+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3445667788888888888888888884 454 6677778888888888888888888888654 23567778888888
Q ss_pred HhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHH
Q 005732 545 GRSGHLHEAEEFIKDMPIEL----DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKM 620 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (680)
|..|++++|...|++.-..| -..+|..++.+..+.|+.+.|...|+++++++|+.+.....++..+...|++.+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88889999998888873333 36678888888888999999999999999999998888889999999999999999
Q ss_pred HHHHHHhhCCC
Q 005732 621 DIRKRLTHLEV 631 (680)
Q Consensus 621 ~~~~~~~~~~~ 631 (680)
-.+++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 98888876654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-09 Score=113.30 Aligned_cols=212 Identities=12% Similarity=0.007 Sum_probs=167.6
Q ss_pred CChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh---------cCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCC
Q 005732 412 GSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR---------CGSINDAQASFSSISS---PNVAAWTALMNGYSHHGL 479 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 479 (680)
++.++|...+++..+.. +.+...+..+..++.. .+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999999876 5556666666665542 2447899999988774 467788888889999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005732 480 GSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIK 558 (680)
Q Consensus 480 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (680)
+++|+..|+++.+. .|+ ...+..+...+...|++++|...+++..+..+.+ ...+..++..+...|++++|.+.++
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999994 465 6677888889999999999999999999765442 2233334455677899999999998
Q ss_pred hC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 559 DM--PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 559 ~~--~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+. ...| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 87 2245 45557778888889999999999999998888888777888888888888 4888888887764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-06 Score=86.80 Aligned_cols=358 Identities=11% Similarity=0.031 Sum_probs=224.6
Q ss_pred hhhHhhhhcc-cCccchhhHHHH--HhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhC-C-
Q 005732 5 ATQSQTLMTQ-ETLIVSTNKAIT--ECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRS-N- 79 (680)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~- 79 (680)
++.++.+.+. .=|..+-..++. .|.-.|+.+.|.+-.+-++ +-..|..|.+.|.++++.+-|.-.+-.|... |
T Consensus 712 ~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 712 AKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred hhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 3455555544 345556666665 5777899999888766554 4457999999999999999998888777532 1
Q ss_pred -------CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC-chh
Q 005732 80 -------VKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHED-NEL 151 (680)
Q Consensus 80 -------~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 151 (680)
-.|+ .+=.-+.-.....|.+++|+.+|+.-.+.. .|=..|-..|.|++|.++-+.-..- -..
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~ 859 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRN 859 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhh
Confidence 1121 222222222346789999999999877653 3445777889999999988754332 234
Q ss_pred HHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhcc
Q 005732 152 LWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARL 231 (680)
Q Consensus 152 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 231 (680)
+|-.....+-..++++.|++.|++...+--..+..|.. + +.....+.+++. |...|.--...+-..
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e------~-p~~~e~Yv~~~~-------d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE------Y-PKQIEQYVRRKR-------DESLYSWWGQYLESV 925 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh------C-hHHHHHHHHhcc-------chHHHHHHHHHHhcc
Confidence 67777788888899999999998766543333322221 1 233333333332 556677777777788
Q ss_pred CChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhc
Q 005732 232 GAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLT 311 (680)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (680)
|+.+.|+.++..... |-++++..|-.|+.++|-.+-++- .+......+.+-|-..|++.+|..+|.+..
T Consensus 926 GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999988877643 456777888889999888887764 344455677888888899999988887765
Q ss_pred cCChhHHHHHHHHHhccC---------------ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhC
Q 005732 312 EANSISYNSMIKGYAVYG---------------QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQN 376 (680)
Q Consensus 312 ~~~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~ 376 (680)
. +...|+.|-..+ +.-.|.+.|++.-. -+...+-.|-+.
T Consensus 995 a-----fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~---------------------~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 995 A-----FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG---------------------YAHKAVMLYHKA 1048 (1416)
T ss_pred H-----HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch---------------------hhhHHHHHHHhh
Confidence 3 333333332222 22333344443211 112223346777
Q ss_pred CChHHHHHHHH--------HHHHCCC--CCChhhHHHHHHHhcccCChHHHHHHHHHHH
Q 005732 377 NLHEKALQLYM--------TMRKLAI--DRTRSTFSVLFHACSCLGSLQQGQLLHAHLV 425 (680)
Q Consensus 377 ~~~~~A~~~~~--------~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 425 (680)
|.+.+|+++-= +++..++ ..|+...+....-++...++++|..++-..+
T Consensus 1049 Gm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1049 GMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred cchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77777776421 1222222 2345556666666667777777766665443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-08 Score=98.53 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=43.4
Q ss_pred HHhcC-CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 576 CWFWM-NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 576 ~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
+.... =.++|..+++-+.+..|++..+|..-..+|.+.|++--|++.+++
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33444 478999999999999999999999999999999999999887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-07 Score=86.67 Aligned_cols=294 Identities=12% Similarity=0.015 Sum_probs=185.0
Q ss_pred CcchHHHHHHHHhc--cCChhhHHHHHHHHHHh-CCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHH
Q 005732 217 NEYTFDSVIRACAR--LGAFCEGKVVHGLLIKC-GFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSL 290 (680)
Q Consensus 217 ~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 290 (680)
+..+...-+.+++. .++...+...+-.+... -++-++.....+.+.+...|+.++|...|++.. +..+......
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Y 272 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLY 272 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHH
Confidence 44455555555443 23333333333333222 245567778888888888888888888888876 3333333444
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCC---hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTEAN---SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWN 367 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 367 (680)
...+.+.|+.+....+...+...+ ...|-.-+......++++.|..+-++..+.+ +.+...|-
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--------------~r~~~ali 338 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--------------PRNHEALI 338 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--------------cccchHHH
Confidence 555667788877777777666533 2234444444556777888888888777766 56666776
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHH-HHHH-
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLV-DMYS- 444 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~- 444 (680)
.-...+...|++++|.-.|+..+. +.| +...|.-++.+|...|++.+|...-+...+.- +.+..+...+. ..+.
T Consensus 339 lKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 339 LKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFP 415 (564)
T ss_pred hccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeecc
Confidence 666777788888888888887765 333 45678888888888888888776666555431 33333333331 1111
Q ss_pred hcCChHHHHHHHhcCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005732 445 RCGSINDAQASFSSISS--PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
...--++|.++++...+ |+ ....+.+...+...|+.++++.++++... ..||....+.|...+...+.+.+|.+.
T Consensus 416 dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 12234667777766654 33 23455566667777777777777777766 567777777777777777777777777
Q ss_pred HHHHHhcC
Q 005732 522 FRSMKSYG 529 (680)
Q Consensus 522 ~~~~~~~~ 529 (680)
|....+.+
T Consensus 494 y~~ALr~d 501 (564)
T KOG1174|consen 494 YYKALRQD 501 (564)
T ss_pred HHHHHhcC
Confidence 77776543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.2e-09 Score=97.36 Aligned_cols=199 Identities=13% Similarity=0.082 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMY 443 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (680)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345555555666666666666666555432 1123334444444444455555555544444432 2
Q ss_pred HhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 005732 444 SRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIF 522 (680)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 522 (680)
.+...+..+...+...|++++|.+.+++.......| ....+..+...+...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233344455555556666666666666665432112 2334445555666666777777766
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 005732 523 RSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLD 596 (680)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 596 (680)
++...... .+...+..+...+...|++++|.+.+++. .. +.++..+..+...+...|+.++|..+.+.+.+..
T Consensus 159 ~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66664332 23445556666666777777777666665 21 2344555555566666777777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-07 Score=92.61 Aligned_cols=448 Identities=11% Similarity=0.056 Sum_probs=253.2
Q ss_pred HHHHHhhcCCChhHHHHhhccCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH--hcc
Q 005732 23 KAITECGRNGQLVTARNLFDQMPI---RTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC--AQL 97 (680)
Q Consensus 23 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~--~~~ 97 (680)
+=++.+..+|++++|.+...++.. .+..++.+=+-++.+.++|++|+.+.+.-... .-+. .|. +=++| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~-~~~-fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVIN-SFF-FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcc-hhh-HHHHHHHHHc
Confidence 445677788999999999888752 36677777788899999999999665543321 1111 111 23444 478
Q ss_pred CChHHHHHHHHHHHHhCCCCc-chhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccC
Q 005732 98 NSLIDGKQIHCLVLKSGYECF-EFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKM 176 (680)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 176 (680)
+..+.|...++ |..++ ..+...-.+.+.+.|++++|..+++.+.+.+...+..-+.+-+-+--......+.+..
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 89999988887 43333 4466777888999999999999999998776666655555433322222222245555
Q ss_pred CCCCeeeHHHHHH---HHHhCCCChHHHHHHHHHHHHcCCCC-----CCcch--------HHHHHHHHhccCChhhHHHH
Q 005732 177 PKKDVVVWTKLIS---GYAKSVDGCEKALKLFRWMRESGENM-----PNEYT--------FDSVIRACARLGAFCEGKVV 240 (680)
Q Consensus 177 ~~~~~~~~~~ll~---~~~~~~~~~~~a~~~~~~m~~~~~~~-----p~~~~--------~~~ll~~~~~~~~~~~a~~~ 240 (680)
+.....+|..+.. .+...|+ +.+|+++++.....+... .+..- -.-+.-.+-..|+.++|..+
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 5444445555443 4456788 999999999883211100 01111 11234445678999999999
Q ss_pred HHHHHHhCCCCCchHH----HHHHHHhhcCCCHH-HHHHHHhhcC-CCc------------cchhhHHHHHHHhcCCHHH
Q 005732 241 HGLLIKCGFEFDESIG----GALIEFYCGCEAFD-GAMRVYDRLE-NPC------------LNASNSLINGLISMGRIED 302 (680)
Q Consensus 241 ~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~-~A~~~~~~~~-~~~------------~~~~~~l~~~~~~~g~~~~ 302 (680)
+...++.. ++|.... |.|+.+-....=++ .++..++... ... ...+..........+..+.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999886 4444322 22332211111111 2333333332 000 0001111111122334444
Q ss_pred HHHHHHHhcc-CChhHHHHHHHHHh--ccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCCh
Q 005732 303 AELIFNRLTE-ANSISYNSMIKGYA--VYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLH 379 (680)
Q Consensus 303 a~~~~~~~~~-~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~ 379 (680)
+.++...... .....+..++..+. +......+..++...-+... .......-.+++.....|++
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p-------------~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHP-------------EKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC-------------chhHHHHHHHHHHHHhcCCH
Confidence 4444444443 11233444444332 23346777777777766541 22355666778888899999
Q ss_pred HHHHHHHHHH--------HHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHH
Q 005732 380 EKALQLYMTM--------RKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIND 451 (680)
Q Consensus 380 ~~A~~~~~~m--------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (680)
+.|++++... .+.+.. +.+...+...+.+.++.+.|..++...++
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~------------------------- 445 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIK------------------------- 445 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHH-------------------------
Confidence 9999998833 332222 22333334444444444444444333322
Q ss_pred HHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 452 AQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 452 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.+..-.. .-...+..+...-.+.|+-++|..+++++.+.. .+|..+...++.+|++. +++.|..+-+.+.
T Consensus 446 ---~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 446 ---WWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred ---HHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 1111110 011223334444466788888999998888853 45677888888888775 6777777766654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.7e-11 Score=78.49 Aligned_cols=50 Identities=28% Similarity=0.531 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR 511 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 511 (680)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888889999999999999999999999988899999999988888864
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-09 Score=102.95 Aligned_cols=230 Identities=10% Similarity=-0.102 Sum_probs=124.9
Q ss_pred HhCCChHHHHHHHHHHHHCC-CCCC--hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChH
Q 005732 374 VQNNLHEKALQLYMTMRKLA-IDRT--RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIN 450 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (680)
...+..+.++..+.++.... ..|+ ...|......+...|+.+.|...|.+..+.. +.++..|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33455566677776666432 1222 2345555566667777777777777777665 555666777777777777777
Q ss_pred HHHHHHhcCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 005732 451 DAQASFSSISS--P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 451 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 527 (680)
.|.+.|+...+ | +...|..+..++...|++++|++.|++..+. .|+..........+...+++++|...+.+...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777766643 2 3456666666667777777777777777663 34432111112223345567777777755442
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-C
Q 005732 528 YGVVPTLEHYTCVVDLLGRSGHLHEA--EEFIKDM-PI----EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDK-K 598 (680)
Q Consensus 528 ~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~ 598 (680)
.. .++...+ . ......|+..++ .+.+.+. .. .| ....|..++..+...|++++|+..|+++++.+| +
T Consensus 194 ~~-~~~~~~~-~--~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 KL-DKEQWGW-N--IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred hC-CccccHH-H--HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 21 2222111 1 222223443332 2222211 11 11 234566666666677777777777777777665 3
Q ss_pred CCchHHHHHHHH
Q 005732 599 PISAYVILSNIY 610 (680)
Q Consensus 599 ~~~~~~~l~~~~ 610 (680)
..+....++...
T Consensus 270 ~~e~~~~~~e~~ 281 (296)
T PRK11189 270 FVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-07 Score=91.92 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=60.4
Q ss_pred HHhcCChhhHHHHhccCC---CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhh
Q 005732 160 YVQCNLMSDAFDVFIKMP---KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCE 236 (680)
Q Consensus 160 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 236 (680)
.+..|+++.|+..|.+.. ++|.+.|..-..++...++ +++|++=-.+-++.. |.-+..|+....++.-.|++++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHH
Confidence 344455555555554332 3455666666677777777 677766655555543 3245667777777777777777
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 237 GKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
|...|..-++.. +.+...++.|..++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 777777766653 33445555555555
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-06 Score=87.66 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=107.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHH
Q 005732 223 SVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIED 302 (680)
Q Consensus 223 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (680)
..+.+....+.|.+|..+++.++... .....|..+.+-|...|+++.|.++|-+.. .++..|..|.+.|+|++
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHH
Confidence 34555566666777777776666553 223445556666667777777777765432 23555666677777777
Q ss_pred HHHHHHHhccCC--hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChH
Q 005732 303 AELIFNRLTEAN--SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHE 380 (680)
Q Consensus 303 a~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~ 380 (680)
|.++-.+...|. +..|-.-..-+-..|++.+|++++-.+... +. .|..|-+.|..+
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p-----------------~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP-----------------DK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCc-----------------hH-----HHHHHHhhCcch
Confidence 776666665543 234444444555666777776666555432 21 345566666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhc
Q 005732 381 KALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSS 458 (680)
Q Consensus 381 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (680)
..+++..+-.... -..|-..+..-+...|+...|+..|-+.. -|.+-+++|..++-+++|.++-+.
T Consensus 868 dmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 868 DMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 6666555432111 12234444555555666666655544332 133445555555556666555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-07 Score=96.90 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=153.5
Q ss_pred HHhcCCHHHHHHHHHHhcc--CChh-HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHH
Q 005732 294 LISMGRIEDAELIFNRLTE--ANSI-SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMI 370 (680)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li 370 (680)
+...|++++|++.++.-.. .|.. ........+.+.|+.++|..++..+.+.+ |.|..-|..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--------------Pdn~~Yy~~L~ 79 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--------------PDNYDYYRGLE 79 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------CCcHHHHHHHH
Confidence 3444555555555544433 3322 33344555556666666666666666555 34444444444
Q ss_pred HHHHhC-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCCh-HHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 371 SGYVQN-----NLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSL-QQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 371 ~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
.+..-. ...+...++|+++...- |.......+.-.+.....+ ..+..++......|+|+ +|+.|-..|.
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~ 154 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYK 154 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHc
Confidence 443111 23455555666554422 3333333332222222222 23344445555555433 2333444444
Q ss_pred hcCChHHHHHHHhcCC------------------CCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHH
Q 005732 445 RCGSINDAQASFSSIS------------------SPNVAAW--TALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFV 503 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~------------------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 503 (680)
...+..-..+++.... .|....| ..+...|-..|++++|++++++.+++ .|+ ...|.
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~ 232 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYM 232 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 3333333333332211 1333333 45566777888888888888888884 455 56677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--------HHHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP---IELD--------AVVWGAL 572 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--------~~~~~~l 572 (680)
.-...+-+.|++.+|.+.++.....+. -|..+-+..+..+.++|++++|.+++.... ..|. .......
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 777788888888888888888886553 366666677777888888888888877662 1221 1112344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
+.+|.+.|++..|+..|..+.+.
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 56677888888888777666553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=96.93 Aligned_cols=227 Identities=11% Similarity=0.000 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCC-chHhHHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFE-SNVYVGTSLVD 441 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 441 (680)
......+.+++...|+++.++ .++.... .|.......+...+...++.+.+..-++........ .+.........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344555677788888776544 3332222 555555555555554444444444444333322222 23333333334
Q ss_pred HHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005732 442 MYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++
T Consensus 111 i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~aw------------ 173 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAW------------ 173 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHH------------
T ss_pred HHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHH------------
Confidence 455566677666666554 34455555566666666666666666666652 223 2233333333
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 522 FRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+..+.-.+.+.+|..+|+++ ...+++.+.+.++.+....|++++|+..++++++.+|++
T Consensus 174 -------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 174 -------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp -------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred -------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 22222233566666666665 234566666777777777777777777777777777777
Q ss_pred CchHHHHHHHHHhcCCc-hHHHHHHHHHhhC
Q 005732 600 ISAYVILSNIYAVLGKW-GKKMDIRKRLTHL 629 (680)
Q Consensus 600 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 629 (680)
+.+..+++.+....|+. +.+.+++.+++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777777776 4566666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-05 Score=83.06 Aligned_cols=557 Identities=13% Similarity=0.092 Sum_probs=274.9
Q ss_pred hcccCccchhhHHHHHhhcCCChhHHHHhhccCCC-------------------C-----ChhhHHHHHHHHHcCCChhH
Q 005732 12 MTQETLIVSTNKAITECGRNGQLVTARNLFDQMPI-------------------R-----TVVSWNTMLCGYSKWAKFDE 67 (680)
Q Consensus 12 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~-----~~~~~~~ll~~~~~~~~~~~ 67 (680)
.....|+.+.-.-|++-++-|++.+++++.++-.- | |.+-+-.=+-.|.-.++..+
T Consensus 718 vn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~k 797 (1666)
T KOG0985|consen 718 VNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQK 797 (1666)
T ss_pred hccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHH
Confidence 44566777777899999999999999998876520 1 11111111222222333333
Q ss_pred HHHHHHHHHhCC-----------CCCCHhhHH-------------HHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhh
Q 005732 68 SLSLVSTMHRSN-----------VKLNETTFS-------------TILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGS 123 (680)
Q Consensus 68 a~~~~~~m~~~~-----------~~~~~~t~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (680)
-+++|-+=..-+ +.=+....- -+..-+-+.+++......++..+..|.+ |+.+++
T Consensus 798 yIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hn 876 (1666)
T KOG0985|consen 798 YIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHN 876 (1666)
T ss_pred HHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHh
Confidence 333332211110 000111111 1222233345555556666777777754 788899
Q ss_pred hHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCC--------CCeeeHHHHHHHHHhCC
Q 005732 124 GLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPK--------KDVVVWTKLISGYAKSV 195 (680)
Q Consensus 124 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~~ 195 (680)
+|...|...++-.+- +.+.|+.-=+..+.-||..++.-.|.-.+++-.- .....|....+.+.+..
T Consensus 877 AlaKIyIDSNNnPE~------fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~ 950 (1666)
T KOG0985|consen 877 ALAKIYIDSNNNPER------FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERS 950 (1666)
T ss_pred hhhheeecCCCChHH------hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhcc
Confidence 999998887665432 1222222223334445555555444433333210 01112333333333322
Q ss_pred CC--h--------HHHHHHHHHHHHcCCC-CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC--CCCCchHHHHHHHH
Q 005732 196 DG--C--------EKALKLFRWMRESGEN-MPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG--FEFDESIGGALIEF 262 (680)
Q Consensus 196 ~~--~--------~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~ 262 (680)
+. | .--.++.++..+.+++ ..|+...+..++++...+-..+-.++++.+.-.+ +..+....+.|+-.
T Consensus 951 D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt 1030 (1666)
T KOG0985|consen 951 DPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT 1030 (1666)
T ss_pred ChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH
Confidence 20 1 1112344444443332 1256667777777777777777777777765432 12222333444433
Q ss_pred hhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcC
Q 005732 263 YCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMP 342 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 342 (680)
..+ -+.....++.+++..-+. ..+.......+-+++|..+|++..- +..+.+.|+. .-+..+.|.+.-++..
T Consensus 1031 Aik-ad~trVm~YI~rLdnyDa---~~ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n 1102 (1666)
T KOG0985|consen 1031 AIK-ADRTRVMEYINRLDNYDA---PDIAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCN 1102 (1666)
T ss_pred Hhh-cChHHHHHHHHHhccCCc---hhHHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhC
Confidence 333 344555555555541111 1233445555566666666655432 1112222221 1233333433333322
Q ss_pred cCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 343 HRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
.+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++.
T Consensus 1103 -------------------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1103 -------------------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred -------------------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1234555555555555555555444222 233445555555555555555555555
Q ss_pred HHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-----------------------CCCHHHHHHHHHHHHHcCC
Q 005732 423 HLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS-----------------------SPNVAAWTALMNGYSHHGL 479 (680)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~ 479 (680)
..++..-+|... ..|+-+|++.+++.+.++++..-. -.++..|..|...+...|+
T Consensus 1158 MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1158 MARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444443333322 344445555555444443331100 0234556666667777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005732 480 GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKD 559 (680)
Q Consensus 480 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (680)
+..|...-++. .+..||..+-.+|...+.+.-|. |-..++.....-...++..|...|-+++-+.+++.
T Consensus 1236 yQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1236 YQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 77666543322 25677887777887766554432 33334444556677888999999999999999887
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--C------CCCchHHHHHHHHHhcCCchHHHHH
Q 005732 560 M-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLD--K------KPISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 560 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p------~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
. +... .-..|..|...|.+- ..++..+.++-....- | +....|..++.+|.+-..|+.|.-.
T Consensus 1305 ~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 5 4332 233445555444433 2333333333222211 1 1234577777777777777766544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-08 Score=95.81 Aligned_cols=213 Identities=13% Similarity=0.070 Sum_probs=155.9
Q ss_pred CChHHHHHHHHHHHhcC-CC--chHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHH
Q 005732 412 GSLQQGQLLHAHLVKTP-FE--SNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVL 485 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 485 (680)
+..+.+..-+.+++... .. .....|..+...|...|+.+.|...|++..+ .+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777777777542 12 2245677888889999999999999988764 467899999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 005732 486 LFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PI 562 (680)
Q Consensus 486 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 562 (680)
.|++..+ +.|+ ...+..+..++...|++++|.+.+++..+..+ +......+...+...++.++|.+.+++. ..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998 5565 67788888889999999999999999997543 3222222223345678899999999765 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------cCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMF-------GLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
.|+...+ .......|+...+ ..++.+. ++.|+.+.+|..++.++...|++++|...+++..+.++.
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3332222 2223345555443 2333333 445666789999999999999999999999999887653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-08 Score=86.96 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=122.2
Q ss_pred HHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChh
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGS 481 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 481 (680)
+..+...|+...|+.....+++.. +.+...+..-..+|...|++..|+.-++... ..++..+-.+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 444556788888888888888775 6777788888888888899888887666544 466777777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHH-H---HHH---------HHHHhccCCHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAAT-F---VGV---------LSACVRAGLVNEGMKIFRSMKSYGVVPTLE---HYTCVVDLLG 545 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~-~---~~l---------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 545 (680)
.++...++..+ +.||... | ..| +......++|.++.+-.+.+.+..+..... .+..+-.++.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 88888888887 5677432 1 111 111223455555555555555433321222 2233344455
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 546 RSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
..|++.+|++...+. .+.|+ +.++..-..+|.....++.|++-|+++.+.++++.
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 566666666666554 44443 55555555666666666666666666666666653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-09 Score=102.29 Aligned_cols=246 Identities=14% Similarity=0.108 Sum_probs=175.1
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHH
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLL 486 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 486 (680)
+.|++.+|.-.|+..++.. |.+...|..|.......++-..|+..+++..+ .+......|.-.|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455666666666666655 66677777777777777777777777776654 4556666777778888888888888
Q ss_pred HHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005732 487 FEIMLEQDIV--------PNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVVDLLGRSGHLHEAEEFI 557 (680)
Q Consensus 487 ~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (680)
++.-+....+ ++...-.. ..+..........++|-++. ..+..+|+.+...|.-.|.-.|++++|++.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 8776553210 00000000 12222233444555665555 5565688999999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCC
Q 005732 558 KDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDP 635 (680)
Q Consensus 558 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 635 (680)
+.+ .++| |...|+-|+..++...+.++|+..|++++++.|.-..+.+.|+..|...|.|.||.+.|-.......+...
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 987 5666 68889999999999999999999999999999999999999999999999999999999887765432211
Q ss_pred ceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 636 GCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
+ .+..++ ++.|.+.||..-.-++
T Consensus 534 ~---------------~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 534 H---------------NKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred c---------------ccCCcc-hHHHHHHHHHHHHHcC
Confidence 1 111122 6778888886554443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-07 Score=92.38 Aligned_cols=304 Identities=13% Similarity=0.035 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCC
Q 005732 301 EDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNN 377 (680)
Q Consensus 301 ~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~ 377 (680)
..|...+.+... .+..+|+.|.-. ...|.+.-+...|-+..... +.+..+|..+.-.+.+..
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--------------p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--------------PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--------------ccchhheeccceeEEecc
Confidence 355666666555 556666666555 66677777777776666554 667778888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHH--Hh--cCCCchHhHHHHHHHHHHhcCChHHH
Q 005732 378 LHEKALQLYMTMRKLAIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHL--VK--TPFESNVYVGTSLVDMYSRCGSINDA 452 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~g~~~~A 452 (680)
+++-|...|...+.. .| +...+..........|+.-+...+|..- .. .|--++..-+-+........|+.++-
T Consensus 865 d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 899998888887663 34 3444444444444566666666666652 21 23344444444445555666776666
Q ss_pred HHHHhcCCC-------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHH----HHHHHhccCC
Q 005732 453 QASFSSISS-------------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-DIVPNAATFVG----VLSACVRAGL 514 (680)
Q Consensus 453 ~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~----ll~~~~~~g~ 514 (680)
+...+.+.. .+...|.+.....-..+.++.|.++..+.+.. ..+-+..+|+. +.+.++..|.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 655555542 23456666666566666666666666554321 11223344442 2233445566
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 515 VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IELD-AVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
++.|..-+..... ..+..+-..- -+..-.++++++.+.|+++ . ...+ +.....++.+....+.-+.|...+
T Consensus 1023 fe~A~~a~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1023 FESAKKASWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred hhhHhhhhcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 6655443332210 0111111111 1123467788888888876 1 2223 334455555566677778888888
Q ss_pred HHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 590 QKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
-+...+.|.+......+.-++.-..+-.......++
T Consensus 1099 fe~~~ls~~~~~sll~L~A~~ild~da~~ssailee 1134 (1238)
T KOG1127|consen 1099 FEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEE 1134 (1238)
T ss_pred HHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHH
Confidence 777777777666666655555444333333333333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-07 Score=94.05 Aligned_cols=393 Identities=13% Similarity=0.047 Sum_probs=214.4
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--C---CccchhhHHH
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE--N---PCLNASNSLI 291 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~---~~~~~~~~l~ 291 (680)
|+..|..+.-+....|+++.+-+.|++.....+ .....|..+...|..+|.-..|..+++... . ++++.+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 666677777777777777777777777655432 244566777777777777777777777655 2 2222222222
Q ss_pred HHHH-hcCCHHHHHHHHHHhcc--------CChhHHHHHHHHHhcc-----------CChhhHHHHHhhcCcCCcchhhh
Q 005732 292 NGLI-SMGRIEDAELIFNRLTE--------ANSISYNSMIKGYAVY-----------GQVDDSKRLFEKMPHRSIISLNT 351 (680)
Q Consensus 292 ~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 351 (680)
..|. +.+..++++.+-.+... ..+..|..+.-+|... ....++.+.+++..+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d------ 474 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD------ 474 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC------
Confidence 2232 23555555555444433 3344555555444421 12344556666665555
Q ss_pred HhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCc
Q 005732 352 MISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFES 431 (680)
Q Consensus 352 l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 431 (680)
+.|+....-+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+...+.- +.
T Consensus 475 --------~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~ 545 (799)
T KOG4162|consen 475 --------PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GD 545 (799)
T ss_pred --------CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hh
Confidence 222222222333355566677777777777766555566666666666667777777777766555431 11
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP--NAATFVGVLSAC 509 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~ 509 (680)
|......-+..-...++.+++......+.. .|... ...-+.++-...+++...+.-.--.| ...++..+..-.
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 111111112222224444444433222110 00000 00011111122222222222110011 123333332222
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCC--------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPT--------LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW 579 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 579 (680)
...+ ..+..-.. +......|. ...|......+.+.++.++|...+.+. ++.| .+..|...+..+...
T Consensus 621 a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 621 ASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred Hhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH
Confidence 1111 00000000 111112222 234556667788899999999888777 4444 677788888888889
Q ss_pred CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH--HHHHHhhCCCcc
Q 005732 580 MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD--IRKRLTHLEVKK 633 (680)
Q Consensus 580 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~ 633 (680)
|+.++|.+.|..++.++|+++.....++.++.+.|+..-|.. ++..+.+.++..
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999998887777 888887765433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-06 Score=88.11 Aligned_cols=562 Identities=9% Similarity=-0.021 Sum_probs=325.0
Q ss_pred hhHHHHhhccCCCCC---hhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHH
Q 005732 34 LVTARNLFDQMPIRT---VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLV 110 (680)
Q Consensus 34 ~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 110 (680)
...|...|-+..+.| ...|..|...|+...+...|...|....+.. .-+......+...+++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 445555444333222 3467778888877778888888888887652 224455667777888888888888874333
Q ss_pred HHhC-CCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCC---chhHHHHHHHHHHhcCChhhHHHHhccCCCCCeee-HH
Q 005732 111 LKSG-YECFEFVGSGLLFFYANCFEIEEAKRVFDELHED---NELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVV-WT 185 (680)
Q Consensus 111 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 185 (680)
.+.. ...-...|..+.-.|...++...|..-|+..... |...|..+..+|.++|++..|+++|.+...-++.. |.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 2221 1111122333445677778888888888877653 45668888889999999999999998766433322 22
Q ss_pred HH--HHHHHhCCCChHHHHHHHHHHHHcC-----CCCCCcchHHHHHHHHhccCChhhHHHHHHHHH-------HhCCCC
Q 005732 186 KL--ISGYAKSVDGCEKALKLFRWMRESG-----ENMPNEYTFDSVIRACARLGAFCEGKVVHGLLI-------KCGFEF 251 (680)
Q Consensus 186 ~l--l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~ 251 (680)
.. ....+..|. +.++++.+....... ...--..++..+...+...|-...+..+++.-+ .+....
T Consensus 633 ~fk~A~~ecd~Gk-Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 633 RFKEAVMECDNGK-YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 11 112234566 788888887775421 000022334444444444443334443333322 222122
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHH----hcCCH---H---HHHHHHHHhcc--CChhHHH
Q 005732 252 DESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLI----SMGRI---E---DAELIFNRLTE--ANSISYN 319 (680)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~----~~g~~---~---~a~~~~~~~~~--~~~~~~~ 319 (680)
+...|-.+ ..|..+|-... |+.+. ..++.++. ..+.. + -+.+.+-.-.. .+..+|.
T Consensus 712 ~~~~Wi~a----------sdac~~f~q~e-~~~vn-~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy 779 (1238)
T KOG1127|consen 712 DRLQWIVA----------SDACYIFSQEE-PSIVN-MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY 779 (1238)
T ss_pred hHHHHHHH----------hHHHHHHHHhc-ccchH-HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence 22222222 22333333333 22211 11222222 12221 1 00011100011 3345566
Q ss_pred HHHHHHhc-------cC-ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 320 SMIKGYAV-------YG-QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 320 ~ll~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
.++..|.+ .+ +...|+..+.+..+.. ..+..+|+.|.-. ...|.+.-|...|-+-..
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--------------ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--------------ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--------------hccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 55554433 22 2346778888777765 5677788877655 555777777777766554
Q ss_pred CCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-----C---CC
Q 005732 392 LAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS-----S---PN 463 (680)
Q Consensus 392 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~ 463 (680)
.. +....+|..+.-.+....+++.|...|....... |.+...+-.........|+.-++..+|..-. + ++
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 32 3456678888888889999999999999988776 5666666555555566788888888876521 1 44
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHH----------HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCC
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEI----------MLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVP 532 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~----------m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~ 532 (680)
..-|-.-..-...+|+.++-+..-+. ... +..-+...|........+.+.+..|.+...++. -...+.
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~ 1001 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKL 1001 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433445566666554443333 332 222246777777777778888888887777654 111223
Q ss_pred ChhHHH----HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc---hHHH
Q 005732 533 TLEHYT----CVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS---AYVI 605 (680)
Q Consensus 533 ~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~ 605 (680)
+...|+ .+...++..|+++.|..-+.......+..+...-+.. .-.++++++.+.|++++.+-.++.. ....
T Consensus 1002 d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1002 DESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 444444 3445667788999888777665433343333222222 4578999999999999998766544 3445
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 005732 606 LSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
++.....++..+.|...+-+...
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHH
Confidence 56666778888889888777665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-07 Score=82.31 Aligned_cols=167 Identities=13% Similarity=0.038 Sum_probs=82.5
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLS 507 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~ 507 (680)
+..++..+...|.+.|+.+.|.+.|+...+ .+....|....-+|..|++++|...|++......-|. ..||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 333344444444444444444444443332 2233444444444555555555555555554322222 345555555
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a 585 (680)
+..+.|+.+.|.+.|++..+.... .+.....+.....+.|++..|..+++.. ...++..++...+..-...||.+.+
T Consensus 148 Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 555555555555555555543211 2233344455555556666665555554 2234555554455555556666666
Q ss_pred HHHHHHHHcCCCCC
Q 005732 586 ERAAQKMFGLDKKP 599 (680)
Q Consensus 586 ~~~~~~~~~~~p~~ 599 (680)
-++=.++.+..|.+
T Consensus 227 ~~Y~~qL~r~fP~s 240 (250)
T COG3063 227 QRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHhCCCc
Confidence 66666666666665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-06 Score=87.26 Aligned_cols=316 Identities=15% Similarity=0.126 Sum_probs=175.3
Q ss_pred cchhhhhHHH--HHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCC-----------CCe-ee
Q 005732 118 FEFVGSGLLF--FYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPK-----------KDV-VV 183 (680)
Q Consensus 118 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~ 183 (680)
|..+--++++ .|...|+.+.|.+-.+-+. ....|..+.+.+++.+++|-|.-.+..|.. .+. .+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4455555543 5677788888877776663 345677788888888777777766665531 111 11
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
-.-.......-|- +++|..+|.+-+.. ..+=+.|-..|.|++|.++-+.=-+ ..=..||.....-+
T Consensus 803 eakvAvLAieLgM-lEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DR---iHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 803 EAKVAVLAIELGM-LEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDR---IHLRNTYYNYAKYL 868 (1416)
T ss_pred hhHHHHHHHHHhh-HHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccc---eehhhhHHHHHHHH
Confidence 1111122233355 67777777776542 2333455667777777766543211 11123555555555
Q ss_pred hcCCCHHHHHHHHhhcCC-----------------------CccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHH
Q 005732 264 CGCEAFDGAMRVYDRLEN-----------------------PCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNS 320 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (680)
-..+|.+.|++.|++... .+...|.-...-+-..|+.+.|+.+|.... -|-+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs 943 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFS 943 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhh
Confidence 666777777777765541 111222222222334456666666655443 3555
Q ss_pred HHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh
Q 005732 321 MIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRST 400 (680)
Q Consensus 321 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 400 (680)
+++..|-.|+.++|.++-++ ..|..+...+...|-..|+..+|...|.+.+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e-------------------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------- 995 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE-------------------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA--------- 995 (1416)
T ss_pred heeeEeeccCchHHHHHHHh-------------------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------
Confidence 56666666777777666554 34555666788889999999999999887753
Q ss_pred HHHHHHHhcccC---------------ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-----
Q 005732 401 FSVLFHACSCLG---------------SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS----- 460 (680)
Q Consensus 401 ~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 460 (680)
|...|+.|-..+ +.-.|..+|++. |. -....+..|-+.|.+.+|.++-=+-.
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 333333332222 222233333332 11 11223445777777777766532211
Q ss_pred ---------CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005732 461 ---------SPNVAAWTALMNGYSHHGLGSEAVLLFEIM 490 (680)
Q Consensus 461 ---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 490 (680)
..|+...+.....++.+.++++|..++-..
T Consensus 1068 ~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1068 DLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 145556666666666667777776665443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.4e-08 Score=97.20 Aligned_cols=233 Identities=15% Similarity=0.133 Sum_probs=176.6
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCChhh-HHHHHHHhcccCChHHHHHHHHHHHhc-----C-
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKL-----A-IDRTRST-FSVLFHACSCLGSLQQGQLLHAHLVKT-----P- 428 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~- 428 (680)
-..+...+...|...|++++|..+++...+. | ..|...+ ...+...|...+++++|..+|+.+... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445566889999999999999999988664 2 1344333 344777888999999999999988752 2
Q ss_pred -CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHC---
Q 005732 429 -FESNVYVGTSLVDMYSRCGSINDAQASFSSISS----------PNV-AAWTALMNGYSHHGLGSEAVLLFEIMLEQ--- 493 (680)
Q Consensus 429 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--- 493 (680)
.+.-..+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..++++..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122345677788899999999999888776542 233 24566777888999999999999877642
Q ss_pred CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCC---CChhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005732 494 DIVPN----AATFVGVLSACVRAGLVNEGMKIFRSMKSY----GVV---PTLEHYTCVVDLLGRSGHLHEAEEFIKDM-- 560 (680)
Q Consensus 494 ~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 560 (680)
-+.++ ..+++.|...|...|++++|.++++++... +.. -....++.|...|.+.+++.+|.++|.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 467899999999999999999999988722 111 12456788899999999999999998875
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 561 ------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 561 ------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+..|+ ..+|..|...|...|+++.|+++.+++..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 13343 56789999999999999999999988764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-06 Score=82.81 Aligned_cols=177 Identities=13% Similarity=0.018 Sum_probs=115.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCH
Q 005732 439 LVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA-ATFVGVLSACVRAGLV 515 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~ 515 (680)
+..+|.+.++++.++..|++... .++.. ..+....++++.......- +.|.. .-...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 33456666777777777766442 11111 1223344555555544444 33432 1222235567788888
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
..|+..+.++.... +-|...|..-.-+|.+.|.+..|++-.+.. ...|+ ...|.--+.++....+++.|.+.|++++
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888765 557788888888888888888888776665 34443 5556556667777889999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 594 GLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
+.+|++..+...+.+............++.++
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999988888777777764434444444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-06 Score=78.82 Aligned_cols=410 Identities=12% Similarity=0.052 Sum_probs=207.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHH-HHHH
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGA-LIEF 262 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~ 262 (680)
+.+.+..+.+..+ +++|++++..-.+...+ +....+.+..+|-...++..|-..++++-.. .|...-|.. -...
T Consensus 13 ftaviy~lI~d~r-y~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDAR-YADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhh-HHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 5556666666666 67777776666555432 5555666666666666777777776666554 233333321 2233
Q ss_pred hhcCCCHHHHHHHHhhcCC-CccchhhHHH--HHHHhcCCHHHHHHHHHHhcc-CChhHHHHHHHHHhccCChhhHHHHH
Q 005732 263 YCGCEAFDGAMRVYDRLEN-PCLNASNSLI--NGLISMGRIEDAELIFNRLTE-ANSISYNSMIKGYAVYGQVDDSKRLF 338 (680)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~ 338 (680)
+.+.+.+.+|+.+...|.. +....-..-+ ......+++..+..++++... .+..+.+...-...+.|+++.|.+-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 4455566666666655542 1111101111 122334555555555555553 44444444444445556666666666
Q ss_pred hhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh----HHHHHHHhcccCCh
Q 005732 339 EKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRST----FSVLFHACSCLGSL 414 (680)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~ 414 (680)
....+-+- -.....|+.-+ +..+.++++.|++...++.+.|++..+.. ..-.+.+ ...|+.
T Consensus 168 qaAlqvsG-------------yqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt 232 (459)
T KOG4340|consen 168 QAALQVSG-------------YQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT 232 (459)
T ss_pred HHHHhhcC-------------CCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch
Confidence 55555332 12233444333 33344556666666666655554322210 0000000 000000
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGYSHHGLGSEAVLLFEI 489 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 489 (680)
..+.. ..-...+|.-...+.+.|+.+.|.+.+-.|.. .|+++...+.-. -..+++.+..+-+.-
T Consensus 233 ---~~lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 233 ---LVLHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQF 301 (459)
T ss_pred ---HHHHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHH
Confidence 00000 00112233334456678999999999999874 566666554322 124556666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHH
Q 005732 490 MLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PTLEHYTCVVDLLG-RSGHLHEAEEFIKDMPIELDAV 567 (680)
Q Consensus 490 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~ 567 (680)
+...+.- ...||..++-.||+..-++.|..++.+-...... .+...|+ |++++. ..-..++|.+-++.+.......
T Consensus 302 LL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~k 379 (459)
T KOG4340|consen 302 LLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEK 379 (459)
T ss_pred HHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6665432 4678888888999998888888877653322111 2333443 333333 3446667766665542100000
Q ss_pred HHHHH--HHHHHhcCC---HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 568 VWGAL--LSACWFWMN---MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 568 ~~~~l--~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.-... +..-...++ ...++.-|++.+++.- ......+++|++..++..+.+.|..-.+-
T Consensus 380 LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 380 LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 00011 111111121 1223333444444331 24567788999999999999999876653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-06 Score=87.63 Aligned_cols=59 Identities=5% Similarity=-0.089 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCC---------CCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKK---------PISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
...++...|+.++|...++.+....-. ........+.++.+.|++++|.+.+......+
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334455566666666666655442211 23344566667777788888877777766544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.7e-07 Score=81.03 Aligned_cols=287 Identities=13% Similarity=0.099 Sum_probs=206.0
Q ss_pred HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005732 318 YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT 397 (680)
Q Consensus 318 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 397 (680)
+..++..+.+..+++.|++++..-.++. +.+....+.|..+|....++..|-+.++++-. ..|.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~ 76 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--------------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPE 76 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChH
Confidence 5566666777888888888888777765 55777888899999999999999999999876 4455
Q ss_pred hhhHHH-HHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH--HHHhcCChHHHHHHHhcCCC-CCHHHHHHHHHH
Q 005732 398 RSTFSV-LFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD--MYSRCGSINDAQASFSSISS-PNVAAWTALMNG 473 (680)
Q Consensus 398 ~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~ 473 (680)
..-|.. -...+.+.+.+..|..+...|.+. +....-..-+. ..-..+++..+..+.+.... .+..+.+...-.
T Consensus 77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 77 LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 554433 234566778888899888887653 11111111111 22346788888888888874 555566555555
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-------------Chh-----
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP-------------TLE----- 535 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~----- 535 (680)
..+.|+++.|++-|+...+-+---....|+..+. ..+.|+++.|.+...++.++|++. |..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 6789999999999999887543334566765544 557789999999999998777532 211
Q ss_pred ---HHHHHHH-------HHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc
Q 005732 536 ---HYTCVVD-------LLGRSGHLHEAEEFIKDMP----IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS 601 (680)
Q Consensus 536 ---~~~~l~~-------~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 601 (680)
.-+.++. .+.+.|+++.|.+.+..|+ ...|+.|...+... -..++.....+-++-+++..|-+++
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChH
Confidence 1122333 3567899999999999994 44577777665432 2356777778888888999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
++..+.-+|++..-++-|.+++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 999999999999999999888744
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.2e-06 Score=82.91 Aligned_cols=291 Identities=10% Similarity=0.018 Sum_probs=150.4
Q ss_pred chhhHHHHHHHhcCCHHHHHHHHHHhccCChhH------HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhccc
Q 005732 285 NASNSLINGLISMGRIEDAELIFNRLTEANSIS------YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPE 358 (680)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 358 (680)
..+..+...+...|+.+.+...+.......... .......+...|++++|...+++.....
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------- 73 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY------------- 73 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 334555556666677777666666655544321 1112234456677777777777776654
Q ss_pred CCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchH
Q 005732 359 MERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTR-STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNV 433 (680)
Q Consensus 359 ~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 433 (680)
|.+...+.. ...+.. .+....+.+.+.. .....|+. .....+...+...|++++|...+++..+.. +.+.
T Consensus 74 -P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 74 -PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred -CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 444444442 222222 3344444444433 11122322 233344556667777788888877777765 5556
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHH-H-
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISS-----PNV--AAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPNAATF-V- 503 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~-~- 503 (680)
..+..+..++...|++++|...+++..+ ++. ..|..+...+...|++++|..++++...... .+..... .
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 6667777777777888888777776553 121 2344566677777888888888777754322 1111111 1
Q ss_pred -HHHHHHhccCCHHHHHHH--HHHH-HhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CC----C----CHH
Q 005732 504 -GVLSACVRAGLVNEGMKI--FRSM-KSYGV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP---IE----L----DAV 567 (680)
Q Consensus 504 -~ll~~~~~~g~~~~A~~~--~~~~-~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~----p----~~~ 567 (680)
.++.-+...|....+.++ +... ..... ............++...|+.++|..+++.+. .. . ...
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 308 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVG 308 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhh
Confidence 222223333432222222 1111 11100 0111111244555667777777777777651 11 0 011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
.......++...|++++|.+.+..++
T Consensus 309 ~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 309 LPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12222233456777777777776653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.4e-06 Score=93.17 Aligned_cols=365 Identities=10% Similarity=-0.001 Sum_probs=227.6
Q ss_pred HHHHhhcCCCHHHHHHHHhhcCCCcc--chhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHHHHHhccCChh
Q 005732 259 LIEFYCGCEAFDGAMRVYDRLENPCL--NASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMIKGYAVYGQVD 332 (680)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~ 332 (680)
....+...|++.+|............ .........+...|+.+.+...++.+.. .+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 34445566777766665555541111 1112233445567888888888877632 23333344455566788999
Q ss_pred hHHHHHhhcCcCCcchhhhHhhhcccCCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----hhHHHHHH
Q 005732 333 DSKRLFEKMPHRSIISLNTMISVIPEMERN--PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR----STFSVLFH 406 (680)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~ 406 (680)
++...+......-.... ....+. ......+...+...|++++|...+++....-...+. .....+..
T Consensus 427 ~a~~~l~~a~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 427 EVNTLLARAEQELKDRN-------IELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHHHHHHHHHHhccccC-------cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 99888876543210000 000111 122223344566899999999999988763211121 23445556
Q ss_pred HhcccCChHHHHHHHHHHHhc----CC-CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----CHHHHHHH
Q 005732 407 ACSCLGSLQQGQLLHAHLVKT----PF-ESNVYVGTSLVDMYSRCGSINDAQASFSSISS-------P----NVAAWTAL 470 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 470 (680)
.+...|+++.|...+.+.... |. .........+...+...|+++.|...+++... + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 677899999999998887753 21 11223455667778889999999998876542 1 12234455
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CChhHH-----HHH
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQ--DIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PTLEHY-----TCV 540 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l 540 (680)
...+...|++++|...+.+.... ...+. ...+..+.......|+++.|.+.+......... .....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66677889999999999887653 11222 334444566777899999999999888632111 111111 112
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC------CCchHHHHHH
Q 005732 541 VDLLGRSGHLHEAEEFIKDMPIE--LDA----VVWGALLSACWFWMNMEVGERAAQKMFGLDKK------PISAYVILSN 608 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~ 608 (680)
+..+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...+++++..... ...++..++.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24455689999999998776311 111 11345666778899999999999998875322 2345778899
Q ss_pred HHHhcCCchHHHHHHHHHhhCC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++.+.|+.++|.+.+.+..+..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-07 Score=85.33 Aligned_cols=182 Identities=13% Similarity=-0.052 Sum_probs=114.1
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----H
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN-V---AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA----A 500 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~ 500 (680)
.....+..++..+...|+++.|...|+++.+ |+ . ..+..+..++...|++++|+..++++.+. .|+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455566666677777777777777776653 22 1 35566667777777777777777777763 2321 1
Q ss_pred HHHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 005732 501 TFVGVLSACVRA--------GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGAL 572 (680)
Q Consensus 501 ~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 572 (680)
++..+..++... |+++.|.+.++.+.+..+. +...+..+..... ..... ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 333344444433 5666777777776643222 1112211111100 00000 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
...+...|++.+|...++++++..|+++ .++..++.++...|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999988754 679999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-07 Score=80.61 Aligned_cols=148 Identities=9% Similarity=0.113 Sum_probs=112.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...... +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457777877776444332221 11 0 1223566677777777777554 45788888899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 551 HEAEEFIKDM-PIEL-DAVVWGALLSAC-WFWMN--MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 551 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
++|...+++. ...| +...+..+..++ ...|+ .++|..+++++++.+|+++.++..++..+...|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 4455 677788888764 56677 59999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 005732 626 LTHLEV 631 (680)
Q Consensus 626 ~~~~~~ 631 (680)
+.+...
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 987654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.3e-06 Score=75.54 Aligned_cols=307 Identities=8% Similarity=0.027 Sum_probs=208.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhH---HHHHHHhcCCHHHHHHHHHHhcc--CChhH-HHHHHHHHhcc
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNS---LINGLISMGRIEDAELIFNRLTE--ANSIS-YNSMIKGYAVY 328 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~ll~~~~~~ 328 (680)
-..-+...+...|++..|+.-|......++..|.+ -...|...|+...|+.-+.++.+ ||-.. -..-...+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 33445566667778888888887777444444444 34578888888888888888877 44332 22234467788
Q ss_pred CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHH--HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005732 329 GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWN--SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFH 406 (680)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 406 (680)
|.++.|..-|+.+++.+.. -+......+...+....|+ ..+..+...|+...|++....+.+-. +.|...+..-..
T Consensus 120 Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 8999999888888876521 0000011111111122222 23445667899999999999998742 457777888888
Q ss_pred HhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHH----HHHHH---------H
Q 005732 407 ACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVA----AWTAL---------M 471 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l---------~ 471 (680)
+|...|.+..|+.-++...+.. ..+...+..+-..+...|+.+.+.....+..+ ||.. .|-.+ +
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888887776 55666677778888889999999988888775 4432 12111 2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAAT---FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
......+++.++++-.+...+........+ +..+-.++...+++.+|++...++.+.. +.|..++---..+|.-..
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhH
Confidence 234567888888888888877543322233 3445556678899999999999998643 224777777778899999
Q ss_pred ChHHHHHHHHhC-CCCCC
Q 005732 549 HLHEAEEFIKDM-PIELD 565 (680)
Q Consensus 549 ~~~~A~~~~~~~-~~~p~ 565 (680)
+++.|+.-|+.. ...++
T Consensus 356 ~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999987 34443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-06 Score=83.01 Aligned_cols=220 Identities=14% Similarity=0.163 Sum_probs=170.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhH
Q 005732 289 SLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVT 365 (680)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (680)
....-+.+.|++.+|.-.|+.... | +...|..|.......++-..|+..+.+..+.+ +.|...
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--------------P~Nlea 355 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--------------PTNLEA 355 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--------------CccHHH
Confidence 445567788999999999998877 3 45589999999999999999999999999988 788899
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----C---ChhhHHHHHHHhcccCChHHHHHHHHHHH-hcCCCchHhHH
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLAID-----R---TRSTFSVLFHACSCLGSLQQGQLLHAHLV-KTPFESNVYVG 436 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~ 436 (680)
...|.-.|...|.-..|+..|+.......+ + +...-.. ..+..........++|-++. ..+..+|+.+.
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 999999999999999999999998664311 0 0000000 12222223344455554444 45556888899
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 005732 437 TSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRA 512 (680)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 512 (680)
..|.-.|--.|++++|+..|+.+.. .|...||.|...++...+.++|+..|++..+ ++|+ ......|.-+|...
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhh
Confidence 9999999999999999999998874 5677999999999999999999999999998 7887 44555566778999
Q ss_pred CCHHHHHHHHHHHH
Q 005732 513 GLVNEGMKIFRSMK 526 (680)
Q Consensus 513 g~~~~A~~~~~~~~ 526 (680)
|.+++|.+.|-.+.
T Consensus 512 G~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 512 GAYKEAVKHLLEAL 525 (579)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998887665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-07 Score=75.75 Aligned_cols=93 Identities=9% Similarity=-0.094 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+..+...+...|++++|.+.|+.. ...| +...+..++.++...|++++|...|+++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334555666666777776666665 3333 56666667777777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHhhC
Q 005732 615 KWGKKMDIRKRLTHL 629 (680)
Q Consensus 615 ~~~~A~~~~~~~~~~ 629 (680)
++++|...+++..+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-07 Score=75.48 Aligned_cols=124 Identities=10% Similarity=-0.066 Sum_probs=100.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005732 484 VLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI 562 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 562 (680)
..++++..+ +.|+. +..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++. ..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666666 44554 4456677788899999999999888654 346778888889999999999999999987 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 563 EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 563 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
.| ++..+..++.++...|+.++|+..|+++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44 788889999999999999999999999999999999998888877544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-05 Score=77.84 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=124.5
Q ss_pred ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC-ChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCh--hHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG-SINDAQASFSSISS---PNVAAWTALMNGYSHHGLG--SEAVLL 486 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~~ 486 (680)
..++|......+++.. +.+..+|+.-..++...| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444433 333333333333344444 34555555555442 3333454443334444432 556777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHh
Q 005732 487 FEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS---GHL----HEAEEFIKD 559 (680)
Q Consensus 487 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~ 559 (680)
++++.+...+ |...|....-++...|+++++++.++++.+.++. +...|+....++.+. |.. ++++++..+
T Consensus 131 ~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 131 TRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 7777764322 4666666666666777777777777777765533 455555555444443 222 456666644
Q ss_pred C-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC------------------C
Q 005732 560 M-PIEL-DAVVWGALLSACWFW----MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG------------------K 615 (680)
Q Consensus 560 ~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~ 615 (680)
+ ...| |...|+.+...+... ++..+|...+.++.+.+|+++.++..|+.+|.... .
T Consensus 209 aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (320)
T PLN02789 209 AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSD 288 (320)
T ss_pred HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccccc
Confidence 4 4445 577777777777662 45567888899998989999888999999998632 2
Q ss_pred chHHHHHHHHHh
Q 005732 616 WGKKMDIRKRLT 627 (680)
Q Consensus 616 ~~~A~~~~~~~~ 627 (680)
.++|.++++.+.
T Consensus 289 ~~~a~~~~~~l~ 300 (320)
T PLN02789 289 STLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHHHH
Confidence 366888887774
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00012 Score=83.68 Aligned_cols=325 Identities=10% Similarity=-0.038 Sum_probs=210.7
Q ss_pred HhhcCCCHHHHHHHHhhcC----CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CC---h-----hHHHHHHHHH
Q 005732 262 FYCGCEAFDGAMRVYDRLE----NPCLNASNSLINGLISMGRIEDAELIFNRLTE----AN---S-----ISYNSMIKGY 325 (680)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~---~-----~~~~~ll~~~ 325 (680)
.....|+++.+..+++.+. ..++.........+...|+++++...+..... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445678888888877764 12222323444556678999999988887643 11 1 1122233456
Q ss_pred hccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---C--
Q 005732 326 AVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN----PVTWNSMISGYVQNNLHEKALQLYMTMRKLAID---R-- 396 (680)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---p-- 396 (680)
...|++++|...++....... ..+ ....+.+...+...|++++|...+.+.....-. +
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 463 INDGDPEEAERLAELALAELP-------------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCC-------------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence 688999999999988765210 111 234566677788899999999999888643111 1
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHhc----CCC---chHhHHHHHHHHHHhcCChHHHHHHHhcCCC------C-
Q 005732 397 TRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PFE---SNVYVGTSLVDMYSRCGSINDAQASFSSISS------P- 462 (680)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~- 462 (680)
...++..+...+...|+++.|...+++.... +.. .....+..+...+...|++++|...+.+... +
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 1234455666778899999999998877653 211 1233345566677788999999988877642 1
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--
Q 005732 463 -NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD--IVPNAA--T-F-VGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-- 533 (680)
Q Consensus 463 -~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~--~-~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 533 (680)
....+..+...+...|++++|...+.+..... ...... . . ...+..+...|+.+.|.+++...........
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 689 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF 689 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh
Confidence 13344556677888999999999998875421 111111 1 1 1122344568899999999877653211111
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 534 -LEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 534 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
...+..+..++...|++++|...+++. +..+ ...+...+..++...|+.++|...+.+++++....
T Consensus 690 ~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 690 LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 111345677788999999999988876 1222 13456667778889999999999999999977554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00095 Score=65.66 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCc-hHhHHHHHHHHHHhcCChHHHHHHHh
Q 005732 379 HEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFES-NVYVGTSLVDMYSRCGSINDAQASFS 457 (680)
Q Consensus 379 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (680)
.+...+.++++...-..--..+|...++...+...+..|..+|.++.+.+..+ ++.+.++++..||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55566666666543222223456667777777777788888888887776555 67777777776663 56667777776
Q ss_pred cCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 458 SISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 458 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
--.+ .++.--...+.-+...++-..|..+|++....++.|+ ...|..++.-=..-|+...+.++-++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5443 2333334455555666666777777777776655554 3556666665566666666666665555
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.3e-06 Score=77.87 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 005732 323 KGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFS 402 (680)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 402 (680)
..+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ . ..+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-------------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--e-D~~l~ 167 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-------------------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--E-DSILT 167 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-------------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--C-CHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc-------------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-cHHHH
Confidence 3445566666666666543 134445556666777777777777777766532 2 23333
Q ss_pred HHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHH
Q 005732 403 VLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYS 475 (680)
Q Consensus 403 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 475 (680)
.+..++.. .+.+..|..+|+++.+. .++++.+.+.+..+....|++++|.+++++... .++.+...++.+..
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 33333221 22455555555554433 234444445555455555555555554444332 22333333333334
Q ss_pred HcCCh-hHHHHHHHHHHH
Q 005732 476 HHGLG-SEAVLLFEIMLE 492 (680)
Q Consensus 476 ~~~~~-~~A~~~~~~m~~ 492 (680)
..|+. +.+.+++.++..
T Consensus 247 ~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HTT-TCHHHHHHHHHCHH
T ss_pred HhCCChhHHHHHHHHHHH
Confidence 44443 334444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-06 Score=89.21 Aligned_cols=200 Identities=13% Similarity=0.117 Sum_probs=160.3
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS--------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAAT 501 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 501 (680)
|.+...|-..|......++.+.|.++++++.. .-...|.++++.-...|.-+...++|+++.+ +--.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 55666777778888888899999888887763 2245777888777777877888899999887 3333567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 005732 502 FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL---DAVVWGALLSACW 577 (680)
Q Consensus 502 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~ 577 (680)
|..|...|.+.+.+++|.++++.|.+. +.-....|..++..+.+..+-++|..+++++ ..-| ........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888888999999999999999999842 2356788888999999999999999998876 3233 3445556666677
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
+.|+.+++..+|+..+...|.-...|..+++.-.++|..+.+.++|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998889999999999999999999999999887653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-05 Score=80.05 Aligned_cols=235 Identities=16% Similarity=0.152 Sum_probs=174.9
Q ss_pred CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCC
Q 005732 281 NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEME 360 (680)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (680)
+|....-..+...+...|-...|..+++++ ..|..++.+|+..|+..+|..+..+..++ +
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---------------~ 454 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---------------D 454 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---------------C
Confidence 333334455667777788888888888766 45677788888889889998888887773 6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
|++..|..+.+......-+++|.++.+..-.. .-..+.....+.++++++.+.++.-.+.. +....+|..+.
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G 526 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLG 526 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhcc
Confidence 88899999998888888889999988775332 11111222234688899999998888776 66778888888
Q ss_pred HHHHhcCChHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 005732 441 DMYSRCGSINDAQASFSSISS--P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNE 517 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 517 (680)
.+..+.++++.|.+.|..... | +...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.++.
T Consensus 527 ~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHH
Confidence 889999999999999987764 4 4678999999999999999999999999987733 45556666666788999999
Q ss_pred HHHHHHHHHhcC-CCCChhHHHHHHHHH
Q 005732 518 GMKIFRSMKSYG-VVPTLEHYTCVVDLL 544 (680)
Q Consensus 518 A~~~~~~~~~~~-~~~~~~~~~~l~~~~ 544 (680)
|++.+.++.+.. ...|..+...++...
T Consensus 606 a~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 606 AIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 999999887221 122444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-05 Score=68.32 Aligned_cols=152 Identities=15% Similarity=0.071 Sum_probs=86.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGM 519 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 519 (680)
...|+..|++++|.+.......-.....+ +..+.+..+.+-|.+.+++|.+ +. +..|.+.|..+|.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~-------- 181 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVK-------- 181 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHH--------
Confidence 34455666666666666553322222222 2233445555666666666655 21 44555555554432
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
.....+.+.+|.-+|+++ +..|++.+.+..+.++...|++++|+.+++.++..++
T Consensus 182 -----------------------la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 182 -----------------------LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred -----------------------HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 222334556666666666 2566666776666666777777777777777777777
Q ss_pred CCCchHHHHHHHHHhcCCchHHH-HHHHHHh
Q 005732 598 KPISAYVILSNIYAVLGKWGKKM-DIRKRLT 627 (680)
Q Consensus 598 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 627 (680)
+++.++.+++..-...|+-.++. +.+.+++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 77777777776666666654443 3344444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-05 Score=71.01 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
..+-..+...|+-+....+........ ..|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334455556666666666555544321 1133344445666666777777777777766433 45666777777777777
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 548 GHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 548 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
|++++|..-+.+. .+.| ++..++.+...+.-.|+.+.|+.++.++....+.+..+-..|+.+....|++++|.++...
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777666655 3334 4566677777777777777777777777777777767777777777777777777776533
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-07 Score=56.67 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=26.1
Q ss_pred cccCccchhhHHHHHhhcCCChhHHHHhhccCC
Q 005732 13 TQETLIVSTNKAITECGRNGQLVTARNLFDQMP 45 (680)
Q Consensus 13 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 45 (680)
+.+||+.+|+.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 457888888888888888888888888887774
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-06 Score=70.64 Aligned_cols=95 Identities=9% Similarity=-0.020 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
...-.+...+...|++++|.++|+.+ ...| +...|..|+.+|...|++++|+..|.++..++|+++.++.+++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33445566778899999999999987 4555 677888999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhC
Q 005732 613 LGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~ 629 (680)
.|+.+.|.+-|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-05 Score=71.19 Aligned_cols=135 Identities=13% Similarity=0.048 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALL 573 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 573 (680)
.|+......+-..+...|+-+....+....... ...|......++....+.|++.+|+..+.+. ..++|...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 454333355666777788888888777776532 2446667777999999999999999999998 4567899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.+|.+.|+.++|...|.+++++.|+++.++.+++..|.-.|+++.|..++......+.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999876654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.2e-06 Score=82.91 Aligned_cols=187 Identities=15% Similarity=0.140 Sum_probs=97.6
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
+|-...-..+...+...|-...|..+|+++ ..|...+-+|+..|+..+|..+..+-.+ -+|+..-|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444444455556666666666666666543 3455556666666666666666655555 345566666655555
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| ...+|..++.+..+.+++..|..
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 4444455555555544321 0011111122245555555555532 3222 34455555555555555555555
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 588 AAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.|.+.+.++|++..+|+++..+|.+.|+..+|...+++..+-+
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5555555555555555555555555555555555555554433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-05 Score=82.71 Aligned_cols=139 Identities=8% Similarity=-0.016 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVV 541 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 541 (680)
++..+..|.....+.|++++|+.+++...+ +.|+ ......+...+.+.+.+++|...+++..... +-+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 466666677777777777777777777777 5565 3445556666777777777777777777543 22455556666
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 542 DLLGRSGHLHEAEEFIKDMP-IEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
.++.+.|++++|..+|+++- ..| ++..+..+..++...|+.++|...|+++++...+-...|.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 67777777777777777762 233 3666777777777777777777777777776555434433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.8e-05 Score=68.15 Aligned_cols=154 Identities=11% Similarity=0.171 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGM 519 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 519 (680)
+..|...|+++.+....+.+..+. ..+...++.++++..+++..+.+ ..|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777777655543332221 01223566778888888887754 235788888888999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLL-GRSGH--LHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
..+++...... .+...+..+..++ ...|+ .++|.+++++. ...| +...+..++..+...|++++|+..++++++
T Consensus 94 ~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999987653 3677777778764 67777 59999999988 4455 678888888899999999999999999999
Q ss_pred CCCCCCchH
Q 005732 595 LDKKPISAY 603 (680)
Q Consensus 595 ~~p~~~~~~ 603 (680)
..|.+..-+
T Consensus 173 l~~~~~~r~ 181 (198)
T PRK10370 173 LNSPRVNRT 181 (198)
T ss_pred hCCCCccHH
Confidence 988875443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.4e-06 Score=69.86 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
.....+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++++.+|+++..+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34445556666777777777777665 2233 566777777777778888888888888888888887888888888888
Q ss_pred cCCchHHHHHHHHHhhC
Q 005732 613 LGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~ 629 (680)
.|++++|.+.+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.8e-05 Score=79.83 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
++..+...|...++++++..+++.+++.+|.+..+...++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33344445555666677777777777777666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.4e-05 Score=79.67 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=119.1
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHH
Q 005732 428 PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN-VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFV 503 (680)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 503 (680)
..+.+...+..|.....+.|..++|..+++.+.+ |+ ...+..+...+.+.+++++|+..+++.... .|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3467788999999999999999999999999875 54 557777889999999999999999999984 465 55666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALL 573 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 573 (680)
.+..++.+.|++++|..+|+++...+ +.+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 77788899999999999999999833 345788899999999999999999999987 3445555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.6e-07 Score=53.06 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 529 GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00026 Score=68.86 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=112.2
Q ss_pred HHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hhhHH
Q 005732 324 GYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT-RSTFS 402 (680)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 402 (680)
.+...|+.++|+..+..+.+.. |.|+..+....+.+.+.++..+|.+.++++... .|+ .....
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~--------------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~ 378 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ--------------PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQL 378 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHH
Confidence 4456788888888888877764 566777777788888999999999999988874 455 44556
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhH
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSE 482 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 482 (680)
.+..++.+.|++.+|..+++...... +.++..|..|.++|...|+..++... ....+...|++++
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~ 443 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHH
Confidence 66778888888888888888887776 77888889999999988888877754 3456778888999
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q 005732 483 AVLLFEIMLEQDIVPNAATF 502 (680)
Q Consensus 483 A~~~~~~m~~~~~~p~~~~~ 502 (680)
|+..+....+.. +++..++
T Consensus 444 A~~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 444 AIIFLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHHHHHhc-cCCcHHH
Confidence 988888887652 4444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.1e-05 Score=71.78 Aligned_cols=188 Identities=10% Similarity=0.036 Sum_probs=138.2
Q ss_pred HHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--H
Q 005732 442 MYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHG-LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL--V 515 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~ 515 (680)
.+...++.++|.....++.+ .+..+|+....++...| ++++++..++++.+.+.+ +...|..-...+.+.|. .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 34455677888888887765 33446666666666677 579999999999986533 34556655444555555 3
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HHHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW---MN----MEVGE 586 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~a~ 586 (680)
+++..+++++.+... -+...|+....++...|+++++++.++++ ...| +...|+.....+.+. |. .++++
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 678888888886553 46788888888899999999999999998 3334 677777777666544 22 35788
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 587 RAAQKMFGLDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
.+..++++.+|++..+|..++.++.. .++..+|.+.+.++.+.++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 88899999999999999999999988 3556778888888766443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0001 Score=68.96 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDI-VP-NAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
+...+.+.|++++|+..+++..+... .| ....+..+..++.+.|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445556666666666666555321 11 13445555555666666666666555554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00018 Score=78.32 Aligned_cols=196 Identities=15% Similarity=0.161 Sum_probs=116.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHhcc-C-------ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhccc
Q 005732 287 SNSLINGLISMGRIEDAELIFNRLTE-A-------NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPE 358 (680)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 358 (680)
|-..+.-..+.++.++|.++.++... - -...|.++++.-..-|.-+...++|+++.+..
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------------- 1527 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------------- 1527 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-------------
Confidence 44444555555555555555555544 1 11234444444444455666667777666643
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC-CchHhHHH
Q 005732 359 MERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF-ESNVYVGT 437 (680)
Q Consensus 359 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 437 (680)
.....|..|...|.+.+++++|.++|+.|.+. .......|...+..+.+..+-+.|..++.++.+.-. ........
T Consensus 1528 --d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1528 --DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred --chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 22345666777777777777777777777653 234455666666666677666777777766665421 11333444
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005732 438 SLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN 498 (680)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 498 (680)
..+..-.+.|+.+.+..+|+.... .-...|+..+..-.++|+.+.+..+|++....++.|-
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 445555566777777777766653 2355677777777777777777777777777666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=73.15 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=46.3
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~ 586 (680)
..+.+++.+|+..|.+.....+ -|...|..=..+|.+.|.++.|++-.+.. .+.|. ...|..|..++...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555555554321 13334444445555555555555555444 33442 445555555555555555555
Q ss_pred HHHHHHHcCCCCCC
Q 005732 587 RAAQKMFGLDKKPI 600 (680)
Q Consensus 587 ~~~~~~~~~~p~~~ 600 (680)
+.|+++++++|++.
T Consensus 170 ~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 170 EAYKKALELDPDNE 183 (304)
T ss_pred HHHHhhhccCCCcH
Confidence 55555555555553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00061 Score=66.39 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=101.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAAT-FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGR 546 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 546 (680)
...-.+...|++++|+..++.++.. .|+... .......+.+.++..+|.+.++++.... |+ ....-.+..+|.+
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~ 386 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHh
Confidence 3344456778888888888888773 455444 4444567788888888888888888643 33 5555567788888
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 005732 547 SGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRK 624 (680)
Q Consensus 547 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (680)
.|++.+|+.+++.. ..+.|+..|..|..+|...|+..++... .+..|...|+|+.|...+.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHH
Confidence 88888888888876 3444788888888888888887766543 4556667788888888888
Q ss_pred HHhhCC
Q 005732 625 RLTHLE 630 (680)
Q Consensus 625 ~~~~~~ 630 (680)
..+++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 777654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0066 Score=60.04 Aligned_cols=162 Identities=12% Similarity=0.062 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
..+|...|+...+....+.|..+|.++.+.+..+ +......++.-+ ..++.+.|.++|+.-.+. +..++......++
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3456666666666666777777777777766666 445555555543 346677777777765532 2233444456666
Q ss_pred HHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC----CchHHHHHHHHHhc
Q 005732 543 LLGRSGHLHEAEEFIKDMP---IEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP----ISAYVILSNIYAVL 613 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 613 (680)
.+...++-..|..+|++.- ..| ...+|...+.--..-|+.+.+..+-++.....|.+ ...-...+.-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 6777777777777777661 233 24667777766667777777777777777766632 12344455556566
Q ss_pred CCchHHHHHHHHHh
Q 005732 614 GKWGKKMDIRKRLT 627 (680)
Q Consensus 614 g~~~~A~~~~~~~~ 627 (680)
+.+..-..-++.+-
T Consensus 524 d~~~c~~~elk~l~ 537 (656)
T KOG1914|consen 524 DLYPCSLDELKFLG 537 (656)
T ss_pred ccccccHHHHHhhh
Confidence 66555555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0005 Score=74.25 Aligned_cols=242 Identities=13% Similarity=0.070 Sum_probs=127.1
Q ss_pred cCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHH
Q 005732 211 SGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSL 290 (680)
Q Consensus 211 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 290 (680)
.+..|.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+...++..++..+ .+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~----------- 89 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL----------- 89 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh-----------
Confidence 34444455666666666666777777776666555442 22233333333355555555544443 11
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc--CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTE--ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNS 368 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 368 (680)
+.......++.-...+...+.. .+..++..+..+|-+.|+.+++..+++++.+.+ +.|+.+.|.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------------~~n~~aLNn 155 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------------RDNPEIVKK 155 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------cccHHHHHH
Confidence 1111222222222223333333 233466677777777888888888888887776 567777777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCC
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGS 448 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (680)
+...|... +.++|.+++.+.... +....++..+..+|..+.... +.+...+..+.+.....-.
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhc
Confidence 77777777 788888777776542 334445566666666666554 2222222222222211100
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 449 INDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 449 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
.. .-+.++-.+...|...+++++++.+++.+.+...+ |.....-++.+|
T Consensus 219 ~~-----------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 219 FT-----------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred cc-----------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 11 12233334445555556666666666666653322 334444444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00022 Score=63.62 Aligned_cols=189 Identities=12% Similarity=0.026 Sum_probs=131.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005732 437 TSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEA-VLLFEIMLEQDIVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 515 (680)
..+.++|...|.......-......+.......+......-++.+.- .++.+.+.......+......-...|++.|++
T Consensus 45 ~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~ 124 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDF 124 (299)
T ss_pred HHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCCh
Confidence 33445566666655544444444444444444444444444444433 34455555555554544455555678999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQK 591 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 591 (680)
++|.+...... +......=+..+.+..+++-|.+.+++|..-.+..+.+.|..++.+ .+.+..|.-+|++
T Consensus 125 deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE 198 (299)
T KOG3081|consen 125 DEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEE 198 (299)
T ss_pred HHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 99998887622 2233333346677889999999999999655677888888888765 3468999999999
Q ss_pred HHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 592 MFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 592 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+-+..|..+......+.++...|+|++|..+++..+.+..
T Consensus 199 ~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 199 LSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9997777778999999999999999999999999988754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.4e-05 Score=63.71 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=89.7
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 005732 486 LFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE 563 (680)
Q Consensus 486 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 563 (680)
.++++.. ..|+ ......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|.+.++.. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555555 3444 3445566677888899999999998888654 346778888888999999999999988877 334
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 564 L-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 564 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
| +...+..+...+...|++++|...++++++.+|++...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 4 67788888889999999999999999999999988553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-05 Score=75.15 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=89.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC
Q 005732 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWM 580 (680)
Q Consensus 503 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g 580 (680)
..|+..+...++++.|+++++++.+.. |+ ....++..+...++-.+|.+++++. . .+.+...+......|...+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344555555667777777777777543 33 3334566666667777777777765 2 2336666666677788899
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
+++.|+.+.+++.+..|++-.+|..|+.+|...|++++|+-.++.+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999998887654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0085 Score=58.01 Aligned_cols=116 Identities=9% Similarity=0.074 Sum_probs=73.8
Q ss_pred hhcCCChhHHHHhhccCCCC---C------hhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--Hhc
Q 005732 28 CGRNGQLVTARNLFDQMPIR---T------VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSV--CAQ 96 (680)
Q Consensus 28 ~~~~g~~~~A~~~~~~~~~~---~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~--~~~ 96 (680)
+.+++++.+|.++|.++-+. + ...-+.+|++|... +.+.....+...++. .| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45788999999999887521 2 23456777887654 566666666666553 23 3334444443 346
Q ss_pred cCChHHHHHHHHHHHHh--CCC------------CcchhhhhHHHHHHcCCChHHHHHHHhhhcC
Q 005732 97 LNSLIDGKQIHCLVLKS--GYE------------CFEFVGSGLLFFYANCFEIEEAKRVFDELHE 147 (680)
Q Consensus 97 ~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 147 (680)
.+.+..|.+.+..-.+. +.. +|-..-+..++.+...|++.+++.+++++.+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 77888888877666554 221 2223335567778888888888888888753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00013 Score=64.48 Aligned_cols=189 Identities=14% Similarity=0.166 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHHh---cC-CCchHhH-HHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHH-HHHHHHcCChhHH
Q 005732 412 GSLQQGQLLHAHLVK---TP-FESNVYV-GTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTAL-MNGYSHHGLGSEA 483 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~A 483 (680)
.+.++..+++.++.. .| ..++..+ |..++-+...+|+.+.|...++.+.. |...-...| ..-+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 344555555555543 22 3444443 44455566667888888888777653 221111111 1123446778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005732 484 VLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI 562 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 562 (680)
+++++...+.+ +.|..++..-+...-..|...+|++-+....+. +..|...|.-+...|...|++++|.-.++++ -.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888765 334566666666666677777777777766643 5668888888888888888888888888887 34
Q ss_pred CC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCCCCch
Q 005732 563 EL-DAVVWGALLSACWFWM---NMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 563 ~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
.| ++..+..+...+.-.| +.+.|..+|.+++++.|.+...
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 44 5666666666554433 5677788888888888855333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.2e-06 Score=59.73 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHhhC
Q 005732 565 DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG-KWGKKMDIRKRLTHL 629 (680)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 629 (680)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999998764
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.7e-05 Score=62.43 Aligned_cols=94 Identities=14% Similarity=-0.009 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSN 608 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 608 (680)
+-.++..+.+.|++++|.+.++.+ ...|+ ...+..++.++...|++++|...++++.+..|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555666666666666555 12222 3345556666667777777777777777766664 345666677
Q ss_pred HHHhcCCchHHHHHHHHHhhCC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++...|++++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 7777777777777777766653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00031 Score=59.66 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh--hHHHHHHH
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTL--EHYTCVVD 542 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~ 542 (680)
|..++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+.+......+.. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 35666666666666665421110 122333445555666666666666666654322221 12223444
Q ss_pred HHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 543 LLGRSGHLHEAEEFIKDMPI-ELDAVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
.+...|++++|+..++.... ...+..+...+.++...|++++|...|+++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 45555555555555544421 112333344444445555555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.2e-06 Score=63.32 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005732 547 SGHLHEAEEFIKDM-PIEL---DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 547 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
.|+++.|+.+++++ ...| +...+..++.++.+.|++++|..++++ .+.+|.++.....++.++...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666665 2222 344555567777778888888888877 666776666666778888888888888887
Q ss_pred HHH
Q 005732 623 RKR 625 (680)
Q Consensus 623 ~~~ 625 (680)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-05 Score=73.96 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=71.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005732 506 LSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNME 583 (680)
Q Consensus 506 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 583 (680)
...+...|++++|++.|+++..... .+...|..+..+|.+.|++++|+..++++ ...| +...|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3455667778888888877776542 34566667777777777777777777776 3444 5666777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 584 VGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 584 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
+|+..|+++++++|+++.....+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777776665555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=57.33 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++..+...|++++|+..|+++++..|+++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677889999999999999999999999999999999999999999999999987654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.9e-05 Score=58.82 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777788888888888876 3334 44667777888888899999999999999999998888999999999999
Q ss_pred CchHHHHHHHHHhhCC
Q 005732 615 KWGKKMDIRKRLTHLE 630 (680)
Q Consensus 615 ~~~~A~~~~~~~~~~~ 630 (680)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.4e-06 Score=49.56 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 005732 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE 84 (680)
Q Consensus 50 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 84 (680)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888899999999999999999999888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.4e-06 Score=48.91 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 005732 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKL 82 (680)
Q Consensus 50 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 82 (680)
.+|+.+|.+|++.|+++.|..+|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888887776
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00048 Score=60.99 Aligned_cols=188 Identities=11% Similarity=0.056 Sum_probs=147.3
Q ss_pred cCChHHHHHHHhcCCC--------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCH
Q 005732 446 CGSINDAQASFSSISS--------PNV-AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGV-LSACVRAGLV 515 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~ 515 (680)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++..+- |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4578888888877652 333 345666777788999999999999998753 553322222 2334567999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
++|+++++.+.+.+ +.|..++-.=+-.....|+--+|++-+.+. .+..|...|..+...|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999765 456677776666777788888888877766 466799999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhcC---CchHHHHHHHHHhhCCCccCCc
Q 005732 594 GLDKKPISAYVILSNIYAVLG---KWGKKMDIRKRLTHLEVKKDPG 636 (680)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 636 (680)
=..|-++..+..++.+++-.| +..-|.+++.+..+...+...+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 999999999999999988766 6778999999998876644444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=69.65 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=71.7
Q ss_pred HHHhcCChHHHHHHHhcCCCCCHH-HHHHHHH--HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005732 442 MYSRCGSINDAQASFSSISSPNVA-AWTALMN--GYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 518 (680)
++.-.|+.++|.+.--.+.+.|.. .+...++ ++.-.++.+.|+..|++.+. ..|+...-...-..+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~--------- 246 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMP--------- 246 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhH---------
Confidence 444556666666555444432221 2222222 33445666777777777666 345543322211110
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-----IELDAVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
+.++.....| +-..+.|++.+|.+.+.+. . ..|++..|........+.|+.++|+.-.+.+
T Consensus 247 -k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 247 -KKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred -HHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 1111111111 2233444444444444443 2 2222333333333344455555555555555
Q ss_pred HcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 593 FGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 593 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
++++|.-..++...+.++...++|++|.+-+++..
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544445555555555555555555554444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0003 Score=59.80 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDA----VVWGAL 572 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l 572 (680)
..|..++..+ ..++...+...++.+........ ....-.+...+...|++++|.+.|+.. ...|++ .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47888999999999986432221 223334567788999999999999988 333443 244556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
...+...|++++|+..++.. ...+-.+..+..+|.+|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788899999999999773 233334567889999999999999999999864
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00033 Score=69.01 Aligned_cols=125 Identities=11% Similarity=0.093 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 515 (680)
...|+..+...++++.|..+|+++.+.++.....+++.+...++..+|++++++..+.. +-+...+..-...|...+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455666667788888888888887666666667788888888888888888888643 22455555566677888889
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPI 562 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (680)
+.|.++.+++.... +.+..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999998888653 33566888889999999999999988888863
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.016 Score=54.94 Aligned_cols=252 Identities=16% Similarity=0.122 Sum_probs=174.6
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCCh
Q 005732 372 GYVQNNLHEKALQLYMTMRKLAIDRTR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449 (680)
Q Consensus 372 ~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (680)
+-.-.|+++.|.+-|+.|... |.. .-+..+.-...+.|..+.|..+-+..-+.- +.-.....+.+...|..|++
T Consensus 129 aal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 344579999999999999752 221 123333444457899999999888877765 55667888999999999999
Q ss_pred HHHHHHHhcCC-----CCCHH--HHHHHHHHHH---HcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHH
Q 005732 450 NDAQASFSSIS-----SPNVA--AWTALMNGYS---HHGLGSEAVLLFEIMLEQDIVPNAA-TFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 450 ~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A 518 (680)
+.|+++++.-. +++.. .-..|+.+-. -..+...|...-.+..+ +.||.. .-.....++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99999998654 24432 1222332211 12345566665555555 677733 334456788999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
-.+++.+-+....|+. +.. ....+.|+. +..-+++. ..+| +..+...+..+....|++..|..--+.+.
T Consensus 283 ~~ilE~aWK~ePHP~i--a~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAWKAEPHPDI--ALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHHhcCCChHH--HHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 9999999987655553 322 234455543 33333322 2344 56777788888889999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHhhCCCccCCcee
Q 005732 594 GLDKKPISAYVILSNIYAVL-GKWGKKMDIRKRLTHLEVKKDPGCS 638 (680)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~ 638 (680)
...|.. .+|..|+++-... |+-.++...+-+..+. ..+|.|+
T Consensus 357 r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~ 399 (531)
T COG3898 357 REAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWT 399 (531)
T ss_pred hhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCccc
Confidence 999987 7888999988876 9999999998777653 3456554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=66.83 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=92.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHcCCCCCCchHHH
Q 005732 531 VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWF---WMNMEVGERAAQKMFGLDKKPISAYVI 605 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 605 (680)
+-|...|-.|...|...|++..|...|.+. .+ .+++..+..+..++.. .....++..+++++++++|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 557889999999999999999999999987 33 4467888888877654 235788999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhCCCccCCcee
Q 005732 606 LSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCS 638 (680)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 638 (680)
|+..+...|++.+|...|+.|.+.....+|+.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999998776666543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00016 Score=59.13 Aligned_cols=103 Identities=9% Similarity=-0.047 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVV--PTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALL 573 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 573 (680)
++..+...+...|++++|.+.|..+...... .....+..+..++.+.|++++|.+.++.+ ...|+ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666666643211 11334455666777777777777777765 22232 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 788888999999999999999888875443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.2e-05 Score=47.61 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR 398 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 398 (680)
+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999988873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.059 Score=57.04 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=80.9
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHH
Q 005732 60 SKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC--AQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEE 137 (680)
Q Consensus 60 ~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 137 (680)
...+++..|.....++.+. -||. .|..++.++ .+.|..++|..+++.....+.+ |..+...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4566788888887777654 2333 344444443 4677888888777777666655 77778888888888888888
Q ss_pred HHHHHhhhcCCc--hhHHHHHHHHHHhcCChh----hHHHHhccCCCCCeeeHHHHHHHHHhC
Q 005732 138 AKRVFDELHEDN--ELLWSLMLVGYVQCNLMS----DAFDVFIKMPKKDVVVWTKLISGYAKS 194 (680)
Q Consensus 138 a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~ll~~~~~~ 194 (680)
|..++++....+ ......+..+|++.+.+. .|+++++..++. ...+-.+++...+.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHh
Confidence 888888876543 333444555666655553 355666544433 33333444444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.06 Score=56.99 Aligned_cols=158 Identities=14% Similarity=0.082 Sum_probs=93.9
Q ss_pred hHHHHHHHhcccCChH---HHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHHHHHHHH
Q 005732 400 TFSVLFHACSCLGSLQ---QGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAAWTALMN 472 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~ 472 (680)
+.+.++..|.+.++.. +|+-+++...... +.+..+--.+++.|+-.|-...|.++|+.+.- .|+..|. +.+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 3456777888887765 3444444444443 55666667789999999999999999998863 3433332 334
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH---HHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIF---RSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
.+...|++..+...++....- ...+ ..+-..+..+| +.|.+.+..+.. +++..........+-+..++.++..+
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455667777777777665441 0001 12222233333 445555544332 23332222223344566777788888
Q ss_pred ChHHHHHHHHhCC
Q 005732 549 HLHEAEEFIKDMP 561 (680)
Q Consensus 549 ~~~~A~~~~~~~~ 561 (680)
+.+.-...++.|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8888888888774
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=54.69 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHH
Q 005732 495 IVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL---DAVVWG 570 (680)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~ 570 (680)
..|....-..|..+..+.|+..+|...|.+...--+-.|....-.+..+....+++..|...++++ ...| ++....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456666666777888888888888888888876656677777878888888888888888888876 2222 233445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.+...+...|.+..|+..|+.++...|+. ......+..+.++|+.++|..-+..+.+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 56777888999999999999999988886 56666778888899888887766665543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.2e-05 Score=46.51 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR 396 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 396 (680)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888876
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.04 Score=53.41 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLA-IDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
...|...+....+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-...- +.++.-.+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456666666666666778888888888777 5667777777777665 456667777776554442 333333345566
Q ss_pred HHHhcCChHHHHHHHhcCCC---CC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 442 MYSRCGSINDAQASFSSISS---PN--VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
.+...++-+.|..+|+...+ .+ ...|..++.--..-|+...+..+=++|.+ +.|...+.....+-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 66777888888888875542 12 34677777777777777777777777777 5566555555554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00026 Score=62.30 Aligned_cols=94 Identities=18% Similarity=0.079 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
.+..+...+...|++++|...+++. ...|+ ...+..++..+...|++++|...++++++..|+++..+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555556666666666666654 21221 346677777777888888888888888888888877777888888
Q ss_pred HhcCC--------------chHHHHHHHHHhhC
Q 005732 611 AVLGK--------------WGKKMDIRKRLTHL 629 (680)
Q Consensus 611 ~~~g~--------------~~~A~~~~~~~~~~ 629 (680)
...|+ +++|.+.+++....
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 77766 45566666555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.025 Score=54.26 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCC--hh
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-----PNAA-TFVGVLSACVRAGLVNEGMKIFRSMKSY--GVVPT--LE 535 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~ 535 (680)
.+..+...+.+.|++++|+++|++....... .+.. .|...+-++...||+..|.+.+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445667788889999999999888764322 1221 2333444566788888998888888743 33333 33
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCCCCCCHHHHHHH
Q 005732 536 HYTCVVDLLGR--SGHLHEAEEFIKDMPIELDAVVWGAL 572 (680)
Q Consensus 536 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l 572 (680)
....|+.++.. ...+++|+.-|+.+. +.|...-..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 45566666654 345677777777764 3444433333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00036 Score=63.64 Aligned_cols=99 Identities=20% Similarity=0.124 Sum_probs=78.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
.-+.+.+++++|+..|.+.++ +.|+ .+-|..=..+|.+.|.++.|++-.+.....+ +.....|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 446788999999999999999 5554 5666677788999999999999888888643 22467888999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH
Q 005732 551 HEAEEFIKDM-PIELDAVVWGALL 573 (680)
Q Consensus 551 ~~A~~~~~~~-~~~p~~~~~~~l~ 573 (680)
++|++.|++. .+.|+-.+|..-+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999999887 7888766664433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.054 Score=52.74 Aligned_cols=238 Identities=10% Similarity=0.085 Sum_probs=127.5
Q ss_pred HHHHHHHHHCCCCCChhh-HHHHHHHhcccCChHHHHHHHHHHHhcCCC----chHhHHHHHHHHHHhcCChHHHHHHHh
Q 005732 383 LQLYMTMRKLAIDRTRST-FSVLFHACSCLGSLQQGQLLHAHLVKTPFE----SNVYVGTSLVDMYSRCGSINDAQASFS 457 (680)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (680)
++++......-+.|+... ...+...+.. +.+++..+.+.+....+. --..++..++....+.++...|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444445555432 2333333333 455555555444433211 123456666677777777777777665
Q ss_pred cCC--CCCHHHHH-------HHHHHHH----HcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHH---HHhccCC-HHHHH
Q 005732 458 SIS--SPNVAAWT-------ALMNGYS----HHGLGSEAVLLFEIMLEQDIVPNAA-TFVGVLS---ACVRAGL-VNEGM 519 (680)
Q Consensus 458 ~~~--~~~~~~~~-------~l~~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~---~~~~~g~-~~~A~ 519 (680)
-+. .|+...-. .+-+..+ ..-+..+=+.+|+......+ |.. ....|+. -+-+.|. -++|+
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 543 23222111 1111111 11123334556666655332 321 1112222 2233444 77888
Q ss_pred HHHHHHHhcCCCCChhHHHHHH----HHHHhc---CChH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHH
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVV----DLLGRS---GHLH---EAEEFIKDMPIEL----DAVVWGALLSA--CWFWMNME 583 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~ 583 (680)
++++.+.... .-|..+-|... .+|.++ ..+. +-+.++++.+++| +...-+.|..| +..+|++.
T Consensus 401 nLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 401 NLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 8888887432 22333333221 222221 1222 2233455556555 34455666665 45789999
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 584 VGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 584 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
++.-+-.-..+..| ++.+|..+|-.+....+++||..++..+
T Consensus 480 kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 480 KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99988888889999 6799999999999999999999998765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.7e-05 Score=55.43 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=46.0
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...|++++|+..|+++++.+|+++.++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999899999999999999999999999887764
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0001 Score=53.96 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=52.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
..+...+++++|..+++++++.+|+++..+...+.++...|++++|.+.+++..+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4677899999999999999999999999999999999999999999999999987654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00072 Score=66.99 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=82.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
....+...|++++|+..|+++++... -+...|..+..+|...|++++|+..++++.... +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 45567788999999999999998542 246778888889999999999999999999764 3367788889999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHH
Q 005732 550 LHEAEEFIKDM-PIELDAVVWGALL 573 (680)
Q Consensus 550 ~~~A~~~~~~~-~~~p~~~~~~~l~ 573 (680)
+++|+..|++. ...|+.......+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999987 5666544444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00039 Score=60.91 Aligned_cols=93 Identities=10% Similarity=-0.146 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
...+..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566667777778888888887776 22222 3578888889999999999999999999999998888888888
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 005732 609 IYA-------VLGKWGKKMDIRKRL 626 (680)
Q Consensus 609 ~~~-------~~g~~~~A~~~~~~~ 626 (680)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666666543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0024 Score=66.15 Aligned_cols=137 Identities=14% Similarity=0.008 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHH--c---CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHHHh
Q 005732 462 PNVAAWTALMNGYSH--H---GLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRA--------GLVNEGMKIFRSMKS 527 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~ 527 (680)
.+...|...+++... . +....|..+|++..+ ..|+ ...+..+..++... ++...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666666655332 2 235688888888888 5576 34444433322211 111222222222222
Q ss_pred c-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 528 Y-GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 528 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
. ....+...|..+.......|++++|...++++ ...|+...|..++..+...|+.++|...+++++.++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1 12223344544444444455566665555555 3445555555555555556666666666666666665554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0018 Score=56.90 Aligned_cols=129 Identities=11% Similarity=0.064 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVV 541 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 541 (680)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+... .+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34455566666666777777777776665332222 24555566666666777777766666664321 1344444555
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 542 DLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
.++...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 5555555544443222211 123678888899999988887 444444444444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.3e-05 Score=43.75 Aligned_cols=31 Identities=29% Similarity=0.733 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 005732 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNV 80 (680)
Q Consensus 50 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 80 (680)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=54.63 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005732 513 GLVNEGMKIFRSMKSYGVV-PTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELD-AVVWGALLSACWFWMNMEVGERAAQ 590 (680)
Q Consensus 513 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 590 (680)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|.+++++.+..|. ......++.++...|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4444444444444432221 1222333344455555555555555544322222 2223333444455555555555554
Q ss_pred H
Q 005732 591 K 591 (680)
Q Consensus 591 ~ 591 (680)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0019 Score=54.06 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=75.5
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
.-+...|++++|..+|.-+ -.. -++..+..|..++...|++++|+..|..+..+++++|.+.+..+..|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3456789999999999877 223 36777888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 005732 620 MDIRKRLTH 628 (680)
Q Consensus 620 ~~~~~~~~~ 628 (680)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999988765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=50.96 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=50.1
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
+...+.+.|++++|.+.|+++ ...| +...+..++.++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999887 4455 677888888999999999999999999999999874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0083 Score=57.59 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMR 390 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~ 390 (680)
.|......|-..+++++|.+.|.+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHH
Confidence 45555666777777777777776664
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=50.91 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 585 (680)
.+...|++++|...++++.+... .+...+..+...+...|++++|.+.++.. ...| +...+..+...+...|+++.|
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 33344444444444444443211 12233344444455555555555555543 2122 334555566666666777777
Q ss_pred HHHHHHHHcCCC
Q 005732 586 ERAAQKMFGLDK 597 (680)
Q Consensus 586 ~~~~~~~~~~~p 597 (680)
...++++++..|
T Consensus 88 ~~~~~~~~~~~~ 99 (100)
T cd00189 88 LEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHccCC
Confidence 777777666655
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.055 Score=51.99 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHhcCChHHHHHHHhcCCC-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 005732 443 YSRCGSINDAQASFSSISS-------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGL 514 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~ 514 (680)
..+.|++..|.+.|.+... ++...|.....+..+.|+.++|+.--++..+ +.|. ...|..-..++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777766653 3445565566666677777777777776665 3322 2222223334555677
Q ss_pred HHHHHHHHHHHHh
Q 005732 515 VNEGMKIFRSMKS 527 (680)
Q Consensus 515 ~~~A~~~~~~~~~ 527 (680)
|++|.+-++...+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00073 Score=63.13 Aligned_cols=93 Identities=11% Similarity=-0.018 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSN 608 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 608 (680)
|...+..+.+.|++++|...|+.+ ...|+ +..+..++.++...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445567777777777665 22333 3455667777778888888888888888777775 445666677
Q ss_pred HHHhcCCchHHHHHHHHHhhC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~ 629 (680)
++...|++++|.++++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 787888888888888877664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.004 Score=54.51 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444445555555555555555555554321111 1244444455555555555555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00017 Score=42.13 Aligned_cols=30 Identities=43% Similarity=0.702 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAI 394 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 394 (680)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.006 Score=63.28 Aligned_cols=137 Identities=11% Similarity=0.044 Sum_probs=99.3
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC
Q 005732 494 DIVPNAATFVGVLSACVR--A---GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS--------GHLHEAEEFIKDM 560 (680)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 560 (680)
+...|...|...+.+... . ++...|..+|++..+..+. ....|..+..++... +++..+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345677888888887543 2 3477899999999975422 344555544444322 1233444544442
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 561 ----PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 561 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
....++..+..+.......|++++|...++++++++|. ...|..++.++...|+.++|.+.+++.....+.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 13345677888877777889999999999999999994 688999999999999999999999999876543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.018 Score=53.48 Aligned_cols=174 Identities=10% Similarity=-0.004 Sum_probs=103.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--CCH-H---HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005732 438 SLVDMYSRCGSINDAQASFSSISS--PNV-A---AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR 511 (680)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 511 (680)
.....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455667888888888877764 322 1 1234556777888888888888888774322222333333333321
Q ss_pred --c---------------CCH---HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005732 512 --A---------------GLV---NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGA 571 (680)
Q Consensus 512 --~---------------g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 571 (680)
. .+. ..|.+.|+.+++ .|=...-..+|...+..+.... ...-..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 111 223334444432 2222222334443333331010 111123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
+..-|.+.|.+..|..-++.+++..|+.+ ++...++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44557889999999999999999999864 457888999999999999999887664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0007 Score=66.29 Aligned_cols=67 Identities=13% Similarity=-0.099 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA---YVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+.++..++.+..+|...|++++|+..|+++++++|+++.+ |++++.+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3468889999999999999999999999999999998754 999999999999999999999998875
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00024 Score=51.12 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=34.4
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHH
Q 005732 546 RSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVIL 606 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 606 (680)
+.|++++|+++++++ ...| +...+..++.++.+.|++++|..+++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455566666666555 2223 555555666666666666666666666666666654444333
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0001 Score=43.87 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=31.0
Q ss_pred HHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 589 AQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999863
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0075 Score=57.59 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA-CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888899999999988543 2233444443333 44467777899999988854 55677888888899
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 544 LGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+.+.++.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999987 22233 3478888888888999999999999998888775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0028 Score=48.74 Aligned_cols=81 Identities=9% Similarity=-0.003 Sum_probs=68.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCcchh
Q 005732 51 SWNTMLCGYSKWAKFDESLSLVSTMHRSNV-KLNETTFSTILSVCAQLN--------SLIDGKQIHCLVLKSGYECFEFV 121 (680)
Q Consensus 51 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 121 (680)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .....+.+|+.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 899999999999987643 34557789999999999999999
Q ss_pred hhhHHHHHHc
Q 005732 122 GSGLLFFYAN 131 (680)
Q Consensus 122 ~~~l~~~~~~ 131 (680)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0021 Score=63.70 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=63.4
Q ss_pred CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc--CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHH
Q 005732 393 AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT--PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAA 466 (680)
Q Consensus 393 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 466 (680)
+.+.+...+..+++.+....+.+.+..++-..... ....-+.+..++++.|...|..+.+.++++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777776666654 2222233334555555555555555555544332 55555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 55555555555555555555555554444444444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0043 Score=49.79 Aligned_cols=86 Identities=10% Similarity=-0.080 Sum_probs=55.7
Q ss_pred HHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC---CCchHHHHHHHHHhc
Q 005732 542 DLLGRSGHLHEAEEFIKDM---PIELD--AVVWGALLSACWFWMNMEVGERAAQKMFGLDKK---PISAYVILSNIYAVL 613 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 613 (680)
.++-..|+.++|+.++++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444555555555555544 11111 334556667777788888888888888877777 555566677777888
Q ss_pred CCchHHHHHHHHHh
Q 005732 614 GKWGKKMDIRKRLT 627 (680)
Q Consensus 614 g~~~~A~~~~~~~~ 627 (680)
|++++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888775544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.22 Score=51.29 Aligned_cols=217 Identities=14% Similarity=0.073 Sum_probs=113.3
Q ss_pred CCCchHHHHHHHHhhcCCCHHHHHHHHhhcC-CCccchhhHH----------HHHHHhcCCHHHHHHHHHHhccCChhHH
Q 005732 250 EFDESIGGALIEFYCGCEAFDGAMRVYDRLE-NPCLNASNSL----------INGLISMGRIEDAELIFNRLTEANSISY 318 (680)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 318 (680)
.|.+..|..|.......-.++-|+..|-+.. -+.+.....+ ...-.--|++++|+++|-++...|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 5777888888887777777777777776655 2222111111 1122234788888888877765442
Q ss_pred HHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH--------
Q 005732 319 NSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMR-------- 390 (680)
Q Consensus 319 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-------- 390 (680)
.+..+.+.|+|-.+.++++.--...- ...-..+|+.+...+.....|++|.+.|..-.
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~d------------D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ec 831 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDD------------DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIEC 831 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHH
Confidence 34445556666666666554222110 01113345555555555555555554443321
Q ss_pred -------------HCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHh
Q 005732 391 -------------KLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFS 457 (680)
Q Consensus 391 -------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (680)
...++-+....-.+...+.+.|.-++|.+.+-+. + .| ...+..+...+++.+|.++-+
T Consensus 832 ly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 1123344445555666666666666665544321 1 11 123344555666667766666
Q ss_pred cCCCCCHHHHHH--------------HHHHHHHcCChhHHHHHHHHHHH
Q 005732 458 SISSPNVAAWTA--------------LMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 458 ~~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
...-|.+.+.-+ -|..+.+.|++-+|.+++.+|.+
T Consensus 903 ~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 555443333211 12334556666666667766654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00064 Score=49.02 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCC
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM-NMEVGERAAQKMFGLDK 597 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 597 (680)
+...|..+...+...|++++|+..|++. ...| ++..+..++.++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777778888888888888888876 3445 5777888888888898 79999999999999887
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=61.37 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..++..+..++.+.+++..|+....+++.++|+|..+++.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456667777778888888888888888888888888888888888888888888888887763
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0059 Score=50.92 Aligned_cols=91 Identities=9% Similarity=0.018 Sum_probs=71.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV 364 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (680)
..+...+...|++++|..+|+.+.. .+..-|..|..++-..|++++|+..|......+ +.++.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--------------~ddp~ 104 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--------------IDAPQ 104 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------CCCch
Confidence 4556666677777777777777665 345567778888888888888888888888776 57788
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
.+-.+..++...|+.+.|.+.|+.....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888999999999999988877653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.053 Score=50.43 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQ--DIVPNAATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+.+-|.+.|.+..|+.-++.+++. +..........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 334455666666666666666652 11112334445555666666666655554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.017 Score=51.71 Aligned_cols=132 Identities=11% Similarity=0.049 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH-----HH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV-----VD 542 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----~~ 542 (680)
+.++.++...|.+.-.+.++++.++....-+......|.+.-.+.||.+.|...|++..+..-..+....+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4444555555555556666666665443334444555555555566666666666655532222222222222 22
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 543 LLGRSGHLHEAEEFIKDMP-IEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.+.-+.++.+|...+.+.. ..| ++...|.-.-+..-.|+...|++.++.+++..|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2334455555555555542 112 33333444444444555555555555555555554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0067 Score=60.26 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHY 537 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (680)
.++++.|...|..+.++.+++.=...|+-||..+++.|+..+.+.|++..|.++...|...+...+..++
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 3455555555555555555555445555555555555555555555555555555544433333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.035 Score=49.79 Aligned_cols=169 Identities=9% Similarity=-0.001 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHhccCCCC--C--------eeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchH
Q 005732 152 LWSLMLVGYVQCNLMSDAFDVFIKMPKK--D--------VVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTF 221 (680)
Q Consensus 152 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--------~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 221 (680)
.|+++.+.+.-..-+.+-+..++.-..| . ...-+.++..+...+. +.-.++.+++.++..... ++...
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kE-y~iS~d~~~~vi~~~~e~-~p~L~ 215 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKE-YVLSVDAYHSVIKYYPEQ-EPQLL 215 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchh-hhhhHHHHHHHHHhCCcc-cHHHH
Confidence 3555555555444444444444433222 1 2234566667777777 888899999998866544 77778
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhC-----CCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHH
Q 005732 222 DSVIRACARLGAFCEGKVVHGLLIKCG-----FEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLING 293 (680)
Q Consensus 222 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 293 (680)
..+.+...+.|+.+.|...++...+.. ......+.......|..++++.+|...|.++. +.++..-|.-.-+
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 888888899999999999999776543 33334444445556777889999999998887 4555556777777
Q ss_pred HHhcCCHHHHHHHHHHhcc--CChhHHHHHH
Q 005732 294 LISMGRIEDAELIFNRLTE--ANSISYNSMI 322 (680)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll 322 (680)
+.-.|+..+|++.++.+.+ |...+-++++
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 7788999999999999988 5555444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.056 Score=45.87 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=57.3
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHH
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS----PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN---AATFV 503 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~ 503 (680)
|+...-..|..+....|+..+|...|++... .|......+.++....+++..|...++.+.+.+ |+ ..+..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchH
Confidence 4444444455555555555555555554442 444455555555555555555555555555422 21 12233
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (680)
.+...+...|.+..|..-|+...+.-..|... -.....+.+.|+..+|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar--~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQAR--IYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH--HHHHHHHHHhcchhHHH
Confidence 34445555555555555555555432222222 22234445555544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00066 Score=43.49 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
.++..+..++...|++++|+++|+++++.+|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999888887764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.3 Score=47.33 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=69.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 518 (680)
.+.-+...|+...|.++-.+..-|+-..|...+.+++..++|++-.++-.. .- .+.-|..++.+|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHH
Confidence 344455567777777777777667777777777777777777766654321 11 236677777777777777777
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
..+..++. +..-+..|.+.|++.+|.+..-+.
T Consensus 257 ~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 257 SKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77776622 133456777778877777765554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0086 Score=46.17 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=61.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHhcCCCCChhHHHH
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDI-VPNAATFVGVLSACVRAG--------LVNEGMKIFRSMKSYGVVPTLEHYTC 539 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~ 539 (680)
..|..+...+++...-.+|+.++..|+ .|+..+|+.++.+..+.. .+-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445556667889999999999999999 889999999988876532 24456778888888888888888888
Q ss_pred HHHHHHh
Q 005732 540 VVDLLGR 546 (680)
Q Consensus 540 l~~~~~~ 546 (680)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0067 Score=57.92 Aligned_cols=129 Identities=11% Similarity=0.082 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR-SGHLHEAEEFIKDM--PIELDAVVWGALLSAC 576 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 576 (680)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|-.....-.+ .++.+.|.++|+.. .+..+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467888888888899999999999998432 3345556555555334 56677799999987 3556788899999999
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...|+.+.|..+|++++..-|... ..|...+..-.+.|+.+...++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999876653 46888888888999999999999888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0039 Score=54.53 Aligned_cols=101 Identities=10% Similarity=0.083 Sum_probs=83.3
Q ss_pred hhHHHHhhccC--CCCChhhHHHHHHHHHc-----CCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----------
Q 005732 34 LVTARNLFDQM--PIRTVVSWNTMLCGYSK-----WAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQ---------- 96 (680)
Q Consensus 34 ~~~A~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~---------- 96 (680)
+..-...|++. ..+|-.+|..+++.|.+ .|..+-....+..|.+.|+.-|..+|+.||..+=+
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33445566665 56788899999999875 46788888899999999999999999999987654
Q ss_pred ------cCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCC
Q 005732 97 ------LNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFE 134 (680)
Q Consensus 97 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 134 (680)
..+.+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 23556799999999999999999999999999977664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.016 Score=46.58 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=56.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCC--chHhHHHHHHHHHH
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAIDRTR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFE--SNVYVGTSLVDMYS 444 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 444 (680)
+..++-..|+.++|+.+|++....|+.... ..+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677788888888888888887765542 34555666777778888887777777654211 12222222333455
Q ss_pred hcCChHHHHHHHhcC
Q 005732 445 RCGSINDAQASFSSI 459 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~ 459 (680)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 566666666655433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=46.94 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=51.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHH
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVI 605 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 605 (680)
..|.+.+++++|.++++.+ ...| ++..+...+.++...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5677888888888888887 4444 57777778888899999999999999999999987655433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.019 Score=53.74 Aligned_cols=100 Identities=7% Similarity=-0.088 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL----DAVVWGALL 573 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~ 573 (680)
.|...+..+.+.|++++|+..|+.+.+..+... ...+-.+..+|...|++++|...|+.+ ...| .+..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444434555777777777777775432211 245556777777788888888877776 2222 245555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
.++...|+.++|...|+++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677789999999999999999999874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.57 Score=48.43 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
+.+......+.+.+.+.|.-++|.+.|-+.-. | ...+..|....++.+|.++-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777776644311 1 134455666666666655543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0064 Score=57.90 Aligned_cols=258 Identities=12% Similarity=0.065 Sum_probs=158.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCC---CChhhHHHHHHHhcccCChHHHHHHHHHHH--h--cCC-CchHhHHHHHHHH
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAID---RTRSTFSVLFHACSCLGSLQQGQLLHAHLV--K--TPF-ESNVYVGTSLVDM 442 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~-~~~~~~~~~l~~~ 442 (680)
.-+|+.|+....+.+|+...+.|.. .=+.+|..+.++|.-.+++++|.++...=+ . .|- .........|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3578999999999999999987732 223457777788888899999988764221 1 010 0111222233444
Q ss_pred HHhcCChHHHHHHHhcCCC---------CCHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHH--
Q 005732 443 YSRCGSINDAQASFSSISS---------PNVAAWTALMNGYSHHGL--------------------GSEAVLLFEIML-- 491 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~-- 491 (680)
+--.|.+++|.-.-.+-.. .....+-.+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543222110 111223334444433221 233444443321
Q ss_pred --HCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH----hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 005732 492 --EQDIV-PNAATFVGVLSACVRAGLVNEGMKIFRSMK----SYGVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDM--- 560 (680)
Q Consensus 492 --~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 560 (680)
+.|-. .-...|..|...|.-.|+++.|+...+.-. +.|-.. ....+..+..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 012345566666667889999987765432 333221 2446777888999999999999988864
Q ss_pred ----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 561 ----P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGL----D--KKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 561 ----~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+ ......+..+|...|.-..++++|+.+..+=+.+ + .....+++.|+.++...|..+.|+.+.+.-++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 2234666778888888889999999988775443 2 22456799999999999999999998887664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.099 Score=51.00 Aligned_cols=37 Identities=27% Similarity=0.152 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 563 ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..+...+.+++.++.-.|++++|.+.+++++++.|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3466677888888889999999999999999997654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.41 Score=45.91 Aligned_cols=251 Identities=13% Similarity=0.093 Sum_probs=140.5
Q ss_pred hcCCHHHHHHHHHHhcc-CChhH--HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHH
Q 005732 296 SMGRIEDAELIFNRLTE-ANSIS--YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISG 372 (680)
Q Consensus 296 ~~g~~~~a~~~~~~~~~-~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~ 372 (680)
-.|+++.|.+-|+.|.. |.... ...|.-...+.|+.+.|.++-+..-..- +.-.-.+...+..
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------------p~l~WA~~AtLe~ 197 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------------PQLPWAARATLEA 197 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------------cCCchHHHHHHHH
Confidence 44666666666666665 33332 2223333446677777777776665543 3345567778888
Q ss_pred HHhCCChHHHHHHHHHHHHCC-CCCChhh--HHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCCh
Q 005732 373 YVQNNLHEKALQLYMTMRKLA-IDRTRST--FSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449 (680)
Q Consensus 373 ~~~~~~~~~A~~~~~~m~~~~-~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (680)
.+..|+++.|+++++.-+... +.++..- -..++.+-+ +. .-..+.
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA--------------~s------------------~ldadp 245 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA--------------MS------------------LLDADP 245 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH--------------HH------------------HhcCCh
Confidence 888888888888887765533 2232221 111111100 00 001112
Q ss_pred HHHHHHHhcCC--CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 450 NDAQASFSSIS--SPNVA-AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 450 ~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
..|...-.+.. .||.. .--.-..++.+.|+..++-.+++.+-+....|+. .. +....+.|+ .+..-+++..
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHH
Confidence 22222222222 13322 1222345678888888888888888886555543 21 112334443 4444444444
Q ss_pred -hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHcCCCC
Q 005732 527 -SYGVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACW-FWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 527 -~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~ 598 (680)
-...+| +....-.+..+-...|++..|..--+.. ...|....|..+...-. ..||-.++.+.+-++++..-+
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 112333 3445556667777888888877666655 45777888877776654 459999999999999885433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.015 Score=49.76 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=70.3
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 542 DLLGRSGHLHEAEEFIKDM-P-IEL-----DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
.-+.+.|++++|..-|... . .++ ....|..-..+..+.+.++.|+.-..+++++.|....++...+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4466778888887777665 2 122 13345555567788999999999999999999998888888899999999
Q ss_pred CchHHHHHHHHHhhC
Q 005732 615 KWGKKMDIRKRLTHL 629 (680)
Q Consensus 615 ~~~~A~~~~~~~~~~ 629 (680)
++++|++-++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999875
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0057 Score=58.24 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCCCCCcch----HHHHHHHHhccCChhhHHHHHH
Q 005732 190 GYAKSVDGCEKALKLFRWMRESGENMPNEYT----FDSVIRACARLGAFCEGKVVHG 242 (680)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~ 242 (680)
-+++.|+ ....+.+|+..++.|.. |..| |..|.++|.-.+++++|.+.+.
T Consensus 26 RLck~gd-craGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGD-CRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccc-hhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4566777 67777888877777644 4433 4445555556667777776654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0013 Score=48.79 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGL----DKKP---ISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..+++.+...+...|++++|+..+++++++ ++++ +.++..++.++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777888888889999999988888764 2222 44588899999999999999999988654
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.031 Score=45.81 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=62.9
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch---HHHHHHHHHh
Q 005732 541 VDLLGRSGHLHEAEEFIKDM----PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA---YVILSNIYAV 612 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 612 (680)
.....+.|++++|.+.|+.+ +..| .......++.++.+.|++++|...+++.+++.|.++.+ ++..|-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455778888888888877 2222 45566778888999999999999999999999998654 4455555555
Q ss_pred cCC---------------chHHHHHHHHHhhC
Q 005732 613 LGK---------------WGKKMDIRKRLTHL 629 (680)
Q Consensus 613 ~g~---------------~~~A~~~~~~~~~~ 629 (680)
... ...|..-|+++.+.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 544 55666666666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.023 Score=51.37 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=88.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 005732 440 VDMYSRCGSINDAQASFSSISS--P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR-- 511 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 511 (680)
...+...|++.+|.+.|+.+.. | -....-.++.++.+.|+++.|...++++++.-..-....+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3344555666666666665542 1 1234445666777777888888887777763211111222222222211
Q ss_pred -----------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005732 512 -----------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWM 580 (680)
Q Consensus 512 -----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 580 (680)
.+...+|...|+. ++..|=.+....+|.+.+..+.... ...-..++.-|.+.|
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTT
T ss_pred hCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc
Confidence 1112233333333 3333334444445544444432000 111123455678899
Q ss_pred CHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHH
Q 005732 581 NMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 621 (680)
.+..|...++.+++..|+.+ .+...++..|.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999974 457788899999999885543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.088 Score=53.49 Aligned_cols=100 Identities=11% Similarity=0.083 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHh
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLIS 296 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 296 (680)
+..+...+...+.+...+..|-++|..|-. ...++..+...++|++|..+-++.++--...|....+.++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 556666666677777788888888877633 23577888899999999999888874444445556666777
Q ss_pred cCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCc
Q 005732 297 MGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPH 343 (680)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 343 (680)
..++++|.+.| -+.|+-.+|.++++++..
T Consensus 817 ~DrFeEAqkAf------------------hkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAF------------------HKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHH------------------HHhcchHHHHHHHHHhhh
Confidence 77777776543 455777777777777654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.089 Score=52.14 Aligned_cols=145 Identities=11% Similarity=0.088 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 480 GSEAVLLFEIMLE-QDIVPN-AATFVGVLSACVR---------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 480 ~~~A~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
.+.|+.+|.+... ..+.|+ ...|..+..++.. ..+..+|.+.-++..+.+ +.|+.....+..++.-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4678888888882 235666 3444443333221 334556777777777665 346777777777778888
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH-HHhcCCchHHHHHHHH
Q 005732 549 HLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI-YAVLGKWGKKMDIRKR 625 (680)
Q Consensus 549 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 625 (680)
+++.|...|++. ...|| +..|......+...|+.++|.+.++++++++|.-..+-..-.++ .+-....++|++++-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 899999999887 45664 66677777777888999999999999999999875554433333 3334456677777643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.79 Score=48.66 Aligned_cols=174 Identities=13% Similarity=0.037 Sum_probs=108.8
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCCCCChhhHHH----HHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMPIRTVVSWNT----MLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQ 96 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~ 96 (680)
....++.+.+..-++-|..+-..-..+ ...-.. ..+-+.+.|++++|...|-+-... +.|. .+++-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 345566677777777777766543322 222222 234456788999998888776643 3333 34555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhH--HHHHHHHHHhcCChhhHHHHhc
Q 005732 97 LNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELL--WSLMLVGYVQCNLMSDAFDVFI 174 (680)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~ 174 (680)
......-..+++.+.+.|+. +...-+.|+.+|.+.++.++..+..+... .+.+. ....+..+-+.+-.++|.-+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 55666666677777888754 33444678899999999999888888775 33322 4556667777777777776666
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHH
Q 005732 175 KMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWM 208 (680)
Q Consensus 175 ~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 208 (680)
+-.. .......++.. .++ +++|++.+..|
T Consensus 488 k~~~-he~vl~ille~---~~n-y~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-HEWVLDILLED---LHN-YEEALRYISSL 516 (933)
T ss_pred Hhcc-CHHHHHHHHHH---hcC-HHHHHHHHhcC
Confidence 5444 33334444432 245 78888887766
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.025 Score=54.40 Aligned_cols=139 Identities=13% Similarity=-0.049 Sum_probs=97.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
.+.|.+.|++..|..-|++.... -. +...-+.++..... ..-..++..+..+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 45678888888888888886651 00 00111111111111 11234566677888889999
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH-HHHHHHHh
Q 005732 551 HEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK-MDIRKRLT 627 (680)
Q Consensus 551 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 627 (680)
.+|++..++. . .++|...+.--+.+|...|+++.|+..|+++++++|+|-.+...++.+-.+..++.+. .++|..|.
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888876 3 3457777777888999999999999999999999999988888888887776665554 78888887
Q ss_pred hCC
Q 005732 628 HLE 630 (680)
Q Consensus 628 ~~~ 630 (680)
.+-
T Consensus 354 ~k~ 356 (397)
T KOG0543|consen 354 AKL 356 (397)
T ss_pred hcc
Confidence 643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.022 Score=50.00 Aligned_cols=88 Identities=14% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------------CCHHHHH
Q 005732 461 SPNVAAWTALMNGYSH-----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRA----------------GLVNEGM 519 (680)
Q Consensus 461 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------g~~~~A~ 519 (680)
..+-.+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3555566666666653 466677777788888888888899999998877542 2345677
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSG 548 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (680)
+++++|...|+.||..++..+++.+++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 88888888888888888888877776554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=53.71 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=52.4
Q ss_pred hcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHHHHHhcCC
Q 005732 546 RSGHLHEAEEFIKDM----P---IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSNIYAVLGK 615 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 615 (680)
+.|++.+|...|... + ..|+. +..|+.++...|+++.|...|..+.+..|++ |+.+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 445566666555544 1 22333 3336667777777777777777777766664 4457777777777777
Q ss_pred chHHHHHHHHHhhCC
Q 005732 616 WGKKMDIRKRLTHLE 630 (680)
Q Consensus 616 ~~~A~~~~~~~~~~~ 630 (680)
.++|..+|+++.++-
T Consensus 231 ~d~A~atl~qv~k~Y 245 (262)
T COG1729 231 TDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 777777777776543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.037 Score=47.04 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
....++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++++++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556667778899999999999999999999999999999999999999999999988763
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.77 Score=44.51 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=37.9
Q ss_pred HHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHh
Q 005732 260 IEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFE 339 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 339 (680)
+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+... ...+..|..++.+|.+.|+..+|..++.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 33334445555555555444444444445555555555555544443322 1233455555555555555555555544
Q ss_pred h
Q 005732 340 K 340 (680)
Q Consensus 340 ~ 340 (680)
+
T Consensus 262 k 262 (319)
T PF04840_consen 262 K 262 (319)
T ss_pred h
Confidence 4
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.15 Score=51.90 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 005732 366 WNSMISGYVQNNLH--EKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 366 ~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 423 (680)
++..=.+|.+..+. -+.+.-++++++.|-.|+... +...|+-.|.+.+|.++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 33444455554432 344555677777777777653 34455667777777777654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.053 Score=49.05 Aligned_cols=142 Identities=10% Similarity=-0.002 Sum_probs=76.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR 546 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 546 (680)
.....+...|++++|+..|+.+...-.... ......++.++.+.|+++.|...+++..+.-+.....-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344456677778888888777776422111 334455666777777777777777777644332222222222222211
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc-----------------hHHHHHHH
Q 005732 547 SGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS-----------------AYVILSNI 609 (680)
Q Consensus 547 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 609 (680)
........ ......+...+|...++..++..|+++- .-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000 0112334556677777777777777632 23367888
Q ss_pred HHhcCCchHHHHHHHHHhhC
Q 005732 610 YAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~ 629 (680)
|.+.|++..|..-++.+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999998874
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.3 Score=46.43 Aligned_cols=339 Identities=14% Similarity=0.146 Sum_probs=181.5
Q ss_pred hCCCCCchHHHH-----HHHHhhcCCCHHHHHHHHhhcCCCc---cchhhHHHHHHHhcCC---HHHHHHHHHHhcc--C
Q 005732 247 CGFEFDESIGGA-----LIEFYCGCEAFDGAMRVYDRLENPC---LNASNSLINGLISMGR---IEDAELIFNRLTE--A 313 (680)
Q Consensus 247 ~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~--~ 313 (680)
-|++.+..-|.. +++-+...+.+..|.++-.-+.-|. ...|.....-+++..+ .+.+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 356666555543 4555667788888888877776222 2334555555555532 2223333333333 3
Q ss_pred ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005732 314 NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLA 393 (680)
Q Consensus 314 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 393 (680)
+..+|..+.+.....|+.+.|..+++.=...+..+.-. .+..-+...+.-....|+.+-...++-.+.+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lL---------L~m~~~~~AL~kaies~d~~Li~~Vllhlk~~- 575 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLL---------LKMKDSSLALKKAIESGDTDLIIQVLLHLKNK- 575 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHH---------hccchHHHHHHHHHhcCCchhHHHHHHHHHHH-
Confidence 45578888887888899998888887654433211000 01122333444455666666666665555432
Q ss_pred CCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHH--hcC-----CCCCHHH
Q 005732 394 IDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASF--SSI-----SSPNVAA 466 (680)
Q Consensus 394 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~-----~~~~~~~ 466 (680)
.+...|...+ .+...|..+|.+..+..-.. .+-..|-. ++...+...| +.. ..+-...
T Consensus 576 --~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~ 640 (829)
T KOG2280|consen 576 --LNRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA 640 (829)
T ss_pred --HHHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh
Confidence 1111111111 12233444444443321000 01111211 2211111111 110 0111112
Q ss_pred HHHHHHHHHHcCChh---HH-------HHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh
Q 005732 467 WTALMNGYSHHGLGS---EA-------VLLFEIMLE-QDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLE 535 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~---~A-------~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (680)
......++.+..... +| +++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ .||..
T Consensus 641 lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr 716 (829)
T KOG2280|consen 641 LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKR 716 (829)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchh
Confidence 222333444433311 11 122222221 1222333445555556777888888888777655 56777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
.|-.=+.++...+++++-+++-+..+ ++.-|.-...+|.+.|+.++|..++-+.-. +...+.+|.+.|+
T Consensus 717 ~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 717 LWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGD 785 (829)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhcc
Confidence 88878889999999999888888774 245566788889999999999988866522 2267888999999
Q ss_pred chHHHHHHHH
Q 005732 616 WGKKMDIRKR 625 (680)
Q Consensus 616 ~~~A~~~~~~ 625 (680)
+.+|.++.-+
T Consensus 786 ~~eAad~A~~ 795 (829)
T KOG2280|consen 786 VKEAADLAAE 795 (829)
T ss_pred HHHHHHHHHH
Confidence 9999887544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.92 Score=44.51 Aligned_cols=136 Identities=9% Similarity=-0.018 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD-IVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV 540 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 540 (680)
.-...|...+....+....+.|..+|-+..+.| +.++...++.++..+ ..|++..|..+|+.-... ++.+....+..
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~-f~d~~~y~~ky 472 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK-FPDSTLYKEKY 472 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh-CCCchHHHHHH
Confidence 445678888888888888999999999999988 567778888888755 468889999999876643 23333444566
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 541 VDLLGRSGHLHEAEEFIKDM--PIELD--AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+..+.+-++-+.|..+|+.. .+..+ ..+|...+.--..-|+...+..+-+++.+..|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77788899999999999965 22223 6678888887788999999999999999988885
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.62 Score=42.44 Aligned_cols=174 Identities=16% Similarity=0.046 Sum_probs=94.7
Q ss_pred HHhcCChHHHHHHHhcCCC--C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----
Q 005732 443 YSRCGSINDAQASFSSISS--P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR----- 511 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----- 511 (680)
-.+.|++++|.+.|+.+.+ | ...+--.++-++.+.+++++|+..+++.......-....|...|.+++.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3455667777777766653 1 2234445566777788888888888887764322222334444443331
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 512 --AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 512 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
..|...+.+-+..+.+ ++.-|=.+.-..+|..-+..+... -...=..+..-|.+.|.+..|..-+
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA-LAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHH
Confidence 2233333333332221 000000011111111111111000 0001123445678899999999999
Q ss_pred HHHHcCCCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 590 QKMFGLDKKPIS---AYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 590 ~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+.+++..|+.+. ++..+..+|.+.|..++|.+.-+-+...
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999888644 4677788999999999999887666543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.16 Score=47.13 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS---GHLHEAEEFIKDM-PIEL-DAVVWGAL 572 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p-~~~~~~~l 572 (680)
|...|..|...|...|+.+.|..-|....+.. .+++..+..+..++..+ ..-.++.++|+++ ...| |......|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 56777777777777777777777777777542 33555666666655433 2345677888877 4455 56666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
...+...|++.+|...++.+++..|.+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 778888999999999999999988776
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.93 Score=42.00 Aligned_cols=197 Identities=18% Similarity=0.102 Sum_probs=115.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSIS-----SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLS 507 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 507 (680)
...+......+...++...+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444455555566666666665555442 23344455555556666667777777777666433321 11222222
Q ss_pred -HHhccCCHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 005732 508 -ACVRAGLVNEGMKIFRSMKSYGV--VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD--AVVWGALLSACWFWMN 581 (680)
Q Consensus 508 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 581 (680)
.+...|+++.|...+.+...... ......+......+...++.+.|...+.+. ...++ ...+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56677777777777777654211 112233333334455667777777777766 22332 5666666667777777
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 582 MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 582 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++.|...+..+....|.....+..++..+...|.++++...+.+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888777755556666666666666777777777766543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.075 Score=52.64 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHH-hcCCCCC-hhHHHHHHHHHHh---------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005732 514 LVNEGMKIFRSMK-SYGVVPT-LEHYTCVVDLLGR---------SGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM 580 (680)
Q Consensus 514 ~~~~A~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 580 (680)
..+.|..+|.+.. .....|+ ...|..+..++.. .....+|.++.++. ...| |+.....++.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3567788888888 3334554 4444444443322 22334566666555 4444 7888888888888888
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
+++.|...|+++..++|+.+.++...++++.-.|+.++|.+.+++..+..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 9999999999999999999999999999999999999999999997665443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.7 Score=44.60 Aligned_cols=408 Identities=11% Similarity=0.043 Sum_probs=217.3
Q ss_pred CeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcch-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHH
Q 005732 180 DVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYT-FDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGA 258 (680)
Q Consensus 180 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 258 (680)
+-..|..+|.---.... .+.+...+..+...- | .... |......-.+.|..+.+.++|+.-+.. ++.+...|..
T Consensus 44 ~f~~wt~li~~~~~~~~-~~~~r~~y~~fL~ky--P-l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIED-VDALREVYDIFLSKY--P-LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhH-HHHHHHHHHHHHhhC--c-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHH
Confidence 33445555554433333 455556666665432 2 3332 233444445677888888888887653 5666677776
Q ss_pred HHHHhhc-CCCHHHHHHHHhhcC------CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHh---c-
Q 005732 259 LIEFYCG-CEAFDGAMRVYDRLE------NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYA---V- 327 (680)
Q Consensus 259 li~~~~~-~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~---~- 327 (680)
+...++. .|+.+.....|+... --+...|...|..-..++++.....+++++.+-....|+..-.-|. +
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 6665544 577777777777766 2233345677777777888888888888888833333333322221 1
Q ss_pred -----cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh-CCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 328 -----YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ-NNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 328 -----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
....+++.++-.....+...+ ...........-+.--.. .+..+++...+.+...
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~---------~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---------- 259 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKIT---------HSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---------- 259 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcc---------cccChhHHHHHHHhhccCccchhhHHHHHHHHHHH----------
Confidence 112233322222221100000 000001111111100000 0111111111111100
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhc---C----CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CHHHHHHHH
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKT---P----FESNVYVGTSLVDMYSRCGSINDAQASFSSISSP---NVAAWTALM 471 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~---~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~ 471 (680)
.--..+-...........++.-++. . .+++...|...+..-...|+.+.+.-.|+...-| -...|-..+
T Consensus 260 -~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~ 338 (577)
T KOG1258|consen 260 -IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYA 338 (577)
T ss_pred -HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 0001111111222223333333322 1 1345667788888888899999999888887643 234555555
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 550 (680)
.-....|+.+-|..++....+-..+-...+-..-...+-..|++..|..+++.+...- |+ ...-..-+....+.|+.
T Consensus 339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcch
Confidence 5445558888888887776664333222222222223355789999999999998543 33 22333345566788888
Q ss_pred HHHH---HHHHhC-CCCCCHHHHH----HHHHH-HHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 551 HEAE---EFIKDM-PIELDAVVWG----ALLSA-CWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 551 ~~A~---~~~~~~-~~~p~~~~~~----~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+.+. +++... ..+-+..+.. ...+. +...++.+.|..++.++.+..|++...|..++......+
T Consensus 417 ~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 417 EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 8888 555444 2222322222 22222 334789999999999999999999888888888776655
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0067 Score=44.92 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-------P-IELD-AVVWGALLSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
+++.+...|...|++++|++.+++. + ..|+ ..++..++.++...|++++|+.++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555555555555555555443 1 1122 456677777777888888888888877653
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.049 Score=43.13 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=66.6
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC----chHHHHHHHHHhcCC
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI----SAYVILSNIYAVLGK 615 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 615 (680)
-++...|+++.|++.|.+. .+- ..+..|+.-..++.-.|+.++|+.-+++++++..+.. .+|...+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3466778888888888776 333 3677788888888888888888888888888754432 236677778888888
Q ss_pred chHHHHHHHHHhhCCC
Q 005732 616 WGKKMDIRKRLTHLEV 631 (680)
Q Consensus 616 ~~~A~~~~~~~~~~~~ 631 (680)
-+.|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888776663
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.075 Score=49.04 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGA---LLSACWFWMNMEV 584 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~ 584 (680)
.....|+..+|..+|+........ +...--.++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 456678888888888887754333 244555677888888888888888888863333222222 1222222222222
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEEC-CeEEEEecCCCCCCChhHHH
Q 005732 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELN-SRVHAFSVEDRNNPNCNVIY 663 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 663 (680)
.. -+++-...+|++...-..++..+...|+.++|.+.+=.+.+++.--..| +.. ..+..|.-=+..||...+.+
T Consensus 222 ~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~----~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 222 IQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG----EARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc----HHHHHHHHHHHhcCCCCHHHHHHH
Confidence 22 2445567788888888899999999999999988887776543211111 110 11122222244577777777
Q ss_pred HHHHHH
Q 005732 664 ATLEHL 669 (680)
Q Consensus 664 ~~~~~~ 669 (680)
.||..+
T Consensus 297 RkL~sl 302 (304)
T COG3118 297 RKLYSL 302 (304)
T ss_pred HHHHHh
Confidence 777654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.09 E-value=2.3 Score=44.73 Aligned_cols=120 Identities=13% Similarity=-0.038 Sum_probs=59.6
Q ss_pred HHHHHHcCCChHHHHHHHhhhcCCc---hhHHHHHHHHHHhcCCh---hhHHHHhccCCC--CCeeeHHHHHHHHHhCCC
Q 005732 125 LLFFYANCFEIEEAKRVFDELHEDN---ELLWSLMLVGYVQCNLM---SDAFDVFIKMPK--KDVVVWTKLISGYAKSVD 196 (680)
Q Consensus 125 l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~ 196 (680)
+++-++..+.+..|.++-+.+..+. ...|......+.+..+. +.+..+-+++.. -+..+|..+.+.....|+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 4555666667777777766665543 45555555555554221 222233333333 344566666665556666
Q ss_pred ChHHHHHHHHHHHHcCCCCC---CcchHHHHHHHHhccCChhhHHHHHHHHH
Q 005732 197 GCEKALKLFRWMRESGENMP---NEYTFDSVIRACARLGAFCEGKVVHGLLI 245 (680)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 245 (680)
++-|..+++.=...+...| +..-+...+.-+...|+.+....++-.+.
T Consensus 523 -~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 523 -FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred -HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5666655543221111100 22234455555556666655555544443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.85 Score=42.41 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=109.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
......|++.+|..+|+........ +......+..+|...|+.+.|..++..+-..--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788899999999888875322 345666778889999999999999988763222222223334456677777777
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 552 EAEEFIKDMPIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLD--KKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 552 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -++...-..+..++.-.|.-+.+.-.+++
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7777777765456 77788888889999999999999888887754 34567788889999888866555444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.22 Score=39.69 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=84.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (680)
.-.|..++..++..+.... .+..-++-++--...+-+-+-..+.++.+ |-..|. ..+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHHH
Confidence 4467778888888887763 24455555554444444444444444333 222222 2345555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 555 EFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 555 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
..+-.++ .+.......+..+...|.-++-..++..+.+.+..+|+....++.+|.+.|+..+|.+++++.=++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555553 345566777788889999999999999998766667789999999999999999999999999888864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.14 Score=43.38 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-----hcCCCCChhHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-----SYGVVPTLEHY 537 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 537 (680)
....++..+...|++++|+.+.+.+.... +-|...+..++.++...|+...|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456667778888888888888888743 2257788888888888888888888888775 45777776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.73 Score=41.32 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=40.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----CCCCCchHHHHH
Q 005732 540 VVDLLGRSGHLHEAEEFIKDMP-------IELD-AVVWGALLSACWFWMNMEVGERAAQKMFGL----DKKPISAYVILS 607 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~ 607 (680)
....|.+..++++|-..+.+-+ ..|+ -..+...+..+....|+..|+..++...+. .|++..+...|.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3345555555655555444431 1122 122333344444555666666666665443 233444444555
Q ss_pred HHHHhcCCchHHHHHH
Q 005732 608 NIYAVLGKWGKKMDIR 623 (680)
Q Consensus 608 ~~~~~~g~~~~A~~~~ 623 (680)
..| ..|+.+++.+++
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 444 345555555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.2 Score=43.68 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh---CCChHHHHHHHHHHHH
Q 005732 315 SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ---NNLHEKALQLYMTMRK 391 (680)
Q Consensus 315 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~ 391 (680)
..+...++-+|....+++...++.+.+....... .......-....-++.+ .|+.++|++++..+..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~----------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD----------VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc----------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 3345566667888899999999999887742100 01223333345556677 8999999999999777
Q ss_pred CCCCCChhhHHHHHHHh
Q 005732 392 LAIDRTRSTFSVLFHAC 408 (680)
Q Consensus 392 ~~~~p~~~~~~~ll~~~ 408 (680)
..-.+++.+|..+...|
T Consensus 211 ~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIY 227 (374)
T ss_pred ccCCCChHHHHHHHHHH
Confidence 77778888888877665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.35 Score=44.38 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP--TLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIEL-DAVVWGALL 573 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 573 (680)
.|+..+. +.+.|++..|...|....+..+.. ....+-.|..++...|++++|...|..+ +..| .+..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544444 345566777777776666432211 1233445677777788888887777665 2233 467778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
.+..+.|+.++|...|+++.+..|+.+.+-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888899999999999999999999975543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.66 E-value=3.2 Score=43.10 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHhcc--CChhHHHHH-HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHH
Q 005732 297 MGRIEDAELIFNRLTE--ANSISYNSM-IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGY 373 (680)
Q Consensus 297 ~g~~~~a~~~~~~~~~--~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~ 373 (680)
....+.|.++++.+.. |+...|... .+.+...|++++|.+.|++....... + .+.....+--+.-.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~----~------~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE----W------KQLHHLCYFELAWCH 315 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh----H------HhHHHHHHHHHHHHH
Confidence 3456777777877777 776666544 45666778888888888865542100 0 122334455566677
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc-ccCCh-------HHHHHHHHHHH
Q 005732 374 VQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACS-CLGSL-------QQGQLLHAHLV 425 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~-------~~a~~~~~~~~ 425 (680)
.-..+|++|.+.|..+.+.. ..+..+|.-+..+|. ..++. ++|..++.++.
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77888888888888887743 334444544444332 45555 66666766554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.032 Score=33.09 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..+..++..+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566667777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.1 Score=47.39 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=85.9
Q ss_pred HHHhhccCC--CCChhhHHHHHHHHHcC-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc------------
Q 005732 37 ARNLFDQMP--IRTVVSWNTMLCGYSKW-----AKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQL------------ 97 (680)
Q Consensus 37 A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~------------ 97 (680)
.+..|+..+ ++|-.+|-+++..|... +..+-....++.|.+.||.-|..+|+.||+.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 66888999999888653 56777778899999999999999999999986552
Q ss_pred ----CChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCCh-HHHHHHHhhhc
Q 005732 98 ----NSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEI-EEAKRVFDELH 146 (680)
Q Consensus 98 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 146 (680)
....-+..++++|...|+.||..+-..|++++.+.+-. .+..+++-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23455888999999999999999999999999888753 34455555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.1 Score=39.55 Aligned_cols=221 Identities=19% Similarity=0.107 Sum_probs=157.4
Q ss_pred CCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHhcccCChHHHHHHHHHHHhc-CCCchHhHHHHHHHHHHhcCChHHHH
Q 005732 376 NNLHEKALQLYMTMRKLAID-RTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT-PFESNVYVGTSLVDMYSRCGSINDAQ 453 (680)
Q Consensus 376 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (680)
.+....+...+......... .....+......+...+....+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666666553322 13466677777778888888888888777653 33556666777777788888888999
Q ss_pred HHHhcCCC--CCH-HHHHHHHH-HHHHcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 454 ASFSSISS--PNV-AAWTALMN-GYSHHGLGSEAVLLFEIMLEQDIVP----NAATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 454 ~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 88887764 222 22333333 78899999999999999866 333 3344444455567789999999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 526 KSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
...........+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 86432224667778888899999999999999887 44454 555556666666777899999999999999987
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.029 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777788888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.77 Score=45.76 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=30.7
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNV----AAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
.+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555554432 221 2345555555555555555555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.36 Score=38.59 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcC
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
....++.+...|+-+.-.+++..+.+ .-.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444555555555555554443 123444444455555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=5.5 Score=43.07 Aligned_cols=229 Identities=12% Similarity=0.025 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCc--chHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHH
Q 005732 198 CEKALKLFRWMRESGENMPNE--YTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRV 275 (680)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 275 (680)
.+.|..++..........+.. .....+.......+....+...++..... ..+......-+......++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 688999998875544221111 12233333333332245555555543322 22445555556666689999999999
Q ss_pred HhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhH
Q 005732 276 YDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTM 352 (680)
Q Consensus 276 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 352 (680)
+..|. .....+..-+.+++...|+.++|...|+.+..+ .+|..++.+ .+.|..-. +.. ..... ....
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~fYG~LAa-~~Lg~~~~----~~~-~~~~~-~~~~- 404 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RGFYPMVAA-QRLGEEYP----LKI-DKAPK-PDSA- 404 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCcHHHHHH-HHcCCCCC----CCC-CCCCc-hhhh-
Confidence 99987 445566777888888899999999999998653 233333221 11221100 000 00000 0000
Q ss_pred hhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHh-----c
Q 005732 353 ISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVK-----T 427 (680)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~ 427 (680)
...+. -..-+..+...|+...|...+..+... .+......+.......|..+.+......... .
T Consensus 405 ------~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~ 473 (644)
T PRK11619 405 ------LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEE 473 (644)
T ss_pred ------hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHH
Confidence 01111 122345567789999999888887763 3444445555555566776666555433221 1
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHH
Q 005732 428 PFESNVYVGTSLVDMYSRCGSINDA 452 (680)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A 452 (680)
.++ ..|...+..+.+...++.+
T Consensus 474 rfp---~~~~~~~~~~a~~~~v~~~ 495 (644)
T PRK11619 474 RFP---LAWNDEFRRYTSGKGIPQS 495 (644)
T ss_pred hCC---cchHHHHHHHHHHcCCCHH
Confidence 211 1355555555555444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.21 E-value=3 Score=39.86 Aligned_cols=62 Identities=8% Similarity=0.108 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccCCh---hhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 317 SYNSMIKGYAVYGQV---DDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
++..++.+|...+.. ++|.++++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--------------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--------------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--------------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455556666655543 34444555554332 223444444555555567777777777777664
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.65 Score=43.61 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=54.5
Q ss_pred cCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhccCCHHHH
Q 005732 446 CGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGV----LSACVRAGLVNEG 518 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~g~~~~A 518 (680)
.|+..+|-..++++.+ .|..++.---.+|...|+.+.-...+++.... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444442 34445555555555666665555555555432 12333222211 1223345556666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
.+.-++..+.+ +.|..........+.-.|++.++.++..+-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 65555555433 223344444555555566666666655544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.6 Score=36.52 Aligned_cols=125 Identities=12% Similarity=0.026 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
..++..+...+.......+++.+...+. .+....+.++..|++.+ .....+.++. ..+.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3556666677778888888888887763 56667777888777653 3444444442 12334445567778888
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 548 GHLHEAEEFIKDMPIELDAVVWGALLSACWFW-MNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 548 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
+-++++.-++.+++... ..+..+... ++.+.|.+++.+ +.++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 88888888888876321 122223333 778888887776 234456666665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.8 Score=46.68 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
..+.++..+-+.|..+.|+++..+- ..-.....+.|+++.|.++.++.. +...|..|.....+.|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 3455555555555555555554432 333333444444444444332222 333455555555555555555
Q ss_pred HHHHhhc
Q 005732 335 KRLFEKM 341 (680)
Q Consensus 335 ~~~~~~~ 341 (680)
++.|.+.
T Consensus 367 e~c~~k~ 373 (443)
T PF04053_consen 367 EECYQKA 373 (443)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 5555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.37 Score=39.22 Aligned_cols=47 Identities=11% Similarity=0.263 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 495 IVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
..|+..+..+++.+|+..|++..|.++++... ..+++.+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33444445555555555555555555554444 333444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.06 E-value=9.3 Score=46.31 Aligned_cols=311 Identities=10% Similarity=0.006 Sum_probs=177.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhc----c--CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC
Q 005732 289 SLINGLISMGRIEDAELIFNRLT----E--ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN 362 (680)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~----~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 362 (680)
.+..+-.+.+.+..|...+++-. + ....-|..+...|+..+++|....+...-.. .|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----------------~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----------------DPS 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----------------Ccc
Confidence 44556678888999999998832 2 2223444455589999999888877764111 122
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHH-HHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGT-SLVD 441 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 441 (680)
...-|.-....|++..|...|+.+.+.+ ++...+++.++......|.+.......+-..... .+....++ .=+.
T Consensus 1452 ---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~e 1526 (2382)
T KOG0890|consen 1452 ---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVE 1526 (2382)
T ss_pred ---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHH
Confidence 2234455677899999999999998754 3346778888888778888887777655554433 33333333 3345
Q ss_pred HHHhcCChHHHHHHHhcCCCCCHHHHHHH--HHHHHHcCChh--HHHHHHHHHHHCCCCCC---------HHHHHHHHHH
Q 005732 442 MYSRCGSINDAQASFSSISSPNVAAWTAL--MNGYSHHGLGS--EAVLLFEIMLEQDIVPN---------AATFVGVLSA 508 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~~~~p~---------~~~~~~ll~~ 508 (680)
+-.+.++++....... ..+...|... +....+..+-+ .-....+.+++.-+.|- ...|..++..
T Consensus 1527 aaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kL 1603 (2382)
T KOG0890|consen 1527 AAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKL 1603 (2382)
T ss_pred HHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHH
Confidence 5577888888777765 3344444443 22222222211 11223333333211110 1223333322
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHH---HHHHHHHhcCChHHHHHHH---HhC----CCC-----CCHHHHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYT---CVVDLLGRSGHLHEAEEFI---KDM----PIE-----LDAVVWGALL 573 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~---~~~----~~~-----p~~~~~~~l~ 573 (680)
..-. +.+.-.+.+ .+..++..+.+ .+..-+.+.+....+.+-+ .+. ... .-..+|....
T Consensus 1604 H~l~-el~~~~~~l-----~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsA 1677 (2382)
T KOG0890|consen 1604 HLLL-ELENSIEEL-----KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSA 1677 (2382)
T ss_pred HHHH-HHHHHHHHh-----hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 2111 011111111 11122211110 0111222222222222221 111 112 2366888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
..++..|.++.|...+-++.+.. .+..+...+..+...|+...|+.++++-.+...
T Consensus 1678 riaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1678 RIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99999999999999998888877 457899999999999999999999999886543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.69 Score=39.09 Aligned_cols=85 Identities=11% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
+...|++++|..+|+-+...+.. +..-+..|..++-..+++++|+..|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34455555555555555442211 222233333344445555555555554442221 1222222334445555555555
Q ss_pred HHHHHhC
Q 005732 554 EEFIKDM 560 (680)
Q Consensus 554 ~~~~~~~ 560 (680)
.+.|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.4 Score=38.74 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=45.4
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
+..-.+.|++++|.+.|+.+..+.... +-...+--.++.++.+.++++.|+..+++....-..-....|
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s-----------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFS-----------PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-----------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 334456677777777777777655321 333455556667777888888888888887764322222334
Q ss_pred HHHHHHh
Q 005732 402 SVLFHAC 408 (680)
Q Consensus 402 ~~ll~~~ 408 (680)
..-|.++
T Consensus 110 ~~YlkgL 116 (254)
T COG4105 110 AYYLKGL 116 (254)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=6.8 Score=42.40 Aligned_cols=77 Identities=8% Similarity=-0.062 Sum_probs=35.6
Q ss_pred hHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 550 LHEAEEFIKDMP-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 550 ~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
.++|...++... ...+......-+......++++.+...+..+-......+...+-+++++...|+.++|...|+++
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455444431 11233333333333335555555555555543322223344555555555556666666655554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.54 Score=46.95 Aligned_cols=153 Identities=13% Similarity=0.047 Sum_probs=84.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
|.-.-+..+++.-+++-+++.+ +.||-.+...++ +-..+....+|.+++++..+.|-. .+..- ......|.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~- 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH- 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc-
Confidence 3333455566666666677766 566643332222 223455678888888887754311 00000 00000111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 551 HEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK--PISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 551 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
..+.+..-...|-..+-..+..++.+.|+.++|++.++.+++..|. +......|+..+...+++.++..++.+-.+
T Consensus 246 --~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 --FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred --hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1111111112222333345666677788888888888888877665 344677888888888888888888877654
Q ss_pred CCCccC
Q 005732 629 LEVKKD 634 (680)
Q Consensus 629 ~~~~~~ 634 (680)
....+.
T Consensus 324 i~lpkS 329 (539)
T PF04184_consen 324 ISLPKS 329 (539)
T ss_pred ccCCch
Confidence 433333
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.8 Score=44.89 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=101.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCh-----hhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhH
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLA-IDRTR-----STFSVLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYV 435 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 435 (680)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.+.+++..+.+.- |.+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 4456666667889999999988876533 22111 134444444333 456778888888887763 333333
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISS-------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA 508 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 508 (680)
.-.-.+.+...|++++|++.|+.... -....+--++..+.-..++++|.+.|..+.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 33445677788999999999986542 223344456667778888999999999988753 2234455544443
Q ss_pred H-hccCCH-------HHHHHHHHHHH
Q 005732 509 C-VRAGLV-------NEGMKIFRSMK 526 (680)
Q Consensus 509 ~-~~~g~~-------~~A~~~~~~~~ 526 (680)
| ...|+. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 456666 77777777765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.80 E-value=2 Score=35.54 Aligned_cols=114 Identities=9% Similarity=-0.048 Sum_probs=63.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVP--NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
....+.|++++|++.|+.+..+-... ....-..++.++.+.+++++|...+++..+.++.....-|...+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 33456677777777777776642111 1344555666777777777777777777765554444445444444443222
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 550 LHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 550 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
.+..+.-+- +.. ...+....|..-|+++++..|++.
T Consensus 98 ~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 221111111 111 122345678888888888888874
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.12 Score=41.10 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=52.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..++...|+.+.|++.|.+++.+-|..+++|++.+.++.-+|+.++|++-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 446778999999999999999999999999999999999999999999999998873
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.42 Score=38.92 Aligned_cols=79 Identities=9% Similarity=0.078 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC---------------CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHh
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKL---------------AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 426 (680)
|..++..+|.++++.|+.+....+++..=.- ...|+..++.+++.+|+..+++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3567888999999999999988888765211 1233444444444444444444444444444433
Q ss_pred c-CCCchHhHHHHHH
Q 005732 427 T-PFESNVYVGTSLV 440 (680)
Q Consensus 427 ~-~~~~~~~~~~~l~ 440 (680)
. +++.+..++..|+
T Consensus 81 ~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLL 95 (126)
T ss_pred HcCCCCCHHHHHHHH
Confidence 2 3333344444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.34 E-value=2.4 Score=35.52 Aligned_cols=84 Identities=10% Similarity=0.134 Sum_probs=44.7
Q ss_pred HHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 005732 319 NSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR 398 (680)
Q Consensus 319 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 398 (680)
..++..+.+.+........++.+...+ +.+...++.++..|++.+ ..+.++.++. ..+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--------------~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~ 69 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--------------SENPALQTKLIELYAKYD-PQKEIERLDN------KSNH 69 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--------------ccchhHHHHHHHHHHHHC-HHHHHHHHHh------cccc
Confidence 345555555566666666666666654 345556677777776553 3344444432 1233
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHH
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~ 423 (680)
.....++..|.+.+.++++..++..
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHh
Confidence 3344455555555555555444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.42 Score=45.35 Aligned_cols=224 Identities=15% Similarity=0.062 Sum_probs=124.4
Q ss_pred HHhCCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc--CCCch---HhHHHHHHHHHHh
Q 005732 373 YVQNNLHEKALQLYMTMRKLA--IDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT--PFESN---VYVGTSLVDMYSR 445 (680)
Q Consensus 373 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 445 (680)
+..+.+.++|+..+.+-...- ..-...+|..+..+.++.|.++++...--.-++. ..... ...|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888988887765421 1222346777777778888777765543322221 11111 2233334444444
Q ss_pred cCChHHHHHHHhcCCC-----C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhcc
Q 005732 446 CGSINDAQASFSSISS-----P---NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---VP--NAATFVGVLSACVRA 512 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~ 512 (680)
..++.+++.+=+.-.. + ......++..++...+.++++++.|+...+--- .| .-..+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444443332211 1 112334466677777778888888877664210 11 124567777777788
Q ss_pred CCHHHHHHHHHHHH----hcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 005732 513 GLVNEGMKIFRSMK----SYGVVPTLEHYT-----CVVDLLGRSGHLHEAEEFIKDM-------PIEL-DAVVWGALLSA 575 (680)
Q Consensus 513 g~~~~A~~~~~~~~----~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~ 575 (680)
.|+++|.-+..+.. ..++..-...|. .+..++...|++.+|.+..++. +.++ -......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 88888876665554 223222122222 3444566677777777666654 2222 24445566677
Q ss_pred HHhcCCHHHHHHHHHHHHcCC
Q 005732 576 CWFWMNMEVGERAAQKMFGLD 596 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~ 596 (680)
|...|+.+.|..-|+++....
T Consensus 256 yR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhcccHhHHHHHHHHHHHHH
Confidence 777888888877777765443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.7 Score=35.96 Aligned_cols=121 Identities=10% Similarity=0.040 Sum_probs=54.7
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCc
Q 005732 70 SLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDN 149 (680)
Q Consensus 70 ~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 149 (680)
+.+..+.+.+++|+...+..++..+.+.|...... .++..++-+|.......+-.+. +....+.++=-.|.++=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 33444455666666666777777766666554332 3333443333333222221111 12223333333332222
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCC
Q 005732 150 ELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVD 196 (680)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 196 (680)
...+..++..+...|++-+|+++.++....+......++.+..+.++
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSND 135 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCC
Confidence 22344455555555555555555555444333334444444444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.9 Score=41.12 Aligned_cols=196 Identities=10% Similarity=0.063 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHH-HHHHC-CCCCC---hhhHHHHHHHhcccCChHHHHHHHHHHHhc-CCCc---hHhH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYM-TMRKL-AIDRT---RSTFSVLFHACSCLGSLQQGQLLHAHLVKT-PFES---NVYV 435 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~-~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~ 435 (680)
++..+..+.++.|.+++++..-- .|.-. ...-+ -..|..+.+++.+..++.+++.+-..-... |..+ ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 34445556666666666554321 11100 01111 123444445555555555555555544432 2222 1233
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCCHHHH
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISS---------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLE----QDIVPNAATF 502 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~ 502 (680)
...+..++.-.+.++.+.+.|+...+ .....+-.|...|.+.+++++|.-+..+..+ -++.--...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44566777777888888888877653 1235788888999999999999888776654 2332112222
Q ss_pred -----HHHHHHHhccCCHHHHHHHHHHHH----hcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 503 -----VGVLSACVRAGLVNEGMKIFRSMK----SYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 503 -----~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
..+.-++...|....|.+..++.. ..|-.+. ......+.+.|...|+.+.|..-++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 234456777888888888888765 3332221 334557788899999999998888765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.9 Score=42.77 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=104.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChH
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIN 450 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (680)
....-.++++++.+..+.-.-.. .........++.-+.+.|-.+.|.++.. |+. .-.+...++|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHH
Confidence 44556788888777764211100 1124457778888888899998888843 332 2345567899999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 005732 451 DAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGV 530 (680)
Q Consensus 451 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 530 (680)
.|.++.++.. +...|..|.....+.|+++-|++.|++... +..|+-.|...|+.+.-.++.+.....|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9999887765 667999999999999999999998887532 44555567778888887777777765542
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005732 531 VPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPI 562 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (680)
++....++.-.|+.++..+++.+.+.
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 44555666677888888888887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.02 E-value=6.5 Score=39.23 Aligned_cols=150 Identities=11% Similarity=-0.018 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP---NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEH 536 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 536 (680)
....+|..++..+.+.|+++.|...+.++...+..+ .......-+..+-..|+..+|+..++.........+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344567777888888888888888888877643211 222333334455567788888888877765222211 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEF-IKDMPIELDAVVWGALLSACWFW------MNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
...+...+.. ..+..... ........-...+..+..-+... ++.+++...|+.+.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000122333333333344 788999999999999999988888888887
Q ss_pred HHhc
Q 005732 610 YAVL 613 (680)
Q Consensus 610 ~~~~ 613 (680)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.5 Score=44.34 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEE
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVH 647 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (680)
..+.+-.++.+.++++.|.++.+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P---------------- 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP---------------- 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC----------------
Confidence 3566667888999999999999999999999998899999999999999999999999877642
Q ss_pred EEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 648 AFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
.+|....|.+.++.+.++.+
T Consensus 247 -------~dp~a~~ik~ql~~l~~~~~ 266 (269)
T PRK10941 247 -------EDPISEMIRAQIHSIEQKQI 266 (269)
T ss_pred -------CchhHHHHHHHHHHHhhcCc
Confidence 57888888888888877653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.86 E-value=4.8 Score=36.36 Aligned_cols=204 Identities=17% Similarity=0.167 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMY 443 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (680)
..|..-..+|-...++++|...+.+..+. ...+...|. . ...++.|..+.+++.+. +--...|+.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555666777888888888877776531 111111111 1 12234444444444332 12233455556677
Q ss_pred HhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHhccCCHHHH
Q 005732 444 SRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ---DIV--PNAATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~--p~~~~~~~ll~~~~~~g~~~~A 518 (680)
..+|.++.|-..+++.- -.....++++|+++|++...- +-+ --...+..+-..+.+...+++|
T Consensus 102 ~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 77777776665544321 123455677788877776541 101 0122344445566677777776
Q ss_pred HHHHHHHH----hcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC---C--C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 519 MKIFRSMK----SYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIKDM---P--I-ELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 519 ~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~--~-~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
-..+.+-. ...--++ -..|-..|-.+.-..++..|.+.++.- + . ..+..+...|+.+| ..||.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 65554432 1111122 123445556667778999999999883 2 2 23577888888776 7788888777
Q ss_pred HHH
Q 005732 588 AAQ 590 (680)
Q Consensus 588 ~~~ 590 (680)
++.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.12 Score=48.35 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=73.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-IE-LDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~ 582 (680)
-..-|.+.|.+++|+.+|....... +.++.++..-..+|.+..++..|+.=.+..- .. .-...|.--+.+-...|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 3456788999999999998877532 2267777777788888888887776655541 11 0122333334444456888
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
.+|..-++.++++.|++. .|-..+.+.....|+.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHH
Confidence 888899999999999863 344444444444444433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=6.5 Score=37.54 Aligned_cols=81 Identities=6% Similarity=0.003 Sum_probs=38.2
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCCh----hHHHHHHHHHHhCCCCCCHhhHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKF----DESLSLVSTMHRSNVKLNETTFSTI 90 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~t~~~l 90 (680)
.+|..+....+.++...|..+-...+..-+..+|...-...+.++...|.. .++...+..+... .++...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 455555556666666666533222222222344555555555555555543 3455555555322 2344444444
Q ss_pred HHHHhcc
Q 005732 91 LSVCAQL 97 (680)
Q Consensus 91 l~~~~~~ 97 (680)
+.+++..
T Consensus 112 ~~aLG~~ 118 (280)
T PRK09687 112 INATGHR 118 (280)
T ss_pred HHHHhcc
Confidence 4444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.13 Score=32.68 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 600 ISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
|..+..++.+|.+.|++++|.++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999988644
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.13 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888999999999999888854
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.44 E-value=16 Score=41.10 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=70.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 518 (680)
.++.-.+.|-+.+|..++..-.+.--..|.+....+.....+++|.-.|+..=+ ..-.+.+|..+|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 334444455555555554322222223333344444555666666665554322 11235566677777777
Q ss_pred HHHHHHHHhcCCCCChh--HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 519 MKIFRSMKSYGVVPTLE--HYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
..+..++... -+.. +-..|+..+...++.-+|-++..+....|... +..+++...|++|.++....
T Consensus 985 l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 985 LSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhc
Confidence 7776665521 1111 11456666777777777777777764333221 22344455566666555444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.9 Score=41.18 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCC--HHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-I-ELD--AVVWGALLS 574 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~ 574 (680)
..-..+..++.+.|+.++|++.+++|.+.... ....+...|+.+|...+.+.++..++.+.. + -|. ...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33345666777889999999999999854322 345567789999999999999999988874 1 232 344555443
Q ss_pred HHHhcCC---------------HHHHHHHHHHHHcCCCC
Q 005732 575 ACWFWMN---------------MEVGERAAQKMFGLDKK 598 (680)
Q Consensus 575 ~~~~~g~---------------~~~a~~~~~~~~~~~p~ 598 (680)
.....++ ...|.+.+.++++.+|-
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3333332 23456788888887765
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.21 E-value=14 Score=39.54 Aligned_cols=275 Identities=10% Similarity=-0.015 Sum_probs=168.3
Q ss_pred hhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCCh
Q 005732 331 VDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISG-----YVQNNLHEKALQLYMTMRK-------LAIDRTR 398 (680)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~A~~~~~~m~~-------~~~~p~~ 398 (680)
...+.+.++...+.|. ...-..+..+ +....+.+.|+.+|+.+.. .| ..
T Consensus 228 ~~~a~~~~~~~a~~g~----------------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~ 288 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----------------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LP 288 (552)
T ss_pred hhHHHHHHHHHHhhcc----------------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 4567888888877662 2222222222 3456789999999999877 45 33
Q ss_pred hhHHHHHHHhcccC-----ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh-cCChHHHHHHHhcCCC-CCHHHHHHHH
Q 005732 399 STFSVLFHACSCLG-----SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR-CGSINDAQASFSSISS-PNVAAWTALM 471 (680)
Q Consensus 399 ~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~ 471 (680)
.....+..+|.+.. +.+.|..++....+.| .|+....-..+..... ..+...|.++|..... -....+-.+.
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la 367 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLA 367 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34555666665533 6677999999999888 4444333222222222 2457889999987764 3444443444
Q ss_pred HHHH----HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH---
Q 005732 472 NGYS----HHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL--- 544 (680)
Q Consensus 472 ~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--- 544 (680)
.+|. ...+.+.|..++++..+.| .|...--...+..+.. +.++.+.-.+..+...|.+.....-..+....
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEED 445 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccc
Confidence 3332 2347789999999999988 4443333333444444 77777777776666655443222221122111
Q ss_pred Hh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc-C-
Q 005732 545 GR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL-G- 614 (680)
Q Consensus 545 ~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g- 614 (680)
.. ..+.+.+...+.+...+-+......+...+.. ..+.+.|...|.++.... +.....++..+..- |
T Consensus 446 ~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~ 522 (552)
T KOG1550|consen 446 LFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGI 522 (552)
T ss_pred ccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCc
Confidence 11 22556677777777555566666666665543 346889999998887777 67788888887652 2
Q ss_pred -CchHHHHHHHHHhhCC
Q 005732 615 -KWGKKMDIRKRLTHLE 630 (680)
Q Consensus 615 -~~~~A~~~~~~~~~~~ 630 (680)
.+..|.+++++..+.+
T Consensus 523 ~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 523 KVLHLAKRYYDQASEED 539 (552)
T ss_pred chhHHHHHHHHHHHhcC
Confidence 2678888888877644
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.16 E-value=1 Score=41.29 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=70.2
Q ss_pred HHHHhcCC--CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 005732 453 QASFSSIS--SPNVAAWTALMNGYSH-----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG------------ 513 (680)
Q Consensus 453 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g------------ 513 (680)
+..|..+. +.|-.+|...+..+.. .+..+-....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 3566666666666543 3455666667788888888888888888888765432
Q ss_pred ----CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005732 514 ----LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL 550 (680)
Q Consensus 514 ----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (680)
+-+=++.++++|...|+.||..+-..|+.++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2344788999999999999999999999998887754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.61 Score=39.24 Aligned_cols=94 Identities=11% Similarity=-0.054 Sum_probs=53.5
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 536 HYTCVVDLL---GRSGHLHEAEEFIKDM-PIELDAVVW-GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 536 ~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+.+.|+... .+.++.+++..++..+ ...|..... ..-.+.+...|++.+|+++++.+.+..|..+..-..++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 344444433 3566777777777776 244543322 22233455677777777777777777776665556666666
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 005732 611 AVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~ 630 (680)
...|+. +-..+-+++.+.+
T Consensus 89 ~~~~D~-~Wr~~A~evle~~ 107 (160)
T PF09613_consen 89 YALGDP-SWRRYADEVLESG 107 (160)
T ss_pred HHcCCh-HHHHHHHHHHhcC
Confidence 655553 2344444455443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.61 Score=38.46 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=30.5
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 547 SGHLHEAEEFIKDM-PIELDAVVW-GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 547 ~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
.++.+++..+++.+ ...|+..-. ..-++.+...|++.+|.++++...+-.+..+-.-..++..+...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 45555555555554 123321111 1122233445555555555555555544444334444444444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.17 Score=29.89 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555556666666666666666666666653
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.2 Score=41.85 Aligned_cols=161 Identities=13% Similarity=-0.016 Sum_probs=118.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCChhHHHHHHHHHHhcCChH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSY---GVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
..+|+.-+|...++++.+. .+.|...+...-.+|.-.|+...-...++++... +++-....-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888888888988874 3446777888888999999999999999988843 22222333345566677899999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC----CchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 552 EAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP----ISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 552 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
+|++.-++. .+.| |...-.++...+.-.|+..++.++..+--..-... ...|.+.+-.+...+.++.|++++++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999987 4443 66777777777888999999999887753322221 23477888888889999999999987
Q ss_pred HhhCCCccCCc
Q 005732 626 LTHLEVKKDPG 636 (680)
Q Consensus 626 ~~~~~~~~~~~ 636 (680)
=.-+.+.++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 55444556555
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=5.2 Score=34.90 Aligned_cols=132 Identities=10% Similarity=-0.014 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFV--GVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVV 541 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 541 (680)
.|..++.+.. .+.+ +.....+++.....+....++. .+...+...|++++|...++.........+ ...--.|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444432 3333 5555566666543222222222 234466778888888888887764221111 11122456
Q ss_pred HHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 542 DLLGRSGHLHEAEEFIKDMPIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
......|.+++|++.++...-+. .+.....-+.++...|+-++|+..|+++++.++++
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 67778899999999988874111 23334445567888899999999999998887554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.54 E-value=22 Score=40.17 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=63.4
Q ss_pred CChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HhccCCHHHHHHHH
Q 005732 447 GSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA----CVRAGLVNEGMKIF 522 (680)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~----~~~~g~~~~A~~~~ 522 (680)
++++.|...+.++. ...|.-.+..--++|-+.+|+.+ .+|+...+.....+ +...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44555555444443 11222222223344555555444 35565555444433 34455666665555
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 523 RSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVV--WGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
+..=+ ...-+.+|..+|+|.+|+.+..++...-+... -..|..-+...++.-+|-.+....
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 44321 11234667777888888887777743333322 245555566666665555555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.37 E-value=8.1 Score=34.77 Aligned_cols=90 Identities=10% Similarity=0.089 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHh--cCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHH-----HHHHHHHHHHh-
Q 005732 513 GLVNEGMKIFRSMKS--YGVVPTL---EHYTCVVDLLGRSGHLHEAEEFIKDMP---IELDAV-----VWGALLSACWF- 578 (680)
Q Consensus 513 g~~~~A~~~~~~~~~--~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~-----~~~~l~~~~~~- 578 (680)
.+++.|+..++..-+ .|-..+. .++-.....-...+++.+|+++|++.. ...+.. -|..-...|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455555555555441 1112222 222333344456788999999998872 222222 12111222322
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCch
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
..|.-.+.+.+++-.+++|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 378888888899999999985444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.19 Score=29.57 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999987754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.10 E-value=20 Score=38.76 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=49.2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccc-hhhHHHHHHHhcCCHHH
Q 005732 224 VIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLN-ASNSLINGLISMGRIED 302 (680)
Q Consensus 224 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 302 (680)
+|.-+....++..--..++.+.+.|+. +...-..|+.+|.+.++.+.-.+..+........ -....+..+.+.+-.++
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHH
Confidence 333444444444444445555555533 3333444555555555555555554444311110 11333444444444444
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcC
Q 005732 303 AELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMP 342 (680)
Q Consensus 303 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 342 (680)
|.-+-.+... +......+ +-..+++++|.+.+..+.
T Consensus 482 a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 4443333322 12222222 233456666666666653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.23 Score=29.89 Aligned_cols=28 Identities=11% Similarity=-0.070 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
++..|+..|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888888999999888886543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.66 Score=41.45 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=67.4
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHH
Q 005732 543 LLGRSGHLHEAEEFIKDM-PIELDAV-VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKM 620 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (680)
.|....+++.|+..+.+. .+.|+.. .|..=+.++.+..+++.+..-.++++++.|+.....+.++..+.....+++|+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 344556677777766655 5677764 44555666777889999999999999999999888999999999999999999
Q ss_pred HHHHHHhh
Q 005732 621 DIRKRLTH 628 (680)
Q Consensus 621 ~~~~~~~~ 628 (680)
..+.+..+
T Consensus 99 ~~Lqra~s 106 (284)
T KOG4642|consen 99 KVLQRAYS 106 (284)
T ss_pred HHHHHHHH
Confidence 99988754
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.67 E-value=22 Score=38.21 Aligned_cols=170 Identities=11% Similarity=0.193 Sum_probs=95.4
Q ss_pred HHHhhcCCCHHHHHHHHhhcC--CC---ccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 260 IEFYCGCEAFDGAMRVYDRLE--NP---CLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
++.+.+.+.+++|++..+... .+ ........+..+...|++++|-...-.|...+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 556677788888888887766 22 1223456677777888888888888888777777777766666666654433
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCCh
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSL 414 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 414 (680)
..+ +.... ...+...|..++..+.. .+...-.++..+ .+++...-..++++.
T Consensus 443 a~~---lPt~~-------------~rL~p~vYemvLve~L~-~~~~~F~e~i~~-----Wp~~Lys~l~iisa~------ 494 (846)
T KOG2066|consen 443 APY---LPTGP-------------PRLKPLVYEMVLVEFLA-SDVKGFLELIKE-----WPGHLYSVLTIISAT------ 494 (846)
T ss_pred hcc---CCCCC-------------cccCchHHHHHHHHHHH-HHHHHHHHHHHh-----CChhhhhhhHHHhhc------
Confidence 222 11111 12456677777777766 222222222211 122222211222111
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVA 465 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (680)
-.++.+. .-+......|+..|...++++.|.+++-.+.+++..
T Consensus 495 ------~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 495 ------EPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred ------chHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 0111111 112223344888889999999999988888765543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.43 E-value=9.8 Score=33.80 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++|+.|+..+...|+.++|..+++-....+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456667777777777777777776655443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.19 Score=42.53 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=23.3
Q ss_pred HHHHHhhcCCChhHHHHhhccCC----CCChhhHHHHHHHHHcCCChhHHHHHHH
Q 005732 23 KAITECGRNGQLVTARNLFDQMP----IRTVVSWNTMLCGYSKWAKFDESLSLVS 73 (680)
Q Consensus 23 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 73 (680)
.+|..+.+++.+....++++.+. ..+....+.++..|++.+..+...+.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34445555555555554444432 1234445555555555544444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.30 E-value=1 Score=42.20 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+..++..+...|+.+.+...+++.+..+|-+...|..+..+|.+.|+...|++.++++.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555555555555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.25 E-value=10 Score=33.68 Aligned_cols=161 Identities=13% Similarity=0.075 Sum_probs=88.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
|.-+..||-+.--+...|+++.|.+.|+...+.+..-+-...+.-| ++--.|++.-|.+-+...-+.. +.|+. .++
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D-~~DPf--R~L 171 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD-PNDPF--RSL 171 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC-CCChH--HHH
Confidence 4557789989888999999999999999998754333333333322 2334678888877666665554 33332 222
Q ss_pred HH-HHHhcCChHHHHH-HHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHh
Q 005732 440 VD-MYSRCGSINDAQA-SFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-------AATFVGVLSACV 510 (680)
Q Consensus 440 ~~-~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-------~~~~~~ll~~~~ 510 (680)
-- .--+.-++.+|.. +.++..+.|..-|..-+-.|.- |+.. ...+++++..- -.-+ ..||-.|..-+.
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHh
Confidence 11 1112334555543 3344555555555554443322 1111 12233333331 1111 235566666667
Q ss_pred ccCCHHHHHHHHHHHHh
Q 005732 511 RAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~ 527 (680)
..|+.++|..+|+-...
T Consensus 249 ~~G~~~~A~~LfKLaia 265 (297)
T COG4785 249 SLGDLDEATALFKLAVA 265 (297)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 77777777777776664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.11 E-value=5.1 Score=35.10 Aligned_cols=93 Identities=18% Similarity=0.096 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCCh----hH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFVGVLSACVRAGLVNEGMKIFRSMKSY---GVVPTL----EH 536 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~~ 536 (680)
.+..+...|++.|+.+.|++.|.++.+....|. ...+..++......+++..+...+.++... +..++. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 445566666667777777777777666443333 233445556666666666666666655521 111111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
|.. -.+...+++.+|.+.|-+.
T Consensus 118 ~~g--L~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEG--LANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHH--HHHHHhchHHHHHHHHHcc
Confidence 111 1233456777777666655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.48 E-value=2 Score=40.29 Aligned_cols=79 Identities=14% Similarity=0.248 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH---
Q 005732 315 SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK--- 391 (680)
Q Consensus 315 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--- 391 (680)
..++..++..+...|+.+.+...++++...+ +-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 3456677788888888999999999988887 77899999999999999999999999998865
Q ss_pred --CCCCCChhhHHHHHHH
Q 005732 392 --LAIDRTRSTFSVLFHA 407 (680)
Q Consensus 392 --~~~~p~~~~~~~ll~~ 407 (680)
.|+.|...+.......
T Consensus 219 edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 219 EELGIDPAPELRALYEEI 236 (280)
T ss_pred hhcCCCccHHHHHHHHHH
Confidence 4666665554444333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.41 E-value=6.4 Score=37.80 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCC--HHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 481 SEAVLLFEIMLEQDIVPNA--ATFVGVLSACVRAGL--VNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
+.++.+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+.-..
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 4566777777777766542 223333332222222 346777888888888887777776555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.36 Score=28.41 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.37 E-value=10 Score=32.14 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=44.5
Q ss_pred hccCCHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-IELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
...++.+.+..++..+.-..+ .+...++. ...+.+.|+|.+|+.+|+++. ..|....-..|+..|....+-..=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHH
Confidence 345566666666665553211 11222222 234556677777777777762 33444444555555554443333444
Q ss_pred HHHHHHcCCCCC
Q 005732 588 AAQKMFGLDKKP 599 (680)
Q Consensus 588 ~~~~~~~~~p~~ 599 (680)
+-+++++..+++
T Consensus 99 ~A~evle~~~d~ 110 (160)
T PF09613_consen 99 YADEVLESGADP 110 (160)
T ss_pred HHHHHHhcCCCh
Confidence 455566665543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=23 Score=36.04 Aligned_cols=193 Identities=11% Similarity=0.010 Sum_probs=114.7
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLS 507 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 507 (680)
+.|.....+++..+....++.-.+.+-.++.. .+-..|..++.+|... ..++-..+|+++.+.. -|......-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 44445555666666666666666666665553 5566777778888777 5677778888887743 34333433333
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVP-----TLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIELDAVVWGALLSACWF 578 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 578 (680)
-+...++.+.+...|.++..+=++. -...|..|...- ..+.+....+..++ +..--...+..+..-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3444477777888887776432221 122343333211 33455555555544 222334445555566677
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh--------------------cCCchHHHHHHHHHh
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV--------------------LGKWGKKMDIRKRLT 627 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~~ 627 (680)
..++++|++++..+++.+..+..+...++.-+.. -.++.++..-|++..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 8888888888888888887776665555555544 345666666666654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.16 E-value=10 Score=32.58 Aligned_cols=134 Identities=7% Similarity=-0.035 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhc--CChhhHHHHhccCCCCCe
Q 005732 104 KQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQC--NLMSDAFDVFIKMPKKDV 181 (680)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~ 181 (680)
.+..+.+.+.+++|+...+..+++.+.+.|++.....+++.-.-+|.......+-.+... .-..-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 345566667889999999999999999999999999988865544433333322222111 11345556666554
Q ss_pred eeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh
Q 005732 182 VVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKC 247 (680)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 247 (680)
..+..++..+...|+ +-+|+++.+..... +......++.+..+.+|...--.++.-..+.
T Consensus 90 ~~~~~iievLL~~g~-vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQ-VLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhHHHHHHHHHhCCC-HHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 245667778888888 88888887665322 2333456677777777766666666655554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.54 Score=27.29 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 603 YVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+..++.++.+.|++++|.+.++++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555555555555555555444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.88 E-value=8.5 Score=32.81 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVP 497 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 497 (680)
..|.-+-.+.|++.+|.++|..+......|
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 344445556666666666666665533333
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.42 Score=26.14 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=18.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRK 624 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~ 624 (680)
.....++.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.76 E-value=1 Score=29.89 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
...+..++.+.|++++|.+..+.+++.+|++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34466678899999999999999999999985443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=89.74 E-value=3.3 Score=33.53 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=35.2
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 531 VPTLEHYTCVVDLLGRSGHL---HEAEEFIKDM-P-IEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
.++..+--.+..++.+..+. .+.+.++++. + -.| .......|.-++.+.|+++++.++++..++.+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 34444444455555554433 3344455544 1 222 123333444456666666666666666666666653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.42 Score=27.78 Aligned_cols=31 Identities=6% Similarity=-0.064 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+..++.++...|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456778889999999999999999999974
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.53 E-value=1 Score=37.98 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=27.2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHh
Q 005732 224 VIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYD 277 (680)
Q Consensus 224 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (680)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555544434445555555555555555555555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.22 E-value=13 Score=31.75 Aligned_cols=131 Identities=10% Similarity=0.094 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-HHHHH
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA-TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLE-HYTCV 540 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 540 (680)
....|..-+. +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444443 356778899999999988876542211 12223334567888999999999888544444332 22222
Q ss_pred --HHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 541 --VDLLGRSGHLHEAEEFIKDMP---IELDAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 541 --~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
...+...|.+++...-++-+. .+.....-..|.-+-.+.|++..|...|.++..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 233567888998888888773 222345567777788899999999999998877
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.88 Score=28.21 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+++.+...+...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444455555555555555555555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=6.2 Score=39.33 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=79.4
Q ss_pred ccCCHHHHHHH-HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 511 RAGLVNEGMKI-FRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 511 ~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
..|+.-.|-+- +..+....-.|+.... ........|+++.+...+.... +.....+...++......|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34555554443 3333333333333322 2344566777887777777662 33455666777777777888888888
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 005732 588 AAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGC 637 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 637 (680)
..+-++..+-++++.....+......|-++++.-.|+++.....+.+.|+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 88888877777766666555566667778888888888877666666663
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.66 E-value=23 Score=33.87 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=14.5
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005732 575 ACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 575 ~~~~~g~~~~a~~~~~~~~ 593 (680)
.+.+.++++.|.+.|+-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3557889999999888654
|
It is also involved in sporulation []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.64 E-value=71 Score=39.47 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=54.4
Q ss_pred HHHhccCChhhHHHHHHHH----HHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhh-cCCCccchhhHHHHHHHhcCCH
Q 005732 226 RACARLGAFCEGKVVHGLL----IKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDR-LENPCLNASNSLINGLISMGRI 300 (680)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 300 (680)
.+-.+.+.+..|...++.- .+. ......+-.+...|..-+++|....+... ...++ . ..-+......|++
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l-~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--L-YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--H-HHHHHHHHhhccH
Confidence 3444555555555555542 111 11122333344466666666655555442 11111 1 2333444455666
Q ss_pred HHHHHHHHHhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCc
Q 005732 301 EDAELIFNRLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPH 343 (680)
Q Consensus 301 ~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 343 (680)
..|...|+.+.+ |+ ..+++-++......|.++...-..+....
T Consensus 1466 ~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~ 1511 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII 1511 (2382)
T ss_pred HHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhh
Confidence 666666666655 33 44566666655556666655554444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.47 E-value=20 Score=32.97 Aligned_cols=247 Identities=15% Similarity=0.161 Sum_probs=141.8
Q ss_pred cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH---CCCC--CChhhHH
Q 005732 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK---LAID--RTRSTFS 402 (680)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~--p~~~~~~ 402 (680)
....++|+.-|.+..+...- ...-.-.+...+|..+.+.+++++.++.|.++.. +.+. -+....+
T Consensus 40 e~~p~~Al~sF~kVlelEgE----------KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN 109 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGE----------KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN 109 (440)
T ss_pred ccCHHHHHHHHHHHHhcccc----------cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34677777777776653210 0012233455678889999999999999998853 2222 2445677
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhc-----CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---------------C
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKT-----PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---------------P 462 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------~ 462 (680)
.++...+.+.+.+--..+++.-.+. +-..--.+-..|...|...|++.+..++++++.. .
T Consensus 110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ 189 (440)
T KOG1464|consen 110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ 189 (440)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence 7777777777766665555543321 1112222334566777777888887777776542 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----hccCCHHHHHHHH-HHHH---hcCCCC
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-DIVPNAATFVGVLSAC-----VRAGLVNEGMKIF-RSMK---SYGVVP 532 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~-~~~~---~~~~~~ 532 (680)
-...|..-|..|...++-..-..++++...- ..-|.+... .+++-| .+.|.+++|..-| +... +.|-+-
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR 268 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 268 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence 2356777788888888888888888877652 223444433 344544 4578888876544 4444 334332
Q ss_pred ChhH--HHHHHHHHHhcCChHHHHHHHH--hC-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 533 TLEH--YTCVVDLLGRSGHLHEAEEFIK--DM-P--IELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 533 ~~~~--~~~l~~~~~~~g~~~~A~~~~~--~~-~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
...+ |-.|...+.+.|-- -|+ +. + ..|.......++.+|. .+++.+-++++..
T Consensus 269 RttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 269 RTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred hhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 2222 34455555555411 111 11 2 3444555677777764 4566655555444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.39 E-value=35 Score=35.57 Aligned_cols=138 Identities=8% Similarity=0.033 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHH
Q 005732 48 TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTI-LSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLL 126 (680)
Q Consensus 48 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (680)
+...|.++|.---.....+.+..++..+... -|.-+.|-.- ...=.+.|..+.+..+|+..+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556776666555555556666677777644 4555443322 22223456677777777776643 344555554444
Q ss_pred HHH-HcCCChHHHHHHHhhhcCC------chhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHH
Q 005732 127 FFY-ANCFEIEEAKRVFDELHED------NELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLI 188 (680)
Q Consensus 127 ~~~-~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll 188 (680)
..+ ...|+.+.....|+....- ....|...|..-..++++.....+++++.+-....|+..-
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f 189 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHF 189 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHH
Confidence 333 3446777777777665431 3344666666666677777777777766654444444333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.14 E-value=25 Score=33.61 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=9.3
Q ss_pred CChhHHHHHHHHHhccCC
Q 005732 313 ANSISYNSMIKGYAVYGQ 330 (680)
Q Consensus 313 ~~~~~~~~ll~~~~~~~~ 330 (680)
+|.......+.++...|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 455555555555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.45 E-value=8.2 Score=37.07 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhCCCCcchhhhhHHHHHHc--C----CChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccC
Q 005732 103 GKQIHCLVLKSGYECFEFVGSGLLFFYAN--C----FEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKM 176 (680)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 176 (680)
...+++.+.+.|+..+.+++-+-...... . -....|..+++.|.+..++.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL------------------------ 136 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL------------------------ 136 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc------------------------
Confidence 44456666666666555554442222222 1 12445666677765433110
Q ss_pred CCCCeeeHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCCCCCc-chHHHHHHHHhccCC--hhhHHHHHHHHHHhCCCCC
Q 005732 177 PKKDVVVWTKLISGYAKSVDG-CEKALKLFRWMRESGENMPNE-YTFDSVIRACARLGA--FCEGKVVHGLLIKCGFEFD 252 (680)
Q Consensus 177 ~~~~~~~~~~ll~~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 252 (680)
-.++-.++..++..-...-+. .+.+..+|+.+.+.|...-|. ...+.++..+..... ...+..+++.+.+.|+++.
T Consensus 137 Ts~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 137 TSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred cCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 123445555555442111110 366778888888877765333 333444444333322 3477888888999998887
Q ss_pred chHHHHHHH
Q 005732 253 ESIGGALIE 261 (680)
Q Consensus 253 ~~~~~~li~ 261 (680)
...|..+.-
T Consensus 217 ~~~yp~lGl 225 (297)
T PF13170_consen 217 YMHYPTLGL 225 (297)
T ss_pred cccccHHHH
Confidence 777665543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.35 E-value=22 Score=32.15 Aligned_cols=91 Identities=4% Similarity=-0.095 Sum_probs=49.1
Q ss_pred HHHHHHhc-CChHHHHHHHHhCC-----CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch------HH
Q 005732 540 VVDLLGRS-GHLHEAEEFIKDMP-----IELDAV---VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA------YV 604 (680)
Q Consensus 540 l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~------~~ 604 (680)
+...|... .+++.|+..++..+ -+.+.. .+..+...-...+++.+|+.+|++.-...-+++-. |.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444443 56667777776652 111222 22222223345899999999999987766555322 22
Q ss_pred -HHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 605 -ILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 605 -~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.-+-.+...++.-.+.+.+++..+..
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 22222333355555666666665543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.35 E-value=2.5 Score=39.52 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHH
Q 005732 64 KFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVL 111 (680)
Q Consensus 64 ~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 111 (680)
+++.++.++..-...|+-||..+++.+|..+.+.++...|.++..+|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344455554444445555555555555555555555444444444443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.6 Score=39.28 Aligned_cols=62 Identities=6% Similarity=-0.085 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
+.....++...|++-++++....++...|.+..+|+..+.+....=+.++|.+-+.++++..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 44445566678999999999999999999999999999999988888889998888887654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=87.25 E-value=34 Score=34.14 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=27.7
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhC
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG-RSGHLHEAEEFIKDM 560 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 560 (680)
.+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ ++++++--+++.+..
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44555556666666655555544445555555555443 445555555555443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.71 E-value=2 Score=43.72 Aligned_cols=116 Identities=12% Similarity=-0.002 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 005732 496 VPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALL 573 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~ 573 (680)
.|-...++...-.+...|+...|...+.......+.-.-...-.|...+.+.|...+|-.++.+. . ....+.++..++
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 33333333333334567888899988888774333323334445667777888888888877664 2 234567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
.++....+++.|++.++++++++|+.+..-..|..+-+
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 89999999999999999999999999887766655543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.60 E-value=1.3 Score=25.96 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998764
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.28 E-value=53 Score=35.47 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=97.9
Q ss_pred HhccCChHHHHHHHHHHHHhCCCC---cchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHH
Q 005732 94 CAQLNSLIDGKQIHCLVLKSGYEC---FEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAF 170 (680)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 170 (680)
+...+.+++|..+.+... |..| ...+....+..+.-.|++++|-.....|...+..-|...+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334445555544433322 2233 34556777888888899999999999998888888988888888888887766
Q ss_pred HHhccCCC-CCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 005732 171 DVFIKMPK-KDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGF 249 (680)
Q Consensus 171 ~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 249 (680)
.++-.-+. -++..|..++..++.. + ..-|.+.++.- +...|..+...-+...+ ..+.
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~~-~-----~~~F~e~i~~W----p~~Lys~l~iisa~~~q----------~~q~-- 501 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLAS-D-----VKGFLELIKEW----PGHLYSVLTIISATEPQ----------IKQN-- 501 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHHH-H-----HHHHHHHHHhC----ChhhhhhhHHHhhcchH----------HHhh--
Confidence 66543332 3667788888888762 2 23344444332 22233322221111111 1111
Q ss_pred CCCchHHHHHHHHhhcCCCHHHHHHHHhhcC
Q 005732 250 EFDESIGGALIEFYCGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (680)
.-+......|+..|...+++..|...+-...
T Consensus 502 Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 502 SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 1122233348888888999999988887665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.22 E-value=6.3 Score=34.54 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005732 50 VSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNE--TTFSTILSVCAQLNSLIDGKQIHCLVLKS 113 (680)
Q Consensus 50 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (680)
..+..+...|++.|+.+.|++.|.++++....+.. ..+..+|+.+...+++..+..........
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 36777888888888888888888888876554443 35667777777778887777776666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.85 E-value=1.3 Score=27.48 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.++..++.+|...|++++|.+++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999998763
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.81 E-value=1.6 Score=24.59 Aligned_cols=29 Identities=17% Similarity=-0.007 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
+..+...+...|+++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.69 E-value=8 Score=33.38 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=40.1
Q ss_pred CCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 562 IELD-AVVWGALLSACWFWM-----------NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 562 ~~p~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+.|+ ...+..++.++...+ .+++|...|+++...+|++ ..|..-.... ..|-++..++.++
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHH
Confidence 5665 566667776664332 4677888888999999998 5555444443 3577888888777
Q ss_pred CCccC
Q 005732 630 EVKKD 634 (680)
Q Consensus 630 ~~~~~ 634 (680)
+....
T Consensus 137 ~~~~q 141 (186)
T PF06552_consen 137 GLGQQ 141 (186)
T ss_dssp SS---
T ss_pred Hhhhh
Confidence 65443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.45 E-value=6.2 Score=35.81 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHcCCCC--C----CchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 566 AVVWGALLSACWFWMNME-------VGERAAQKMFGLDKK--P----ISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
...+.-+.+.|...|+.+ .|...|+++.+.... . ....+.+|.+..+.|++++|.+.+.++...+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334555666666667644 444555555554332 1 3457788999999999999999999987654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.22 E-value=4.3 Score=26.97 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.++.++.++.+.|++++|.+..+.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4678889999999999999999999875
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.07 E-value=16 Score=32.03 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=49.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
.++.+.+.++.|++-..+. .+.|+ ...+.--..+|.+...++.|+.-|+++++.+|....+-...+++--......++
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 4455566666666555444 33332 111222233566777889999999999999998765555555443332222222
Q ss_pred --HHHHHHHhhCC
Q 005732 620 --MDIRKRLTHLE 630 (680)
Q Consensus 620 --~~~~~~~~~~~ 630 (680)
.+++.++++.|
T Consensus 222 mKee~m~kLKdlG 234 (271)
T KOG4234|consen 222 MKEEMMEKLKDLG 234 (271)
T ss_pred HHHHHHHHHHHhh
Confidence 23455555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.90 E-value=0.75 Score=27.17 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=21.1
Q ss_pred hhhhcccCccchhhHHHHHhhcCCChhHHH
Q 005732 9 QTLMTQETLIVSTNKAITECGRNGQLVTAR 38 (680)
Q Consensus 9 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 38 (680)
+.+...|-|+.+|+.+...|...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344556667777777777777777777775
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.66 E-value=7.4 Score=29.60 Aligned_cols=52 Identities=13% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 005732 158 VGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESG 212 (680)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 212 (680)
..++..|++++|..+.+.+.-||...|-+|-..-. |- ......-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rl--Gl-~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRL--GL-GSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhh--cc-HHHHHHHHHHHHhCC
Confidence 35677888888888888888888888877765543 33 345555566666655
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.58 E-value=26 Score=36.44 Aligned_cols=149 Identities=14% Similarity=0.084 Sum_probs=76.0
Q ss_pred hcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005732 445 RCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRS 524 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 524 (680)
-.|+++.|..++-.+.++ ..+.+++.+-++|-.++|+++ .+|..-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 346666666655555422 233444445555655555543 2332211 1122345666666666554
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 525 MKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 525 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+....+-..+.+.+..+
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N----- 725 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN----- 725 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----
Confidence 33 34456677777777777777777776652 13344444555555554444444444444333
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 005732 605 ILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~ 625 (680)
.-..+|...|+++++.+++.+
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 122234455666666665543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.45 E-value=67 Score=35.00 Aligned_cols=176 Identities=15% Similarity=0.044 Sum_probs=92.4
Q ss_pred HHHHHHHHHH-hCCCCc--chhhhhHHHHHH-cCCChHHHHHHHhhhcC---Cchh------HHHHHHHHHHhcCChhhH
Q 005732 103 GKQIHCLVLK-SGYECF--EFVGSGLLFFYA-NCFEIEEAKRVFDELHE---DNEL------LWSLMLVGYVQCNLMSDA 169 (680)
Q Consensus 103 a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~---~~~~------~~~~l~~~~~~~~~~~~A 169 (680)
|.++++.+.+ ..++|. ..++-.+...+. ...+.+.|+..+++... ++.. ....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555666653 233332 244455566555 56778888888876531 1111 1223344455544444 7
Q ss_pred HHHhccCCC----CCe----eeHHHH-HHHHHhCCCChHHHHHHHHHHHHcCCCC--CCcchHHHHHHHHh--ccCChhh
Q 005732 170 FDVFIKMPK----KDV----VVWTKL-ISGYAKSVDGCEKALKLFRWMRESGENM--PNEYTFDSVIRACA--RLGAFCE 236 (680)
Q Consensus 170 ~~~~~~~~~----~~~----~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~~~~~--p~~~~~~~ll~~~~--~~~~~~~ 236 (680)
...+++... ... ..|..+ +..+...++ +..|++.++.+....... |-...+..++.+.. +.+..+.
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d-~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKD-YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 777765431 111 223333 223333356 788999998886543211 13444445555544 4455566
Q ss_pred HHHHHHHHHHhCC---------CCCchHHHHHHHHhh--cCCCHHHHHHHHhhcC
Q 005732 237 GKVVHGLLIKCGF---------EFDESIGGALIEFYC--GCEAFDGAMRVYDRLE 280 (680)
Q Consensus 237 a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 280 (680)
+.+.++.+..... .|...++..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666643322 234556666666544 5777777777766663
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.96 E-value=69 Score=34.80 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=15.0
Q ss_pred HHhcCChHHHHHHHHhCCCCC
Q 005732 544 LGRSGHLHEAEEFIKDMPIEL 564 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~p 564 (680)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457889999999999987666
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.45 E-value=52 Score=32.95 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=49.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhccC---ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcch
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTEA---NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIIS 348 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 348 (680)
..++.-|...|+..+|...++++.-| ....+..++.+.-+.++-...+.+++..-+.|.++
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT 576 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLIT 576 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCcee
Confidence 56788899999999999999988764 35578889999999998888888888887777543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.34 E-value=11 Score=33.38 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH---hcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 481 SEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK---SYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
+.|.+.|-++...+.--++..... +..|....+.++++.++.+.. ..+-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556666666655543333333333 333444566777777776665 222355666666666666666666655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.22 E-value=2.4 Score=36.43 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC----chHHHHHHHHHh
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK----WGKKMDIRKRLT 627 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 627 (680)
-+++|+.-|++++.++|+...++..++.+|...+. ..+|..+|++..
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 35677778889999999999999999999987653 345555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.02 E-value=0.89 Score=43.04 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 575 ACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 575 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.+.+.+....|++-+..+++++|+.+.-|-..+.+..-.|+|++|.+.+....+.+
T Consensus 157 v~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 157 VFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred eeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 33344444444444444444444444444444444444444444444444444433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=82.72 E-value=3.1 Score=31.51 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=19.8
Q ss_pred HHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 589 AQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+++.++.+|++......++..+...|++++|++.+-++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.65 E-value=4.6 Score=37.90 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 479 LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
++++++.++..=++-|+-||..+++.++..+.+.+++.+|..+...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 456677776666677777777777777777777777777777766666
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.52 E-value=9.5 Score=29.24 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
+..+-+..+....+.|++......+.+|.+.+++..|.++|+-++ +.|.. ...|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHH
Confidence 445555666666788888888888888888888888888888888 54433 22565544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.48 E-value=28 Score=29.12 Aligned_cols=47 Identities=23% Similarity=0.164 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHhhcC--CCccch-hhHHHHHHHhcCCHHHHHHHHHHhcc
Q 005732 266 CEAFDGAMRVYDRLE--NPCLNA-SNSLINGLISMGRIEDAELIFNRLTE 312 (680)
Q Consensus 266 ~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 312 (680)
.++.+++..+++.+. +|...- -..-.-.++..|++++|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 455555555555544 222222 11122233444555555555555444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.39 E-value=2.5 Score=26.77 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 604 VILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999988654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.06 E-value=7.5 Score=36.97 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=59.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc--
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS-- 547 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 547 (680)
.+-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-.......+ ...+.+|.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 4568999999999999998887 567 78888888889999988888887777666432 2334555554
Q ss_pred -----CChHHHHHHHHhC-CCCCC
Q 005732 548 -----GHLHEAEEFIKDM-PIELD 565 (680)
Q Consensus 548 -----g~~~~A~~~~~~~-~~~p~ 565 (680)
|+..+|.+=++.. ...|+
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcc
Confidence 4555555544443 45665
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.94 E-value=5.6 Score=36.99 Aligned_cols=60 Identities=17% Similarity=0.020 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+......|...|.+.+|.++.++++.++|-+...+..+...|...|+--+|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444556788899999999999999999999999999999999999998888888887764
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.56 E-value=12 Score=28.41 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
++.+-++.+....+.|++......+.+|.+.+++..|.++|+-++ +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 445555666666778888888888888888888888888888777 4432 333454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.34 E-value=5.7 Score=35.25 Aligned_cols=72 Identities=17% Similarity=0.023 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSN 608 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 608 (680)
.+.-+..+.+.+.+.+|+...++- +-+| |...-..++..++-.|++++|..-++-+-++.|+.. +.|.+++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345567788889999999887654 5455 566667788888999999999999999999998863 23444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.45 E-value=93 Score=33.85 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHhcCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---cC
Q 005732 440 VDMYSRCGSINDAQASFSS--ISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD-IVPNAATFVGVLSACVR---AG 513 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~---~g 513 (680)
...+.-+|+++.|++.+-+ ....+.+.+...+.-|.-.+-..... ..+.... -.|....+..|+..|.+ ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 3445567777877777766 22234444333333221111111100 2222110 01112456666666654 56
Q ss_pred CHHHHHHHHHHHHh
Q 005732 514 LVNEGMKIFRSMKS 527 (680)
Q Consensus 514 ~~~~A~~~~~~~~~ 527 (680)
++.+|.+++--+..
T Consensus 342 d~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 342 DPREALQYLYLICL 355 (613)
T ss_dssp -HHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHH
Confidence 77778877777664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.20 E-value=66 Score=31.97 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDMPIEL------DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
..+|..++..+.+.|+++.|...+..+.... .+.+...-+..+...|+..+|...++..++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666777777777777666652111 334444444555566777777776666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.18 E-value=2.1 Score=23.29 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=15.6
Q ss_pred hhhHHHHHhhcCCChhHHHHhhc
Q 005732 20 STNKAITECGRNGQLVTARNLFD 42 (680)
Q Consensus 20 ~~~~li~~~~~~g~~~~A~~~~~ 42 (680)
+...+..++...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456677777777777777665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.7 bits (135), Expect = 2e-08
Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 8/137 (5%)
Query: 438 SLVDMYSRCGSINDAQASFSSISS-------PNVAAWTALMNGYSHHGLGSEAVLLFEIM 490
+ + A + + A+M G++ G E V + ++
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 491 LEQDIVPNAATFVGVLSACVRAGLVNEGM-KIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549
+ + P+ ++ L R + + M G+ ++ R+
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 550 LHEAEEFIKDMPIELDA 566
L + +
Sbjct: 252 LKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 3e-07
Identities = 37/217 (17%), Positives = 59/217 (27%), Gaps = 11/217 (5%)
Query: 461 SPNVAAWTALMNGYSHHGLGSEAVLLFEI---MLEQDIVPNAATFVGVLSACVRAGLVNE 517
S A A L + ++ + + V+ R G E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 518 GMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA-EEFIKDMPIELDAVVWGALLSAC 576
+ + +K G+ P L Y + +GR E ++ M + + AL +A
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS--QEGLKLQALFTAV 241
Query: 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPG 636
A N +L K K
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQ 301
Query: 637 CSW-----IELNSRVHAFSVEDRNNPNCNVIYATLEH 668
C + +EL SRV SVE P+ V +A
Sbjct: 302 CLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTL 338
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 2e-06
Identities = 12/175 (6%), Positives = 53/175 (30%), Gaps = 22/175 (12%)
Query: 288 NSLINGLISMGRIEDAELIFNRLTE-------ANSISYNSMIKGYAVYGQVDDSKRLFEK 340
+ + ++ A + YN+++ G+A G + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 341 MPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRST 400
+ + + +++ + + + + ++ + + ++
Sbjct: 191 VKDAGL-------------TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 401 FSVLFHACSCLGSLQQGQ--LLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQ 453
F+ + + ++ + + + V L D+Y++ G ++ +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 7e-05
Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 28 CGRNGQLVTARNLFDQM-------PIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNV 80
C QL A +L + T+ +N ++ G+++ F E + ++ + + +
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196
Query: 81 KLNETTFSTILSVCA 95
+ +++ L
Sbjct: 197 TPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 1e-04
Identities = 17/224 (7%), Positives = 68/224 (30%), Gaps = 21/224 (9%)
Query: 156 MLVGYVQCNLMSDAFDVFIKMPKK-------DVVVWTKLISGYAKSVDGCEKALKLFRWM 208
+ + + A + + + + ++ ++ G+A+ ++ + + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMV 191
Query: 209 RESGENMPNEYTFDSVIRACARLGAFCEG-KVVHGLLIKCGFEFDESIGGALIEFYCGCE 267
+++G P+ ++ + ++ R + + + G + L+
Sbjct: 192 KDAGLT-PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 268 AFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAV 327
+V P + ++L+ + + +SY +
Sbjct: 251 VLKAVHKVKPTFSLP-----------PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
Query: 328 YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMIS 371
+ + + E ++S+ E++ T ++
Sbjct: 300 LQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 73/538 (13%), Positives = 158/538 (29%), Gaps = 132/538 (24%)
Query: 1 MKLYATQSQTLMTQETLIVSTNKAITECGRNGQLVTARN-LFDQMPIRTVVSWNTML-CG 58
++Y Q L + N ++ R + R L + P + V+ + +L G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYN--VS---RLQPYLKLRQALLELRPAKNVLI-DGVLGSG 162
Query: 59 YSKWAKFDESLSLVSTMHRSNVKLNETTFSTI-LSV--CAQLNSLIDGKQIHCLVLKSGY 115
K + + S + F L++ C ++++ Q + +
Sbjct: 163 --KT-------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 116 ECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIK 175
S I + L + L+++ VQ +AF++ K
Sbjct: 214 T------SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 176 --MPKKDVVVWTKLISGYAKSV------DGCEK--ALKLF-RWMRESGENMPNEYTFDSV 224
+ + V L + + L +++ +++P E
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE------ 321
Query: 225 IRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCL 284
+ + SI I DG +D ++
Sbjct: 322 --VLT----------TNPRRL--------SIIAESIR--------DGLAT-WDNWKHVNC 352
Query: 285 NASNSLINGLISMGRIEDAEL--------IFNRLTEANSISYN--SMIKGYAVYGQVDD- 333
+ ++I S+ +E AE +F + I S+I + V
Sbjct: 353 DKLTTIIE--SSLNVLEPAEYRKMFDRLSVFP---PSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 334 -----SKRLFEKMPHRSIISLNTM-------ISVIPEMERNPVT---------WNSM--- 369
L EK P S IS+ ++ + + R+ V + +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 370 -ISGYVQNNL--HEKAL---QLYMTMRKLAID------RTRSTFSVLFHACSCLGSLQQG 417
+ Y +++ H K + + R + +D + R + + S L +LQQ
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 418 QLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYS 475
+ ++ + V ++D + N + ++ + ALM
Sbjct: 528 KFYKPYICDNDPKYERLVNA-ILDFLPKIEE-NLICSKYTDLLR------IALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 7e-04
Identities = 64/404 (15%), Positives = 130/404 (32%), Gaps = 128/404 (31%)
Query: 34 LVTARN--LFDQMP--IRTVVSWNTMLCGYSKWAKFDESLSLVST-MHRSNVKLNETTFS 88
L+T R + D + T +S + + DE SL+ + L +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLLLKYLDCRPQDLPREVLT 324
Query: 89 T---ILSVCAQLNSLIDG-------KQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEA 138
T LS+ A+ + DG K ++C L + S L N E E
Sbjct: 325 TNPRRLSIIAES--IRDGLATWDNWKHVNCDKLT------TIIESSL-----NVLEPAEY 371
Query: 139 KRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVF---IKMPKKD-VVVWTKLISGYAKS 194
+++FD L VF +P ++W +I
Sbjct: 372 RKMFDRL-------------------------SVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 195 -VDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLL--IKCGFEF 251
V+ K + + P E T + + +K E
Sbjct: 407 VVNKLHKYSLVEKQ--------PKESTI-----------------SIPSIYLELKVKLEN 441
Query: 252 DESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLING--LISMGRIEDAELIFNR 309
+ ++ ++++ Y + FD D + S I G L ++ E L F
Sbjct: 442 EYALHRSIVDHYNIPKTFDS----DDLIPPYLDQYFYSHI-GHHLKNIEHPERMTL-FRM 495
Query: 310 L----------TEANSISYNSM---------IKGYAVYGQVDDSKRLFEKMPHRSIISLN 350
+ +S ++N+ +K Y Y + D+ +E++ +N
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERL-------VN 546
Query: 351 TMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLY-MTMRKLA 393
++ +P++E N + S + ++ L + ++ +++
Sbjct: 547 AILDFLPKIEENLI--CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 680 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.08 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.99 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.72 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.68 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.51 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.51 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.5 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.47 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.43 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.43 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.42 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.42 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.36 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.36 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.35 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.32 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.28 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.22 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.22 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.16 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.15 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.11 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.11 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.09 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.03 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.02 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.94 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.93 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.93 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.87 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.63 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.63 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.59 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.58 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.53 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.43 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.41 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.14 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.12 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.09 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.84 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.57 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.43 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.29 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.28 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.21 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.09 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.93 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.63 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.6 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.58 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.82 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.39 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.83 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.6 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.34 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.27 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.46 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.38 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.01 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.89 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.09 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.37 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.16 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 84.95 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.1 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 83.92 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.76 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.66 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.43 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.15 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.8 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.61 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 81.82 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.11 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=359.57 Aligned_cols=517 Identities=8% Similarity=-0.045 Sum_probs=324.0
Q ss_pred hhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHH
Q 005732 28 CGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIH 107 (680)
Q Consensus 28 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~ 107 (680)
+.+.|.+..+...|..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44556667777777777777778888888888888888888888888774 3567777777777777777777777777
Q ss_pred HHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHH
Q 005732 108 CLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKL 187 (680)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 187 (680)
+.+... +++..+++.++.+|.+.|++++|.++|+++...+.. ..++.+.+.. +.-...+..+|+.+
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ-------DGGIKLEASMCYLR 206 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-------CSSCCHHHHHHHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc-------ccccchhHHHHHHH
Confidence 766432 556667777777777777777777777753322100 0001011110 01112356788888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhH--HHH-HHHHHHhCCCCCchHHHHHHHHhh
Q 005732 188 ISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEG--KVV-HGLLIKCGFEFDESIGGALIEFYC 264 (680)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~li~~~~ 264 (680)
+..+.+.|+ +++|.++|++|.+.+.. +...+..+...+...+..+.+ ..+ +..+...+..+...+++.++..|.
T Consensus 207 ~~~~~~~g~-~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (597)
T 2xpi_A 207 GQVYTNLSN-FDRAKECYKEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283 (597)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence 899999888 89999999998876532 445555555444333222211 111 344444444445556666677777
Q ss_pred cCCCHHHHHHHHhhcC--CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcC
Q 005732 265 GCEAFDGAMRVYDRLE--NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMP 342 (680)
Q Consensus 265 ~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 342 (680)
+.|++++|.++|+++. +++...++.++.+|.+.|++++|..+|+++ .
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------------------~ 332 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI-------------------------------L 332 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------H
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------------------H
Confidence 7777777777777766 244444455555555555555555555544 4
Q ss_pred cCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 343 HRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
+.+ +.+..+++.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|..+|+
T Consensus 333 ~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 333 EID--------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHC--------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcC--------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333 3344445555555555555555555555554321 2234444445555555555555555555
Q ss_pred HHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005732 423 HLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA 499 (680)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 499 (680)
.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+.. ..+.
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 554433 3445566666666666666666666666543 2456677778888888888888888888887743 2357
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSY----GVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGA 571 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ 571 (680)
.+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 78888888888888888888888888754 55666 678888888888888888888888876 23 347888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
++.+|...|++++|...++++++++|+++.++..++.+|.
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999888888887764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=337.05 Aligned_cols=479 Identities=11% Similarity=0.015 Sum_probs=380.6
Q ss_pred HHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCC--CCCeeeHHHHHHHHHhCCCChHHHHHHHH
Q 005732 129 YANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMP--KKDVVVWTKLISGYAKSVDGCEKALKLFR 206 (680)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 206 (680)
+...|....+...+..+..++...|+.++..+.+.|++++|+.+|+++. .|+..++..++..+.+.|+ +++|..+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~ 141 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGD-YARAKCLLT 141 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCc-HHHHHHHHH
Confidence 4566777777788887777778888888888888888888888888775 4666778888888888888 888888888
Q ss_pred HHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHh---------------CCCCCchHHHHHHHHhhcCCCHHH
Q 005732 207 WMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKC---------------GFEFDESIGGALIEFYCGCEAFDG 271 (680)
Q Consensus 207 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~ 271 (680)
++... |++..+++.++.++.+.|++++|..+++.+... +.+.+..+++.++.+|.+.|++++
T Consensus 142 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 142 KEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 77543 347788888888888888888888888742211 123346778888888888888888
Q ss_pred HHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHH---HHHhcc----CChhHHHHHHHHHhccCChhhHHHHHhhc
Q 005732 272 AMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELI---FNRLTE----ANSISYNSMIKGYAVYGQVDDSKRLFEKM 341 (680)
Q Consensus 272 A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 341 (680)
|.++|+++. +.+...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 888888876 44444444444433333222221110 222222 23345666678888999999999999999
Q ss_pred CcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHH
Q 005732 342 PHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLH 421 (680)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 421 (680)
.+. +++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++
T Consensus 299 ~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
T 2xpi_A 299 NGL---------------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLIS 362 (597)
T ss_dssp TTG---------------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcC---------------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 874 4789999999999999999999999999999865 347788999999999999999999999
Q ss_pred HHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005732 422 AHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN 498 (680)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 498 (680)
+.+.+.. +.+..++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+
T Consensus 363 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 440 (597)
T 2xpi_A 363 NDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGT 440 (597)
T ss_dssp HHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTC
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 9999765 6788999999999999999999999999875 3568899999999999999999999999999864 336
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIELD--AVVW 569 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~ 569 (680)
..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 8899999999999999999999999999764 347889999999999999999999999987 44777 7899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..++.+|.+.|++++|+..++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-27 Score=238.88 Aligned_cols=367 Identities=12% Similarity=0.066 Sum_probs=257.7
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHH
Q 005732 229 ARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAEL 305 (680)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 305 (680)
.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... |.+...+..++.++.+.|++++|..
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 33444444444444443332 1122333333344444444444444444333 3333344445555555555555555
Q ss_pred HHHHhcc--CC-hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHH
Q 005732 306 IFNRLTE--AN-SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKA 382 (680)
Q Consensus 306 ~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 382 (680)
.|+++.. |+ ..+|..+..++.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------------PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHccCHHHH
Confidence 5555444 32 3356666666666666666666666666544 44555666667777777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 005732 383 LQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS- 461 (680)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (680)
.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777776642 2234566677777777777777777777777665 55566777788888888888888888876652
Q ss_pred --CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHH
Q 005732 462 --PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYT 538 (680)
Q Consensus 462 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (680)
.+..++..+..++...|++++|+..|+++.+. .| +..++..+...+.+.|++++|.+.++++.+.. +.+..++.
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 45778888999999999999999999999984 45 46788889999999999999999999998654 45788899
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
.+...+.+.|++++|.+.++++ ...| +..++..++..+...|++++|...++++++..|+.+.++..++.++...|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999987 4445 588899999999999999999999999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=234.14 Aligned_cols=351 Identities=16% Similarity=0.106 Sum_probs=312.4
Q ss_pred HHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChh
Q 005732 259 LIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVD 332 (680)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~ 332 (680)
+...+.+.|++++|.+.++.+. |.+...+..+...+...|++++|...++.... .+..+|..+...+.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4566778999999999999876 66667777888889999999999999998877 45678999999999999999
Q ss_pred hHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhccc
Q 005732 333 DSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR-STFSVLFHACSCL 411 (680)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~ 411 (680)
+|...|+++.+.+ +.+..+|..+..++.+.|++++|.+.|+++.+. .|+. ..+..+...+...
T Consensus 85 ~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 85 EAIEHYRHALRLK--------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC--------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHc
Confidence 9999999998765 567788999999999999999999999999885 3554 4567778888899
Q ss_pred CChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005732 412 GSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFE 488 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 488 (680)
|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|+++.+ .+...|..+...+...|++++|+..++
T Consensus 149 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999876 66788899999999999999999999998863 457789999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCC
Q 005732 489 IMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELD 565 (680)
Q Consensus 489 ~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~ 565 (680)
+..+. .|+ ..++..+...+...|++++|.+.++++.+.+ +.+...+..++..+.+.|++++|.+.++++ . .+.+
T Consensus 228 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 228 RALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 99884 454 7888999999999999999999999999764 335778999999999999999999999988 2 4557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..++..++..+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=242.37 Aligned_cols=203 Identities=14% Similarity=0.207 Sum_probs=177.1
Q ss_pred hhHHHHHhhcCcCCcchhhhHhhhcccCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 005732 332 DDSKRLFEKMPHRSIISLNTMISVIPEMERN-PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC 410 (680)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 410 (680)
..+..+.+++.+.+. ... ...++.+|++|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++
T Consensus 7 s~~e~L~~~~~~k~~-------------~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~ 73 (501)
T 4g26_A 7 SPSENLSRKAKKKAI-------------QQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSL 73 (501)
T ss_dssp ------------------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhcc-------------cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Confidence 344555666666654 233 346888999999999999999999999999999999999999999987
Q ss_pred cCC---------hHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCHHHHHHHHHHHHHc
Q 005732 411 LGS---------LQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS----SPNVAAWTALMNGYSHH 477 (680)
Q Consensus 411 ~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~ 477 (680)
.+. .+.|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.
T Consensus 74 ~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 74 AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp CCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 654 68899999999999999999999999999999999999999999986 49999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 478 GLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 478 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
|+.++|.++|++|.+.|+.||..||+.|+.+|++.|++++|.+++++|.+.|..|+..+|+.++..+...
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=238.26 Aligned_cols=189 Identities=15% Similarity=0.073 Sum_probs=178.0
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCcc
Q 005732 49 VVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNS---------LIDGKQIHCLVLKSGYECFE 119 (680)
Q Consensus 49 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 119 (680)
...++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|+..+. ++.|.+++++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346889999999999999999999999999999999999999999987654 67899999999999999999
Q ss_pred hhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChH
Q 005732 120 FVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCE 199 (680)
Q Consensus 120 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 199 (680)
.+|++||.+|++.|++++|.++|++|.+.+ ..||..+|+.+|.+|++.|+ ++
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------~~Pd~~tyn~lI~~~~~~g~-~~ 157 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------------IQPRLRSYGPALFGFCRKGD-AD 157 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------CCCCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCccceehHHHHHHHHCCC-HH
Confidence 999999999999999999999999997655 68999999999999999999 99
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcC
Q 005732 200 KALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGC 266 (680)
Q Consensus 200 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (680)
+|.++|++|.+.|+.| |..||++||.+|++.|+.++|.++++.|.+.|..|+..||+.++..|+..
T Consensus 158 ~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 158 KAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999997 99999999999999999999999999999999999999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=213.35 Aligned_cols=431 Identities=9% Similarity=-0.033 Sum_probs=297.0
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
+......+.+.|+ +++|+..|+++.+.+ | +..+|..+..++...|++++|...++.+++.+ +.+...+..+..+|
T Consensus 9 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRNKK-YDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 3344455566666 677777777776654 3 66666667777777777777777777766654 33455666666677
Q ss_pred hcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc----CChhHHHHHH---HHHhccCChhh
Q 005732 264 CGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE----ANSISYNSMI---KGYAVYGQVDD 333 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll---~~~~~~~~~~~ 333 (680)
...|++++|...|+.+. +++.......+..+........+...+..+.. |+...+..-. ...........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 77777777777766655 33333333333333332222222222211111 1100000000 00000111111
Q ss_pred HHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCCCC--------C
Q 005732 334 SKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ---NNLHEKALQLYMTMRK-----LAIDR--------T 397 (680)
Q Consensus 334 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~p--------~ 397 (680)
+...+......... ..+ ..+.+...+......+.. .|++++|...|+++.+ ..-.| +
T Consensus 164 ~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 164 MASFFGIFKPELTF------ANY-DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp HHHHHTTSCCCCCC------SSC-CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred HHHHHhhcCHHHHH------HHh-cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 11111111110000 000 012335556566665665 8999999999999987 32122 2
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHH
Q 005732 398 RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGY 474 (680)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 474 (680)
..++..+...+...|++++|...++.+.+.... ...+..+...+...|++++|.+.++++.+ .+...|..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 446777888899999999999999999988633 88889999999999999999999988764 4677899999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (680)
...|++++|+..++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999985422 46788889999999999999999999999654 335778889999999999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005732 555 EFIKDM----PIELD----AVVWGALLSACWF---WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 555 ~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (680)
+.++++ +..++ ...+..++..+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999987 22222 4488899999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q 005732 624 KRLTHLE 630 (680)
Q Consensus 624 ~~~~~~~ 630 (680)
++..+..
T Consensus 473 ~~a~~~~ 479 (514)
T 2gw1_A 473 EESADLA 479 (514)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9998754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-22 Score=211.49 Aligned_cols=424 Identities=10% Similarity=0.001 Sum_probs=304.3
Q ss_pred eeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHH
Q 005732 182 VVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIE 261 (680)
Q Consensus 182 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 261 (680)
..|..+...+.+.|+ +++|++.|+++.+.. |.+..++..+..++...|++++|...++.+++.+ +.+...+..+..
T Consensus 26 ~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKN-FNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345556666777777 777777777777655 3366777777777777788888887777777765 345667777777
Q ss_pred HhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C----ChhHHHHHHHHHhccCChhhHH
Q 005732 262 FYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE--A----NSISYNSMIKGYAVYGQVDDSK 335 (680)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~ll~~~~~~~~~~~a~ 335 (680)
++...|++++|...|+.+. ..+......+..+...+....|...++.+.. | ........+..+....+.+.+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 7777888888887776443 1111112234455555666777777777755 1 1112233444555566666666
Q ss_pred HHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCh--------h
Q 005732 336 RLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ--------NNLHEKALQLYMTMRKLAIDRTR--------S 399 (680)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~--------~ 399 (680)
..+......+ +........+...+.. .|++++|..+|+++.+.. |+. .
T Consensus 181 ~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~ 244 (537)
T 3fp2_A 181 SSVNTSSNYD--------------TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAAL 244 (537)
T ss_dssp HTSCCCCSSC--------------SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHhhccccc--------------cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHH
Confidence 6666555433 1222233333333222 247889999999988743 432 2
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHH
Q 005732 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSH 476 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 476 (680)
++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|.+.|+++.+ .+..+|..+...+..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 46666677888999999999999998875 3377888889999999999999999988763 567889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
.|++++|+..++++.+... .+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 323 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999988432 236778888899999999999999999998654 34567888899999999999999999
Q ss_pred HHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchH
Q 005732 557 IKDM----P----IELDAVVWGALLSACWFW----------MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGK 618 (680)
Q Consensus 557 ~~~~----~----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (680)
++++ + .......+......+... |++++|...++++++.+|+++.++..++.+|...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9886 1 111233345556667777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 005732 619 KMDIRKRLTHLE 630 (680)
Q Consensus 619 A~~~~~~~~~~~ 630 (680)
|.+.+++..+..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-22 Score=207.68 Aligned_cols=323 Identities=11% Similarity=0.078 Sum_probs=246.3
Q ss_pred ccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccC
Q 005732 283 CLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEM 359 (680)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (680)
+...+..++..+.+.|++++|...|+++.. .+..++..+..++...|++++|...|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 333445555556666666666666665554 345566666667777777777777777766654
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----hhHHHH------------HHHhcccCChHHHHHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR----STFSVL------------FHACSCLGSLQQGQLLHAH 423 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~ 423 (680)
+.+..++..++.+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|...++.
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455667777777777777777777777777663 3332 333333 3447788899999999998
Q ss_pred HHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H
Q 005732 424 LVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-A 499 (680)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~ 499 (680)
+.+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+ ..|+ .
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChH
Confidence 88775 66788889999999999999999999988763 5788999999999999999999999999987 4455 3
Q ss_pred HHHHHH------------HHHHhccCCHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005732 500 ATFVGV------------LSACVRAGLVNEGMKIFRSMKSYGVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-PI 562 (680)
Q Consensus 500 ~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 562 (680)
..+..+ ...+.+.|++++|..+|+++.+.... + ...+..++.++.+.|++++|++.++++ ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444443 77889999999999999999975322 2 347888899999999999999999987 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH------------HHhcC-----CchHHHHHHH
Q 005732 563 EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI------------YAVLG-----KWGKKMDIRK 624 (680)
Q Consensus 563 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~ 624 (680)
.| +...+..++.+|...|++++|...++++++++|+++..+..++.+ |...| +.+++.+.++
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~ 404 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHH
Confidence 44 789999999999999999999999999999999999999998844 44555 5566677777
Q ss_pred H
Q 005732 625 R 625 (680)
Q Consensus 625 ~ 625 (680)
+
T Consensus 405 ~ 405 (450)
T 2y4t_A 405 K 405 (450)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=213.18 Aligned_cols=282 Identities=9% Similarity=-0.072 Sum_probs=229.2
Q ss_pred hhHHHHHHHHHhc---cCChhhHHHHHhhcCc-----C--CcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHH
Q 005732 315 SISYNSMIKGYAV---YGQVDDSKRLFEKMPH-----R--SIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQ 384 (680)
Q Consensus 315 ~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 384 (680)
...+......+.. .|++++|...|+++.+ . +...... .+.+..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------KEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH-------HHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc-------ChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344444444444 8899999999988876 3 1000000 02345678889999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---C
Q 005732 385 LYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---S 461 (680)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 461 (680)
.|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++. .
T Consensus 259 ~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 259 DIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 999998865 337788889999999999999999999999876 5677889999999999999999999998875 3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PT----LEH 536 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 536 (680)
.+...+..+...+...|++++|+..++++.+.. ..+...+..+...+...|++++|...++++...... ++ ...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 414 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 456788999999999999999999999998853 224678888999999999999999999999853222 12 338
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHH
Q 005732 537 YTCVVDLLGR---SGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILS 607 (680)
Q Consensus 537 ~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 607 (680)
+..+...+.. .|++++|.+.++++ .. +.+...+..++..+...|++++|...++++++..|+++..+..+.
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 8899999999 99999999999987 33 346888899999999999999999999999999999877766553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=203.67 Aligned_cols=346 Identities=9% Similarity=0.005 Sum_probs=244.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhcc
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVY 328 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 328 (680)
.+..+...+.+.|++++|..+|+.+. +.+...+..++.++...|++++|...|+++.. .+..++..+...+.+.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 33334444444444444444444333 33333344444444444555555555544444 2334555566666666
Q ss_pred CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh---hHHHHH------------HHHHHhCCChHHHHHHHHHHHHCC
Q 005732 329 GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP---VTWNSM------------ISGYVQNNLHEKALQLYMTMRKLA 393 (680)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~ 393 (680)
|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|+..|+++.+..
T Consensus 108 g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKSN--------------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp TCHHHHHHHHHHHHTSC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC--------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666666665543 2333 344333 555889999999999999998753
Q ss_pred CCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHH
Q 005732 394 IDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTAL 470 (680)
Q Consensus 394 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 470 (680)
+.+...+..+...+...|++++|...++.+.+.. +.+..++..++.+|...|++++|.+.|+++.+ .+...+..+
T Consensus 174 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 174 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 3467788999999999999999999999998875 66788999999999999999999999998763 344455544
Q ss_pred ------------HHHHHHcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 005732 471 ------------MNGYSHHGLGSEAVLLFEIMLEQDIVPN-----AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT 533 (680)
Q Consensus 471 ------------~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (680)
...+...|++++|+..|+++.+ ..|+ ...+..+...+.+.|++++|...++++.... +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 7889999999999999999998 4455 3478888899999999999999999998653 346
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSA------------CWFWM-----NMEVGERAAQK-MF 593 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~ 593 (680)
...|..+..+|...|++++|.+.++++ ...| +...+..+..+ |...| +.+++.+.+++ ++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l 408 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL 408 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 889999999999999999999999988 5566 46666666633 22233 66778888886 78
Q ss_pred cCCCCCCc----------hHHHHHHHHHhcCCchHH
Q 005732 594 GLDKKPIS----------AYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 594 ~~~p~~~~----------~~~~l~~~~~~~g~~~~A 619 (680)
+..|+... .+..+..+|...|+.+.+
T Consensus 409 ~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 409 QWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 88887522 344555566666555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-21 Score=203.83 Aligned_cols=427 Identities=12% Similarity=0.030 Sum_probs=316.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHhccCC---CCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 005732 152 LWSLMLVGYVQCNLMSDAFDVFIKMP---KKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRAC 228 (680)
Q Consensus 152 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 228 (680)
.|..+...+.+.|++++|+..|+++. +.+...|..+...+.+.|+ +++|++.|+++.+.+ |.+..++..+..++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~--p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIK--PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC--CchHHHHHHHHHHH
Confidence 34555566666666666666666544 3356678888888888888 899999999888866 33778888888888
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCC------CccchhhHHHHHHHhcCCHHH
Q 005732 229 ARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLEN------PCLNASNSLINGLISMGRIED 302 (680)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~ 302 (680)
...|++++|...++ .... .|+ .....+..+...+....|...++.+.. +........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 89999999988886 3322 222 122234455555666788888887751 122223566677777777777
Q ss_pred HHHHHHHhccCChh---HHHHHHHHHhc--------cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh-------h
Q 005732 303 AELIFNRLTEANSI---SYNSMIKGYAV--------YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP-------V 364 (680)
Q Consensus 303 a~~~~~~~~~~~~~---~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~ 364 (680)
+...+......+.. ....+...+.. .|++++|..+++++.+.+ +.+. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~~ 244 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--------------TVDDPLRENAAL 244 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--------------CCcchhhHHHHH
Confidence 77666665553322 23333333322 247899999999998866 3443 3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 5667778889999999999999999885 4667888999999999999999999999999876 667888999999999
Q ss_pred hcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005732 445 RCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
..|++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. ..+...+..+...+...|++++|.+.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998763 456789999999999999999999999999853 22467888889999999999999999
Q ss_pred HHHHHhcCCC-----CChhHHHHHHHHHHhc----------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 005732 522 FRSMKSYGVV-----PTLEHYTCVVDLLGRS----------GHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEV 584 (680)
Q Consensus 522 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 584 (680)
++++.+.... .....+..+...+.+. |++++|.+.++++ .. +.+...+..++..+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9998843211 1122244556677777 9999999999987 33 3468889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCchHH
Q 005732 585 GERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~ 604 (680)
|...+++++++.|+++....
T Consensus 481 A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999865544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-19 Score=179.48 Aligned_cols=297 Identities=10% Similarity=0.011 Sum_probs=227.1
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005732 315 SISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAI 394 (680)
Q Consensus 315 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 394 (680)
...+..+...+...|++++|...|+++.+.+ +.+..++..+..++...|++++|+..|+++.+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK- 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 3455666667777777777777777776654 5567777777777888888888888888777643
Q ss_pred CCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCC---chHhHHHHH------------HHHHHhcCChHHHHHHHhcC
Q 005732 395 DRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFE---SNVYVGTSL------------VDMYSRCGSINDAQASFSSI 459 (680)
Q Consensus 395 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~ 459 (680)
+.+...+..+...+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|.+.++++
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2245667777777777888888888888777764 3 344444444 57788889999999998877
Q ss_pred CC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhH
Q 005732 460 SS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEH 536 (680)
Q Consensus 460 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (680)
.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.... +...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 224 (359)
T 3ieg_A 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 224 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHH
Confidence 53 567788888889999999999999999988753 235778888888889999999999999988865422 3333
Q ss_pred HH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 537 YT------------CVVDLLGRSGHLHEAEEFIKDM-PIELD-A----VVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 537 ~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
+. .+...+.+.|++++|.+.++++ ...|+ . ..+..++.++...|++++|...++++++.+|+
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 32 2366788999999999999987 33343 3 23555777888999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
++..+..++.++...|++++|.+.+++..+.
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-16 Score=173.09 Aligned_cols=275 Identities=15% Similarity=0.171 Sum_probs=207.9
Q ss_pred HHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcc---------cCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 321 MIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIP---------EMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 321 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
+...+...|.+++|..+|++....+. ..+.++.... ....+..+|..+..++...|++++|++.|.+.
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~-A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTS-AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHH-HHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 44555667777777777777643211 1111221000 12345778888999999999999999998653
Q ss_pred CCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHH
Q 005732 392 LAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALM 471 (680)
Q Consensus 392 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 471 (680)
-|...|..++.+|.+.|+++++.+++...++.. +++...+.++.+|++.+++++..... ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 466778889999999999999999998887764 33333445888899988888655443 356667777888
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
..|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..+|...|++.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHH
Confidence 8999999999999999884 378888999999999999999988763 5678888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc--CCchHHHHHHH
Q 005732 552 EAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL--GKWGKKMDIRK 624 (680)
Q Consensus 552 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 624 (680)
.|...... +..++..+..++..|.+.|.+++|+.++++++.++|.+...+..++.+|.+. ++..|+.++|.
T Consensus 1268 LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99887765 3456667778888999999999999999999999999988898888887764 45666666654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-19 Score=176.17 Aligned_cols=306 Identities=11% Similarity=0.041 Sum_probs=213.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV 364 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (680)
..+...+...|++++|...|+++.. .+..++..+...+...|++++|...++++.+.+ +.+..
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~ 72 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------------MDFTA 72 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------CCcch
Confidence 3344444455555555555555444 223455555555555666666666665555443 34455
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---C-hhhHHHH------------HHHhcccCChHHHHHHHHHHHhcC
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDR---T-RSTFSVL------------FHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
.+..+...+...|++++|...|+++.+. .| + ...+..+ ...+...|++++|...++.+.+..
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 5666666666666666666666666553 23 1 2222222 456677788888888888777765
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHH-
Q 005732 429 FESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFV- 503 (680)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~- 503 (680)
+.+...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|...+++..+. .|+ ...+.
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 227 (359)
T 3ieg_A 151 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 227 (359)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHH
Confidence 55677778888888888888888888877653 46778888888888899999999999888874 344 33222
Q ss_pred -----------HHHHHHhccCCHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 005732 504 -----------GVLSACVRAGLVNEGMKIFRSMKSYGVVPTL----EHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DA 566 (680)
Q Consensus 504 -----------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 566 (680)
.+...+...|++++|...++++.+.... +. ..+..+..++...|++++|.+.+++. ...| ++
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence 2356688899999999999999865433 22 23456788899999999999999987 3344 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (680)
..+..++..+...|++++|...++++++.+|+++..+..+..+....
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999988888887776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-16 Score=167.30 Aligned_cols=528 Identities=11% Similarity=0.082 Sum_probs=339.0
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCC-CC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMP-IR-----TVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC 94 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~ 94 (680)
-...+.+|...|.+.+|.++++++. .| +....+.++.+-.+. +..+..+..++.... + ...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 3467777778888888888887764 22 335566666666665 445555555554421 1 23355666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhc
Q 005732 95 AQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFI 174 (680)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 174 (680)
...|.+++|..+|+... -.....+.+ +-..|++++|.++.++. .++.+|..+.+++...|++++|++.|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77888888888888752 111111222 22677888888888876 346678888888888888888888887
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch
Q 005732 175 KMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDES 254 (680)
Q Consensus 175 ~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 254 (680)
+. .|...|..++..+.+.|+ +++|.+.|...++... ++...+.++.+|++.++++...... + .++..
T Consensus 1130 KA--dD~say~eVa~~~~~lGk-yEEAIeyL~mArk~~~---e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGN-WEELVKYLQMARKKAR---ESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhcc---cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence 64 566677778888888888 8888888887776552 3333345788888888777543332 1 34555
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
.+..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++. .+..+|..+..+|...|++..|
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHH
Confidence 6667888888888888888888875 46788888888888888888888877 4557888888888888888888
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc--cC
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC--LG 412 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~ 412 (680)
......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...+++ .+
T Consensus 1270 ~~cgl~I------------------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1270 QMCGLHI------------------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHhh------------------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 8776643 2355667788889999999999999997776433 2233345444444443 44
Q ss_pred ChHHHHHHHHHHHhcCCC------chHhHHHHHHHHHHhcCChHHHHHHHhcC-------------C--CCCHHHHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFE------SNVYVGTSLVDMYSRCGSINDAQASFSSI-------------S--SPNVAAWTALM 471 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~--~~~~~~~~~l~ 471 (680)
+..++.+.|..-. +++ -+...|..++..|.+.|+++.|....-+- . ..++..|...+
T Consensus 1331 klmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai 1408 (1630)
T 1xi4_A 1331 KMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHH
Confidence 4445555544322 222 25667888888999999999888433222 1 14566666666
Q ss_pred HHHHHcC---------------ChhHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHhccCCHHHHHH---
Q 005732 472 NGYSHHG---------------LGSEAVLLFEIMLEQDIVPNAATFV-------------GVLSACVRAGLVNEGMK--- 520 (680)
Q Consensus 472 ~~~~~~~---------------~~~~A~~~~~~m~~~~~~p~~~~~~-------------~ll~~~~~~g~~~~A~~--- 520 (680)
..|...+ +++++.++|.+. |.-|-...|. .+...+....+++.-..
T Consensus 1409 ~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~ 1485 (1630)
T 1xi4_A 1409 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 1485 (1630)
T ss_pred HHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHh
Confidence 6666555 566666655421 1111111111 11122222222221111
Q ss_pred ---------HHHHHHhcCCCCChhHHHHHHH-HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005732 521 ---------IFRSMKSYGVVPTLEHYTCVVD-LLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQ 590 (680)
Q Consensus 521 ---------~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 590 (680)
+-.++. +.+..-+..+.. .|.+.|+|..|.+++++.+. |.-.+.....+|+.+.+++++.
T Consensus 1486 ~~~nfd~~~La~~le----kheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~ 1555 (1630)
T 1xi4_A 1486 AYDNFDNISLAQRLE----KHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQ 1555 (1630)
T ss_pred hccCcCHHHHHHHhh----hhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 111111 111222233333 34455899999999888763 3445666778899999888888
Q ss_pred HHHcCCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005732 591 KMFGLDKKPISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 591 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
-..+. .+.+.|......++..-+.+-++++
T Consensus 1556 ~F~~~--~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1556 WFLQE--EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred HHHhc--CChhHHHHHHHHHhccCCchHHHHH
Confidence 87777 5557788888888888888777765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-17 Score=173.84 Aligned_cols=377 Identities=12% Similarity=0.010 Sum_probs=292.8
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhc----CCCHHHH
Q 005732 201 ALKLFRWMRESGENMPNEYTFDSVIRACAR----LGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCG----CEAFDGA 272 (680)
Q Consensus 201 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 272 (680)
+++.+....+.| ++..+..+...+.. .++.++|...++...+.| +...+..|...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 355555555544 66677777777766 778888888888877764 45566677777777 7788888
Q ss_pred HHHHhhcC-CCccchhhHHHHHHHh----cCCHHHHHHHHHHhcc-CChhHHHHHHHHHhc----cCChhhHHHHHhhcC
Q 005732 273 MRVYDRLE-NPCLNASNSLINGLIS----MGRIEDAELIFNRLTE-ANSISYNSMIKGYAV----YGQVDDSKRLFEKMP 342 (680)
Q Consensus 273 ~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~ 342 (680)
.+.|++.. ..++..+..+...|.. .+++++|...|++... .+...+..+...|.. .++.++|.+.|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 88888776 5556666677777777 6788888888888766 556677777777776 778999999998887
Q ss_pred cCCcchhhhHhhhcccCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCCh
Q 005732 343 HRSIISLNTMISVIPEMERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSL 414 (680)
Q Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~ 414 (680)
+.+ +...+..+...|.. .+++++|+++|++..+.| +...+..+...+.. .++.
T Consensus 179 ~~~----------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 179 EQG----------------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp HTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HCC----------------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 644 56778888888887 889999999999988765 45566666666664 7889
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCHHHHHHHHHHHHHc-----CChhHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSR----CGSINDAQASFSSISS-PNVAAWTALMNGYSHH-----GLGSEAV 484 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~ 484 (680)
++|..+++...+.+ ++..+..+...|.. .++.++|.+.|++..+ .+...+..+...|... +++++|+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999999988875 34556667777777 8899999999988764 5677788888888887 8999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHH
Q 005732 485 LLFEIMLEQDIVPNAATFVGVLSACVRAG---LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFI 557 (680)
Q Consensus 485 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 557 (680)
.+|++..+.| +...+..+...|...| ++++|.++|++..+.+ ++..+..|...|.. .+++++|.+.+
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999865 4566667777776656 7899999999999764 67788888889988 89999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCC---CCchHHHHHHHHHh
Q 005732 558 KDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDKK---PISAYVILSNIYAV 612 (680)
Q Consensus 558 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 612 (680)
++.....++..+..+...+.. .++.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 391 ~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 391 RKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 987434468888889988887 89999999999999999954 66667777766554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-18 Score=169.08 Aligned_cols=285 Identities=10% Similarity=-0.003 Sum_probs=193.8
Q ss_pred hHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005732 316 ISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID 395 (680)
Q Consensus 316 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 395 (680)
..+..+...+...|++++|.++|+++.+.+ +.+...+..++.++...|++++|...++++.+.. +
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 87 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-P 87 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-c
Confidence 344444555555555555555555555443 3444555555566666666666666666665532 2
Q ss_pred CChhhHHHHHHHhcccC-ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHH
Q 005732 396 RTRSTFSVLFHACSCLG-SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALM 471 (680)
Q Consensus 396 p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 471 (680)
.+...+..+...+...| ++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ .+...+..+.
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 23445555556666666 6666666666666554 44555666677777777777777777766542 3345666677
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--------CCCChhHHHHHHHH
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYG--------VVPTLEHYTCVVDL 543 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~ 543 (680)
..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..+
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 78888888888888888887743 2246777778888888888888888888877431 13345678888888
Q ss_pred HHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH-hcCCch
Q 005732 544 LGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA-VLGKWG 617 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 617 (680)
+...|++++|.+.+++. .. +.+...+..++.++...|++++|...++++++.+|+++..+..++.++. ..|+.+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88889999988888876 22 3367788888888888999999999999999999998888888888884 455543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-16 Score=166.71 Aligned_cols=361 Identities=12% Similarity=-0.001 Sum_probs=302.2
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHhhc----CCCHHHHHHHHhhcC-CCccchhhHHHHHHHh----cCCHHHHHHHHH
Q 005732 238 KVVHGLLIKCGFEFDESIGGALIEFYCG----CEAFDGAMRVYDRLE-NPCLNASNSLINGLIS----MGRIEDAELIFN 308 (680)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 308 (680)
...+....+.| +...+..|...|.. .+++++|...|+... ..+...+..+...|.. .++.++|...|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 44444444443 56677777778877 899999999999887 6667777888899998 899999999999
Q ss_pred Hhcc-CChhHHHHHHHHHhc----cCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh----CCCh
Q 005732 309 RLTE-ANSISYNSMIKGYAV----YGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ----NNLH 379 (680)
Q Consensus 309 ~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~ 379 (680)
+..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------------~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------------RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCCCCCH
Confidence 9877 567788888888887 889999999999987754 56778888888887 7899
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHh----cCChHH
Q 005732 380 EKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR----CGSIND 451 (680)
Q Consensus 380 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 451 (680)
++|++.|++..+.| +...+..+...|.. .++.++|...++...+.+ ++..+..+...|.. .++.++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998865 56777777777776 899999999999999876 45667778888876 789999
Q ss_pred HHHHHhcCCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHH
Q 005732 452 AQASFSSISS-PNVAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRA-----GLVNEGMKI 521 (680)
Q Consensus 452 A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~ 521 (680)
|.+.|++..+ .+...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|..+
T Consensus 242 A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 242 SRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 9999998764 667788888888888 899999999999998865 556677777777776 899999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHc
Q 005732 522 FRSMKSYGVVPTLEHYTCVVDLLGRSG---HLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFG 594 (680)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 594 (680)
+++..+.+ +...+..+...|...| ++++|++++++.....++..+..+...+.. .+++++|...++++.+
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99999865 4567778888888766 889999999988434678889999999988 8999999999999998
Q ss_pred CCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 595 LDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 595 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
.+ ++.++..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 65 56789999999998 8999999999999998774
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=164.89 Aligned_cols=266 Identities=14% Similarity=0.036 Sum_probs=231.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
+.+...+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++.+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 5667778889999999999999999999998754 3445567778888899999999999999999876 6678889999
Q ss_pred HHHHHhcC-ChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005732 440 VDMYSRCG-SINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 440 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 515 (680)
...+...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.... +...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 45678999999999999999999999999985422 356677788999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHH
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-----------IELDAVVWGALLSACWFWMNMEV 584 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~ 584 (680)
++|.+.++++.... +.+...+..+...+...|++++|.+.++++- .+.....+..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999754 3467889999999999999999999998761 13346789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
|...++++++..|+++..+..++.++...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-18 Score=171.52 Aligned_cols=258 Identities=11% Similarity=-0.020 Sum_probs=178.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
.+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 2233344444444555555555555555544443 334444555555555
Q ss_pred hcCChHHHHHHHhcCCC--CC-HH----------------HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHH
Q 005732 445 RCGSINDAQASFSSISS--PN-VA----------------AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVG 504 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~--~~-~~----------------~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ 504 (680)
..|++++|.+.++++.. |+ .. .+..+ ..+...|++++|+..|+++.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL-GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT-HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH-HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555544331 11 11 11122 33348899999999999999843221 4788889
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 582 (680)
+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.++++ ... .+...+..++.++...|++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999998654 345788999999999999999999999987 333 4688899999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------CchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 583 EVGERAAQKMFGLDKKP-----------ISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
++|...++++++..|++ +.++..++.+|...|++++|..++++.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999998887 788999999999999999999998653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-18 Score=164.70 Aligned_cols=281 Identities=11% Similarity=0.096 Sum_probs=135.0
Q ss_pred cCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHH
Q 005732 30 RNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCL 109 (680)
Q Consensus 30 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~ 109 (680)
+.|++++|.+++++++.|+ +|+.+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6688999999999997765 8999999999999999999999653 5788999999999999999999998888
Q ss_pred HHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHH
Q 005732 110 VLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLIS 189 (680)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 189 (680)
..+. .+++.+.+.++.+|.+.|+++++.++++. ++..+|..+...|...|++++|...|.++ ..|..+..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 8774 45578899999999999999999988864 66779999999999999999999999988 48999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCH
Q 005732 190 GYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAF 269 (680)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (680)
.+.+.|+ +++|++.+.++ . ++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+
T Consensus 157 ~L~~Lg~-yq~AVea~~KA------~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 157 TLVHLGE-YQAAVDGARKA------N-STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHTTTC-HHHHHHHHHHH------T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcc-HHHHHHHHHHc------C-CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCH
Confidence 9999999 99999999998 2 889999999999999999999554433 233444455789999999999
Q ss_pred HHHHHHHhhcC---CCccchhhHHHHHHHhc--CCHHHHHHHHHHhcc--------CChhHHHHHHHHHhccCChhhHHH
Q 005732 270 DGAMRVYDRLE---NPCLNASNSLINGLISM--GRIEDAELIFNRLTE--------ANSISYNSMIKGYAVYGQVDDSKR 336 (680)
Q Consensus 270 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~ 336 (680)
++|..+++... +.....|..+.-.|++- ++..+.++.|..-.. .+...|..+.-.|...++++.|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 99999999987 44445566666666654 455556665554433 246678889999999999998877
Q ss_pred HHhhc
Q 005732 337 LFEKM 341 (680)
Q Consensus 337 ~~~~~ 341 (680)
..-.-
T Consensus 304 tm~~h 308 (449)
T 1b89_A 304 TMMNH 308 (449)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 65544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=172.58 Aligned_cols=386 Identities=9% Similarity=-0.065 Sum_probs=220.0
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHh-----C--CCC-CchHHHHHHHHhhcCCCHHHHHHHHhhcC--------
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKC-----G--FEF-DESIGGALIEFYCGCEAFDGAMRVYDRLE-------- 280 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------- 280 (680)
....|+.+...+...|+.++|.+.++..++. + ..| ...+|+.+..+|...|++++|...+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566888888888999999999998887653 1 122 34567788888888888888888877654
Q ss_pred ---CCccchhhHHHHHHHhc--CCHHHHHHHHHHhcc--CC-hhHHHHHHHH---HhccCChhhHHHHHhhcCcCCcchh
Q 005732 281 ---NPCLNASNSLINGLISM--GRIEDAELIFNRLTE--AN-SISYNSMIKG---YAVYGQVDDSKRLFEKMPHRSIISL 349 (680)
Q Consensus 281 ---~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 349 (680)
......+.....++... +++++|...|++... |+ ...+..+..+ +...++.++|++.+++..+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---- 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---- 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC----
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC----
Confidence 11122333344444433 356677777776665 33 2333333333 334456666666666665544
Q ss_pred hhHhhhcccCCCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHH
Q 005732 350 NTMISVIPEMERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLV 425 (680)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 425 (680)
+.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+..+.
T Consensus 206 ----------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 206 ----------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp ----------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 4455555555444433 345566666666665532 2334455666666666666666666666666
Q ss_pred hcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005732 426 KTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGV 505 (680)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 505 (680)
+.. +.+..++..+..+|...+....+... ..........+.++.|...+++..+.. ..+..++..+
T Consensus 275 ~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 340 (472)
T 4g1t_A 275 EYI-PNNAYLHCQIGCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSIL 340 (472)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhH
Confidence 654 44455555555444322111110000 000001111233577888888887743 1235567778
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChh--HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 005732 506 LSACVRAGLVNEGMKIFRSMKSYGVVPTLE--HYTCVVD-LLGRSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMN 581 (680)
Q Consensus 506 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 581 (680)
...+...|++++|.+.|++..+....+... .+..+.. .+...|++++|++.+++. .+.|+.... .+.
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~ 411 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKM 411 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHH
Confidence 888999999999999999988755443321 2333333 235678999999999876 556654332 223
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEE
Q 005732 582 MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWI 640 (680)
Q Consensus 582 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 640 (680)
...+..++++.++.+|+++.++..+|.+|...|++++|++.+++..+.+.......+|+
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 45566788899999999999999999999999999999999999998876665555554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-15 Score=161.81 Aligned_cols=396 Identities=9% Similarity=0.012 Sum_probs=255.3
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC--CCccchhhHHHH-H
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE--NPCLNASNSLIN-G 293 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~-~ 293 (680)
|...|..++.. .+.|+++.|..+++.+++.. +.+...|..++..+.+.|++++|..+|+++. .|+...|...+. .
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44445555542 44555555555555555442 3344455555555555555555555555554 223333333332 1
Q ss_pred HHhcCCHHHHHH----HHHHhcc------CChhHHHHHHHHHhc---------cCChhhHHHHHhhcCcCCcchhhhHhh
Q 005732 294 LISMGRIEDAEL----IFNRLTE------ANSISYNSMIKGYAV---------YGQVDDSKRLFEKMPHRSIISLNTMIS 354 (680)
Q Consensus 294 ~~~~g~~~~a~~----~~~~~~~------~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~l~~ 354 (680)
....|+.+.|.+ +|++... ++...|...+....+ .|+++.|..+|++..+...
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~-------- 161 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM-------- 161 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC--------
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh--------
Confidence 123344444433 4444322 233455555554433 6778888888888877211
Q ss_pred hcccCCCChhHHHHHHHHH-------------HhCCChHHHHHHHHHHH------HCC---CCCCh--------hhHHHH
Q 005732 355 VIPEMERNPVTWNSMISGY-------------VQNNLHEKALQLYMTMR------KLA---IDRTR--------STFSVL 404 (680)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~~---~~p~~--------~~~~~l 404 (680)
......|....... ...+++..|..++..+. +.. ++|+. ..|...
T Consensus 162 -----~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 162 -----INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp -----TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 11122333222110 12345677777776632 111 23431 234333
Q ss_pred HHHhcc----cCCh----HHHHHHHHHHHhcCCCchHhHHHHHHHHHHh-------cCChH-------HHHHHHhcCCC-
Q 005732 405 FHACSC----LGSL----QQGQLLHAHLVKTPFESNVYVGTSLVDMYSR-------CGSIN-------DAQASFSSISS- 461 (680)
Q Consensus 405 l~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~- 461 (680)
+..... .++. +.+..++++++... +.++..|..++..+.+ .|+++ +|.++|++..+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 332221 1233 46778888888764 6678888888888875 69987 89999998763
Q ss_pred --C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhH
Q 005732 462 --P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-A-ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEH 536 (680)
Q Consensus 462 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (680)
| +...|..++..+.+.|++++|..+|+++.+ +.|+ . ..|..++..+.+.|++++|.++|++..+... .+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHH
Confidence 3 578899999999999999999999999999 4565 2 4788888888899999999999999996532 23333
Q ss_pred HHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc----hHHHHHHH
Q 005732 537 YTCVVDL-LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS----AYVILSNI 609 (680)
Q Consensus 537 ~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~ 609 (680)
|...+.. +...|+.++|.++|++. ...| ++..|..++..+...|+.++|..+|+++++..|.++. .|...+..
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3332222 34689999999999987 3344 6888999999999999999999999999998877655 67777888
Q ss_pred HHhcCCchHHHHHHHHHhhCCC
Q 005732 610 YAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
....|+.+.+.++.+++.+.-+
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHcCCHHHHHHHHHHHHHHCc
Confidence 8889999999999999887543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-16 Score=151.74 Aligned_cols=257 Identities=10% Similarity=-0.011 Sum_probs=171.6
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
++.....|++..|+..++.....+. .........+..+|...|+++.|+..++. .-+|+..++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p-------------~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~ 68 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSP-------------ERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAV 68 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCc-------------hhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHH
Confidence 3445667888888888887765441 11134556678899999999999987654 235566778
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCC-CchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPF-ESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLG 480 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 480 (680)
..+...+...++.++|...++.+...+. +.++..+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence 8888888888999999999998887763 44666677777888888888888888888 56677888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005732 481 SEAVLLFEIMLEQDIVPNAATFV---GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFI 557 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (680)
++|.+.|+++.+. .|+..... ..+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+
T Consensus 147 ~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888874 35532111 12223334467777777777776542 335555555555566666666666555
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHcCCCCCC
Q 005732 558 KDM-PIEL-DAVVWGALLSACWFWMNMEV-GERAAQKMFGLDKKPI 600 (680)
Q Consensus 558 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~ 600 (680)
+++ ...| ++.++..++..+...|+.++ +.++++++++++|+++
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 554 2223 45555555555555555543 3455555555555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=154.84 Aligned_cols=221 Identities=13% Similarity=0.152 Sum_probs=66.5
Q ss_pred cCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005732 131 NCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRE 210 (680)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 210 (680)
+.|+.++|.+.++++..+ .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|+ +++|..+++..++
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~-~EeAi~yl~~ark 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN-WEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 567777777777777333 46777777777777777777777543 455566777777766666 6777776655554
Q ss_pred cCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHH
Q 005732 211 SGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSL 290 (680)
Q Consensus 211 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 290 (680)
. .+ ++.+.+.++.++.+.|+++++.++++ .|+..++..+...|...|.+++|...|..+ +.|..+
T Consensus 90 ~--~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 90 K--AR-ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred h--Cc-cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 3 22 55666667777777777776666553 355556777777777777777777777655 355666
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMI 370 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li 370 (680)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------------------~~ad~l~~lv 214 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------------------VHADELEELI 214 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------------------TCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------------------hCHhhHHHHH
Confidence 66666666666666666666 256666666666666666666655444322 1122233455
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 005732 371 SGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~ 391 (680)
..|.+.|++++|+.+++....
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHhC
Confidence 666666666666666666543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=166.22 Aligned_cols=261 Identities=9% Similarity=-0.046 Sum_probs=198.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
+...+..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456667777777777777777777776643 2345567777777777777777777777777665 455667777777
Q ss_pred HHHhcCChHHHHHHHhcCCC--CC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 005732 442 MYSRCGSINDAQASFSSISS--PN-----------VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-PNAATFVGVLS 507 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~ 507 (680)
+|...|++++|.+.|+++.+ |+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 77777777777777776653 11 223445577888999999999999999985322 15788999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 585 (680)
.+...|++++|.+.++++.+.. +.+..+|..+..+|...|++++|++.++++ ...| +...+..++.++...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999754 346888999999999999999999999987 3344 588899999999999999999
Q ss_pred HHHHHHHHcCCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 586 ERAAQKMFGLDKK------------PISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 586 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
...+++++++.|+ +...+..++.++...|+.+.|.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998877 356799999999999999999888765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=159.72 Aligned_cols=292 Identities=11% Similarity=0.018 Sum_probs=164.2
Q ss_pred hcCCCHHHHHH-HHhhcC---CC----ccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChh
Q 005732 264 CGCEAFDGAMR-VYDRLE---NP----CLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVD 332 (680)
Q Consensus 264 ~~~g~~~~A~~-~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~ 332 (680)
...|++++|.+ .|++.. +. +...+..+...+...|++++|...|+++.. .+..++..+..++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34467788877 777554 21 234456777888888888888888888776 34557777888888888888
Q ss_pred hHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhccc
Q 005732 333 DSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS-TFSVLFHACSCL 411 (680)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~ 411 (680)
+|...|+++.+.+ +.+..++..+...+...|++++|++.|+++.... |+.. .+......
T Consensus 116 ~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~---- 175 (368)
T 1fch_A 116 LAISALRRCLELK--------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG---- 175 (368)
T ss_dssp HHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------
T ss_pred HHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH----
Confidence 8888888877765 5677788888888888888888888888887743 3222 11100000
Q ss_pred CChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---CHHHHHHHHHHHHHcCChhHHHHH
Q 005732 412 GSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P---NVAAWTALMNGYSHHGLGSEAVLL 486 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~ 486 (680)
.. .......+..+...+ ..|++++|.+.|+++.+ | +...+..+...+...|++++|+..
T Consensus 176 ---~~------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 176 ---AG------------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp -------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---hh------------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00 000000001111122 44555555555554432 2 345555555566666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 005732 487 FEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL- 564 (680)
Q Consensus 487 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 564 (680)
|+++.+.. ..+...+..+...+...|++++|...++++.... +.+...+..+..+|.+.|++++|.+.++++ ...|
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 66655532 1134555556666666666666666666665432 234455556666666666666666666554 1111
Q ss_pred -----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005732 565 -----------DAVVWGALLSACWFWMNMEVGERAAQKMF 593 (680)
Q Consensus 565 -----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 593 (680)
...+|..++.++...|+.++|..++++.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 15566666666777777777766665443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-15 Score=157.87 Aligned_cols=373 Identities=9% Similarity=0.028 Sum_probs=269.8
Q ss_pred HHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CCh
Q 005732 241 HGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--ANS 315 (680)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~ 315 (680)
++..++.. +-+...|..++. +.+.|++++|..+|+++. |.+...|...+..+.+.|++++|..+|++... |+.
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 34444443 446778988888 478999999999999987 67777789999999999999999999999988 877
Q ss_pred hHHHHHHHHH-hccCChhhHHH----HHhhcCcC-CcchhhhHhhhcccCCCChhHHHHHHHHHHh---------CCChH
Q 005732 316 ISYNSMIKGY-AVYGQVDDSKR----LFEKMPHR-SIISLNTMISVIPEMERNPVTWNSMISGYVQ---------NNLHE 380 (680)
Q Consensus 316 ~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~---------~~~~~ 380 (680)
..|...+... ...|+.+.|.+ +|+..... |. .+.+...|...+....+ .|+++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~------------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM------------EIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT------------STTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC------------CcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 7777666533 35677777665 66655432 21 13467788887776654 68899
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH---h----------cccCChHHHHHHHHHH------HhcC---CCch------
Q 005732 381 KALQLYMTMRKLAIDRTRSTFSVLFHA---C----------SCLGSLQQGQLLHAHL------VKTP---FESN------ 432 (680)
Q Consensus 381 ~A~~~~~~m~~~~~~p~~~~~~~ll~~---~----------~~~~~~~~a~~~~~~~------~~~~---~~~~------ 432 (680)
+|..+|++..+....+....|...... + ...+++..|..++... .+.. ++|+
T Consensus 148 ~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 148 AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 999999999872111111233322211 1 1345566777666652 2221 2333
Q ss_pred --HhHHHHHHHHHHhc----CCh----HHHHHHHhcCCC---CCHHHHHHHHHHHHH-------cCChh-------HHHH
Q 005732 433 --VYVGTSLVDMYSRC----GSI----NDAQASFSSISS---PNVAAWTALMNGYSH-------HGLGS-------EAVL 485 (680)
Q Consensus 433 --~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~A~~ 485 (680)
...|...+...... ++. +.+..+|+++.. .+...|..++..+.+ .|+++ +|..
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 23455444332221 222 366777877663 567888888888775 68887 8999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005732 486 LFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-P 561 (680)
Q Consensus 486 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 561 (680)
+|++..+. +.| +...+..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++. .
T Consensus 308 ~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 308 IYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999863 245 4778888888899999999999999999974 343 357888899999999999999999987 4
Q ss_pred CCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 562 IEL-DAVVWGALLSA-CWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 562 ~~p-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..| +...+...+.. +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 344 34444433333 3358999999999999999999999999999999999999999999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=159.01 Aligned_cols=383 Identities=9% Similarity=-0.019 Sum_probs=240.7
Q ss_pred eeeHHHHHHHHHhCCCChHHHHHHHHHHHHc-------CCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhC-----
Q 005732 181 VVVWTKLISGYAKSVDGCEKALKLFRWMRES-------GENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCG----- 248 (680)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 248 (680)
...||.+...+...|+ +++|++.|++..+. ...|....+|..+..++...|++++|...++...+..
T Consensus 51 a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568999999999999 99999999998652 1123245689999999999999999999999886531
Q ss_pred -CCC-CchHHHHHHHHhhc--CCCHHHHHHHHhhcC---CCccchhhHHHHH---HHhcCCHHHHHHHHHHhcc--C-Ch
Q 005732 249 -FEF-DESIGGALIEFYCG--CEAFDGAMRVYDRLE---NPCLNASNSLING---LISMGRIEDAELIFNRLTE--A-NS 315 (680)
Q Consensus 249 -~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~--~-~~ 315 (680)
..+ ...++..+..++.. .+++++|.+.|++.. |.++.++..+..+ +...++.++|+..+++... | +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 111 23455555555544 467999999999987 6666666555555 3456788899999988776 3 45
Q ss_pred hHHHHHHHHHhcc----CChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005732 316 ISYNSMIKGYAVY----GQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK 391 (680)
Q Consensus 316 ~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 391 (680)
.++..+...+... ++.++|.+.+++....+ +.+..++..+...|...|++++|++.+++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--------------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC--------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 5666666666544 57889999999988876 67888999999999999999999999999987
Q ss_pred CCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHH
Q 005732 392 LAIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAW 467 (680)
Q Consensus 392 ~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 467 (680)
. .|+ ..++..+...|...+.. ..... ...........+..+.|...++...+ .+...+
T Consensus 276 ~--~p~~~~~~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 337 (472)
T 4g1t_A 276 Y--IPNNAYLHCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337 (472)
T ss_dssp H--STTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCH
T ss_pred h--CCChHHHHHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhh
Confidence 4 344 44555555444221110 00000 00011111122335666666665542 445677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAA--TFVGVLS-ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..+...+...|++++|+..|++..+....|... .+..+.. .....|++++|++.|++..+.. |+.......
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~---- 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM---- 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH----
Confidence 888899999999999999999999854333221 2222222 2357899999999999988643 333222221
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHH
Q 005732 545 GRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILS 607 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 607 (680)
...+.+++++. . .+.++.+|..++.++...|++++|+..|+++++++|.+|.+...+|
T Consensus 412 -----~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 -----KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 22333444433 2 2446788999999999999999999999999999999888776655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=159.59 Aligned_cols=224 Identities=12% Similarity=0.078 Sum_probs=128.6
Q ss_pred cchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCC
Q 005732 284 LNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEME 360 (680)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (680)
...+..+...+.+.|++++|...|+++.. .+..++..+...+...|++++|...|+++.+.+ +
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------p 130 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------------P 130 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------T
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------C
Confidence 34467777788888888888888888776 345677778888888888888888888877655 5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-----------hhHHHHHHHhcccCChHHHHHHHHHHHhcCC
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR-----------STFSVLFHACSCLGSLQQGQLLHAHLVKTPF 429 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 429 (680)
.+..+|..+..+|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|...++++.+..
T Consensus 131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 207 (365)
T 4eqf_A 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN- 207 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-
T ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-
Confidence 567778888888888888888888888877632 221 112223455556666666666666665543
Q ss_pred Cc--hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHH
Q 005732 430 ES--NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFV 503 (680)
Q Consensus 430 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 503 (680)
+. +..++..+...|...|++++|.+.|+++.+ .+..+|..+..+|...|++++|+..|+++.+. .|+ ..++.
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 285 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRY 285 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHH
Confidence 22 344455555555555555555555444331 23444444444444444444444444444442 222 34444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
.+..+|...|++++|...|+++.
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=156.88 Aligned_cols=263 Identities=9% Similarity=-0.056 Sum_probs=221.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44567788889999999999999999998854 3466788888999999999999999999999886 667888999999
Q ss_pred HHHhcCChHHHHHHHhcCCC--C-CHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005732 442 MYSRCGSINDAQASFSSISS--P-NVAAWTAL--------------MN-GYSHHGLGSEAVLLFEIMLEQDIVPNAATFV 503 (680)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 503 (680)
.+...|++++|.+.++++.+ | +...+..+ .. .+...|++++|...++++.+.. ..+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999988753 2 22222222 22 3677889999999999999854 22678888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMN 581 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 581 (680)
.+...+...|++++|.+.++++.... +.+...+..+...+...|++++|.+.++++ .. +.+...+..++..+...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999654 346788999999999999999999999987 33 3468889999999999999
Q ss_pred HHHHHHHHHHHHcCCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 582 MEVGERAAQKMFGLDKK------------PISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 582 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+++|...++++++..|+ ++..+..++.++...|++++|..++++..+
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999 678899999999999999999999876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-15 Score=148.21 Aligned_cols=222 Identities=9% Similarity=0.038 Sum_probs=124.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh
Q 005732 287 SNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP 363 (680)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 363 (680)
+......+...|++++|...|+++.. .+..++..+...+...|++++|...++++.+.+ +.+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~ 89 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------PKDI 89 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------cCCH
Confidence 35556666677777777777777655 344567777777778888888888888777654 5567
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHH--------------HH-HhcccCChHHHHHHHHHHHhc
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS-TFSVL--------------FH-ACSCLGSLQQGQLLHAHLVKT 427 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~ 427 (680)
.++..+...+...|++++|.+.++++.+.. |+.. .+..+ .. .+...|++++|...++.+.+.
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 778888888888888888888888887643 3222 22222 11 245555666666666665554
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005732 428 PFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVG 504 (680)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 504 (680)
. +.+...+..+...+...|++++|.+.++++.+ .+...|..+...+...|++++|+..++++.+.. ..+...+..
T Consensus 168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 245 (327)
T 3cv0_A 168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYN 245 (327)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 4 33444445555555555555555554444331 233444444444444444444444444444421 112334444
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
+...+...|++++|.+.++++.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 4444444444444444444444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=138.70 Aligned_cols=269 Identities=7% Similarity=-0.013 Sum_probs=140.8
Q ss_pred HcCCChHHHHHHHhhhcCCchh----HHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHH
Q 005732 130 ANCFEIEEAKRVFDELHEDNEL----LWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLF 205 (680)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 205 (680)
...|++..|+..++.....++. ....+.++|...|+++.|+..++....|+..++..+...+...++ .++|++.+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~-~~~A~~~l 88 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR-RDAIVAEL 88 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc-HHHHHHHH
Confidence 3456777777776665443322 233445666666666666666655434444455555555555555 56666666
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccc
Q 005732 206 RWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLN 285 (680)
Q Consensus 206 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 285 (680)
+++...+..|.+...+..+...+...|++++|...++. +.+...+..++..|.+.|++++|.+.|+++
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~------ 156 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM------ 156 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH------
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Confidence 66655544342344444444555555666666555544 234444555555555555555555555544
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHHhcc--CChhHH---HHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCC
Q 005732 286 ASNSLINGLISMGRIEDAELIFNRLTE--ANSISY---NSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEME 360 (680)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (680)
.. |+.... ..++..+...|++++|..+|+++.+.. +
T Consensus 157 -------------------------~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------------p 197 (291)
T 3mkr_A 157 -------------------------QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--------------S 197 (291)
T ss_dssp -------------------------HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------------C
T ss_pred -------------------------HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------------C
Confidence 33 222111 111122233455666666666655543 4
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHH-HHHHHHHHHhcCCCchHhHHHHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQ-GQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
.+...++.+..++.+.|++++|.+.|++..... +-+..++..++..+...|+.++ +..+++++.+.. |.++. +
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~----~ 271 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPF----I 271 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH----H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChH----H
Confidence 556666666666666666666666666665532 2234455555555556666543 455666655554 22222 2
Q ss_pred HHHHHhcCChHHHHHHH
Q 005732 440 VDMYSRCGSINDAQASF 456 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~ 456 (680)
.+...+.+.++++..-|
T Consensus 272 ~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 272 KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33455555566555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-15 Score=135.68 Aligned_cols=195 Identities=13% Similarity=0.045 Sum_probs=152.1
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGV 505 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 505 (680)
+++...+..+...+.+.|++++|...|++..+ .+...|..+..++.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777788888888888888888887653 45678888888888999999999999998884 454 6777888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 005732 506 LSACVRA-----------GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAVVWGALL 573 (680)
Q Consensus 506 l~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 573 (680)
...+... |++++|+..+++..+..+ .+...+..+..+|...|++++|++.+++. ....++..+..++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 8888888 999999999999997643 35778888999999999999999999987 2227888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.++...|++++|+..++++++.+|+++..+..++.++...|++++|.+.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=135.84 Aligned_cols=229 Identities=10% Similarity=0.016 Sum_probs=167.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC--CchHhHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF--ESNVYVGTSLV 440 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 440 (680)
...+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|...+..+.+... .++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 5567777788888888888888888887765 5666677777777777777777777766654320 00000
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 005732 441 DMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMK 520 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 520 (680)
.....|..+...+...|++++|+..|+++.+ ..|+.. .+...|++++|.+
T Consensus 77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELK 126 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHH
Confidence 0034556666777777777777777777776 345532 3445567788888
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 521 IFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
.++++.... +.+...+..+...+...|++++|.+.++++ . .+.+...+..++.++...|++++|+..++++++..|+
T Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 888777543 234566777788888888888888888876 2 3346788888888899999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++..+..++.++...|++++|.+.+++..+..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 98899999999999999999999999887653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=147.82 Aligned_cols=255 Identities=11% Similarity=-0.044 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC---ChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLG---SLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
..+..+...|...+.++++......+.+.-...++..+..+...|...| +.++|...++...+.| +++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 3444445555554444333333222222112222234445555555555 5555666666555555 34444334455
Q ss_pred HHHHhc----CChHHHHHHHhcCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005732 441 DMYSRC----GSINDAQASFSSISSPNVAAWTALMNG-Y--SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG 513 (680)
Q Consensus 441 ~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 513 (680)
.+|... +++++|.+.|+.....++..+..+... + ...+++++|+.+|++..+.| +...+..|...|. .|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 555433 566666666665553344555555555 3 45778888888888888766 5566666666665 44
Q ss_pred -----CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 005732 514 -----LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WM 580 (680)
Q Consensus 514 -----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 580 (680)
++++|.++|++.. . -+...+..|...|.. ..++++|.+.|++....-++.....|...|.. .+
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCC
T ss_pred CCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCC
Confidence 8888888888877 3 356666777777765 34888899988887333445556667766654 45
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHH--hcCCchHHHHHHHHHhhC
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYA--VLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 629 (680)
|.++|..+|+++.+.++.. +...+..+.. ..++..+|.++.++.++.
T Consensus 373 d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8999999999998877654 3344444432 334677788887776653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-14 Score=134.19 Aligned_cols=205 Identities=9% Similarity=-0.058 Sum_probs=146.0
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHh
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAI--DRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVY 434 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 434 (680)
.+...+..+..++...|++++|++.+++..+... .++ ...+..+...+...|++++|...++.+.+.. |+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-- 111 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-- 111 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch--
Confidence 7788999999999999999999999999877431 112 3556666666666777777777666666543 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAG 513 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 513 (680)
. ..+...|++++|...++++... .|+ ...+..+...+...|
T Consensus 112 -----------------------------~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 112 -----------------------------A-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp -----------------------------H-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------------h-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 1 2234455667777777777663 333 455666677777777
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 514 LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
++++|...++++.+.. +.+...+..+...+.+.|++++|.+.+++. .. +.+...+..++.++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888887777777543 235667777788888888888888888776 22 33577888888889999999999999999
Q ss_pred HHcCC------CCCCchHHHHHH
Q 005732 592 MFGLD------KKPISAYVILSN 608 (680)
Q Consensus 592 ~~~~~------p~~~~~~~~l~~ 608 (680)
+++.. |++...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99988 776555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-16 Score=166.29 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=112.5
Q ss_pred ccchhhHHHHHhhcCCChhHHHHhhccCC-------CCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 005732 17 LIVSTNKAITECGRNGQLVTARNLFDQMP-------IRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFST 89 (680)
Q Consensus 17 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ 89 (680)
...+||++|++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44579999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhh
Q 005732 90 ILSVCAQLNSL-IDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDEL 145 (680)
Q Consensus 90 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 145 (680)
+|.++++.|.. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999975 789999999999999999999999987776654444444443333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=132.19 Aligned_cols=250 Identities=10% Similarity=-0.044 Sum_probs=144.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 005732 317 SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR 396 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 396 (680)
.+......+...|++++|...|+++.+.+ +.+...+..+..++...|++++|++.+++..+.+..|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 70 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT 70 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch
Confidence 34445556666777777777777766654 4455567777777777777777777777776632111
Q ss_pred Ch--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHH
Q 005732 397 TR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALM 471 (680)
Q Consensus 397 ~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 471 (680)
+. ..+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|++..+ .+...|..+.
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 11 125666666666677777777776666654 34445566666666666666666666655543 2344444444
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGL---VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
..+...+++++|+..|+++.+. .|+ ...+..+...+...|+ +++|...++++.+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------------------- 208 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV------------------- 208 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-------------------
Confidence 2223334555555555555552 232 3333333333333333 33344333333311
Q ss_pred CChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 548 GHLHEAEEFIKDMPIELD------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 548 g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
. ...|+ ...+..++..+...|++++|...++++++++|+++.+...+..+....+
T Consensus 209 ---------~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 ---------C---APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ---------H---GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ---------H---hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1 11122 2467778888889999999999999999999999888877777665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.7e-14 Score=143.82 Aligned_cols=344 Identities=11% Similarity=-0.001 Sum_probs=221.2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCH---HHHHHHHhhcCCCccchhhHHHHHHHhcCCH
Q 005732 224 VIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAF---DGAMRVYDRLENPCLNASNSLINGLISMGRI 300 (680)
Q Consensus 224 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (680)
+...+.+.|++++|.+.+....+.| +...+..|...|...|+. ++|...|++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A--------------------- 64 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAA--------------------- 64 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHH---------------------
Confidence 4455556667777777776666655 222333344444444444 4555555444
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhccC-----ChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHh
Q 005732 301 EDAELIFNRLTEANSISYNSMIKGYAVYG-----QVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQ 375 (680)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~ 375 (680)
.+.+...+..+...+...+ +.++|...|++..+.+ . ...+..|...|..
T Consensus 65 ----------~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--------------~--~~A~~~Lg~~y~~ 118 (452)
T 3e4b_A 65 ----------ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--------------E--GNTLIPLAMLYLQ 118 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--------------C--SSCHHHHHHHHHH
T ss_pred ----------HhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--------------C--HHHHHHHHHHHHh
Confidence 3333334444444333333 5667777777776655 2 2356667777766
Q ss_pred CCCh---HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC---Ch
Q 005732 376 NNLH---EKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG---SI 449 (680)
Q Consensus 376 ~~~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 449 (680)
.+.. .++.+.+......| +......+...|...+.++++......+.+.-...++..+..|..+|...| +.
T Consensus 119 ~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 119 YPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp CGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccH
Confidence 5543 34555666655544 344555666666666655444433333322222333447888999999999 89
Q ss_pred HHHHHHHhcCCC---CCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHH
Q 005732 450 NDAQASFSSISS---PNVAAWTALMNGYSHH----GLGSEAVLLFEIMLEQDIVPNAATFVGVLSA-C--VRAGLVNEGM 519 (680)
Q Consensus 450 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~ 519 (680)
++|.+.|+...+ ++...+..+...|... +++++|+.+|++.. .| +...+..+... + ...+++++|.
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 999999987653 5555556777777554 78999999999987 33 34555555555 3 5689999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSG-----HLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQ 590 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 590 (680)
++|++..+.| +...+..|...|. .| ++++|.+.|++.. ..++..+..|...|.. ..+.++|..+|+
T Consensus 272 ~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 272 KYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 9999999876 6677778888887 55 9999999999998 6688888888887766 349999999999
Q ss_pred HHHcCCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 591 KMFGLDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 591 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
++.+. .++.+...|+.+|.. ..+.++|..++++..+.|.
T Consensus 347 ~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 347 TAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99875 456789999999985 4589999999999988774
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=161.11 Aligned_cols=128 Identities=11% Similarity=0.120 Sum_probs=105.7
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 005732 429 FESNVYVGTSLVDMYSRCGSINDAQASFSSIS-------SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAAT 501 (680)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 501 (680)
......+|++++++|++.|++++|.++|++|. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34566788888888888888888888886643 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 502 FVGVLSACVRAGL-VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 502 ~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
|+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999887 578889999999999999999998888776665444433333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-14 Score=134.50 Aligned_cols=241 Identities=10% Similarity=-0.113 Sum_probs=195.1
Q ss_pred hCCChHHHHHHHHHHHHCCCC---CChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHH
Q 005732 375 QNNLHEKALQLYMTMRKLAID---RTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIND 451 (680)
Q Consensus 375 ~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (680)
..|++++|++.|+++.+.... .+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457899999999999886421 135578888899999999999999999999886 6678899999999999999999
Q ss_pred HHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 005732 452 AQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSY 528 (680)
Q Consensus 452 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 528 (680)
|.+.|+++.+ .+...+..+...+...|++++|+..|+++.+ ..|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998764 4678899999999999999999999999998 4566555555555667789999999999888854
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 529 GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
. +++...+ .++..+...++.++|.+.+++. ...|+ ...+..++..+...|++++|...++++++.+|++..
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 3 3344444 4677788888999999999886 33332 577888999999999999999999999999998743
Q ss_pred HHHHHHHHHhcCCchHHHHHH
Q 005732 603 YVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~ 623 (680)
..+.++...|++++|++.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 3477888899999998876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-13 Score=126.34 Aligned_cols=227 Identities=11% Similarity=-0.030 Sum_probs=150.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYV 435 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 435 (680)
+.+..++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...+++..+.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------
Confidence 346677777777888888888888888887762 233455555555555 666666666666655543
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR 511 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 511 (680)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 ---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 73 ---------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ---------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 33344445555555 666666666666666643 45556666666666
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 005732 512 ----AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF----W 579 (680)
Q Consensus 512 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 579 (680)
.+++++|.+++++..+.+ +...+..+...|.. .+++++|.+.+++.-...++..+..+...+.. .
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 677777777777666544 44555566666666 67777777777765222345666777777777 7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 580 MNMEVGERAAQKMFGLDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 580 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
+++++|+..++++.+.+| +.++..++.+|.. .+++++|.+.+++..+.+.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888887765 5677788888887 8888888888888777653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-13 Score=133.36 Aligned_cols=248 Identities=9% Similarity=0.033 Sum_probs=207.1
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCC-hHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGS-LQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
.+...|..+...+...|++++|++.|+++.... +-+...|..+..++...|+ +++|...++++++.. +.+...|..+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 345678889999999999999999999998843 2345678888889999996 999999999999987 6788899999
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCC
Q 005732 440 VDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVR-AGL 514 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~-~g~ 514 (680)
..++...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .| +...|..+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998874 57889999999999999999999999999995 44 47788888888888 566
Q ss_pred HHHH-----HHHHHHHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 005732 515 VNEG-----MKIFRSMKSYGVVPTLEHYTCVVDLLGRSG--HLHEAEEFIKDMPIEL-DAVVWGALLSACWFWM------ 580 (680)
Q Consensus 515 ~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------ 580 (680)
.++| ++.+++..... +-+...|..+..++...| ++++|++.+.++...| +...+..++.++...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 58888888654 335778888888898888 6899999988875455 5777888888888764
Q ss_pred --C-HHHHHHHHHHH-HcCCCCCCchHHHHHHHHHhc
Q 005732 581 --N-MEVGERAAQKM-FGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 581 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 613 (680)
+ +++|+.+|+++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999988888888776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=124.42 Aligned_cols=197 Identities=10% Similarity=-0.074 Sum_probs=143.9
Q ss_pred CCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCc
Q 005732 360 ERNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSLQQGQLLHAHLVKTPFES 431 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 431 (680)
+.+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 108 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--- 108 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---
Confidence 4566788889999999 999999999999999875 66777777777777 888888888888877654
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLS 507 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 507 (680)
++..+. .+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 109 ~~~a~~-------------------------------~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 109 YAEGCA-------------------------------SLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp CHHHHH-------------------------------HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred CccHHH-------------------------------HHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 333333 44444555 666677777777776654 4455556666
Q ss_pred HHhc----cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 005732 508 ACVR----AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF- 578 (680)
Q Consensus 508 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 578 (680)
.+.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|.+.+++.-...+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 6665 777777777777777653 45666677777777 78888888887776212236677778888887
Q ss_pred ---cCCHHHHHHHHHHHHcCCCCC
Q 005732 579 ---WMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 579 ---~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.+++++|...++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 889999999999998888765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-13 Score=125.65 Aligned_cols=197 Identities=10% Similarity=-0.021 Sum_probs=155.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566677777777888888877776652 456777788888888888888888888888743 22567777788888
Q ss_pred hccCCHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
...|++++|.++++++...+..| +...+..+...+...|++++|.+.++++ .. +.+...+..++..+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887632333 4566777888888889999998888876 22 335778888888888999999999
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 587 RAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..++++++..|+++..+..++.++...|++++|.+.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999888888889999999999999999998887754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=123.24 Aligned_cols=207 Identities=14% Similarity=-0.004 Sum_probs=115.1
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
|++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677788888888888999999999988887743 2345567777777777888888888887777765 5555666666
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A 518 (680)
..++...+.. ... .....|++++|+..|++..+. .|+ ...+..+...+...|++++|
T Consensus 80 g~~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 80 SEAYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHH
Confidence 6666655000 000 001125555555555555552 333 44455555555556666666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKM 592 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 592 (680)
+..|++..+.. .+...+..+..+|...|++++|+..+++. ...| ++..+..+...+...|++++|+..++++
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666555444 45555555555666666666666655554 2223 4555555555555666666666655554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=120.34 Aligned_cols=200 Identities=15% Similarity=0.035 Sum_probs=153.9
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVL 506 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 506 (680)
+.+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|...++++.+.. ..+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34555666677777777777777777776542 456677778888888888888888888887743 22567777788
Q ss_pred HHHhcc-CCHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005732 507 SACVRA-GLVNEGMKIFRSMKSYGVVPT-LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNM 582 (680)
Q Consensus 507 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 582 (680)
..+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++ ...| +...+..++..+...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 888888 888888888888886322232 566777888888888888888888876 3333 577888888888889999
Q ss_pred HHHHHHHHHHHcCCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 583 EVGERAAQKMFGLDK-KPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999888 887888888888888999999998888887543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=127.62 Aligned_cols=144 Identities=15% Similarity=0.032 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...+..+...+...|++++|+..++++.+.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3444445555555555555555555555532 1234445555555555566666666555555432 2234445555555
Q ss_pred HHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
+.+.|++++|.+.++++ . .+.+...+..++.++...|++++|...++++++..|+++..+..++.+
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 55555555555555544 1 122345555555555555666666666666666555555444444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-13 Score=132.59 Aligned_cols=226 Identities=10% Similarity=0.026 Sum_probs=195.2
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCC-hHHHHHHHhcCCC---CCHHHHHHHHHHH
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGS-INDAQASFSSISS---PNVAAWTALMNGY 474 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 474 (680)
..|..+...+...|++++|...++.+++.. +.+...|..+..++...|+ +++|++.|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667778888999999999999999987 7788899999999999997 9999999998874 5778999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cCChHH
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR-SGHLHE 552 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 552 (680)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.+... -+...|+.+..++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999994 45 578899999999999999999999999997653 378889999999999 666688
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC--------C
Q 005732 553 A-----EEFIKDM-PIEL-DAVVWGALLSACWFWM--NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG--------K 615 (680)
Q Consensus 553 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~ 615 (680)
| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++.+|.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777766 4455 6788999998888877 699999999998 999999999999999999975 2
Q ss_pred -chHHHHHHHHH-hhC
Q 005732 616 -WGKKMDIRKRL-THL 629 (680)
Q Consensus 616 -~~~A~~~~~~~-~~~ 629 (680)
.++|+++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 58999999998 554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=116.83 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVV 541 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 541 (680)
++..|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 5667888899999999999999999999884 45 47788888889999999999999999988654 33566777788
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
..+...++++.|.+.+++. .. +.+...+..++..+...|++++|+..++++++.+|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999887 33 346888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 005732 620 MDIRKRLTHLEV 631 (680)
Q Consensus 620 ~~~~~~~~~~~~ 631 (680)
.+.+++..+..+
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 999999887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=125.99 Aligned_cols=197 Identities=13% Similarity=0.100 Sum_probs=154.7
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA 508 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 508 (680)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. ..+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566666777777888887777776643 456788888889999999999999999998853 2357888889999
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++ . .+.+...+..++..+...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999754 346778889999999999999999999987 3 3446888999999999999999999
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 587 RAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999998754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=121.47 Aligned_cols=207 Identities=9% Similarity=-0.020 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDM 442 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 442 (680)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4556666677777777777777777766542 2233344444444445555555555554444332
Q ss_pred HHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 005732 443 YSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
..+...+..+...+...|++++|+++++++.+.+..|+ ...+..+...+...|++++|.+.
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 13445566666777777777777777777766333443 55666777778888888888888
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 522 FRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
++++.+.. +.+...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|..+++++.+..|++
T Consensus 164 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 164 FEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 88887654 335677778888888888888888888876 33 3467778888888889999999999999999999998
Q ss_pred CchH
Q 005732 600 ISAY 603 (680)
Q Consensus 600 ~~~~ 603 (680)
+...
T Consensus 243 ~~~~ 246 (252)
T 2ho1_A 243 LEYQ 246 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-13 Score=127.20 Aligned_cols=236 Identities=9% Similarity=-0.028 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHH
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMY 443 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (680)
..+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.+ ++...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------- 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA-------- 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC--------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH--------
Confidence 344556667777777777777777776643 1223355556666666666666666666665522 11111
Q ss_pred HhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005732 444 SRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFR 523 (680)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 523 (680)
....|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|.+.++
T Consensus 73 -------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 73 -------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred -------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 123455666677777777777777777776331 135677777777888888888888888
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCC--
Q 005732 524 SMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMN---MEVGERAAQKMFGLD-- 596 (680)
Q Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-- 596 (680)
+..+.. +.+...+..+...+...+++++|.+.++++ ...| +...+..+..++...|+ +++|...++++++..
T Consensus 133 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 133 KQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp GGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred HHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 777542 334556666663444455888888888876 3334 47777778888888888 888999999998875
Q ss_pred -CCC-----CchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 597 -KKP-----ISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 597 -p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
|++ ..++..++.+|...|++++|.+.+++..+..+
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 442 25788899999999999999999999987643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=138.85 Aligned_cols=267 Identities=11% Similarity=0.037 Sum_probs=210.4
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHhcccCChHHHHHHHHHHHhc----C-CCchH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR----STFSVLFHACSCLGSLQQGQLLHAHLVKT----P-FESNV 433 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 433 (680)
...+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556777899999999999999999886422 22 46778888999999999999999988764 1 13445
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---------CCHHHHHHHHHHHHHcCC-----------------hhHHHHHH
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISS---------PNVAAWTALMNGYSHHGL-----------------GSEAVLLF 487 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 487 (680)
..+..+...|...|++++|.+.+++..+ ....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788889999999999999999987653 124478888899999999 99999999
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHHH
Q 005732 488 EIMLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PT----LEHYTCVVDLLGRSGHLHEAEEFI 557 (680)
Q Consensus 488 ~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 557 (680)
++..+. +-.|. ..++..+...+...|++++|.+.+++..+.... .+ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887652 11122 347778888999999999999999998742211 12 237788899999999999999999
Q ss_pred HhC-C---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHHHHH
Q 005732 558 KDM-P---IEL----DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKMDIR 623 (680)
Q Consensus 558 ~~~-~---~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 623 (680)
++. . ... ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 876 1 111 25677888889999999999999999999875543 347889999999999999999999
Q ss_pred HHHhhCC
Q 005732 624 KRLTHLE 630 (680)
Q Consensus 624 ~~~~~~~ 630 (680)
++..+..
T Consensus 367 ~~al~~~ 373 (411)
T 4a1s_A 367 EQHLQLA 373 (411)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9987643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=140.14 Aligned_cols=193 Identities=9% Similarity=-0.016 Sum_probs=156.3
Q ss_pred CchHhHHHHHHHHHHhcCCh-HHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSI-NDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGV 505 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 505 (680)
+.+...+..+...+...|++ ++|++.|++..+ .+...|..+..+|...|++++|+..|++..+ ..|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHH
Confidence 34555555666666666666 666666665542 3466777888888888888899999988888 45777788888
Q ss_pred HHHHhcc---------CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC---
Q 005732 506 LSACVRA---------GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS--------GHLHEAEEFIKDM-PIEL--- 564 (680)
Q Consensus 506 l~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 564 (680)
...+... |++++|++.++++.+.. +.+...|..+..+|... |++++|++.+++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 8888888 89999999999988654 33577888888888888 8999999999987 3344
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005732 565 -DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
++..+..++.++...|++++|...|+++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999999999999999999999999999999999999976544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-12 Score=116.73 Aligned_cols=212 Identities=9% Similarity=-0.035 Sum_probs=144.4
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSL 439 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (680)
+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~--------- 73 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-P--------- 73 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T---------
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C---------
Confidence 4456677777778888888888888888776643 2234445555555555555555555555554432 1
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHH-GLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNE 517 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~ 517 (680)
.+...+..+...+... |++++|+..++++.+.+..|+ ...+..+...+...|++++
T Consensus 74 ----------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 74 ----------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp ----------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 2344555666667777 777777777777776333343 4566677777778888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 518 GMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-E-LDAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 518 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
|...++++.+.. +.+...+..+...+.+.|++++|.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 132 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 132 AEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888777543 234667777888888888888888888876 22 3 4566676777777889999999999999988
Q ss_pred CCCCCCchHHH
Q 005732 595 LDKKPISAYVI 605 (680)
Q Consensus 595 ~~p~~~~~~~~ 605 (680)
..|+++.....
T Consensus 211 ~~p~~~~~~~~ 221 (225)
T 2vq2_A 211 NFPYSEELQTV 221 (225)
T ss_dssp HCTTCHHHHHH
T ss_pred hCCCCHHHHHH
Confidence 89988665543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=133.74 Aligned_cols=269 Identities=14% Similarity=0.076 Sum_probs=212.6
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhc----CC-C
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PF-E 430 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~ 430 (680)
......+......+...|++++|...|+++.+.+. .+ ...+..+...+...|++++|...++.+.+. +. +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 45666778888899999999999999999988632 22 246778888999999999999999987653 21 2
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----HHHHHHHHHHHHHcCC--------------------hh
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PN----VAAWTALMNGYSHHGL--------------------GS 481 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~ 481 (680)
....++..+...+...|++++|...+++..+ ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2356778889999999999999999987763 22 4478888899999999 99
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCC----hhHHHHHHHHHHhcCChH
Q 005732 482 EAVLLFEIMLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGV-VPT----LEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 482 ~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 551 (680)
+|+..+++..+. +..|. ..++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887642 21222 35677888889999999999999998873211 112 337788899999999999
Q ss_pred HHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCch
Q 005732 552 EAEEFIKDM-P---IELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 552 ~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 617 (680)
+|.+.+++. . ..++ ..++..++..+...|++++|...++++++..+.. +.++..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999876 1 1122 5577888889999999999999999999875544 457889999999999999
Q ss_pred HHHHHHHHHhhC
Q 005732 618 KKMDIRKRLTHL 629 (680)
Q Consensus 618 ~A~~~~~~~~~~ 629 (680)
+|.+.+++..+.
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=139.84 Aligned_cols=288 Identities=14% Similarity=0.052 Sum_probs=203.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 317 SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN----PVTWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
.+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--------------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44455566667777777777777666543 223 345677777788888888888887776432
Q ss_pred ----CCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHhcC----C-CchHhHHHHHHHHHHhcCC--------------
Q 005732 393 ----AIDRT-RSTFSVLFHACSCLGSLQQGQLLHAHLVKTP----F-ESNVYVGTSLVDMYSRCGS-------------- 448 (680)
Q Consensus 393 ----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~-------------- 448 (680)
+..|. ..++..+...+...|++++|...+....+.. . .....++..+...|...|+
T Consensus 77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 11121 3356667777778888888888777766531 0 1124467777888888888
Q ss_pred ------hHHHHHHHhcCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 005732 449 ------INDAQASFSSISS-----P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPN----AATFVGVLSA 508 (680)
Q Consensus 449 ------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~ 508 (680)
+++|.+.+++..+ . ...++..+...+...|++++|+..+++..+... .++ ..++..+...
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 8888887766542 1 234677888889999999999999988875210 122 3367788888
Q ss_pred HhccCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVV-PT----LEHYTCVVDLLGRSGHLHEAEEFIKDM----PIELD----AVVWGALLSA 575 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~ 575 (680)
+...|++++|...+++....... .+ ..++..+...|...|++++|.+.+++. +..++ ..++..+...
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999988732111 11 556778889999999999999998876 11122 5577888889
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCC------CCchHHHHHHHHHhcCCchH
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKK------PISAYVILSNIYAVLGKWGK 618 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~ 618 (680)
+...|++++|...++++++..+. ...++..++.++...|+...
T Consensus 317 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999999999999887433 24568889999999887643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=129.07 Aligned_cols=267 Identities=14% Similarity=0.074 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhc----CC-CchH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PF-ESNV 433 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 433 (680)
...+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...++...+. +. +...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34456667788999999999999999988642 22 256778888999999999999999887653 21 2335
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----HHHHHHHHHHHHHcCC--------------------hhHHH
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISS-----PN----VAAWTALMNGYSHHGL--------------------GSEAV 484 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~ 484 (680)
.++..+...+...|++++|.+.+++..+ ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788889999999999999999987653 22 3478888889999999 99999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCC----hhHHHHHHHHHHhcCChHHHH
Q 005732 485 LLFEIMLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGV-VPT----LEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 485 ~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~ 554 (680)
..+++.... +..|. ...+..+...+...|++++|.+.+++..+... .++ ...+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887642 11121 34677788889999999999999998873211 111 337788889999999999999
Q ss_pred HHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHH
Q 005732 555 EFIKDM-P---IELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKM 620 (680)
Q Consensus 555 ~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 620 (680)
+.+++. . ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999876 1 1122 5567788888999999999999999998876543 337889999999999999999
Q ss_pred HHHHHHhhCC
Q 005732 621 DIRKRLTHLE 630 (680)
Q Consensus 621 ~~~~~~~~~~ 630 (680)
+.+++..+..
T Consensus 324 ~~~~~a~~~~ 333 (338)
T 3ro2_A 324 HFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999988753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-13 Score=126.23 Aligned_cols=187 Identities=12% Similarity=-0.015 Sum_probs=104.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV 364 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (680)
..++..+...|++++|...|++... .+..++..+...+...|++++|...|+++.+.+ +.+..
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~ 112 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------------PTYNY 112 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCTH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------ccccH
Confidence 3444444444555555555544443 234455666666666666666666666665544 44566
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
.+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+....... +++...+. ++..+.
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~ 188 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYL 188 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHH
Confidence 6777777777777777777777777663 3444443444444455566677776666655543 33333332 444455
Q ss_pred hcCChHHHHHHHhcCCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 445 RCGSINDAQASFSSISSPN-------VAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
..++.++|.+.++.....+ ...|..+...+...|++++|...|+++.+
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555566666665554321 24455555566666666666666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=133.00 Aligned_cols=268 Identities=12% Similarity=0.001 Sum_probs=204.4
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005732 317 SYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP----VTWNSMISGYVQNNLHEKALQLYMTMRKL 392 (680)
Q Consensus 317 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 392 (680)
.+..+...+...|++++|...|+++.+.+ +.+. ..|..+...|...|++++|.+.+++..+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--------------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--------------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34456667788888888888888887754 3333 46888888999999999999999887653
Q ss_pred ----CCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHhc----C-CCchHhHHHHHHHHHHhcCC--------------
Q 005732 393 ----AIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----P-FESNVYVGTSLVDMYSRCGS-------------- 448 (680)
Q Consensus 393 ----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-------------- 448 (680)
+..| ....+..+...+...|++++|...+.++.+. + .+....++..+...|...|+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 1112 2346777888889999999999999887764 1 13345577888889999999
Q ss_pred ---hHHHHHHHhcCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhc
Q 005732 449 ---INDAQASFSSISS-----P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-PN----AATFVGVLSACVR 511 (680)
Q Consensus 449 ---~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~ 511 (680)
+++|.+.+++..+ . ....+..+...+...|++++|+..+++..+.... ++ ...+..+...+..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 8999888877642 1 2347788889999999999999999998763110 12 2367888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHh
Q 005732 512 AGLVNEGMKIFRSMKSYGVV-----PTLEHYTCVVDLLGRSGHLHEAEEFIKDMP----IEL----DAVVWGALLSACWF 578 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~ 578 (680)
.|++++|.+.+++....... ....++..+...|...|++++|.+++++.- ..+ ...++..+...+..
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 99999999999988732211 114677888999999999999999998761 111 24577888889999
Q ss_pred cCCHHHHHHHHHHHHcCCCC
Q 005732 579 WMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~ 598 (680)
.|++++|...+++++++.+.
T Consensus 356 ~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCH
T ss_pred hccHHHHHHHHHHHHHHHhh
Confidence 99999999999999988765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-12 Score=135.38 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
..+|+.|...+.+.|++++|++.|++..+ +.|+ ...+..+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45778888888889999999999998888 4565 7788888888999999999999999888754 235778888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHH
Q 005732 543 LLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKM 620 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (680)
+|.+.|++++|++.+++. ...| +...+..++.++...|++++|+..|+++++++|+++.++..++.+|...|+|++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999887 4455 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 005732 621 DIRKRLTH 628 (680)
Q Consensus 621 ~~~~~~~~ 628 (680)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=126.90 Aligned_cols=268 Identities=12% Similarity=0.035 Sum_probs=197.3
Q ss_pred HHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC-
Q 005732 318 YNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN----PVTWNSMISGYVQNNLHEKALQLYMTMRKL- 392 (680)
Q Consensus 318 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~- 392 (680)
+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|.+.+++....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4445666778888888888888877754 333 356778888999999999999998887542
Q ss_pred ---CCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHhc----CC-CchHhHHHHHHHHHHhcCC---------------
Q 005732 393 ---AIDR-TRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PF-ESNVYVGTSLVDMYSRCGS--------------- 448 (680)
Q Consensus 393 ---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~--------------- 448 (680)
+..| ....+..+...+...|++++|...+.+..+. +. .....++..+...+...|+
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 2122 2346777788888999999999998887653 11 1123467788888999999
Q ss_pred -----hHHHHHHHhcCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q 005732 449 -----INDAQASFSSISS-----P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPN----AATFVGVLSAC 509 (680)
Q Consensus 449 -----~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~ 509 (680)
+++|.+.+++..+ + ....+..+...+...|++++|...+++..+... .++ ..++..+...+
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 8888888876542 1 234677888899999999999999998875310 111 33677888889
Q ss_pred hccCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVV-PT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IELD----AVVWGALLSAC 576 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~ 576 (680)
...|++++|.+.+++....... .+ ..++..+...+...|++++|.+.+++. . ...+ ..++..+...+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999999988732111 11 556778889999999999999999876 1 1112 45677888899
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCC
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
...|++++|...+++++++.+..
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC----
T ss_pred HHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-12 Score=125.58 Aligned_cols=233 Identities=7% Similarity=-0.035 Sum_probs=120.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhcCC-CchHhHHHHHHHH
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAI-DRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF-ESNVYVGTSLVDM 442 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 442 (680)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+.+..+... .++..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-------- 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------
Confidence 55667888999999999998876311 122 23566666666777777777777666554210 00000
Q ss_pred HHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHH
Q 005732 443 YSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPN----AATFVGVLSACVRAGLVNE 517 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~ 517 (680)
.....+++.+...|...|++++|+..+++..+... .++ ..++..+...|...|++++
T Consensus 181 ------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 181 ------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 00012334444444555555555555544443100 011 1244445555555555555
Q ss_pred HHHHHHHHHhc----CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-----CCC-CHHHHHHHHHHHHhcCC---H
Q 005732 518 GMKIFRSMKSY----GV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-----IEL-DAVVWGALLSACWFWMN---M 582 (680)
Q Consensus 518 A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p-~~~~~~~l~~~~~~~g~---~ 582 (680)
|.+.+++..+. +. +....++..+...|.+.|++++|.+.+++. . ..| ....+..+...+...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 55555555431 11 222444555555555555555555555543 1 011 11223444445555565 5
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
++|..++++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 323 ~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 323 QGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555554 22233334566677777777777777777766654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-09 Score=114.28 Aligned_cols=417 Identities=9% Similarity=-0.028 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCC---HHHHHHH
Q 005732 199 EKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEA---FDGAMRV 275 (680)
Q Consensus 199 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 275 (680)
.+.+..|++.+..+.. |..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.+. ++.+..+
T Consensus 49 ~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 3344445555554432 7777777777777777777777777777766 35566677777777777777 7788888
Q ss_pred HhhcC--C---CccchhhHHHHHHHhcCCH--------HHHHHHHHHhcc------C-ChhHHHHHHHHHh---------
Q 005732 276 YDRLE--N---PCLNASNSLINGLISMGRI--------EDAELIFNRLTE------A-NSISYNSMIKGYA--------- 326 (680)
Q Consensus 276 ~~~~~--~---~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~------~-~~~~~~~ll~~~~--------- 326 (680)
|++.. - +++..|...+.-..+.++. +...++|+.... + +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 87776 2 5555555555444443332 223355555432 2 2235555554432
Q ss_pred ccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHH---HHHH----------HhCCChHHHHHHHHHHHH--
Q 005732 327 VYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSM---ISGY----------VQNNLHEKALQLYMTMRK-- 391 (680)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l---i~~~----------~~~~~~~~A~~~~~~m~~-- 391 (680)
..++++.+..+|++++..... .-..+|... ...+ -...+++.|...+.++..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~-------------~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMD-------------CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCS-------------SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHhCccH-------------HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 233467788888888753211 011122111 1110 001123344455544322
Q ss_pred CCCC---CC-------------h-------hhHHHHHHHhcccC-------ChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 392 LAID---RT-------------R-------STFSVLFHACSCLG-------SLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 392 ~~~~---p~-------------~-------~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
.++. |. . ..|...+.---..+ ..+.+..+|++.+... +..+..|...+.
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~ 351 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMAN 351 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 1111 10 0 12222222211111 1234556677776653 556777777777
Q ss_pred HHHhcCChHHHH-HHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---------CCC----------
Q 005732 442 MYSRCGSINDAQ-ASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---------VPN---------- 498 (680)
Q Consensus 442 ~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---------~p~---------- 498 (680)
.+...|+.++|. ++|++... .+...|...+...-+.|+++.|..+|+++.+... .|+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 777888888886 88877653 3555677777777888888888888888876310 132
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005732 499 --AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS-GHLHEAEEFIKDM--PIELDAVVWGALL 573 (680)
Q Consensus 499 --~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~ 573 (680)
...|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+.. ..+.++..+...+
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~ 511 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 2356666676677888888888888888641122334444333333344 4588888888876 2334566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCC---CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKK---PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
......|+.+.|..+|+++++..|+ ....|...+..-...|+.+.+.++.+++.+.-+.
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7777788889999999988888774 3345777777777888888888888888876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=127.00 Aligned_cols=188 Identities=8% Similarity=-0.066 Sum_probs=140.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--C---CC-CHHHHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISS-----P----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD--I---VP-NAATFV 503 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~---~p-~~~~~~ 503 (680)
....+...|++++|.+.|++..+ + ...++..+...|...|++++|+..+++..+.- . .| ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44555666777777776665532 2 23567778888888899999988888877521 1 11 145788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVV-PT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIEL-DAVVWG 570 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~ 570 (680)
.+...|...|++++|.+.+++..+.... ++ ..++..+..+|...|++++|.+.+++. ...| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988833111 11 247888999999999999999998876 2214 466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCC-----CCCchHHHHHHHHHhcCC---chHHHHHHHHH
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFGLDK-----KPISAYVILSNIYAVLGK---WGKKMDIRKRL 626 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 626 (680)
.++..+...|++++|...++++++..+ .....+..++.++...|+ +++|..++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 899999999999999999999998743 333346779999999999 88888887765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-09 Score=112.45 Aligned_cols=228 Identities=8% Similarity=-0.024 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHH-HHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHH
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKAL-QLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTS 438 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (680)
+.+...|...+..+...|+.++|. ++|++.... ++.+...+...+......|+++.|..+|+.+++... ..+..
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~----~~~~~ 414 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH----LDLAA 414 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHhhh
Confidence 456677777777777777777775 777777653 233444455556666667777777777776654310 00000
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCCHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ-DIVPNAATFVGVLSACVR-AGLVN 516 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-~g~~~ 516 (680)
+-.. ....+.. .+.........|...+....+.|+.+.|..+|.++.+. +. +....|...+..-.+ .++++
T Consensus 415 ~~~~---~p~~~~~---~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 415 LMED---DPTNESA---INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHH---STTCHHH---HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCH
T ss_pred hhhc---cCcchhh---hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHH
Confidence 0000 0000000 00000012336777777777888899999999999875 21 123333322222223 35689
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005732 517 EGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL----DAVVWGALLSACWFWMNMEVGERAAQK 591 (680)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 591 (680)
.|.++|+...+. .+.+...+..+++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.++
T Consensus 488 ~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 488 TACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999865 4456777788888888899999999999987 3233 345677777777889999999999999
Q ss_pred HHcCCCCCC
Q 005732 592 MFGLDKKPI 600 (680)
Q Consensus 592 ~~~~~p~~~ 600 (680)
+.+..|+++
T Consensus 567 ~~~~~P~~~ 575 (679)
T 4e6h_A 567 FFEKFPEVN 575 (679)
T ss_dssp HHHHSTTCC
T ss_pred HHHhCCCCc
Confidence 999999974
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=107.82 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=138.1
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSA 508 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 508 (680)
++.+|..+...|.+.|++++|++.|++..+ .+...|..+..++.+.|++++|+..+.+...... .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 456777888888888888888888887653 4677888888899999999999999999887432 246667777788
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
+...++++.|.+.+.+..... +.+...+..+..+|.+.|++++|++.+++. ...| ++..+..++.++...|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 888999999999999988654 346778888999999999999999999987 3344 6888999999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 005732 587 RAAQKMFGLDKKP 599 (680)
Q Consensus 587 ~~~~~~~~~~p~~ 599 (680)
..|+++++.+|++
T Consensus 162 ~~~~~al~~~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHhCCccC
Confidence 9999999999976
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-11 Score=114.42 Aligned_cols=217 Identities=8% Similarity=0.044 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhc-------ccCCh-------HHHHHHHHHHHhcCCCchHhHHHHHHHHHHh
Q 005732 380 EKALQLYMTMRKLAIDRTRSTFSVLFHACS-------CLGSL-------QQGQLLHAHLVKTPFESNVYVGTSLVDMYSR 445 (680)
Q Consensus 380 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (680)
++|...|++..... +.+...|..+...+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776632 234445555555543 23554 6666666666663114445556666666666
Q ss_pred cCChHHHHHHHhcCCC--C-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 005732 446 CGSINDAQASFSSISS--P-NVA-AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC-VRAGLVNEGMK 520 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~ 520 (680)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665543 2 122 566666666666666666666666665321 1223332222211 12466666666
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 521 IFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IEL--DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+|++..+.. +.+...|..++..+.+.|++++|..+|++. . .+| ....|..++......|+.+.|..+++++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666655432 224555555555555666666666666554 1 133 244555555555556666666666666666
Q ss_pred CCCCC
Q 005732 595 LDKKP 599 (680)
Q Consensus 595 ~~p~~ 599 (680)
..|++
T Consensus 270 ~~p~~ 274 (308)
T 2ond_A 270 AFREE 274 (308)
T ss_dssp HTTTT
T ss_pred Hcccc
Confidence 66554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-11 Score=109.65 Aligned_cols=164 Identities=12% Similarity=-0.058 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+.... +...+..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 3444444444555555555555555544322234444444444445555555555555555433211 334444455555
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC--CCchHHHHHHHHHhc
Q 005732 545 GRSGHLHEAEEFIKDM-PIEL-DA-------VVWGALLSACWFWMNMEVGERAAQKMFGLDKK--PISAYVILSNIYAVL 613 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~ 613 (680)
...|++++|++.+++. ...| +. ..+..++..+...|++++|+..++++++.+|+ ++.++..++.+|...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 5555555555555444 1222 22 23444444555555555555555555555555 555555555555555
Q ss_pred CCc---------------------------hHHHHHHHHHhhC
Q 005732 614 GKW---------------------------GKKMDIRKRLTHL 629 (680)
Q Consensus 614 g~~---------------------------~~A~~~~~~~~~~ 629 (680)
|+. ++|...+++..+.
T Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 167 GADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 554 9999999998875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-10 Score=108.66 Aligned_cols=215 Identities=9% Similarity=-0.002 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHh-------cCCh-------HHHHHHHhcCCC----CCHHHHHHHHHHHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSR-------CGSI-------NDAQASFSSISS----PNVAAWTALMNGYSH 476 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 476 (680)
++|..+|+++++.. +.++..|..++..+.. .|++ ++|..+|++..+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888865 6777788888777753 5886 899999987654 356689999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCChHHH
Q 005732 477 HGLGSEAVLLFEIMLEQDIVPN-AA-TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG-RSGHLHEA 553 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 553 (680)
.|++++|..+|+++.+ +.|+ .. .|..++..+.+.|++++|..+|++..+... .+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998 4565 33 788899999999999999999999997543 34555554443322 37999999
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC---CCC-CCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 554 EEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGL---DKK-PISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 554 ~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.++|++. .. +.++..|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 32 336888999999999999999999999999996 553 55678899999999999999999999998
Q ss_pred hCCCcc
Q 005732 628 HLEVKK 633 (680)
Q Consensus 628 ~~~~~~ 633 (680)
+..+..
T Consensus 269 ~~~p~~ 274 (308)
T 2ond_A 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHcccc
Confidence 876543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-11 Score=106.44 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=96.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
+...+...|++++|+..++++.+.. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 3344444444444444444443321 1123444444444444555555555555444332 2234445555555555566
Q ss_pred hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 550 LHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 550 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
+++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|+++..+..++.++...|++++|.+.+++..
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666655554 1 233566777777778888888888888888888888888888888888888888888888888877
Q ss_pred hCC
Q 005732 628 HLE 630 (680)
Q Consensus 628 ~~~ 630 (680)
+..
T Consensus 172 ~~~ 174 (186)
T 3as5_A 172 ELD 174 (186)
T ss_dssp HHH
T ss_pred HcC
Confidence 654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=124.15 Aligned_cols=244 Identities=11% Similarity=0.031 Sum_probs=127.0
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc-----
Q 005732 360 ERNPVTWNSMISGYVQNNLHEKALQLYMTMRKL-------AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----- 427 (680)
Q Consensus 360 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 427 (680)
+.+..++..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...++.+.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445677888999999999999999999998763 12223445666777777788888888777776653
Q ss_pred -C-CCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-
Q 005732 428 -P-FESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ- 493 (680)
Q Consensus 428 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~- 493 (680)
+ .+.....+..+...|...|++++|.+.++++.+ .....+..+...+...|++++|+.+++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 122344455555566666666666655544331 01223444444455555555555555544432
Q ss_pred -----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 494 -----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYG-------VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 494 -----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
+..|. ..++..+...+...|++++|.+.++++.+.. ..+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------------- 242 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM--------------------- 242 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH---------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH---------------------
Confidence 11121 2234444444444555555555444444210 0000000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 561 PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 561 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
....+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 ----HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222222334455666666677777777777777777777778778888888777777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-12 Score=124.01 Aligned_cols=162 Identities=14% Similarity=0.049 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhc------CC-C
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQ------DIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSY------GV-V 531 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~-~ 531 (680)
.+..+...+...|++++|+..++++.+. +-.| ....+..+...+...|++++|.+.++++.+. +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444555555555566665555555442 1112 2445566666667777777777777666632 11 2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC------
Q 005732 532 PTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI--------EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGL------ 595 (680)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 595 (680)
.....+..+...+...|++++|.++++++ .. .| ....+..++..+...|++++|...++++++.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23445666677777777777777776665 11 22 2445677777788888888888888888764
Q ss_pred ---CCCCCchHH------HHHHHHHhcCCchHHHHHHHHHh
Q 005732 596 ---DKKPISAYV------ILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 596 ---~p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.+.....+. .++..+...+.+.+|...+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 233333333 33444455566666555555544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-09 Score=108.51 Aligned_cols=265 Identities=11% Similarity=0.020 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHhcccCChHHHHHHHHHHHhcCC---Cc--hHhH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS----TFSVLFHACSCLGSLQQGQLLHAHLVKTPF---ES--NVYV 435 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 435 (680)
........+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+... .+ ...+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445556778999999999999988754222222 455666778889999999999998875310 11 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC----------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C--CHH
Q 005732 436 GTSLVDMYSRCGSINDAQASFSSISS----------P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIV--P--NAA 500 (680)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~ 500 (680)
+..+...+...|++++|.+.+++... | ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 56778889999999999999887642 1 1345667888899999999999999998863221 1 245
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-hhHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT-LEHYT-----CVVDLLGRSGHLHEAEEFIKDMP-IELD-----AVV 568 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 568 (680)
++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999999874321211 11222 23345779999999999999872 2221 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+..+...+...|++++|...+++++...+.. ...+..++.++...|++++|.+.+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6677788889999999999999998765432 236778899999999999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-10 Score=115.54 Aligned_cols=236 Identities=7% Similarity=-0.016 Sum_probs=122.1
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCh
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAID-RTR 398 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~ 398 (680)
.....+...|++++|...|+++.+......+ .+....++..+...|...|+++.|+..+++..+.... ++.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSD--------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC--------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence 3445566778888888887776653210000 0112446677777788888888888877776542100 000
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----C----CHHHHHH
Q 005732 399 STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----P----NVAAWTA 469 (680)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~ 469 (680)
. .....+++.+...|...|++++|.+.|++..+ + ...++..
T Consensus 178 ~------------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 227 (378)
T 3q15_A 178 S------------------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227 (378)
T ss_dssp H------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred h------------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 00122333344444444444444444433221 1 1234555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC----CCChhHHHHH
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLE-----QDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGV----VPTLEHYTCV 540 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l 540 (680)
+..+|...|++++|+..+++..+ .... ...++..+...+.+.|++++|...+++..+... +.....+..+
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666667777666666655 2211 245566666677777777777777776663211 1112233444
Q ss_pred HHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 541 VDLLGRSGH---LHEAEEFIKDMPIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 541 ~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
...+...|+ +.+|+.++++.+..|+ ...+..++..+...|++++|...++++++
T Consensus 307 ~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 307 QAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555 5666666665533222 22334455555555666666555555543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-10 Score=104.93 Aligned_cols=205 Identities=7% Similarity=-0.021 Sum_probs=147.7
Q ss_pred CChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHH
Q 005732 396 RTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMN 472 (680)
Q Consensus 396 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 472 (680)
.++..+......+...|++++|...++...+...+++...+..+..++...|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355677778888888899999999999888876436667777788888888999999888887653 34567888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--ChhHHHHHHH
Q 005732 473 GYSHHGLGSEAVLLFEIMLEQDIVPN-A-------ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP--TLEHYTCVVD 542 (680)
Q Consensus 473 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 542 (680)
++...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.|+++.+.. +. +...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 888888899999888888873 344 3 346667777788888888888888888643 12 2456666777
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 543 LLGRSGHLHEAEEFIKDMP--IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+|...|+. +++++. ...+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77655432 223221 122344443333 33456789999999999999999987777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.9e-11 Score=121.34 Aligned_cols=213 Identities=13% Similarity=0.037 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCCh-hhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHH
Q 005732 198 CEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAF-CEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVY 276 (680)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (680)
+++++..+++..... |.+...+..+...+...|++ ++|...++..++..
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---------------------------- 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---------------------------- 133 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------------------
Confidence 455555555443322 22445555555555555555 55555555555543
Q ss_pred hhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--CChhHHHHHHHHHhcc---------CChhhHHHHHhhcCcCC
Q 005732 277 DRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE--ANSISYNSMIKGYAVY---------GQVDDSKRLFEKMPHRS 345 (680)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~ 345 (680)
+.+...+..+..+|...|++++|...|++... |+...+..+...+... |++++|...|+++.+.+
T Consensus 134 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 134 ----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 33334445555666666666666666666655 6666777888888888 99999999999988876
Q ss_pred cchhhhHhhhcccCCCChhHHHHHHHHHHhC--------CChHHHHHHHHHHHHCCCC--CChhhHHHHHHHhcccCChH
Q 005732 346 IISLNTMISVIPEMERNPVTWNSMISGYVQN--------NLHEKALQLYMTMRKLAID--RTRSTFSVLFHACSCLGSLQ 415 (680)
Q Consensus 346 ~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~ 415 (680)
+.+...|..+..+|... |++++|++.|++..+.... .+...+..+..++...|+++
T Consensus 210 --------------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~ 275 (474)
T 4abn_A 210 --------------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275 (474)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHH
T ss_pred --------------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 67788999999999988 8899999999999875311 35667777888888888888
Q ss_pred HHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcC
Q 005732 416 QGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSI 459 (680)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (680)
+|...+++..+.. +.+...+..+..++...|++++|.+.+..+
T Consensus 276 ~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 276 EALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888887765 555666777777777777777777666554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-10 Score=113.63 Aligned_cols=228 Identities=10% Similarity=0.003 Sum_probs=158.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhc
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAI-DRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRC 446 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (680)
.....+...|++++|+..|++..+... .++.. ....++..+...|...
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDI-------------------------------EKAEFHFKVAEAYYHM 154 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-------------------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChH-------------------------------HHHHHHHHHHHHHHHc
Confidence 344556778888888888888765311 11110 1122344445555555
Q ss_pred CChHHHHHHHhcCCC-----C-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhc
Q 005732 447 GSINDAQASFSSISS-----P-----NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ----DIVP-NAATFVGVLSACVR 511 (680)
Q Consensus 447 g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~ 511 (680)
|+++.|...+++..+ + ...+++.+..+|...|++++|++.|++..+. +-.+ ...++..+...|..
T Consensus 155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 555555554444321 1 2346788999999999999999999988762 1111 13567788889999
Q ss_pred cCCHHHHHHHHHHHHh-----cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhc
Q 005732 512 AGLVNEGMKIFRSMKS-----YGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM----PI--ELD-AVVWGALLSACWFW 579 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~ 579 (680)
.|++++|.+.+++..+ .. +....++..+...+.+.|++++|.+.+++. .. .|. ...+..+...+...
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999885 33 333778888999999999999999999876 11 232 33455555556667
Q ss_pred CC---HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 580 MN---MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 580 g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
|+ +.+|+..+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 314 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 88888888772 23334456688999999999999999999998765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=8.5e-10 Score=97.96 Aligned_cols=168 Identities=13% Similarity=-0.022 Sum_probs=144.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.+.. ..+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45567778889999999999999998875 467788899999999999999999999998853 23577888888999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
...|++++|.+.++++.... +.+...+..+...+...|++++|.+.++++ . .+.+...+..++..+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998654 346788888999999999999999999987 2 34468889999999999999999999
Q ss_pred HHHHHHcCCCCCCch
Q 005732 588 AAQKMFGLDKKPISA 602 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~ 602 (680)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999887543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-10 Score=107.61 Aligned_cols=205 Identities=11% Similarity=-0.017 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc----CCCch-HhHHHHHHHHHHhcCChHHH
Q 005732 378 LHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PFESN-VYVGTSLVDMYSRCGSINDA 452 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 452 (680)
++++|.+.|.+. ...|...|++++|...+.+..+. +-+++ ..+++.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666665 23455667777777777666543 21111 34566666666666666666
Q ss_pred HHHHhcCCC-----CC----HHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhccCCH
Q 005732 453 QASFSSISS-----PN----VAAWTALMNGYSHH-GLGSEAVLLFEIMLEQDIVPN-------AATFVGVLSACVRAGLV 515 (680)
Q Consensus 453 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-------~~~~~~ll~~~~~~g~~ 515 (680)
+..|++..+ .+ ..+++.+...|... |++++|+..|++..+. .|+ ..++..+...+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 666655442 11 23555666666664 6666666666666542 111 23455566666666666
Q ss_pred HHHHHHHHHHHhcCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcC
Q 005732 516 NEGMKIFRSMKSYGVVPTL------EHYTCVVDLLGRSGHLHEAEEFIKDM-PIELDAV------VWGALLSACW--FWM 580 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g 580 (680)
++|+..|++..+....... ..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 6666666666643322221 13455555666666666666666665 3333211 2233333332 234
Q ss_pred CHHHHHHHHHHHHcCCCCC
Q 005732 581 NMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~ 599 (680)
++++|+..|+++.+++|..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 5666666666666655544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.2e-10 Score=110.42 Aligned_cols=266 Identities=11% Similarity=-0.013 Sum_probs=188.5
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNP----VTWNSMISGYVQNNLHEKALQLYMTMRKLAI- 394 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~- 394 (680)
.....+...|++++|...+++...... ..+. .+++.+...+...|++++|.+.+++......
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP-------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-------------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence 344456678888888888887665431 1222 2566777888899999999999998765321
Q ss_pred CCCh----hhHHHHHHHhcccCChHHHHHHHHHHHhc----CCC--c-hHhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 005732 395 DRTR----STFSVLFHACSCLGSLQQGQLLHAHLVKT----PFE--S-NVYVGTSLVDMYSRCGSINDAQASFSSISS-- 461 (680)
Q Consensus 395 ~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 461 (680)
.++. .++..+...+...|++++|...++...+. +.+ | ....+..+...+...|++++|...+++...
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1122 23556777888999999999999888753 222 2 345667788889999999999999987542
Q ss_pred C------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHHHhcC
Q 005732 462 P------NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN--AATFV----GVLSACVRAGLVNEGMKIFRSMKSYG 529 (680)
Q Consensus 462 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~~ 529 (680)
+ ....+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.....
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 1 245677888899999999999999999875321211 11111 23344778999999999999987543
Q ss_pred CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 530 VVPT---LEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIELDA-VVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 530 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
..+. ...+..+...+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...+++++...+.
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 2221 224567788899999999999998876 111122 35666777888999999999999999886553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-10 Score=121.44 Aligned_cols=166 Identities=12% Similarity=0.121 Sum_probs=136.7
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005732 430 ESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGV 505 (680)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 505 (680)
+.+...++.|...|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 44567788888888888888888888887663 4577888888899999999999999999888 4565 7788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005732 506 LSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNME 583 (680)
Q Consensus 506 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 583 (680)
..++...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.+++. ...| +...+..++.++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 889999999999999999988754 235778888999999999999999999887 4455 5788889999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 005732 584 VGERAAQKMFGLDKK 598 (680)
Q Consensus 584 ~a~~~~~~~~~~~p~ 598 (680)
+|.+.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999998876543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-08 Score=95.42 Aligned_cols=239 Identities=9% Similarity=-0.016 Sum_probs=154.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChH
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSIN 450 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (680)
.-..-.|.+..++.-..++ ...........+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3445567787777633222 1111222333344566655555421 11133333444444433 222
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 451 DAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 451 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
|+..|++..+ ++...+..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666766552 556666678888888899999999998887755322 45667777888889999999999999888
Q ss_pred hcCCCC-----ChhHHHHHHHH--HH--hcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-
Q 005732 527 SYGVVP-----TLEHYTCVVDL--LG--RSGHLHEAEEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGL- 595 (680)
Q Consensus 527 ~~~~~~-----~~~~~~~l~~~--~~--~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 595 (680)
+. .| +..+...|+.+ .. ..+++.+|..+|+++ ...|+..+...++.++.+.|++++|+..++.+.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 64 34 23444444444 22 334889999999988 44455333344444777889999999999887776
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 596 ---------DKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 596 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47788888888888888887 8889988888753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-09 Score=101.73 Aligned_cols=183 Identities=10% Similarity=-0.012 Sum_probs=107.3
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC-HHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS--P-N---VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPN-AATFV 503 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~ 503 (680)
+...+..+...+.+.|++++|.+.|+++.+ | + ...+..+..++.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444555555556666666666655542 2 2 34555555556666666666666666555321 111 23344
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005732 504 GVLSACVR--------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSA 575 (680)
Q Consensus 504 ~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 575 (680)
.+..++.. .|++++|+..|+++.+..+. +......+.......+.+ ...+..++..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 44444544 55556666665555543211 111111111100000000 1113567788
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHhhCC
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVL----------GKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 630 (680)
+...|++++|+..|+++++..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 8999999999999999999999854 4788999999977 89999999999998753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-10 Score=107.15 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcc--cCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhc
Q 005732 381 KALQLYMTMRKLAIDRTRSTFSVLFHACSC--LGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSS 458 (680)
Q Consensus 381 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (680)
+|.+++++..+. .+++...+ .++ .. .+++++|...+... ...|...|++++|.+.|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466667766654 23222222 222 22 22478888887765 4567788999999998877
Q ss_pred CCC-------C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CCHHHHHHHHH
Q 005732 459 ISS-------P--NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---VPN--AATFVGVLSACVRA-GLVNEGMKIFR 523 (680)
Q Consensus 459 ~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~-g~~~~A~~~~~ 523 (680)
... + ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+...|... |++++|+..|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 653 1 146888999999999999999999999876211 111 35788888899996 99999999999
Q ss_pred HHHhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHH
Q 005732 524 SMKSYGVVP-T----LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD---A-----VVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 524 ~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
+..+..... + ..++..+...+.+.|++++|++.+++. ...|+ . ..+..++.++...|++++|+..+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988432111 1 356888999999999999999999987 22222 1 25677888888999999999999
Q ss_pred HHHHcCCCCCCch-----HHHHHHHHH--hcCCchHHHHHHHHHh
Q 005732 590 QKMFGLDKKPISA-----YVILSNIYA--VLGKWGKKMDIRKRLT 627 (680)
Q Consensus 590 ~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~ 627 (680)
+++++++|+.... +..++..+. ..+++++|++.++++.
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 9999999986543 344566664 4567888888876654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.4e-09 Score=95.64 Aligned_cols=182 Identities=9% Similarity=-0.051 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHH
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISS--PN----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA----ATFVG 504 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ 504 (680)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+. .|+. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344455566666777777777766552 22 235556666667777777777777776653 2321 12333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH
Q 005732 505 VLSACVR------------------AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDA 566 (680)
Q Consensus 505 ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 566 (680)
+..++.. .|++++|...|+++.+..+. +...+....... ...... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----~~~~~~-----------~ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----FLKDRL-----------A 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----HHHHHH-----------H
Confidence 3333332 33445555555554432211 111111100000 000000 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHhhCCCccC
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI---SAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKD 634 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 634 (680)
.....++..+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++++...++...
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1113456678889999999999999999999985 5699999999999999999999999988765443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8.4e-10 Score=105.68 Aligned_cols=221 Identities=14% Similarity=0.053 Sum_probs=151.6
Q ss_pred cccCChHHHHHHHHHHHh-------cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CCHHHHHHH
Q 005732 409 SCLGSLQQGQLLHAHLVK-------TPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----------PNVAAWTAL 470 (680)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 470 (680)
...|++++|...+++..+ ...+....++..+...|...|++++|.+.++++.+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345677777777766665 23244567788899999999999999999887652 224578888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhc------C-CCCChhH
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQ------DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSY------G-VVPTLEH 536 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 536 (680)
...+...|++++|+..++++.+. .-.|+ ..++..+...+...|++++|.++++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988763 11233 567778888899999999999999988854 1 1223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHcCCCCC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDMP----------IEL-DAVVWGALLSACWFWM------NMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~p~~ 599 (680)
+..+..+|...|++++|.+++++.- ..+ ....+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788889999999999999888751 122 2223333333333222 3444444444444444555
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 600 ISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+..+..++.+|...|++++|.+++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667999999999999999999999988753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=97.77 Aligned_cols=139 Identities=6% Similarity=-0.133 Sum_probs=93.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE 552 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (680)
+...|++++|+..+++... ..|+ ...+..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3445566666666666544 2232 2334455666666677777777776666543 2256666677777777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 553 AEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGER-AAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 553 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
|+..|++. ...| ++..+..++..+...|++++|.. +++++++++|+++.+|...+.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777765 3344 57778888888888888876554 4688999999988888888888888775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-09 Score=100.94 Aligned_cols=171 Identities=9% Similarity=-0.064 Sum_probs=136.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 005732 454 ASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP 532 (680)
Q Consensus 454 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 532 (680)
+.+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++.... |
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p 182 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--Q 182 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--C
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--c
Confidence 3333333444556667778888999999999999999884 45 46778888889999999999999999887653 3
Q ss_pred ChhHH-HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC--CchHHHHH
Q 005732 533 TLEHY-TCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP--ISAYVILS 607 (680)
Q Consensus 533 ~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~ 607 (680)
+.... ......+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ +.++..++
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 43322 23333466778888888888876 3344 68899999999999999999999999999999998 78899999
Q ss_pred HHHHhcCCchHHHHHHHHHhh
Q 005732 608 NIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.++...|+.++|...+++...
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999988654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-08 Score=93.83 Aligned_cols=245 Identities=9% Similarity=0.040 Sum_probs=171.2
Q ss_pred HHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 005732 322 IKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTF 401 (680)
Q Consensus 322 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 401 (680)
++-..-.|.+..++.-..++...+ + ...-..+.++|...|++... ..-.|....+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~---------------~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~ 74 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVT---------------D-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVL 74 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCC---------------C-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCccc---------------h-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHH
Confidence 344455677777776554443221 2 23333456788888887642 1223333344
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCHHHHHHHHHHHHH
Q 005732 402 SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PNVAAWTALMNGYSH 476 (680)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~ 476 (680)
..+...+ ..+ +...+++..+.+ +++......+..++...|++++|.+++.+... .+...+..++..+.+
T Consensus 75 ~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 75 DLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 4444443 222 677777777665 45556666888999999999999999998743 356678888999999
Q ss_pred cCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHh--ccC--CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 005732 477 HGLGSEAVLLFEIMLEQDIVP-----NAATFVGVLSACV--RAG--LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS 547 (680)
Q Consensus 477 ~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~ll~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (680)
.|+.+.|.+.+++|.+ ..| +..+...+..++. ..| ++.+|..+|+++.+. .|+...-..+..++.+.
T Consensus 149 ~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp TTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHc
Confidence 9999999999999988 567 3667777776643 334 899999999998754 34423333444589999
Q ss_pred CChHHHHHHHHhC-CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 548 GHLHEAEEFIKDM-PI----------EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 548 g~~~~A~~~~~~~-~~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
|++++|.+.++.+ .. .| ++.++..++......|+ +|.++++++.+..|+++...
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999999865 21 24 57777677766677787 89999999999999996543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-09 Score=86.83 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=77.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~ 582 (680)
+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.++++++ . .+.+...+..++..+...|++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 3344444444444444444444322 123344444455555555555555555544 1 123455666677777778888
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++|...++++++..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888888888888888777778888888888888888888888776543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-09 Score=99.14 Aligned_cols=203 Identities=8% Similarity=-0.024 Sum_probs=146.1
Q ss_pred CChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCch---HhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---C-HHH
Q 005732 396 RTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESN---VYVGTSLVDMYSRCGSINDAQASFSSISS--P---N-VAA 466 (680)
Q Consensus 396 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~-~~~ 466 (680)
.+...+......+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+++.+ | . ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345667778888899999999999999999875 333 67788899999999999999999998864 3 2 456
Q ss_pred HHHHHHHHHH--------cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHH
Q 005732 467 WTALMNGYSH--------HGLGSEAVLLFEIMLEQDIVPNA-ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHY 537 (680)
Q Consensus 467 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (680)
+..+..++.. .|++++|+..|+++.+. .|+. .....+. .+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 7778888888 99999999999999984 4542 2211111 11111100 01124
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHcCCCCCCch
Q 005732 538 TCVVDLLGRSGHLHEAEEFIKDM-PIEL----DAVVWGALLSACWFW----------MNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
..+...|.+.|++++|+..++++ ...| ....+..++.++... |++++|+..++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 55677888889999998888876 2223 245677777777755 89999999999999999998643
Q ss_pred ---HHHHHHHHHhcCCchHH
Q 005732 603 ---YVILSNIYAVLGKWGKK 619 (680)
Q Consensus 603 ---~~~l~~~~~~~g~~~~A 619 (680)
...+..++.+.|+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44556666555555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-08 Score=91.16 Aligned_cols=162 Identities=9% Similarity=-0.094 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHHhcCCCCChhHH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG----LVNEGMKIFRSMKSYGVVPTLEHY 537 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 537 (680)
.++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|.++|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456667777777778888889999998888865 56667777777777 6 8999999999988755 56677
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCchHHH
Q 005732 538 TCVVDLLGR----SGHLHEAEEFIKDM-PIELD---AVVWGALLSACWF----WMNMEVGERAAQKMFGLDKKPISAYVI 605 (680)
Q Consensus 538 ~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 605 (680)
..|...|.. .+++++|++++++. ...|+ +..+..|...|.. .+++++|+.+|+++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 778888877 78999999999987 34443 7888888888888 78999999999999988 666788999
Q ss_pred HHHHHHhc-C-----CchHHHHHHHHHhhCCC
Q 005732 606 LSNIYAVL-G-----KWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 606 l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 631 (680)
|+.+|... | ++++|.+++++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999764 3 89999999999887763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.9e-09 Score=100.93 Aligned_cols=223 Identities=11% Similarity=0.021 Sum_probs=154.8
Q ss_pred HhCCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc------C-CCchHhHHHHH
Q 005732 374 VQNNLHEKALQLYMTMRKL-------AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT------P-FESNVYVGTSL 439 (680)
Q Consensus 374 ~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 439 (680)
...|++++|+..|++..+. ..+....++..+...+...|++++|...++.+.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665441 22223457788888999999999999999988764 2 23456678889
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCC-HHH
Q 005732 440 VDMYSRCGSINDAQASFSSISS-----------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ------DIVPN-AAT 501 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~ 501 (680)
...|...|++++|.+.++++.+ .....+..+...+...|++++|+..++++.+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999987652 12457888889999999999999999998874 11333 567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-C
Q 005732 502 FVGVLSACVRAGLVNEGMKIFRSMKSY-------GVVP-TLEHYTCVVDLLGRSG------HLHEAEEFIKDMP-IEL-D 565 (680)
Q Consensus 502 ~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~ 565 (680)
+..+...+...|++++|.++++++.+. ...+ ....+..+...+...+ .+.++...++... ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888889999999999999999988843 1122 2333444444444333 3444444555553 223 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLD 596 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 596 (680)
..++..++..+...|++++|..+++++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5678888999999999999999999998753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-09 Score=92.67 Aligned_cols=154 Identities=6% Similarity=-0.013 Sum_probs=96.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcC
Q 005732 471 MNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL-LGRSG 548 (680)
Q Consensus 471 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 548 (680)
...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++..... +...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 33444455555555555544431 22 234444444555555555555555555443221 22222211111 11222
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC--CchHHHHHHHHHhcCCchHHHHHHH
Q 005732 549 HLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP--ISAYVILSNIYAVLGKWGKKMDIRK 624 (680)
Q Consensus 549 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (680)
...+|++.+++. ...| ++..+..+..++...|++++|+..++++++.+|++ +..+..++.++...|+.++|...++
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 223456666655 3345 68888999999999999999999999999999986 5589999999999999999999998
Q ss_pred HHhh
Q 005732 625 RLTH 628 (680)
Q Consensus 625 ~~~~ 628 (680)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=93.45 Aligned_cols=124 Identities=9% Similarity=-0.036 Sum_probs=102.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 582 (680)
|...+...|++++|++.++...... +.+...+-.+...|.+.|++++|++.|++. ...| ++..|..++.++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4455667889999999999887532 123445667889999999999999999987 4455 688999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHhhC
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDI-RKRLTHL 629 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 629 (680)
++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887765 5777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=116.09 Aligned_cols=147 Identities=13% Similarity=0.017 Sum_probs=71.4
Q ss_pred cccCChHHHHHHHHHHH--------hcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHc
Q 005732 409 SCLGSLQQGQLLHAHLV--------KTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHH 477 (680)
Q Consensus 409 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 477 (680)
...|++++|...++++. +.. +.+...+..+...+...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45556666666666555 222 33344444555555555555555555554442 3344455555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005732 478 GLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEF 556 (680)
Q Consensus 478 ~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (680)
|++++|+..|++..+. .|+ ...+..+..++...|++++ ++.|+++.+.+. .+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555542 232 3444444445555555555 555555543321 1334444445555555555555555
Q ss_pred HHhC
Q 005732 557 IKDM 560 (680)
Q Consensus 557 ~~~~ 560 (680)
++++
T Consensus 557 ~~~a 560 (681)
T 2pzi_A 557 LDEV 560 (681)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 5544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-08 Score=82.13 Aligned_cols=132 Identities=21% Similarity=0.259 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG 545 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 545 (680)
.|..+...+...|++++|..+++++.+.+ ..+...+..+...+...|++++|..+++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677788888899999999998888753 2356777778888888899999999999888654 335677788888899
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 546 RSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++.+|++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999887 2 33467788888899999999999999999999988863
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=90.40 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=99.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR 546 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 546 (680)
..+..++.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|+++.+.. +.+...+..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44888899999999999999999984 45 47788889999999999999999999999765 3367788888888766
Q ss_pred cCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 547 SGH--LHEAEEFIKDMPIELDAV--VWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 547 ~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.|+ .+.+...++... .|++. .+...+.++...|++++|+..|++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666666663 34433 34455666777899999999999999999975
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-08 Score=97.07 Aligned_cols=219 Identities=9% Similarity=-0.041 Sum_probs=152.8
Q ss_pred CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHH
Q 005732 376 NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQAS 455 (680)
Q Consensus 376 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (680)
.|++++|.+++++..+... .. .+...++++.|...+..+ ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4677888888888765321 11 011146777777776654 4467777888888887
Q ss_pred HhcCCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 005732 456 FSSISS-----PN----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQD---IVPN--AATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 456 ~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776542 11 3477888889999999999999998876521 1222 3567778888888 999999999
Q ss_pred HHHHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 005732 522 FRSMKSYGVVP-----TLEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IELD----AVVWGALLSACWFWMNMEVGERA 588 (680)
Q Consensus 522 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 588 (680)
+++..+..... ...++..+...|.+.|++++|++.+++. . ..++ ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887422111 1467788899999999999999999886 1 1122 23566666777788999999999
Q ss_pred HHHHHcCCCCCCch-----HHHHHHHHHhcCCchHHHHH
Q 005732 589 AQKMFGLDKKPISA-----YVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 589 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 622 (680)
+++++ .+|..... ...++..+ ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99976433 33445544 56776666553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7e-09 Score=87.91 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=81.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+...+..+...+.+.|++++|+..|++. ...| ++..|..++.++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445566677788888888888888876 3334 6888888888899999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 005732 611 AVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~ 630 (680)
...|++++|.+.+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-08 Score=106.52 Aligned_cols=159 Identities=9% Similarity=0.037 Sum_probs=125.8
Q ss_pred cCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 005732 446 CGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKI 521 (680)
Q Consensus 446 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 521 (680)
.|++++|.+.|++..+ .+...|..+...+...|++++|++.|++..+. .| +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998874 45788999999999999999999999999985 45 477888899999999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCC
Q 005732 522 FRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW---MNMEVGERAAQKMFGLD 596 (680)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 596 (680)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |++++|...++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99999764 336788899999999999999999999987 3344 678888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 005732 597 KKPISAYVILS 607 (680)
Q Consensus 597 p~~~~~~~~l~ 607 (680)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.6e-08 Score=104.09 Aligned_cols=145 Identities=12% Similarity=-0.069 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
...+..+..++...|++++|+..|+++.+. .| +...+..+..++...|++++|++.|+++.+... .+...+..+..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~ 509 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAA 509 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 344444555555555555555555555542 22 234444444555555555555555555554321 13344445555
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 543 LLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
+|.+.|++++ ++.+++. ...| +...+..++.++...|++++|+..|+++++++|+++.++..++.++..
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 5555555555 5555444 2222 344455555555555555555555555555555555555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=86.21 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
...+..+...+.+.|++++|++.|++. ...| ++..|..++.++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 445666777788888888888888877 3344 68889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhCC
Q 005732 612 VLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~ 630 (680)
..|++++|.+.+++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.9e-08 Score=81.30 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+......|.+.|++++|++.|++. ...| ++..|..++.++...|++++|+..++++++++|+++.+|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 344455555566666666665554 2223 45566666666666666666666666666666666666666666666666
Q ss_pred CchHHHHHHHHHhhC
Q 005732 615 KWGKKMDIRKRLTHL 629 (680)
Q Consensus 615 ~~~~A~~~~~~~~~~ 629 (680)
++++|.+.+++..+.
T Consensus 96 ~~~~A~~~~~~al~l 110 (126)
T 4gco_A 96 EWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.8e-08 Score=87.13 Aligned_cols=130 Identities=10% Similarity=-0.102 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|.+.+++..... +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 34556677778888888888888776 35677788888888888888888888888887654 33566777778888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 545 GRSGHLHEAEEFIKDM-PIEL-D----------------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
...|++++|.+.+++. ...| + ...+..++.++...|++++|...++++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888776 2122 2 2667777777888888888888888888888876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-08 Score=80.77 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=89.9
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 005732 495 IVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGA 571 (680)
Q Consensus 495 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 571 (680)
+.|+ ...+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4454 3456666777778888888888888777654 335677777888888888888888888876 3334 6888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
++.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999998888877765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=86.14 Aligned_cols=133 Identities=12% Similarity=0.096 Sum_probs=96.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG 447 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (680)
.+..+|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++++++.. |.+...+..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 38888999999999999999988753 2356678888888889999999999999988876 667778888887776554
Q ss_pred C--hHHHHHHHhcCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005732 448 S--INDAQASFSSISSPNVAA--WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVG 504 (680)
Q Consensus 448 ~--~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 504 (680)
+ ...+...++.+..++... +..+..++...|++++|+..|++..+ +.|+......
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 3 455667777777665543 33345556667888888888888877 5677544433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-07 Score=86.00 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=122.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----hhHHH
Q 005732 469 ALMNGYSHHGLGSEAVLLFEIMLEQDI-VPNAA----TFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PT----LEHYT 538 (680)
Q Consensus 469 ~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 538 (680)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887422 22221 2334566677788999999999999863322 22 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchH
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDMP-----IELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAY 603 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 603 (680)
.+..+|...|++++|.++++++- .+.+ ..++..++..|...|++++|+..++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888761 1112 3477888999999999999999999999876443 5679
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHhh
Q 005732 604 VILSNIYAVLGK-WGKKMDIRKRLTH 628 (680)
Q Consensus 604 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 628 (680)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-07 Score=99.54 Aligned_cols=145 Identities=11% Similarity=0.002 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005732 412 GSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFE 488 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 488 (680)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++..+ .+...|..+..++...|++++|++.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555555443 33445555555555555555555555555432 234455555555555555555555555
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 005732 489 IMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS---GHLHEAEEFIKDM 560 (680)
Q Consensus 489 ~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 560 (680)
+..+. .| +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55553 22 24455555555555555555555555555432 12344455555555555 5555555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=98.22 Aligned_cols=196 Identities=9% Similarity=-0.021 Sum_probs=148.4
Q ss_pred ccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005732 410 CLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEI 489 (680)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 489 (680)
..|++++|..++++..+... .. .+...++++.|...|+. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35678889888888776421 11 01114788888877654 46778899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--C-CC--ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005732 490 MLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYG--V-VP--TLEHYTCVVDLLGRSGHLHEAEEFIKD 559 (680)
Q Consensus 490 m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (680)
..+. +-.+. ..+|..+...|...|++++|+..+++..+.- . .+ ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8753 21111 4578888889999999999999999887321 1 11 14577888899988 999999999987
Q ss_pred C-CC-----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC------chHHHHHHHHHhcCCchHHHHHHHH
Q 005732 560 M-PI-----EL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI------SAYVILSNIYAVLGKWGKKMDIRKR 625 (680)
Q Consensus 560 ~-~~-----~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (680)
. .+ .+ ...++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 11 146788889999999999999999999999876653 2567788888899999999999999
Q ss_pred Hh
Q 005732 626 LT 627 (680)
Q Consensus 626 ~~ 627 (680)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6.2e-08 Score=81.50 Aligned_cols=118 Identities=11% Similarity=-0.017 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
..+..+...+.+.|++++|.+.|++. ...| ++..|..++.++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34455666777888888888888776 3334 678888888889999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhhh
Q 005732 613 LGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLNS 675 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (680)
.|++++|.+.+++..+..+ .+|....+..+...+...+++
T Consensus 99 ~g~~~~A~~~~~~al~~~p-----------------------~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAA-----------------------AQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHH-----------------------TCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-----------------------CCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999876532 245555566666666555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.1e-07 Score=84.77 Aligned_cols=226 Identities=9% Similarity=0.015 Sum_probs=119.7
Q ss_pred HhCCC-hHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccC--ChHHHHHHHHHHHhcCCCchHhHHHHHHHHH----Hh
Q 005732 374 VQNNL-HEKALQLYMTMRKLAIDRTRS-TFSVLFHACSCLG--SLQQGQLLHAHLVKTPFESNVYVGTSLVDMY----SR 445 (680)
Q Consensus 374 ~~~~~-~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 445 (680)
.+.|. .++|+++++.+.. +.|+.. .++.--..+...+ +++++..+++.++... +.+..+++.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 34444 4688888888877 345544 3555555555666 7888888888877765 44444554433333 33
Q ss_pred c---CChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---
Q 005732 446 C---GSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGS--EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL--- 514 (680)
Q Consensus 446 ~---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--- 514 (680)
. ++++++.++++.+.+ .+..+|+--...+.+.|+++ ++++.++++.+.... |...|..-...+.+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 3 556666666665542 45555555555555566655 666666666654322 44445444444444443
Q ss_pred ---HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 005732 515 ---VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE-AEEFIKDM-PI----ELDAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 515 ---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a 585 (680)
++++++.++.+.... +-|...|+.+...+.+.|+..+ +.++.++. .. ..++..+..++.++.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 555555555555433 2244555555555555554322 33344433 11 12444445555555555555555
Q ss_pred HHHHHHHHc-CCCCCCchHH
Q 005732 586 ERAAQKMFG-LDKKPISAYV 604 (680)
Q Consensus 586 ~~~~~~~~~-~~p~~~~~~~ 604 (680)
.++++.+.+ .+|.....|.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhccChHHHHHHH
Confidence 555555553 4555443333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-07 Score=88.41 Aligned_cols=163 Identities=9% Similarity=-0.042 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC---CCC--hh
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA-----ATFVGVLSACVRAGLVNEGMKIFRSMKSYGV---VPT--LE 535 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 535 (680)
.+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667788899999999999888875322111 2233455566788899999999998874321 111 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------C
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM----PIELD-----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------I 600 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~ 600 (680)
+++.+...|...|++++|.+++++. ...|+ ..++..++..|...|++++|+..++++++..++. +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999998875 11222 2578889999999999999999999998865431 4
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHhh
Q 005732 601 SAYVILSNIYAVLGKWGKK-MDIRKRLTH 628 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 628 (680)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5688999999999999999 777877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.8e-06 Score=78.05 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=180.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC--ChHHHHHH
Q 005732 378 LHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG--SINDAQAS 455 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~ 455 (680)
++.++...|....+.| ...++|......++..+ +.+..+++.-...+...| +++++++.
T Consensus 31 ~y~~~~~~~~a~~~~~------------------e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~ 91 (306)
T 3dra_A 31 DYKQIMGLLLALMKAE------------------EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDW 91 (306)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3456666666665544 34468889999988887 667777888888888888 99999999
Q ss_pred HhcCCC---CCHHHHHHHHHHH----HHc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHH
Q 005732 456 FSSISS---PNVAAWTALMNGY----SHH---GLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVN--EGMKIFR 523 (680)
Q Consensus 456 ~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~ 523 (680)
++.+.. .+..+|+.-...+ ... +++++++.+++++.+...+ |...|..-.-.+.+.|.++ ++++.++
T Consensus 92 ~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 92 CEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 998874 4455666654444 445 7899999999999986533 6777877777777788888 9999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHc
Q 005732 524 SMKSYGVVPTLEHYTCVVDLLGRSGH------LHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMN-MEVGERAAQKMFG 594 (680)
Q Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 594 (680)
++.+.++ -+-..|+.-..++.+.|+ +++++++++++ ...| |...|+.+...+.+.|+ .+.+..+++++.+
T Consensus 171 ~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 171 KVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 9997654 367778777777777776 89999999887 3344 78889999888888877 5556778888888
Q ss_pred CC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 595 LD---KKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 595 ~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
++ |.++.++..++.+|.+.|+.++|.++++++.+
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 76 78888999999999999999999999999986
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=84.65 Aligned_cols=186 Identities=12% Similarity=-0.021 Sum_probs=132.2
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHhcCC--CchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCH----HHHH
Q 005732 397 TRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPF--ESNVYVGTSLVDMYSRCGSINDAQASFSSISS--PNV----AAWT 468 (680)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 468 (680)
+...+..+...+...|++++|...|+.+.+... +.....+..+..+|.+.|++++|+..|+++.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556667788899999999999999998642 12246778889999999999999999998763 321 2455
Q ss_pred HHHHHHHH------------------cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 005732 469 ALMNGYSH------------------HGLGSEAVLLFEIMLEQDIVPNAA-TFVGVLSACVRAGLVNEGMKIFRSMKSYG 529 (680)
Q Consensus 469 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 529 (680)
.+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999984 45532 2211110 000111111
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 530 VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
.....+...|.+.|++++|+..++++ ...|+ ...+..++.++.+.|+.++|+..++++....|++.+.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 11234567888999999999999987 33343 3567888889999999999999999999999987543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=82.36 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDR-TRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...++
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 34444444444444444444444444444432211 12233334444444444444444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.7e-07 Score=80.28 Aligned_cols=162 Identities=10% Similarity=-0.043 Sum_probs=126.8
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC----ChHHHHHHHHHHHhcCCCchHhHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLG----SLQQGQLLHAHLVKTPFESNVYVG 436 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 436 (680)
.++..+..+...|...+++++|+++|++..+.| +...+..+...|.. + +.++|...++...+.| ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 367788888999999999999999999998865 56677777777777 6 8999999999998866 55667
Q ss_pred HHHHHHHHh----cCChHHHHHHHhcCCC-CC----HHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005732 437 TSLVDMYSR----CGSINDAQASFSSISS-PN----VAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFV 503 (680)
Q Consensus 437 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 503 (680)
..|...|.. .+++++|.+.|++..+ .+ +..+..|...|.. .+++++|+.+|++..+.+ .+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHH
Confidence 777777776 7889999999988775 22 6788888888888 788999999999988852 2444566
Q ss_pred HHHHHHhcc-C-----CHHHHHHHHHHHHhcCCC
Q 005732 504 GVLSACVRA-G-----LVNEGMKIFRSMKSYGVV 531 (680)
Q Consensus 504 ~ll~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 531 (680)
.|...|... | ++++|.++|++..+.|..
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 666666532 2 889999999888877643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=77.61 Aligned_cols=119 Identities=11% Similarity=0.012 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
..+..+...+.+.|++++|++.|++. ... .++..+..++.++...|++++|+..++++++++|+++.++..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566677788888888888888876 333 3688888999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 005732 613 LGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANL 673 (680)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (680)
.|++++|.+.+++..+..+ . ....|.+..+...+.....++
T Consensus 85 ~~~~~~A~~~~~~al~~~p----~----------------~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 85 VKEYASALETLDAARTKDA----E----------------VNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHH----H----------------HHTTTTHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhCc----c----------------cCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999887531 1 124577777777777666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=83.50 Aligned_cols=117 Identities=9% Similarity=0.139 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCH--HHHH
Q 005732 512 AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSA-CWFWMNM--EVGE 586 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~g~~--~~a~ 586 (680)
.|++++|...+++..... +.+...+..+...|...|++++|.+.+++. ... .+...+..++.+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 444555555555544332 223444555555555555555555555544 112 244555555555 4556666 6666
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 587 RAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666666666666666666666666666666666666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-07 Score=79.88 Aligned_cols=127 Identities=6% Similarity=-0.082 Sum_probs=93.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWF 578 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 578 (680)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|.+.+++. .. +.+...+..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455555666666666666666666433 224556666677777777777777777765 22 3357788888889999
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHH--HHHhcCCchHHHHHHHHHhh
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSN--IYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 628 (680)
.|++++|...++++++..|+++..+..+.. .+...|++++|.+.+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999998777754444 48888999999999987654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.8e-07 Score=85.85 Aligned_cols=166 Identities=7% Similarity=0.015 Sum_probs=80.1
Q ss_pred HHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhh
Q 005732 275 VYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNT 351 (680)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 351 (680)
.+....+.+...+..+...+...|++++|...|++... | +...+..+...+.+.|++++|...++++...+
T Consensus 108 ~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------ 181 (287)
T 3qou_A 108 LLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------ 181 (287)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------
T ss_pred HHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------
Confidence 33333333334444455555555666666666555544 2 33455555666666666666666666665543
Q ss_pred HhhhcccCCCChhH-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCC
Q 005732 352 MISVIPEMERNPVT-WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFE 430 (680)
Q Consensus 352 l~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (680)
|+... .......+...++.+.|+..|++..... +.+...+..+...+...|++++|...+..+.+....
T Consensus 182 ---------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 182 ---------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp ---------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 22222 2222223444555555666665555432 123344444555555555555555555555544311
Q ss_pred -chHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 431 -SNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 431 -~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
.+...+..++..+...|+.++|...|
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 11344444455554445444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.5e-08 Score=93.24 Aligned_cols=192 Identities=9% Similarity=-0.073 Sum_probs=125.1
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 005732 432 NVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLS 507 (680)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 507 (680)
+...+..+...+...|++++|...|++..+ .+...|..+..++...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344556666677777777777777776552 35677777888888888888888888888774 34 4667777788
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
++...|++++|...|++..+.... +...+...+....+..+...... ........+......+... ..|++++|.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~ 156 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELE 156 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 888888888888888887743211 11111111111111111111111 2222334444444444332 3799999999
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHhhC
Q 005732 588 AAQKMFGLDKKPISAYVILSNIYAVL-GKWGKKMDIRKRLTHL 629 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 629 (680)
.++++++.+|++......+...+.+. +++++|.++|.++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998877777777777776 7899999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-05 Score=82.46 Aligned_cols=215 Identities=12% Similarity=-0.011 Sum_probs=133.6
Q ss_pred hHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 005732 333 DSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLG 412 (680)
Q Consensus 333 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 412 (680)
.+..+|+++.... +.+...|...+..+.+.|+.++|..+|++.... |....+......+...
T Consensus 197 Rv~~~ye~al~~~--------------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~- 258 (493)
T 2uy1_A 197 RMHFIHNYILDSF--------------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDE- 258 (493)
T ss_dssp HHHHHHHHHHHHT--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcch-
Confidence 4556777766543 556788888888888899999999999999886 5444322211111111
Q ss_pred ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
++ +++.+. ..+... ..+.+.. .........|...+....+.++.+.|..+|+++ .
T Consensus 259 --~~---~~~~l~---------------~~~~~~-~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~ 313 (493)
T 2uy1_A 259 --EA---VYGDLK---------------RKYSMG-EAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G 313 (493)
T ss_dssp --TH---HHHHHH---------------HHTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T
T ss_pred --hH---HHHHHH---------------HHHHhh-ccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h
Confidence 11 111111 111000 0000000 000012345666677777778899999999988 3
Q ss_pred CCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005732 493 QDIVPNAATFVGVLSAC-VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGA 571 (680)
Q Consensus 493 ~~~~p~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 571 (680)
. ..++...|......- ...++.+.|..+|+...+.- +.++..+...++...+.|+.+.|..+|+++. .....|..
T Consensus 314 ~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~ 389 (493)
T 2uy1_A 314 N-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDS 389 (493)
T ss_dssp T-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHH
T ss_pred C-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHH
Confidence 2 123444444322211 22347999999999998643 3345566777888888999999999999983 35777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHc
Q 005732 572 LLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
.+..-...|+.+.+..+++++.+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88777788999999999988875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=87.45 Aligned_cols=183 Identities=11% Similarity=-0.022 Sum_probs=110.9
Q ss_pred hcCChHHHHHHHhcCCC---CCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCC----------------
Q 005732 445 RCGSINDAQASFSSISS---PNVAAWTAL-------MNGYSHHGLGSEAVLLFEIMLEQDIVPN---------------- 498 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------- 498 (680)
..++...|.+.|.++.. .....|..+ ...+...++..+++..+.+... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35566666666665542 234455555 3444444455555555544443 2221
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----HH
Q 005732 499 ------AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDA----VV 568 (680)
Q Consensus 499 ------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~ 568 (680)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.....|++ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223334556667777777777777776533 22224445555677778888888888766433332 35
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLD--KK-PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++....+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 6667777777888888888888776433 33 334667777788888888888888888776543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=92.18 Aligned_cols=144 Identities=12% Similarity=0.011 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...|..+...+.+.|++++|+..|++..+. .|+...+ ..+.+.++- +.....|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 445666666677777777777777776663 2321000 000000000 0013566677777
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH-H
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK-M 620 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~ 620 (680)
|.+.|++++|++.+++. ...| +...+..++.++...|++++|+..|+++++++|+++.++..++.++...|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 3333 6888899999999999999999999999999999999999999999999999999 4
Q ss_pred HHHHHHhh
Q 005732 621 DIRKRLTH 628 (680)
Q Consensus 621 ~~~~~~~~ 628 (680)
..+++|.+
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46666653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-06 Score=79.29 Aligned_cols=130 Identities=12% Similarity=-0.007 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL 514 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 514 (680)
.+..+...+...|++++|.+.|++...++...|..+..++...|++++|+..|++..+.. ..+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344556667777777777777777777777777777777777777777777777777643 2245667777777777777
Q ss_pred HHHHHHHHHHHHhcCCCC---------------ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 005732 515 VNEGMKIFRSMKSYGVVP---------------TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD 565 (680)
Q Consensus 515 ~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 565 (680)
+++|.+.|++..+..... ....+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 777777777777533211 1256666777777777777777777775 44454
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=4.4e-07 Score=74.71 Aligned_cols=118 Identities=9% Similarity=-0.057 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSAC 576 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 576 (680)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.+++. .. +.+...+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3445555566666667777777666666443 224556666677777777777777777665 22 33577888888889
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (680)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999889999999999888763
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.6e-07 Score=73.31 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSAC 576 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 576 (680)
...+..+...+...|++++|.++++++.... +.+...+..+...+.+.|++++|..+++++ . .+.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3455555666666666666666666666443 234556666667777777777777777665 2 234677778888888
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999999998888888888876654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-07 Score=75.24 Aligned_cols=115 Identities=10% Similarity=-0.044 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACW 577 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 577 (680)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++. .. +.+...+..++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 334444444444555555555555444322 123444455555555555555555555554 12 235677777888888
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
..|++++|...++++++..|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88999999999999999999888888888888877664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-07 Score=73.28 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=83.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC--CCchHHHHHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK--PISAYVILSN 608 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 608 (680)
+...+..+...+...|++++|...+++. . .+.+...+..++.++...|++++|...++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455666777788888888888888776 2 2346778888888999999999999999999999999 8889999999
Q ss_pred HHHhc-CCchHHHHHHHHHhhCCCc
Q 005732 609 IYAVL-GKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 609 ~~~~~-g~~~~A~~~~~~~~~~~~~ 632 (680)
++... |++++|.+.+++..+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=76.28 Aligned_cols=95 Identities=13% Similarity=-0.089 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (680)
.+..+...+.+.|++++|+..+++. ...| +...|..++.++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667788899999999999887 3344 7888899999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 005732 614 GKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 614 g~~~~A~~~~~~~~~~~ 630 (680)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.4e-07 Score=84.00 Aligned_cols=138 Identities=9% Similarity=-0.142 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHH
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLL 544 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 544 (680)
+......+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 344556677778888888888777653 3544444445556777888888888887554321 111 23566777888
Q ss_pred HhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 545 GRSGHLHEAEEFIKDMP---IELD--AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
.+.|++++|+..|++.. ..|. .........++.+.|+.++|...|++++..+|+ +.+...|..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 88888888888888772 2143 346677777888999999999999999999998 666665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-06 Score=80.05 Aligned_cols=157 Identities=9% Similarity=-0.053 Sum_probs=117.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHH
Q 005732 439 LVDMYSRCGSINDAQASFSSISS-----PN----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-PN----AATFVG 504 (680)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 504 (680)
.+..+...|++++|.+.+++..+ ++ ...+..+...+...+++++|+..|+++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667788889999888877543 22 113334666677778999999999999874222 22 336888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh----c-CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKS----Y-GVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIELD-AVVWG 570 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 570 (680)
+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|.+++++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999998883 1 1111 2347788899999999999999998875 12222 67888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHcC
Q 005732 571 ALLSACWFWMN-MEVGERAAQKMFGL 595 (680)
Q Consensus 571 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 595 (680)
.++.++...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999998764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.4e-07 Score=76.03 Aligned_cols=105 Identities=8% Similarity=-0.007 Sum_probs=88.2
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 005732 495 IVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGA 571 (680)
Q Consensus 495 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 571 (680)
+.|+ ...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|++.|++. ...| ++..+..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4454 4567777788889999999999999998764 346788888999999999999999999987 3444 5788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
++.++...|++++|+..|++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999863
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=78.29 Aligned_cols=115 Identities=7% Similarity=-0.038 Sum_probs=87.4
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005732 487 FEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL 564 (680)
Q Consensus 487 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 564 (680)
|+++.. +.|+ ...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|++.+++. ...|
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444 3443 4456666777788888888888888887654 336777778888888888888888888876 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHH
Q 005732 565 -DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYV 604 (680)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 604 (680)
++..+..++.++...|++++|+..|++++++.|+++....
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 6778888999999999999999999999999998876643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-07 Score=76.21 Aligned_cols=93 Identities=5% Similarity=-0.005 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc-------hHHHH
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS-------AYVIL 606 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 606 (680)
.+..++..+.+.|++++|++.|++. ...| ++..|..++.++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556677777888888888887776 3344 5777888888888888888888888888888877643 56677
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 005732 607 SNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888899999988888765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-07 Score=78.85 Aligned_cols=111 Identities=11% Similarity=0.006 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSA 575 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 575 (680)
+...+..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35677788888899999999999999998654 336778888899999999999999999887 3344 58888889999
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
+...|++++|+..|+++++++|+++..+...+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999988866555433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=78.51 Aligned_cols=129 Identities=9% Similarity=-0.015 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh----cCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC-C----
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKS----YGVV-PTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P---IEL-D---- 565 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~---- 565 (680)
..+..+...+...|++++|...+++... .+.. ....++..+...+...|++++|.+.+++. . ..+ +
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444445555555555544442 1111 11233444555555555555555555443 0 011 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
...+..+...+...|++++|...++++++..+.. ...+..++.++...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2345556666666777777777777766543221 12246677777777777777777766654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=8.2e-07 Score=79.53 Aligned_cols=168 Identities=8% Similarity=-0.011 Sum_probs=100.8
Q ss_pred HHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 005732 443 YSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGM 519 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 519 (680)
....|+++.+.+.++...+ .....+..+...+...|++++|+..|++..+. .|+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH
Confidence 3444555555555544332 23445666677777788888888888777763 2221100000 000000
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 520 KIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
.. .....+..+..+|.+.|++++|++.+++. .. +.+...+..++.++...|++++|+..++++++++|
T Consensus 84 ---~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 84 ---KN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp ---HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ---HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 00 01245666777777888888888887776 22 34678888899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHH-HHHHHHhhCC
Q 005732 598 KPISAYVILSNIYAVLGKWGKKM-DIRKRLTHLE 630 (680)
Q Consensus 598 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 630 (680)
+++.++..++.++...|+.+++. ..++.+...+
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888877 5566665544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-06 Score=83.38 Aligned_cols=161 Identities=9% Similarity=-0.098 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HH
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISS---PNV------AAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---VPN--AA 500 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~ 500 (680)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677788888888877764331 111 2234455667778899999999998876321 122 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH---hcCC-CC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-C------CCC-CH
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMK---SYGV-VP--TLEHYTCVVDLLGRSGHLHEAEEFIKDM-P------IEL-DA 566 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~ 566 (680)
++..+...|...|++++|...+++.. +... .+ ...++..+...|.+.|++++|++++++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888888999999999999998887 2211 11 1257788889999999999999998875 1 111 26
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHcC
Q 005732 567 VVWGALLSACWFWMNMEVG-ERAAQKMFGL 595 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 595 (680)
.++..++.++...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7788888999999999999 7888887653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-07 Score=73.77 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+...+..+...+...|++++|...+++. .. +.+...+..++.++...|++++|...++++++.+|+++..+..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666777777777777777777765 22 335777888888888888999999999999998888888888899999
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 005732 611 AVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~ 630 (680)
...|++++|.+.+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999888887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-05 Score=78.23 Aligned_cols=375 Identities=9% Similarity=-0.031 Sum_probs=213.8
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCC-hhhHHHHHHHHHHh-CCC-CCchHHHHH
Q 005732 183 VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGA-FCEGKVVHGLLIKC-GFE-FDESIGGAL 259 (680)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l 259 (680)
.|...+..+-. ++ ++.+..+|++.... .| +...|..-+....+.++ .+....+|+..+.. |.. .+...|...
T Consensus 17 vyer~l~~~P~-~~-~e~~~~iferal~~--~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 17 IMEHARRLYMS-KD-YRSLESLFGRCLKK--SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHT-TC-HHHHHHHHHHHSTT--CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHCCC-CC-HHHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 56667776655 56 89999999998874 24 88888888877776663 45677788887765 433 356778887
Q ss_pred HHHhhc----CCCHHHHHHHHhhcCC-CccchhhHHHHHHHh---cCCHHHHHHHHHHhccCChhHHHHHHHHHhccCCh
Q 005732 260 IEFYCG----CEAFDGAMRVYDRLEN-PCLNASNSLINGLIS---MGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQV 331 (680)
Q Consensus 260 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 331 (680)
+..+.. .++.+.+.++|++... |... +..+-..|.. ......+..++.+.. +.+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-----------------~~y 153 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGS-LSELWKDFENFELELNKITGKKIVGDTL-----------------PIF 153 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCHHHHHHHHHHHH-----------------HHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhh-HHHHHHHHHHHHHHhccccHHHHHHHHh-----------------HHH
Confidence 777653 4567888888888762 2111 1222222211 111122222221110 122
Q ss_pred hhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCC--C-----hHHHHHHHHHHHHCCCCCChhhHHHH
Q 005732 332 DDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNN--L-----HEKALQLYMTMRKLAIDRTRSTFSVL 404 (680)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~m~~~~~~p~~~~~~~l 404 (680)
..|..+++.+...- ...+...|...+.--...+ - .+++..+|+++.... +.+...|...
T Consensus 154 ~~ar~~y~~~~~~~-------------~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~y 219 (493)
T 2uy1_A 154 QSSFQRYQQIQPLI-------------RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFY 219 (493)
T ss_dssp HHHHHHHHHHHHHH-------------HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 23333333322100 0113345555554432221 1 345677888877643 3446667777
Q ss_pred HHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005732 405 FHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAV 484 (680)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 484 (680)
+..+...|+.+.|..++++.... |.+...+. .|....+.++. +..+...+.. ...+.+
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~--------------~~~l~~~~~~-~~~~~~- 277 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV--------------YGDLKRKYSM-GEAESA- 277 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH--------------HHHHHHHTC---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH--------------HHHHHHHHHh-hccchh-
Confidence 77777888899999999988887 44433322 12221111111 1112111100 000000
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--C
Q 005732 485 LLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR-SGHLHEAEEFIKDM--P 561 (680)
Q Consensus 485 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~ 561 (680)
.. ..+ ......|...+....+.++.+.|..+|+++ .. ...+...|-..+..-.. .++.+.|.++|+.. .
T Consensus 278 ----~~-~~~-~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 278 ----EK-VFS-KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp --------CH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred ----hh-hcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 00 000 011345666677666788899999999999 32 22344555433333333 33699999999987 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 562 IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 562 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.+.++..+...+......|+.+.|..+|+++ +.....+...+..-...|+.+.+.+++++..+
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3234556666777777899999999999998 23445677777777788999999998888774
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=70.62 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLG 614 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (680)
+..+...+...|++++|.+.+++. .. +.+...+..++..+...|++++|...++++++..|+++..+..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444445555554444443 11 2234445555555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHhh
Q 005732 615 KWGKKMDIRKRLTH 628 (680)
Q Consensus 615 ~~~~A~~~~~~~~~ 628 (680)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.6e-07 Score=72.93 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 531 VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
+.+...+..+...+.+.|++++|.+.+++. ...| +...+..++..+...|++++|+..++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 334667788889999999999999999987 4444 78889999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHhhCC
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++...|++++|.+.+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999988753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=75.66 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=100.6
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcCCh--H
Q 005732 475 SHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL-LGRSGHL--H 551 (680)
Q Consensus 475 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 551 (680)
...|++++|+..+++..+.. ..+...+..+...+...|++++|...++++..... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888999998888743 23577888888899999999999999999886542 356777788888 7789998 9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 552 EAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 552 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
+|.+.++++ ...| +...+..++..+...|++++|...++++++..|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999887 3344 578888999999999999999999999999999986544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.3e-06 Score=67.75 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACW 577 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 577 (680)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++. ... .+...+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555556666666666666666666433 224556666666777777777777777665 223 35777888888899
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999877777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=73.14 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSN 608 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 608 (680)
...+..+...+...|++++|.+.+++. ...|+ ...+..+..++...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444445555555555555555544 33343 3445555555555666666666666666666655555666666
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 005732 609 IYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~ 628 (680)
++...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=75.73 Aligned_cols=64 Identities=8% Similarity=-0.008 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...+..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4567777788888888888888888888888888888888888888888888888888887764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.6e-07 Score=74.52 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC-------CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGL-------DKKPISAY----VILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..|..+..++...|++++|+..+++++++ +|+++.+| +..+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888899999999999999999999 99998899 99999999999999999999998865
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=70.82 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
...+..+...+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567778889999999999999999987 2 34468888999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhCC
Q 005732 612 VLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~ 630 (680)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=78.11 Aligned_cols=152 Identities=13% Similarity=-0.017 Sum_probs=91.6
Q ss_pred cCChHHHHH---HHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHHH
Q 005732 446 CGSINDAQA---SFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLE----QDIVP-NAATFVGVLSACVRAGLVNE 517 (680)
Q Consensus 446 ~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~g~~~~ 517 (680)
.|++++|.+ .+..........+..+...+...|++++|+..+++..+ .+..| ....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 44332223445566666666667777777777666654 11111 23456666667777777777
Q ss_pred HHHHHHHHHhc----CCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHH
Q 005732 518 GMKIFRSMKSY----GVVP--TLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIELD----AVVWGALLSACWFWMNME 583 (680)
Q Consensus 518 A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~ 583 (680)
|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 77777766632 1111 1344666777777788888887777664 11112 234567777788889999
Q ss_pred HHHHHHHHHHcCCC
Q 005732 584 VGERAAQKMFGLDK 597 (680)
Q Consensus 584 ~a~~~~~~~~~~~p 597 (680)
+|...+++++++..
T Consensus 165 ~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 165 EAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888876543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00022 Score=68.37 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=115.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccC-ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhc-C-
Q 005732 372 GYVQNNLHEKALQLYMTMRKLAIDRTRS-TFSVLFHACSCLG-SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRC-G- 447 (680)
Q Consensus 372 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 447 (680)
...+.+..++|+++++++... .|+.. .++.--..+...| .++++..+++.+.... +.+..+++.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334455667899999999874 45443 4555555555566 5889999999888876 66777777766666665 6
Q ss_pred ChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 005732 448 SINDAQASFSSISS---PNVAAWTALMNGYSHHGLGS--------EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL-- 514 (680)
Q Consensus 448 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-- 514 (680)
+++++.++++.+.+ .|..+|+--...+.+.|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 78888888888775 45667766555555555555 788888888875433 56666666666666554
Q ss_pred -----HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 515 -----VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 515 -----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777776543 3356666665556655554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-06 Score=69.34 Aligned_cols=110 Identities=7% Similarity=-0.129 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005732 501 TFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWF 578 (680)
Q Consensus 501 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 578 (680)
.+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..++.++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44455555666666666666666666443 224566666667777777777777777665 2333 57778888888888
Q ss_pred cCCHHHHHHHHHHHHcCC------CCCCchHHHHHHHHH
Q 005732 579 WMNMEVGERAAQKMFGLD------KKPISAYVILSNIYA 611 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 611 (680)
.|++++|...++++++++ |+++.....+..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999988 777666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=72.28 Aligned_cols=107 Identities=8% Similarity=-0.033 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACW 577 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 577 (680)
..+..+...+...|++++|...|+++.... +.+...|..+..+|.+.|++++|++.+++. ...| ++..+..++.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344445556666777777777777766543 235566666777777777777777777766 2233 5677788888899
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHH
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILS 607 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 607 (680)
..|++++|+..++++++..|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999998876655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-06 Score=72.19 Aligned_cols=93 Identities=12% Similarity=-0.033 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
..|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|+..+++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444445555555555555555555542 22 34444444555555555555555555555432 1234444455555
Q ss_pred HHhcCChHHHHHHHHhC
Q 005732 544 LGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~ 560 (680)
|...|++++|.+.|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-06 Score=86.93 Aligned_cols=145 Identities=10% Similarity=0.001 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...|..+...+.+.|++++|+..|++..+. .|+...+ ..+... +.. ......|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~----~~~----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESK----ASE----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHH----HHH----HHHHHHHHHHHHH
Confidence 446667777777788888888888777762 2221000 000000 000 0013566677788
Q ss_pred HHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
|.+.|++++|++.+++. ... .+...+..+..++...|++++|+..|+++++++|++..++..++.++.+.|++++|.+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876 333 3688889999999999999999999999999999999999999999999999988875
Q ss_pred -HHHHHhhC
Q 005732 622 -IRKRLTHL 629 (680)
Q Consensus 622 -~~~~~~~~ 629 (680)
.+++|..+
T Consensus 407 ~~~~~~f~k 415 (457)
T 1kt0_A 407 RIYANMFKK 415 (457)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 45666544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=70.18 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+...+..+...+...|++++|.+.+++. . .+.+...+..++..+...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3556777888999999999999999987 3 3347888899999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 005732 611 AVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~ 630 (680)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.35 E-value=7.1e-08 Score=93.14 Aligned_cols=463 Identities=9% Similarity=0.013 Sum_probs=257.9
Q ss_pred CccchhhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 005732 16 TLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCA 95 (680)
Q Consensus 16 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~ 95 (680)
-.+.+|+.|..++.+.|++.+|+..|- ...|...|..+|.+..+.|++++-+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 355677889999999898888888763 445666678888889999999998888887776533 3344456777888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhcc
Q 005732 96 QLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIK 175 (680)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 175 (680)
+.++..+.++++. .|+..-...+.+-+...|.++.|.-+|..+.. |..|...+++.|++..|++.-++
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777655443322 35555566677777777777777777776643 44555667777777777766553
Q ss_pred CCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchH
Q 005732 176 MPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESI 255 (680)
Q Consensus 176 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 255 (680)
..++.||..+-.+|...+. +.-|.-.--.++- .+.-...++..|-..|.+++-..+++.-+... .....+
T Consensus 196 --Ans~ktWKeV~~ACvd~~E-frLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGm 265 (624)
T 3lvg_A 196 --ANSTRTWKEVCFACVDGKE-FRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 265 (624)
T ss_dssp --CCSSCSHHHHTHHHHHSCT-TTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHH
T ss_pred --cCChhHHHHHHHHHhCchH-HHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHH
Confidence 3567899999999999888 7777655444442 33344567777888899998888887765322 345677
Q ss_pred HHHHHHHhhcCCCHHHHHHHHhhcC-CCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 256 GGALIEFYCGCEAFDGAMRVYDRLE-NPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
++-|.-.|++- ++++-.+.++-.- +-+. ..+++++-+...|.++.-++..-. +++.|
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNi---pKviracE~ahLW~ElvfLY~~yd------------------E~DnA 323 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNI---PKVLRAAEQAHLWAELVFLYDKYE------------------EYDNA 323 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCC---TTTHHHHTTTTCHHHHHHHHHHHT------------------CHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccH---HHHHHHHHHHhhHHHHHHHHhcch------------------hHHHH
Confidence 88888888775 3444444443322 1111 234444444444444433333222 22222
Q ss_pred HHH--------HhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005732 335 KRL--------FEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFH 406 (680)
Q Consensus 335 ~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 406 (680)
... |+.-.-.++.+ ...|...|-.-|..|.... +..--.++.-+. ..+.++ .+++
T Consensus 324 ~ltMi~h~~~Aw~h~~Fkdii~----------KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~-prlDh~-----RvV~ 386 (624)
T 3lvg_A 324 IITMMNHPTDAWKEGQFKDIIT----------KVANVELYYRAIQFYLEFK-PLLLNDLLMVLS-PRLDHT-----RAVN 386 (624)
T ss_dssp HHTTTSCHHHHCCGGGGTTTGG----------GCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHC-TTCCST-----TTHH
T ss_pred HHHHHhCChhhccHHHHHHHHH----------HcchHHHHHHHHHHHHHhC-hHHHHHHHHhcc-ccCChH-----HHHH
Confidence 110 10000000000 1233444444444333321 111111111110 000000 1112
Q ss_pred HhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC-------------CCHHHHHHHHHH
Q 005732 407 ACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS-------------PNVAAWTALMNG 473 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~~~ 473 (680)
.+.+.|+..-+..++..... ..+..+-.++-+.|....+++.-....+.... +-......-...
T Consensus 387 ~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~L 463 (624)
T 3lvg_A 387 YFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYL 463 (624)
T ss_dssp HHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHH
Confidence 22222222222222211111 12333334455555556665554444333322 223333344455
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
|.+++++++++.+.++ . ..|.-.+.....+|+.+-+.++++-..+.| +..+|...+-.|...=+.+-+
T Consensus 464 Ykkn~rw~qsi~l~Kk---D------klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvV 531 (624)
T 3lvg_A 464 FKGNNRWKQSVELCKK---D------SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 531 (624)
T ss_dssp HHTTCHHHHHSSCSST---T------CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHH
T ss_pred HHhcccHHHHHHHHHh---c------ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHH
Confidence 6777888877765422 1 122233455667888888888888888755 556777777777777778888
Q ss_pred HHHHH
Q 005732 554 EEFIK 558 (680)
Q Consensus 554 ~~~~~ 558 (680)
+++--
T Consensus 532 lElaW 536 (624)
T 3lvg_A 532 LETAW 536 (624)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87743
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=71.84 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=54.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHHHHH
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIEL-DA---VVWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSNIYA 611 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 611 (680)
+...+...|++++|.+.+++. ...| +. ..+..++.++...|++++|...++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455556666666655554 1122 12 355556666666777777777777777776666 455666777777
Q ss_pred hcCCchHHHHHHHHHhhC
Q 005732 612 VLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~ 629 (680)
..|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777666553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.5e-06 Score=68.58 Aligned_cols=111 Identities=11% Similarity=-0.059 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGAL 572 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 572 (680)
...+..+...+...|++++|.+.|++..+.. |+ ...+..+..+|...|++++|++.+++. ...| +...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444445555555555555555555322 22 345555566666666666666666655 2233 57777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 573 LSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 573 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
..++...|++++|...++++++.+|+++..+..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 888889999999999999999999998777766666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-05 Score=68.52 Aligned_cols=128 Identities=10% Similarity=-0.034 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|.+.+++..... +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888888888888888887743 2246777778888888888888888888888654 33567788888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHc
Q 005732 545 GRSGHLHEAEEFIKDM-PIEL-DAVVWGAL--LSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
...|++++|.+.+++. ...| +...+..+ +..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999998888876 3333 44455333 3346678899999888877644
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=6e-06 Score=68.56 Aligned_cols=111 Identities=9% Similarity=-0.108 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSA 575 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 575 (680)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++. ...| +...+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45566666666777777777777777766543 234566677777777777777777777766 2233 57788888888
Q ss_pred HHhcCCHHHHHHHHHHHHcCCCC-----CCchHHHHHHH
Q 005732 576 CWFWMNMEVGERAAQKMFGLDKK-----PISAYVILSNI 609 (680)
Q Consensus 576 ~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~ 609 (680)
+...|++++|+..++++++..|+ +......+..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 88999999999999999998887 44444444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.9e-07 Score=72.41 Aligned_cols=83 Identities=11% Similarity=0.011 Sum_probs=51.8
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 547 SGHLHEAEEFIKDM-PI---EL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 547 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
.|++++|++.|++. .. .| +...+..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 13 345566666666777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhC
Q 005732 622 IRKRLTHL 629 (680)
Q Consensus 622 ~~~~~~~~ 629 (680)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-06 Score=80.68 Aligned_cols=93 Identities=6% Similarity=-0.103 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 005732 184 WTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFY 263 (680)
Q Consensus 184 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (680)
+..+...+...|+ +++|...|++..+... .+...|..+..++...|++++|...++..++.. +.+...+..+..+|
T Consensus 7 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 7 LKEQGNRLFVGRK-YPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4444455555555 5666666666655432 245555556666666666666666666655543 22344555555666
Q ss_pred hcCCCHHHHHHHHhhcC
Q 005732 264 CGCEAFDGAMRVYDRLE 280 (680)
Q Consensus 264 ~~~g~~~~A~~~~~~~~ 280 (680)
...|++++|...|+...
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66666666666665544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00043 Score=66.39 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=109.7
Q ss_pred HHHHHHHhhcC---CCccchhhHHHHHHHhcC-CHHHHHHHHHHhcc---CChhHHHHHHHHHhcc-C-ChhhHHHHHhh
Q 005732 270 DGAMRVYDRLE---NPCLNASNSLINGLISMG-RIEDAELIFNRLTE---ANSISYNSMIKGYAVY-G-QVDDSKRLFEK 340 (680)
Q Consensus 270 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~ 340 (680)
++|+++++.+. |.+...|+.-..++...| .+++++..++.+.. .+..+|+.-...+... + +.++++.++++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34455544444 444444455555555556 47777777777766 3344666665566555 5 78888999999
Q ss_pred cCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 005732 341 MPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHE--------KALQLYMTMRKLAIDRTRSTFSVLFHACSCLG 412 (680)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 412 (680)
+.+.+ +.|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+
T Consensus 151 ~L~~d--------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 151 SLLPD--------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HTSSC--------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred HHHhC--------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 98887 678888887666666655565 8999999998864 346667777777776666
Q ss_pred C-------hHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCCh
Q 005732 413 S-------LQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSI 449 (680)
Q Consensus 413 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (680)
. ++++.+.+...+... +.|...++-+-..+.+.|+.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 5 577778887777766 66777777666666665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-06 Score=86.97 Aligned_cols=117 Identities=6% Similarity=-0.068 Sum_probs=90.1
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVG 585 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 585 (680)
.+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..++.++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4556777777777777777543 234677777788888888888888888776 3344 678888999999999999999
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 005732 586 ERAAQKMFGLDKKPISAYVILSNI--YAVLGKWGKKMDIRKR 625 (680)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 625 (680)
+..++++++.+|+++.++..++.+ +.+.|++++|++.+++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999888888 8889999999999883
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-06 Score=69.16 Aligned_cols=92 Identities=8% Similarity=0.007 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC-------CchHHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP-------ISAYVILS 607 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~ 607 (680)
+..+...+...|++++|...+++. . .+.+...+..++..+...|++++|...++++++..|++ +.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333444444445555555444443 1 12234445555555555555555555555555555443 44555555
Q ss_pred HHHHhcCCchHHHHHHHHHhh
Q 005732 608 NIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.++...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 556666666666666555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=65.23 Aligned_cols=105 Identities=11% Similarity=-0.034 Sum_probs=68.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C---HHHHHHHHHHHH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-D---AVVWGALLSACW 577 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~---~~~~~~l~~~~~ 577 (680)
+...+...|++++|...|+++.+...... ...+..+..++.+.|++++|.+.+++. ...| + +..+..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445566666666666666664332211 135555666677777777777777665 2223 2 566777888888
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
..|++++|...++++++..|+++........+
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 99999999999999999999886554444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.7e-06 Score=83.18 Aligned_cols=150 Identities=10% Similarity=-0.077 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 45677778888889999999999999887 4565442 223344444433221 2367788899
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH-hcCCchHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA-VLGKWGKKM 620 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~ 620 (680)
|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..|+++++++|+++.++..+..+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 3344 68889999999999999999999999999999999999998888844 457788888
Q ss_pred HHHHHHhhCCCc
Q 005732 621 DIRKRLTHLEVK 632 (680)
Q Consensus 621 ~~~~~~~~~~~~ 632 (680)
+.+++|....+.
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 899888766543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00017 Score=68.77 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCChhHHHHH
Q 005732 464 VAAWTALMNGYSHHG--LGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGL-VNEGMKIFRSMKSYGVVPTLEHYTCV 540 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 540 (680)
..+|+.-...+...+ .+++++.+++++.+...+ |...|+.-.-.+...|. ++++++.++.+.+.. +-+...|+..
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R 185 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 334444333333333 244555555555543221 33444433333334444 345555555555433 2234444433
Q ss_pred HHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 005732 541 VDLLGRS--------------GHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW-----------MNMEVGERAAQKMF 593 (680)
Q Consensus 541 ~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~ 593 (680)
...+.+. +.++++++++++. ...| |...|+.+-..+... +-++++++.+++++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 3333332 3355566655554 2223 455555444444333 34677777777777
Q ss_pred cCCCCCCchHHHHHHHH---HhcCCchHHHHHHHHHhhC
Q 005732 594 GLDKKPISAYVILSNIY---AVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 594 ~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 629 (680)
+..|++.-++..++.+. ...|..+++...+.++.+.
T Consensus 266 e~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 266 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 77777643333333221 2346666777777777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-05 Score=71.24 Aligned_cols=93 Identities=13% Similarity=0.002 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-D----------------AVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
+..+...+.+.|++++|++.+++. ...| + ...+..+..++...|++++|+..++++++.+|+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 334445555555555555555544 1111 1 367888888999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 599 PISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
++.++..++.+|...|++++|.+.+++..+.
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=7e-06 Score=66.39 Aligned_cols=97 Identities=9% Similarity=-0.077 Sum_probs=66.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005732 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM 580 (680)
Q Consensus 503 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 580 (680)
..+...+.+.|++++|+..++++.+.. +.+...|..+..++...|++++|+..+++. ...| +...+..++.++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455666777777777777776543 235666667777777777777777777766 3344 5777888888888899
Q ss_pred CHHHHHHHHHHHHcCCCCCC
Q 005732 581 NMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~ 600 (680)
++++|+..++++++.+|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999888764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.1e-06 Score=81.64 Aligned_cols=139 Identities=9% Similarity=-0.050 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDL 543 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (680)
...+..+...+.+.|++++|+..|++..+. .|... .....+++. .. .+.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~-------~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA-------KL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH-------HH-HHHHHHHHHHHHHH
Confidence 345666777777888888888888777651 11110 000111110 00 11235677788888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMD 621 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (680)
|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..++..++.++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4555 688889999999999999999999999999999999999999999999988887765
Q ss_pred H
Q 005732 622 I 622 (680)
Q Consensus 622 ~ 622 (680)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=77.92 Aligned_cols=95 Identities=15% Similarity=0.015 Sum_probs=57.6
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 431 SNVYVGTSLVDMYSRCGSINDAQASFSSISS--PN----------------VAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
.+...+..+...+.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..+++..+
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788899999999999999999987753 22 24555555555555555555555555555
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 005732 493 QDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKS 527 (680)
Q Consensus 493 ~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 527 (680)
. .| +...+..+..++...|++++|+..|+++.+
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 22 244444444444444455555444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.4e-06 Score=70.55 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------Cch
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM----PIEL----DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISA 602 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 602 (680)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++++..+.. +..
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 334444445555555555544443 0011 13455666777777888888888888877653221 345
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 603 YVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+..++.++...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77888888899999999998888765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=65.37 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.+++..+..... ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~---- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RADYKLI---- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-chhhHHH----
Confidence 4455666666677777777777766663 333 5556666666666666666666666655321110 0000000
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Q 005732 545 GRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 598 (680)
..++..++.++...|++++|+..|+++++..|+
T Consensus 83 ---------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ---------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 123445555666667777777777777666664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=7.3e-06 Score=67.18 Aligned_cols=108 Identities=7% Similarity=0.019 Sum_probs=59.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCC----HHHHHHHH
Q 005732 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P----IELD----AVVWGALL 573 (680)
Q Consensus 503 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~----~~~~~~l~ 573 (680)
..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. . ..++ ...+..++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333344444444444444444444322 123344444444555555555555555443 1 1122 55667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
.++...|++++|...++++++..| ++.....+..+...
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 788888888888888888888887 44556555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-06 Score=69.16 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005732 512 AGLVNEGMKIFRSMKSYG--VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGER 587 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 587 (680)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|++.+++. ...| ++..+..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666666666542 1223455666677777777777777777766 2333 57778888888889999999999
Q ss_pred HHHHHHcCCCCCCchH
Q 005732 588 AAQKMFGLDKKPISAY 603 (680)
Q Consensus 588 ~~~~~~~~~p~~~~~~ 603 (680)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 9999999988886543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-05 Score=81.67 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=91.5
Q ss_pred HhccCCHHHHHHHHHHHHh---cCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKS---YGVVP----TLEHYTCVVDLLGRSGHLHEAEEFIKDM---------PIELD-AVVWGA 571 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 571 (680)
+...|++++|..++++..+ .-+.+ ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456677777776666652 11111 2455677777777778888777777664 23443 566888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 005732 572 LLSACWFWMNMEVGERAAQKMFG-----LDKKPISA---YVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPG 636 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 636 (680)
|+..|...|++++|+.+++++++ ++|++|.+ ...+..++...|++++|..++.++++....+.|-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~ 471 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPM 471 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999977 57887655 5678888889999999999999998865444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.8e-05 Score=77.63 Aligned_cols=168 Identities=10% Similarity=-0.027 Sum_probs=131.4
Q ss_pred hHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--
Q 005732 449 INDAQASFSSISS---PNVAAWTALMNGYSHHGL----------GSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAG-- 513 (680)
Q Consensus 449 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-- 513 (680)
.++|.+.++.+.. .+...|+.-..++...|+ ++++++.++++.+...+ +...|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3456666666553 344566665555555555 88999999999985433 5777777777777888
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 005732 514 LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG-HLHEAEEFIKDM-PIEL-DAVVWGALLSACWFW----------- 579 (680)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------- 579 (680)
+++++++.++++.+.... +...|+.-..++.+.| .+++++++++++ ...| +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 779999999999976533 6778887777888888 899999999988 4555 688888887777653
Q ss_pred ---CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchH
Q 005732 580 ---MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGK 618 (680)
Q Consensus 580 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (680)
+.++++.+.+++++..+|++..+|..+.+++.+.|++++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999998665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-05 Score=62.46 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL---DAVVWGALLSA 575 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 575 (680)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344455566666777777777777666543 234556666777777777777777777765 2233 47777888888
Q ss_pred HHhc-CCHHHHHHHHHHHHcCCCCCC
Q 005732 576 CWFW-MNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 576 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 600 (680)
+... |++++|.+.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=82.18 Aligned_cols=162 Identities=7% Similarity=-0.110 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHh----cCCCC-ChhH
Q 005732 467 WTALMNGYSHHGLGSEAVLLFEIMLEQD-IVPNA----ATFVGVLSACVRAGLVNEGMKIFRSMKS----YGVVP-TLEH 536 (680)
Q Consensus 467 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~ 536 (680)
+..++..|...|++++|.+.+.++...- ..++. ...+.+...+...|+++.|.++++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777776665421 11121 1222233334456778888887776652 22222 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC---CC----Cc
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-----P--IEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDK---KP----IS 601 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 601 (680)
+..+...|...|++++|.+++++. + ..+ ...++..++..|...|++++|..++++++...+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667788888888888888887765 1 122 255677777888888888888888888876532 22 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 602 AYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456667777788888888888776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.11 E-value=4.2e-05 Score=78.59 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=56.1
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE 552 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (680)
+.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455555566655555552 232 4555555555555666666666665555442 2234555555555666666666
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005732 553 AEEFIKDM-PIEL-DAVVWGALLSA--CWFWMNMEVGERAAQ 590 (680)
Q Consensus 553 A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~ 590 (680)
|.+.+++. ...| +...+..+..+ +...|++++|+..++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66655554 1122 22233333333 555566666666666
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-06 Score=68.89 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC------CchHH
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIE-LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP------ISAYV 604 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 604 (680)
+...+..+...+...|++++|++.+++. ... .++..+..++.++...|++++|+..++++++.+|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455666777788888888888888776 333 367888899999999999999999999999999998 77788
Q ss_pred HHHHHHHhcCCchHHHHHHHHH
Q 005732 605 ILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
.++.++...|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8899999999888887765443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00044 Score=66.03 Aligned_cols=242 Identities=9% Similarity=0.004 Sum_probs=165.1
Q ss_pred hHHHHHHHH---HHhCCChH-HHHHHHHHHHHCCCCCChhh-HHHHHHHhcccCC----------hHHHHHHHHHHHhcC
Q 005732 364 VTWNSMISG---YVQNNLHE-KALQLYMTMRKLAIDRTRST-FSVLFHACSCLGS----------LQQGQLLHAHLVKTP 428 (680)
Q Consensus 364 ~~~~~li~~---~~~~~~~~-~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 428 (680)
..|..+... ..+.|.++ +|+++++.+.. +.|+..| ++.--..+...+. ++++..++..+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 344444433 34556654 89999999987 4565544 3332222222222 577888888888876
Q ss_pred CCchHhHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHH
Q 005732 429 FESNVYVGTSLVDMYSRCG--SINDAQASFSSISS---PNVAAWTALMNGYSHHGL-GSEAVLLFEIMLEQDIVPNAATF 502 (680)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~ 502 (680)
+.+..+|+.-...+.+.| .++++.+.++.+.+ .|..+|+--...+...|. ++++++.++++++..+. |...|
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW 182 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW 182 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 677778877777777777 48899999988874 677888888878888888 58999999999986533 56666
Q ss_pred HHHHHHHhcc--------------CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-----------CChHHHHHHH
Q 005732 503 VGVLSACVRA--------------GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS-----------GHLHEAEEFI 557 (680)
Q Consensus 503 ~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~ 557 (680)
+.....+.+. +.++++++.+....... +-|...|+.+-..+.+. +.++++++.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 6555444433 45788999999988654 44677777665555554 4578888888
Q ss_pred HhC-CCCCCH-HHHHHHHHHH---HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 005732 558 KDM-PIELDA-VVWGALLSAC---WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIY 610 (680)
Q Consensus 558 ~~~-~~~p~~-~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (680)
+++ ...|+. ..+..++... ...|..++....+.++.+++|....-|..+...+
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 887 455653 3333332211 1367888999999999999999866666655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.5e-06 Score=67.55 Aligned_cols=72 Identities=10% Similarity=-0.070 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-P-------IELD-AVVW----GALLSACWFWMNMEVGERAAQKMFGLDKKPISA 602 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 602 (680)
.|..+..++.+.|++++|+..+++. . +.|+ ...| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666655544 2 3675 5677 889999999999999999999999999998665
Q ss_pred HHHHH
Q 005732 603 YVILS 607 (680)
Q Consensus 603 ~~~l~ 607 (680)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=69.47 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC-chHHHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI-SAYVILSNIY 610 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 610 (680)
...|..+..+|.+.|++++|+..+++. ...| ++..|..++.++...|++++|...|+++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888888889999988888876 3344 688899999999999999999999999999999986 4455555444
Q ss_pred H
Q 005732 611 A 611 (680)
Q Consensus 611 ~ 611 (680)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-05 Score=61.59 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.++..+..++..+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367888899999999999999999999999999999999999999999999999999999998764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=77.69 Aligned_cols=150 Identities=6% Similarity=-0.028 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSISS--PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
...+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45577788888999999999999988653 33221 122233333332221 136777888889
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCCHHHHHH
Q 005732 511 RAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSAC-WFWMNMEVGER 587 (680)
Q Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~-~~~g~~~~a~~ 587 (680)
+.|++++|+..+++..... +.+...|..+..+|...|++++|.+.|++. ...|+ ...+..+.... ...+..+++..
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654 346778888999999999999999999987 45564 44555555442 34667888899
Q ss_pred HHHHHHcCCCCCC
Q 005732 588 AAQKMFGLDKKPI 600 (680)
Q Consensus 588 ~~~~~~~~~p~~~ 600 (680)
.|+++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999999874
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=77.42 Aligned_cols=113 Identities=5% Similarity=0.007 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIEL-DAVVWGALLSACW 577 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 577 (680)
...+..+...+.+.|++++|++.|++..+.- +. .......+++. ...| +...|..+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888887776420 00 00000111111 1223 4677888999999
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-05 Score=59.32 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 563 ELDAVVWGALLSACWFWMN---MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|++.|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4578888888888865554 799999999999999999999999999999999999999999999987543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.3e-05 Score=80.17 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005732 499 AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWF 578 (680)
Q Consensus 499 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 578 (680)
...+..+...+.+.|++++|+..|+++......... + ..+...+ .. .-....|..+..++.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~-~~----~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKA-SE----SFLLAAFLNLAMCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHH-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHH-HH----HHHHHHHHHHHHHHHH
Confidence 445666666777777777777777776642211100 0 0000000 00 0115678889999999
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 579 WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 579 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+..
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=66.36 Aligned_cols=132 Identities=12% Similarity=0.021 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC----CCC-Chh
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIV-PN----AATFVGVLSACVRAGLVNEGMKIFRSMKSYG----VVP-TLE 535 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~ 535 (680)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555566666666666666665542100 11 1345556666667777777777776665211 111 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM-------PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5556667777777777777777654 1111 144567777788889999999999998877543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00029 Score=71.71 Aligned_cols=157 Identities=9% Similarity=0.033 Sum_probs=76.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHhcccCChHHHHHHHHHHHhc-CCCch
Q 005732 370 ISGYVQNNLHEKALQLYMTMRKLAIDRTR----------------STFSVLFHACSCLGSLQQGQLLHAHLVKT-PFESN 432 (680)
Q Consensus 370 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 432 (680)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999998875432211 12445555666666666666666555432 10111
Q ss_pred H----hHHHHHHHHHHhcCChHHHHHHHhcCCC---------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CC--
Q 005732 433 V----YVGTSLVDMYSRCGSINDAQASFSSISS---------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ--DI-- 495 (680)
Q Consensus 433 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~-- 495 (680)
. .+.+.+...+...|+.+.|.++++.... .-..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222233334555555555443321 11234444555555555555555555544431 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 496 VPN-AATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 496 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
+|. ...+..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 111 2334444455555555555555555444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-05 Score=58.42 Aligned_cols=81 Identities=21% Similarity=0.182 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 534 LEHYTCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
...+..+...+...|++++|++.+++. .. +.+...+..+..++...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666677777777777777765 22 3356777788888888888999999999988888888888888888877
Q ss_pred hcC
Q 005732 612 VLG 614 (680)
Q Consensus 612 ~~g 614 (680)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-05 Score=62.51 Aligned_cols=78 Identities=9% Similarity=-0.031 Sum_probs=62.7
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 552 EAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 552 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
+|++.+++. ...| +...+..++..+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3334 57778888888888999999999999999999988888899999999999999999999888764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=8.5e-06 Score=67.66 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=60.3
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc
Q 005732 546 RSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMN----------MEVGERAAQKMFGLDKKPISAYVILSNIYAVL 613 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (680)
+.+.+++|.+.+++. ...| ++..|..+..++...++ +++|+..|+++++++|+.+.+|+.++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555554 2233 55566666665555544 56888999999999999888899999998877
Q ss_pred C-----------CchHHHHHHHHHhhCC
Q 005732 614 G-----------KWGKKMDIRKRLTHLE 630 (680)
Q Consensus 614 g-----------~~~~A~~~~~~~~~~~ 630 (680)
| ++++|++.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 4 7888999888887754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=9.4e-05 Score=61.22 Aligned_cols=89 Identities=8% Similarity=-0.073 Sum_probs=47.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh---
Q 005732 540 VVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV--- 612 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 612 (680)
|...|...+..++|.+.|++.....++..+..|...|.. .+++++|..+|+++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333344444444444444444222344455555555554 55666666666666554 344556666666666
Q ss_pred -cCCchHHHHHHHHHhhCC
Q 005732 613 -LGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 613 -~g~~~~A~~~~~~~~~~~ 630 (680)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666665554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.1e-05 Score=59.07 Aligned_cols=68 Identities=4% Similarity=-0.065 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
++...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|++.+++..+..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34667888889999999999999999999999999999999999999999999999999999987543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.1e-05 Score=75.87 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=89.4
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCc---hH
Q 005732 542 DLLGRSGHLHEAEEFIKDM---------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG-----LDKKPIS---AY 603 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~ 603 (680)
..+...|++++|+.++++. +..|+ ..+++.|+..|...|++++|+.+++++++ ++|+++. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466789999999988765 13332 56789999999999999999999999987 4677654 48
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 604 VILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
..|+.+|..+|++++|..++++..+--. ..-| ..||....+...+.+.-.+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-VTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876321 1111 369998888888777766554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00061 Score=71.28 Aligned_cols=156 Identities=10% Similarity=0.028 Sum_probs=125.3
Q ss_pred HHcCC-hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------HHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 475 SHHGL-GSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGL----------VNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 475 ~~~~~-~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
.+.|. .++|++.++++.. +.|+ ...|+.--..+...|+ ++++++.++.+..... -+..+|..-..
T Consensus 39 ~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w 115 (567)
T 1dce_A 39 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 115 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34454 4688999999999 4565 5556655555555565 8999999999997654 36778887778
Q ss_pred HHHhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhc----
Q 005732 543 LLGRSG--HLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM-NMEVGERAAQKMFGLDKKPISAYVILSNIYAVL---- 613 (680)
Q Consensus 543 ~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 613 (680)
++.+.| ++++++++++++ ...| +...|+.-...+...| .++++++.++++++.+|.+..+|...+.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888899 779999999998 3344 7888988888888888 899999999999999999999999999998875
Q ss_pred ----------CCchHHHHHHHHHhhCCCcc
Q 005732 614 ----------GKWGKKMDIRKRLTHLEVKK 633 (680)
Q Consensus 614 ----------g~~~~A~~~~~~~~~~~~~~ 633 (680)
+++++|++.+++.....+..
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 56789999998887765543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0002 Score=71.80 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=85.5
Q ss_pred HHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCc---hHH
Q 005732 543 LLGRSGHLHEAEEFIKDM------PIELD----AVVWGALLSACWFWMNMEVGERAAQKMFG-----LDKKPIS---AYV 604 (680)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 604 (680)
.+.+.|++++|++++++. ...|+ ..+++.++.+|...|++++|+.+++++++ ++|++|. .+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566667766666543 02222 55788888899999999999999999876 4566654 488
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHHHHHHHhh
Q 005732 605 ILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLEHLTANLN 674 (680)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (680)
.|+.+|..+|++++|..++++..+-- ...- ...||...+++..|.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIM-RVTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH-HHhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987631 1111 1379999999999998888776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00074 Score=55.71 Aligned_cols=112 Identities=9% Similarity=-0.087 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 005732 478 GLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEA 553 (680)
Q Consensus 478 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 553 (680)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46789999999999987 44444 6677777788899999999999865 66778888888888 8899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCC
Q 005732 554 EEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 597 (680)
.++|++....-++..+..|...|.. .++.++|..+++++.+.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999988444678888889998888 8999999999999988754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=54.38 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 565 DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
+...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356778888889999999999999999999999999999999999999999999999999988753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.58 E-value=2.6e-07 Score=89.29 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 361 RNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 361 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
.++.+|..+-.+|...+.+.-|.-.--.+. +.|+ ....++..|...|.+++-+.+++...... ......|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 356667777777777777665543332222 1121 22334556667777777777776665433 45566667776
Q ss_pred HHHHhcCChHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCChhHHHH
Q 005732 441 DMYSRCGSINDAQASFSSISS-----------PNVAAWTALMNGYSHHGLGSEAVL 485 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~ 485 (680)
-.|++- ++++..+.++...+ .....|.-++-.|..-.+++.|..
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 666654 45555555544332 234567777777777777776653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0001 Score=61.15 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=37.4
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHcCCCCCC
Q 005732 550 LHEAEEFIKDM-PIEL-DAVVWGALLSACWFW-----------MNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 550 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 600 (680)
+++|+..|++. .+.| +...|..++.+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666665 3444 466666777776655 589999999999999999984
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00031 Score=70.35 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=75.6
Q ss_pred cCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCc---hHHHHHH
Q 005732 547 SGHLHEAEEFIKDM---------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG-----LDKKPIS---AYVILSN 608 (680)
Q Consensus 547 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 608 (680)
.|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++ ++|+++. .+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 12332 56788899999999999999999999876 4666654 4889999
Q ss_pred HHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEEecCCCCCCChhHHHHHHH
Q 005732 609 IYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAFSVEDRNNPNCNVIYATLE 667 (680)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (680)
+|..+|++++|..++++..+--. ..- ...||...+++..|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIME-VAH-----------------GKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHH-HHc-----------------CCCChHHHHHHHHHh
Confidence 99999999999999999876321 111 136888777777665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00045 Score=54.87 Aligned_cols=81 Identities=9% Similarity=-0.003 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 005732 518 GMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGL 595 (680)
Q Consensus 518 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 595 (680)
|++.+++..+.. +.+...+..+...|...|++++|++.+++. ...| +...+..++.++...|++++|...++++++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555432 234556666666677777777777776665 2233 5667778888888888888888888888888
Q ss_pred CCCC
Q 005732 596 DKKP 599 (680)
Q Consensus 596 ~p~~ 599 (680)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00048 Score=52.86 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=45.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIEL-DAV-VWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
....+.+.|++++|.+.+++. ...| +.. .+..++.++...|++++|+..|+++++.+|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667778888888877776 3333 456 677777777778888888888888888888776655
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.001 Score=54.47 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 005732 514 LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSG---HLHEAEEFIKDM-PIE-L--DAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
....+.+-|.+....+. ++..+.-.+..++.+.+ +.++++.++++. ... | +...+..+..++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555555554443 56666666666666666 455666666665 222 3 2445555666666777777777
Q ss_pred HHHHHHHcCCCCCCch
Q 005732 587 RAAQKMFGLDKKPISA 602 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~~ 602 (680)
++++.+++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 7777777777766433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.002 Score=64.41 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----CCCCC
Q 005732 535 EHYTCVVDLLGRSGHLHEAEEFIKDM---------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFG-----LDKKP 599 (680)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 599 (680)
.+++.|..+|...|++++|+.++++. +..|+ ..+++.|+..|...|++++|+.+++++++ ++|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44556666666666666666666554 13443 55688888899999999999999999877 56777
Q ss_pred Cch
Q 005732 600 ISA 602 (680)
Q Consensus 600 ~~~ 602 (680)
|.+
T Consensus 421 p~~ 423 (433)
T 3qww_A 421 PYI 423 (433)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0024 Score=48.84 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCc-hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 575 ACWFWMNMEVGERAAQKMFGLDKKPIS-AYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 575 ~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555555555544 5555555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.011 Score=56.59 Aligned_cols=45 Identities=16% Similarity=0.030 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHH--HHcC---ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 005732 463 NVAAWTALMNGY--SHHG---LGSEAVLLFEIMLEQDIVPN-AATFVGVLSAC 509 (680)
Q Consensus 463 ~~~~~~~l~~~~--~~~~---~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 509 (680)
+...|...+++. ...+ ...+|..+|++.++ ..|+ ...+..+..++
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 444455544432 2222 34678889999888 5676 44454444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0046 Score=62.00 Aligned_cols=97 Identities=10% Similarity=-0.067 Sum_probs=65.1
Q ss_pred HHhccCCHHHHHHHHHHHHhc---CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 005732 508 ACVRAGLVNEGMKIFRSMKSY---GVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM---------PIELD-AVVWG 570 (680)
Q Consensus 508 ~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 570 (680)
.+...|++++|.+++++..+. -+.|+ ..+++.++.+|...|++++|+.++++. +..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666666521 11221 345666777777777777777776654 23443 55688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHc-----CCCCCCchHH
Q 005732 571 ALLSACWFWMNMEVGERAAQKMFG-----LDKKPISAYV 604 (680)
Q Consensus 571 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 604 (680)
.|+..|...|++++|+.+++++++ ++|++|.+-.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888999999999999999999877 5788765543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0009 Score=51.49 Aligned_cols=67 Identities=3% Similarity=-0.127 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+...+..+..+|.+.|++++|++.|++. ...| +...|..++.++...|++++|+..+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4555666666777777777777777665 2233 46677777777888888888888888887776543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.002 Score=58.93 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=69.9
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHcCCCCC-CchHHHHHHHHHhc-CCchHH
Q 005732 551 HEAEEFIKDM-PIELD---AVVWGALLSACWF-----WMNMEVGERAAQKMFGLDKKP-ISAYVILSNIYAVL-GKWGKK 619 (680)
Q Consensus 551 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 619 (680)
..|...+++. .+.|+ ...|..++..|.. .|+.++|.++|++++++.|+. ..+++.+++.+++. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555555554 45665 5567777777777 499999999999999999975 89999999999885 999999
Q ss_pred HHHHHHHhhCCCccCCc
Q 005732 620 MDIRKRLTHLEVKKDPG 636 (680)
Q Consensus 620 ~~~~~~~~~~~~~~~~~ 636 (680)
.+.+++.....+..+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999999987776666
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0044 Score=50.78 Aligned_cols=69 Identities=10% Similarity=-0.035 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 563 ELDAVVWGALLSACWFWM---NMEVGERAAQKMFGLD-K-KPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.++..+...+.+++.+.+ ++++++.+++.+++.+ | ++...++.|+.++.+.|++++|.++++++.+..+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 356677777777777766 5557777777777766 5 3456677777777777777777777777766443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.013 Score=56.08 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHh--cc---CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh---cC-C-------hHHHHHHHHh
Q 005732 496 VPNAATFVGVLSACV--RA---GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR---SG-H-------LHEAEEFIKD 559 (680)
Q Consensus 496 ~p~~~~~~~ll~~~~--~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~-------~~~A~~~~~~ 559 (680)
..+...|...+++.. .. .+..+|..+|++..+..+. ....|..+..+|.- .+ . ...+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 445666666665543 33 3457899999999975422 23445444443321 11 1 1122222223
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 560 MP-IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 560 ~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+. .+.++.++..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++.....+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 32 3457888888888888889999999999999999975 46778999999999999999999999887654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.012 Score=45.43 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHH
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILS 607 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 607 (680)
+...++..++.++.+.|+++.|..++++++++.|+++.+...+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 35677888999999999999999999999999999976655544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.50 E-value=1.3 Score=48.16 Aligned_cols=261 Identities=13% Similarity=0.009 Sum_probs=137.7
Q ss_pred HhccCChhhHHHHHHHHHHhCCCCC--chHHHHHHHHhhcCCCHHHHHHHHhhcC-CCc--------c--chhhHHHHHH
Q 005732 228 CARLGAFCEGKVVHGLLIKCGFEFD--ESIGGALIEFYCGCEAFDGAMRVYDRLE-NPC--------L--NASNSLINGL 294 (680)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~--------~--~~~~~l~~~~ 294 (680)
....|+.+++..+++..+..+-..+ ...-..+.-+...+|.-+++..++.... .++ . ..-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777777776665543210112 2223333344455555556777666544 111 1 1112233333
Q ss_pred HhcCC-HHHHHHHHHHhcc-CChhH--HH--HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHH
Q 005732 295 ISMGR-IEDAELIFNRLTE-ANSIS--YN--SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNS 368 (680)
Q Consensus 295 ~~~g~-~~~a~~~~~~~~~-~~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 368 (680)
+..|. -+++...+..+.. .+... .. .+...+.-.|+.+....++..+.... ..+..-.-.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--------------~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--------------HGNITRGLA 529 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--------------CHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--------------cHHHHHHHH
Confidence 33343 2344555555443 33221 11 23334556677776677766654422 223333444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChh-hH---HHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHH
Q 005732 369 MISGYVQNNLHEKALQLYMTMRKLAIDRTRS-TF---SVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYS 444 (680)
Q Consensus 369 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (680)
+.-++...|+.+.+..+++.+... .++. -| ..+.-+|+..|+......++..+.+.. ..+..-...+.-++.
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI 605 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFV 605 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhh
Confidence 555566788888888888888763 2222 22 234557888899888888888887653 334443333334444
Q ss_pred hcCChHHHHHHHhcCCC-CCHHHHHHHH--HHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005732 445 RCGSINDAQASFSSISS-PNVAAWTALM--NGYSHHGLG-SEAVLLFEIMLEQDIVPNAATFVGVLSAC 509 (680)
Q Consensus 445 ~~g~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 509 (680)
..|+.+.+.++++.+.+ .|........ -+....|.. .+++.++..+.. .+|..+-...+.++
T Consensus 606 ~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 606 LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp TSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 56777777777775543 4444433333 333444444 578888888875 34554443333333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.084 Score=41.43 Aligned_cols=141 Identities=10% Similarity=0.000 Sum_probs=100.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
+.-.|..++..++..+.... .+..-|+-++--...+-+-+-..++++.+=+ ..| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHH
Confidence 34567788888888887763 2455566666555555555555555444331 222 2346666777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 554 EEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
...+-.++ .+....+..+..+...|.-++-..++..++...+-+|+....++.+|.+.|+..+|.+++++.=++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77666664 345666777788889999999999999987777777899999999999999999999999999998864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.13 Score=56.89 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=87.8
Q ss_pred hcCCCHHHHHH-HHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcC
Q 005732 264 CGCEAFDGAMR-VYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMP 342 (680)
Q Consensus 264 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 342 (680)
...+++++|.+ ++..+. +......++..+.+.|..+.|+++.+.. ..-.......|+++.|.++.+.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~- 678 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE- 678 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC-
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh-
Confidence 34566666666 443221 0111255556666667777666554211 11122345678888888887654
Q ss_pred cCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHH
Q 005732 343 HRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHA 422 (680)
Q Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (680)
.+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+....+.+
T Consensus 679 ------------------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 679 ------------------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 3467888899999999999999988887743 3344444455666666555555
Q ss_pred HHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 005732 423 HLVKTPFESNVYVGTSLVDMYSRCGSINDAQASF 456 (680)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (680)
.....|. ++....+|.+.|++++|++++
T Consensus 732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 732 DAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 5544441 233344566677777776654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.023 Score=42.53 Aligned_cols=69 Identities=6% Similarity=0.030 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 531 VPTLEHYTCVVDLLGRSGH---LHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+.++..+..+..++...++ .++|..++++. ...| ++.....++..+...|++++|+..|+++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3466677777777755444 68888888877 4445 67788888888999999999999999999999984
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.022 Score=44.76 Aligned_cols=87 Identities=11% Similarity=-0.026 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 005732 514 LVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE---AEEFIKDM-PIE-L--DAVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 586 (680)
....+.+-+.+....|. ++..+--.+..++.+..+..+ ++.++++. ... | .......|..++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444443332 444444445555555554444 55555554 211 2 2233344444555566666666
Q ss_pred HHHHHHHcCCCCCCc
Q 005732 587 RAAQKMFGLDKKPIS 601 (680)
Q Consensus 587 ~~~~~~~~~~p~~~~ 601 (680)
++++.+++.+|++..
T Consensus 95 ~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 666666666665533
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.015 Score=44.76 Aligned_cols=66 Identities=18% Similarity=0.026 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 564 LDAVVWGALLSACWFWMNMEVGERAAQKMFGLD-------KKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.++..+..++..+...|++..|...++.+++.. +..+.++..|+.++.+.|++++|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456667788889999999999999999998853 233567999999999999999999999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.045 Score=60.57 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 005732 498 NAATFVGVLSACVRAGLVNEGMKIFRSM 525 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 525 (680)
+...|..+...+.+.|+++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555555555555555444443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=1.7 Score=45.39 Aligned_cols=113 Identities=9% Similarity=-0.038 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 005732 479 LGSEAVLLFEIMLEQDIVPNAAT----FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAE 554 (680)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (680)
+.+.|..+|....... ..+... ...+.......+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765432 122222 1222222333442344555555443322 23333333444445667777777
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 555 EFIKDMPIEL--DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 555 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+.|+.|+..+ ...-..-+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777774332 233334455556667777777777777764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.16 Score=39.83 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcC
Q 005732 366 WNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 366 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
.+..++.+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34444444444555544444444322 234444444445555555555555555555555444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.068 Score=41.99 Aligned_cols=68 Identities=10% Similarity=-0.064 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHcCC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 563 ELDAVVWGALLSACWFWMNMEV---GERAAQKMFGLD-K-KPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
.++..+-..+.+++.+.++... ++.+++.+++.+ | ......+.|+..+.+.|++++|.+.++.+++..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3666666677777766554443 777777777665 4 344566677777777777777777777776543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.059 Score=42.46 Aligned_cols=66 Identities=8% Similarity=-0.054 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 563 ELDAVVWGALLSACWFWM---NMEVGERAAQKMFGLDKK-PISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.|++.+--.+.+++.+.. +..+++.+++.+++.+|. ....++.|+.++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555555555555543 234555566666655553 244555666666666666666666666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.24 Score=39.60 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..|..++.+.|++++|.++.+.+++.+|++
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 333444445555555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.35 Score=40.64 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=53.6
Q ss_pred HHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005732 443 YSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIF 522 (680)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 522 (680)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3455666666666666666666666655432 122222334445555544444
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005732 523 RSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP 561 (680)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (680)
+.....| -++.-...+.-.|+++++.+++.+.+
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4433322 12333344555666666666666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=4.6 Score=42.19 Aligned_cols=344 Identities=10% Similarity=-0.022 Sum_probs=177.1
Q ss_pred HHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHH
Q 005732 25 ITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGK 104 (680)
Q Consensus 25 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~ 104 (680)
+..+.+++++.....++.. +..+...-.....+....|+...|......+...|. ..+.....++..+...|.+.
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt--- 153 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD--- 153 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC---
T ss_pred HHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC---
Confidence 4455566777777776655 333444444456666667776667666666665542 23444455555544433221
Q ss_pred HHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCee--
Q 005732 105 QIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVV-- 182 (680)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 182 (680)
....-.-+......|+...|..+...+..........++.... +...+....... .++..
T Consensus 154 --------------~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~ 215 (618)
T 1qsa_A 154 --------------PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTR 215 (618)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHH
T ss_pred --------------HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhH
Confidence 1112222344555667777777766663222222233332222 222333333322 22211
Q ss_pred -eHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHH----HHHHHhccCChhhHHHHHHHHHHhCCCCCchHHH
Q 005732 183 -VWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDS----VIRACARLGAFCEGKVVHGLLIKCGFEFDESIGG 257 (680)
Q Consensus 183 -~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 257 (680)
.+...+.-+.+. + .+.|...|......... +...... +.......+...++...+...... ..+.....
T Consensus 216 ~~~~~~~~rlar~-d-~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e 289 (618)
T 1qsa_A 216 QMAAVAFASVARQ-D-AENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHHHHH-C-HHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHH
T ss_pred HHHHHHHHHHHhc-C-HHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHH
Confidence 122233344443 5 79999999988765432 3333222 222333344345566666654433 23433444
Q ss_pred HHHHHhhcCCCHHHHHHHHhhcCC---CccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 258 ALIEFYCGCEAFDGAMRVYDRLEN---PCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
-.+....+.|+++.|...|+.+.. ....+..-+.+++...|+.++|..+|+.+..+. ..|..+. ..+.|..-..
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~-~fYg~lA--a~~Lg~~~~~ 366 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR-GFYPMVA--AQRIGEEYEL 366 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHHHHH--HHHTTCCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHH--HHHcCCCCCC
Confidence 455556678999999999999982 234455667788889999999999999998753 2343332 2223321000
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPV---TWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCL 411 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 411 (680)
....... ...... .-...+..+...|....|...+..+... .+......+.......
T Consensus 367 -----~~~~~~~------------~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~ 426 (618)
T 1qsa_A 367 -----KIDKAPQ------------NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNN 426 (618)
T ss_dssp -----CCCCCCS------------CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCh------------hHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Confidence 0000000 000110 1122345577889999998888877653 2233333333334455
Q ss_pred CChHHHHHH
Q 005732 412 GSLQQGQLL 420 (680)
Q Consensus 412 ~~~~~a~~~ 420 (680)
|..+.+...
T Consensus 427 ~~~~~~v~~ 435 (618)
T 1qsa_A 427 QWWDLSVQA 435 (618)
T ss_dssp TCHHHHHHH
T ss_pred CChHHHHHH
Confidence 555554433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.80 E-value=5.8 Score=43.25 Aligned_cols=277 Identities=10% Similarity=0.001 Sum_probs=149.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc----CCh--hHHHHHHHHHhccCChhhHHHHHhhcCcCCc-chhhhHhhhcccCCCCh
Q 005732 291 INGLISMGRIEDAELIFNRLTE----ANS--ISYNSMIKGYAVYGQVDDSKRLFEKMPHRSI-ISLNTMISVIPEMERNP 363 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~----~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 363 (680)
.-+.+..|+.++++..+..... .+. ..-..+.-+....|..+++..++......+- ...+. ..+..
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~-------~~~~i 453 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDE-------DVDVL 453 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCH-------HHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccccccc-------ccHHH
Confidence 3456677888888888877664 122 2333344445566665667776666544210 00000 00112
Q ss_pred hHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 364 VTWNSMISGYVQNNL-HEKALQLYMTMRKLAIDRTR--STFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 364 ~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
..-.++.-+++-.|. -+++.+.+..+....- +.. ..-..+...+...|+.+....++..+.+.. ..+..-...+.
T Consensus 454 r~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalg 531 (963)
T 4ady_A 454 LHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHH
Confidence 222333344444443 3466777777665321 111 112233344567788888888888776643 22222233333
Q ss_pred HHHHhcCChHHHHHHHhcCCC-CCHH-HHH---HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 005732 441 DMYSRCGSINDAQASFSSISS-PNVA-AWT---ALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLV 515 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 515 (680)
-++...|+.+.+..+++.+.. .++. -|. ++.-+|+..|+.....++++.+.+.. ..+......+.-++...|+.
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 344467888887777776652 3433 232 23446778888877777998888742 22233333333344556776
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005732 516 NEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHL-HEAEEFIKDMPIELDAVVWGALLSACWF 578 (680)
Q Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 578 (680)
+.+.++++.+.+.+ .|....-..+.-+....|+. .+|++.+..+...++..+-...+.++..
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 66777776666533 34433333444444445544 6788888888667776666555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.39 E-value=1.4 Score=37.01 Aligned_cols=130 Identities=9% Similarity=0.057 Sum_probs=87.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005732 472 NGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLH 551 (680)
Q Consensus 472 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (680)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3446789999998887665 3678899999999999999999999888764 445566677778877
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 552 EAEEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 552 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.-.++-+....+-+ ++....++...|+++++.++|.+.-+ +..-.......|-.+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 76665554421222 23344456678999999998876422 2222222233577778888877664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.14 Score=54.51 Aligned_cols=53 Identities=8% Similarity=-0.014 Sum_probs=48.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 574 SACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 574 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
..|...|+++.|+.+.++++..-|.+-.+|..|+.+|...|+|+.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44667899999999999999999999999999999999999999999998876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=1.6 Score=40.07 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-CChH
Q 005732 481 SEAVLLFEIMLEQDIVPN---AATFVGVLSACVRA-----GLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRS-GHLH 551 (680)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 551 (680)
..|...+++..+ +.|+ ...|..+...|... |+.++|.+.|++....+..-+..++..+.+.+++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 455666666666 4555 34566666656553 66666666666666543322234444444444442 4444
Q ss_pred HHHHHHHh
Q 005732 552 EAEEFIKD 559 (680)
Q Consensus 552 ~A~~~~~~ 559 (680)
+|.+++++
T Consensus 258 ~a~~~L~k 265 (301)
T 3u64_A 258 GFDEALDR 265 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.27 Score=39.61 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhccCCH------HHHHHHHHHHHhcCCCCCh-hHHHHHHHH------HHhcCChHHHHHHHHhC-C--
Q 005732 498 NAATFVGVLSACVRAGLV------NEGMKIFRSMKSYGVVPTL-EHYTCVVDL------LGRSGHLHEAEEFIKDM-P-- 561 (680)
Q Consensus 498 ~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~-~-- 561 (680)
|..+|...+....+.|++ ++..++|++.... ++|+. ..|...+.. +...++.++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 466777777777777877 7777788777743 33432 111121111 12345666666666655 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 562 IELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 562 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
.+- +..|.....--.++|+...|..++.+++.+.|.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 111 5555555555556667777777777766666665
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.60 E-value=4.9 Score=37.83 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=70.9
Q ss_pred hhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHH----HHHHhCCCCCCHhhHHHHHHHHhc
Q 005732 21 TNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLV----STMHRSNVKLNETTFSTILSVCAQ 96 (680)
Q Consensus 21 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~t~~~ll~~~~~ 96 (680)
|.++..-|.+++++++|.+++ |+ -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL----------~~-GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDIL----------AS-VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH----------HH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHH----------HH-HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 444555555555555555543 22 233455566666555544 444556777777777777766665
Q ss_pred cCChH-HHHHHHHHH----HHhC--CCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHh
Q 005732 97 LNSLI-DGKQIHCLV----LKSG--YECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQ 162 (680)
Q Consensus 97 ~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 162 (680)
...-+ .-..+.+.+ .+.| ..-|+..+..+...|.+.+++.+|+..|-.-..+.+..+..++..+..
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 44211 112233333 3333 345677777778888888888888777742222223455444444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.34 E-value=0.54 Score=37.95 Aligned_cols=97 Identities=8% Similarity=0.158 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHCCCCCCH----HHHHHHHHHH---hccCCHHHHHHHHHHHHhc
Q 005732 462 PNVAAWTALMNGYSHHGLG------SEAVLLFEIMLEQDIVPNA----ATFVGVLSAC---VRAGLVNEGMKIFRSMKSY 528 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~---~~~g~~~~A~~~~~~~~~~ 528 (680)
.|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|..+.--| ...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555666666655555666 5666666666553 34431 1222222212 2245666666666666543
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 529 GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
+-.. ...|-.....-.+.|++..|.+++.+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 444544445555666666666666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.27 E-value=4.4 Score=37.88 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=58.3
Q ss_pred HHHHcCCChhHHHHH----HHHHHhCCCCCCHhhHHHHHHHHhccCC-hHHHHHHHHHH----HHhC--CCCcchhhhhH
Q 005732 57 CGYSKWAKFDESLSL----VSTMHRSNVKLNETTFSTILSVCAQLNS-LIDGKQIHCLV----LKSG--YECFEFVGSGL 125 (680)
Q Consensus 57 ~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~t~~~ll~~~~~~~~-~~~a~~~~~~~----~~~~--~~~~~~~~~~l 125 (680)
..+.+.|+...|-++ ++...+.+++++..+...++..+..... -..-.++.+.+ .+.| ...++..+..+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 345556666665554 4445556777777777777666554321 11122333333 3333 23466777778
Q ss_pred HHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHh
Q 005732 126 LFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQ 162 (680)
Q Consensus 126 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 162 (680)
...|.+.|++.+|+..|-.-...+...+..++..+..
T Consensus 141 a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 8888888888887776653222234444444443333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.46 E-value=1.7 Score=34.27 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=48.7
Q ss_pred CCCChhHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 530 VVPTLEHYTCVVDLLGRSGHL---HEAEEFIKDM-PIEL--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
..|++.+--.+..++.+..+. .+++.+++++ ...| ....+..|..++.+.|++++|.++.+.+++.+|++..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 344555544555555555443 2455555554 2223 355566677789999999999999999999999985543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=4.5 Score=32.35 Aligned_cols=69 Identities=9% Similarity=-0.053 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 563 ELDAVVWGALLSACWFWM---NMEVGERAAQKMFGLDKK-PISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 563 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
.|+..+-..+.+++.++. +..+++.+++.+++..|. .....+.|+..+.+.|++++|.++.+.+++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 577888888888888765 456788888888888775 456688888999999999999999998887654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.00 E-value=7.2 Score=38.94 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHhc-----CCCchHhHHHHHHHHHHhcCChHHHHHHHhc
Q 005732 412 GSLQQGQLLHAHLVKT-----PFESNVYVGTSLVDMYSRCGSINDAQASFSS 458 (680)
Q Consensus 412 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (680)
|+++.|.+.+..+.+. ...........++..+...|+++...+.+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~ 81 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL 81 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6677777766555542 2344556667777777777877776655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.53 E-value=2.3 Score=35.06 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 005732 601 SAYVILSNIYAVLGKWGKKMDIRKRL 626 (680)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (680)
+.-+.++.+|...|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 56678999999999999999998765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.38 E-value=9.1 Score=43.75 Aligned_cols=186 Identities=12% Similarity=0.037 Sum_probs=117.7
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---------------------
Q 005732 403 VLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--------------------- 461 (680)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------- 461 (680)
.++..+...+..+.+.++.... +.++...-.+..++..+|++++|.+.|++...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555566666666665544332 33444445567788889999999999977642
Q ss_pred -----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 005732 462 -----PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNA----ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVP 532 (680)
Q Consensus 462 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 532 (680)
.-..-|..++..+.+.+.++.++++-+..++....-+. ..|..++.++...|++++|...+-.+.+.. .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 01233667788888899999999888777763221121 246778889999999999999888777543 3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHH------------HHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHc
Q 005732 533 TLEHYTCVVDLLGRSGHLHEAEE------------FIKDM-----PIELDAVVWGALLSACWFWMNMEVG-ERAAQKMFG 594 (680)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~------------~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 594 (680)
-..++..|+..++..|..+.-.. ++..- .....+..|..|..-....||+.+| ..+|+++.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 45677888888877776554332 22211 0122234455555555567776544 556777766
Q ss_pred C
Q 005732 595 L 595 (680)
Q Consensus 595 ~ 595 (680)
+
T Consensus 1050 L 1050 (1139)
T 4fhn_B 1050 Y 1050 (1139)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.01 E-value=11 Score=32.82 Aligned_cols=122 Identities=3% Similarity=-0.057 Sum_probs=51.0
Q ss_pred hHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005732 35 VTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSG 114 (680)
Q Consensus 35 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 114 (680)
+....+.+.+..++...-...+.++...+.. .+...+..+... ++...-...+.+++..++.+....+.+.+
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l---- 90 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKAL---- 90 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHT----
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHH----
Confidence 3333444444455555555555556555553 233333333322 34444444445555444432222222211
Q ss_pred CCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcC
Q 005732 115 YECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCN 164 (680)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (680)
-.++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.|
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 12344444444555555554433333333333333333333344443333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.58 E-value=17 Score=35.36 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=25.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh-cCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKS-YGVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
++..|...|++.+|.+++.++.+ ..-..+ ..++..-+..|...+++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44555555555555555555552 111111 122333344455555555555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=1.1 Score=43.95 Aligned_cols=56 Identities=7% Similarity=-0.077 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 572 LLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 572 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
++.++...|+++++...++.++..+|-+-..+..++.+|.+.|+..+|++.|+++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445556666666666666666666665566666666666666666666665544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.09 E-value=19 Score=33.52 Aligned_cols=168 Identities=10% Similarity=0.054 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVL----LFEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|.. +++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778888899998887532 2234556777666555 3555566788888888777777665
Q ss_pred ccCCHH-HHHHHHHHHH----hcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 005732 511 RAGLVN-EGMKIFRSMK----SYG--VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFW---M 580 (680)
Q Consensus 511 ~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g 580 (680)
.-..-+ .=.++++++. +.| ..-++.....+...|.+.|++.+|...|- .+..-++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 422111 1123333333 222 23467778888888888888888888776 32222455555555444333 3
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHH-HHHHHhcCCchHHHHHHHHHhhC
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVIL-SNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...++ ..+... +--|...|+...|..+++...++
T Consensus 183 ~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 32222 222222 33455788999999998876643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.37 E-value=2 Score=45.69 Aligned_cols=123 Identities=10% Similarity=0.049 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcch-HH-HHHHHHhccCC-hhhHHHHHHHHHHh------CCCCCc---
Q 005732 186 KLISGYAKSVDGCEKALKLFRWMRESGENMPNEYT-FD-SVIRACARLGA-FCEGKVVHGLLIKC------GFEFDE--- 253 (680)
Q Consensus 186 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~-~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~--- 253 (680)
.++..+...+.-++.|+++|+++.+... .... |. .++..+...++ --+|.+++.+.++. ..++..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p---~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDP---IHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3444444454424779999999988652 3222 22 23333333322 22344444443321 112111
Q ss_pred --------hHHHHHHHHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhc
Q 005732 254 --------SIGGALIEFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLT 311 (680)
Q Consensus 254 --------~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (680)
.....=.+.+...|+++.|+++-++.. |.+..+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222445666888999999888877 7777888888999999999999888888775
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.16 E-value=25 Score=33.03 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLL----FEIMLEQDIVPNAATFVGVLSACV 510 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 510 (680)
+|.++..-|.+.+++++|.+++.. =...+.+.|+...|..+ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778888999999887532 12334566766555444 355556778888887777777665
Q ss_pred ccCC--HHHHHHHHHHHH----hcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005732 511 RAGL--VNEGMKIFRSMK----SYG--VVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 511 ~~g~--~~~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 582 (680)
.... ++. ..+.+++. +.| ..-++.....+...|.+.+++.+|...|- .+..+++..+..++..+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 5432 222 22333332 222 34567888888999999999999998884 3545555666555555444332
Q ss_pred HHHHHHHHHHHcCCCCCCchHHH-HHHHHHhcCCchHHHHHHHHHhh
Q 005732 583 EVGERAAQKMFGLDKKPISAYVI-LSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
|.....+.. .+--|...|+...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 233333333 33456678899999998877665
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=84.95 E-value=18 Score=31.08 Aligned_cols=18 Identities=6% Similarity=-0.153 Sum_probs=7.4
Q ss_pred cchhhhhHHHHHHcCCCh
Q 005732 118 FEFVGSGLLFFYANCFEI 135 (680)
Q Consensus 118 ~~~~~~~l~~~~~~~g~~ 135 (680)
+..+....+.++.+.|+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCcH
Confidence 333334444444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.10 E-value=32 Score=33.37 Aligned_cols=239 Identities=10% Similarity=0.027 Sum_probs=115.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChh-----hHHHHHHHhcccCChHHHHHHHHHHHhc--CCCchHhHHHHHH
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRS-----TFSVLFHACSCLGSLQQGQLLHAHLVKT--PFESNVYVGTSLV 440 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~ 440 (680)
-++..|...|++.+|.+++.++.+.--..|.. .+..-+..|...++..++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i- 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL- 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH-
Confidence 57888999999999999999887643222322 2444555666777777777777665532 222222222111
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHhcc
Q 005732 441 DMYSRCGSINDAQASFSSISSPNVAAWTALMNGYS-HHGLGSEAVLLFEIMLE----QDIVPN---AATFVGVLSACVRA 512 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~----~~~~p~---~~~~~~ll~~~~~~ 512 (680)
.. .-...+. ..+++..|...|-+..+ .| .|. ...|..+.. ...
T Consensus 183 ~~--------------------------~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~a-Ll~- 233 (394)
T 3txn_A 183 DL--------------------------QSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCK-IML- 233 (394)
T ss_dssp HH--------------------------HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHH-HHT-
T ss_pred HH--------------------------HhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHH-HHc-
Confidence 10 0111233 44555555554443321 11 111 122322222 222
Q ss_pred CCHHHHHHHHH-HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005732 513 GLVNEGMKIFR-SMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP--IELDAVVWGALLSACWFWMNMEVGERAA 589 (680)
Q Consensus 513 g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 589 (680)
++..+...++. .....-..|....+..++.++ ..+++.+..++++... +..|+.....+ ..+.+ .--...+
T Consensus 234 ~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~----~Ir~~~L 307 (394)
T 3txn_A 234 GQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD----TMLEQNL 307 (394)
T ss_dssp TCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH----HHHHHHH
T ss_pred CCHHHHHHHhccccccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH----HHHHHHH
Confidence 22222222221 111111234444455555544 5678888788877763 34455422111 11100 0001122
Q ss_pred HHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeEEEE
Q 005732 590 QKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRVHAF 649 (680)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (680)
.++. .|=..-....++..+.- ..+++...+-+|...|.- .....+.++.+...
T Consensus 308 ~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I---~a~IDq~~giv~~~ 360 (394)
T 3txn_A 308 CRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF---SGILDQGEGVLIVF 360 (394)
T ss_dssp HHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS---CEEEETTTTEEEEC
T ss_pred HHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe---eEEEcCCCCEEEEC
Confidence 2333 34444556677766643 678999999999988753 22344445555544
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=83.92 E-value=21 Score=30.97 Aligned_cols=105 Identities=11% Similarity=0.010 Sum_probs=40.6
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHh
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLIS 296 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 296 (680)
+...-...+.++.+.++.+....+.+ +.+ .++..+....+.++.+.|+.+....+.+-+..++.......+.++.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444455544444332222222 221 23444444444444444443222222222223333333444455555
Q ss_pred cCCHHHHHHHHHHhcc-CChhHHHHHHHHHh
Q 005732 297 MGRIEDAELIFNRLTE-ANSISYNSMIKGYA 326 (680)
Q Consensus 297 ~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~ 326 (680)
.+.. ++...+..+.. ++...-...+.++.
T Consensus 170 ~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 170 IGGE-RVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp HCSH-HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5542 23333333322 44444444444433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.76 E-value=5.5 Score=29.25 Aligned_cols=51 Identities=10% Similarity=-0.060 Sum_probs=35.1
Q ss_pred HHHhcCChhhHHHHhccCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 005732 159 GYVQCNLMSDAFDVFIKMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESG 212 (680)
Q Consensus 159 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 212 (680)
.+...|++++|..+.+.+.-||...|-.|-..- .|- ..++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~r--lGl-~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCEWH--LGL-GAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHH--TTC-HHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHHh--ccc-HHHHHHHHHHHHhCC
Confidence 567788888888888888888888887776543 344 455555555666555
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.66 E-value=6.1 Score=29.26 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005732 65 FDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKS 113 (680)
Q Consensus 65 ~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (680)
.-+..+-++.+....+-|++....+.+++|.+.+|+..|.++++-+...
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3355666677777778888888888888888888888888888877644
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.50 E-value=7.8 Score=37.89 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-----hcCCCCChhHH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-----SYGVVPTLEHY 537 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 537 (680)
..++..+...|++++|+..+..+.... .-+...+..++.++.+.|+..+|.+.|+.+. +.|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566777888888888888877643 2267788888888888888888888887765 35777766553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.43 E-value=6.4 Score=29.16 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 005732 482 EAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK-SYGVVPTLEHYTCVV 541 (680)
Q Consensus 482 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 541 (680)
+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++ +.|.. ..+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHH
Confidence 455566666667788888888888888888888888888888888 44333 44565554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.15 E-value=6.2 Score=32.58 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=12.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 005732 540 VVDLLGRSGHLHEAEEFIKDMP 561 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~ 561 (680)
+..+|.+.+++++|+.+++.++
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4455555566666666665553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.80 E-value=1.3 Score=40.00 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 542 DLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
..+.+.|++++|++.+..- +..| |...-..|+..++-.|++++|..-++-+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456778888888776654 3344 67777777888888888888888888888888875
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.61 E-value=44 Score=38.14 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=33.3
Q ss_pred hHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCC
Q 005732 124 GLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMP 177 (680)
Q Consensus 124 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 177 (680)
.++..+...|..+-+.++.... ..++...-.+...+...|++++|.+.|.+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4555556666666666554433 3444444555667778888888888887653
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=81.82 E-value=24 Score=30.23 Aligned_cols=104 Identities=11% Similarity=0.000 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHh
Q 005732 217 NEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLIS 296 (680)
Q Consensus 217 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 296 (680)
+...-...+.++.+.++.+....+.. +.. .++..+-...+.++.+.++.+....+...+..++...-...+.++..
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444555555555554433222222 221 33444444555555555443322222222223333333445555555
Q ss_pred cCCHHHHHHHHHHhc-cCChhHHHHHHHHH
Q 005732 297 MGRIEDAELIFNRLT-EANSISYNSMIKGY 325 (680)
Q Consensus 297 ~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~ 325 (680)
.|..+ +...+..+. .++...-...+.++
T Consensus 165 ~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 165 IGGER-VRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp HCSHH-HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hCchh-HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55433 333333332 24444433333333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.11 E-value=50 Score=32.82 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=117.8
Q ss_pred CChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhc-CCCchHh--HHHHHHHHHHhcCC
Q 005732 377 NLHEKALQLYMTMRKL-----AIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKT-PFESNVY--VGTSLVDMYSRCGS 448 (680)
Q Consensus 377 ~~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~g~ 448 (680)
|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+. |..+... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5678888877666542 23344556778889999999999988877766654 3222221 12222333333333
Q ss_pred h--HHHHHHHhcCCC-------C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhc
Q 005732 449 I--NDAQASFSSISS-------P---NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ--DIVPN---AATFVGVLSACVR 511 (680)
Q Consensus 449 ~--~~A~~~~~~~~~-------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~ 511 (680)
. +.-..+.+.+.. - .......|...+...|++.+|..++..+... |..+. ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 233344444432 1 2234456788899999999999999998742 22211 2456667788899
Q ss_pred cCCHHHHHHHHHHHH----hcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 512 AGLVNEGMKIFRSMK----SYGVVPT--LEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
.+++..|..+++++. .....|+ ...+...+..+...+++.+|.+.|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999875 2222222 345667777888899999998877765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 680 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 5e-05
Identities = 47/359 (13%), Positives = 102/359 (28%), Gaps = 25/359 (6%)
Query: 269 FDGAMRVYDRL--ENP-CLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGY 325
F+ A R +L + P L + R++ + + N + + Y
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----LLAEAY 70
Query: 326 AVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQL 385
+ G V + ++ +L I + + ALQ
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130
Query: 386 YMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSR 445
+ + + ++L +++
Sbjct: 131 NPDLY---------CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 446 CGSINDAQASFS---SISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATF 502
G I A F ++ + A+ L N + AV + L +A
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240
Query: 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTL-EHYTCVVDLLGRSGHLHEAEEFIKDMP 561
+ GL++ + +R ++ + P + Y + + L G + EAE+
Sbjct: 241 GNLACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 562 IELDAVVWGALLSACWFWM--NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGK 618
A N+E R +K + + +A+ L+++ GK +
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 680 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.64 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.6 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.52 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.42 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.36 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.36 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.26 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.24 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.17 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.11 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.08 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.99 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.86 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.82 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.82 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.75 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.64 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.42 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.11 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.06 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.67 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.92 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.57 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.86 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.57 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.5 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.3e-22 Score=199.01 Aligned_cols=372 Identities=12% Similarity=0.049 Sum_probs=254.0
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCH
Q 005732 190 GYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDESIGGALIEFYCGCEAF 269 (680)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (680)
.+.+.|+ +++|.+.|+++.+.. |.+...+..+...+...|++++|...++.+++..
T Consensus 8 ~~~~~G~-~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------- 63 (388)
T d1w3ba_ 8 REYQAGD-FEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------------------- 63 (388)
T ss_dssp HHHHHTC-HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHcCC-HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence 3444455 555555555555443 2144445555555555555555555555555443
Q ss_pred HHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhcc---CChhHHHHHHHHHhccCChhhHHHHHhhcCcCCc
Q 005732 270 DGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTE---ANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSI 346 (680)
Q Consensus 270 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 346 (680)
|.+...+..++.++...|++++|+..+..... .+..............+....+...........
T Consensus 64 -----------p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 131 (388)
T d1w3ba_ 64 -----------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN- 131 (388)
T ss_dssp -----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-
T ss_pred -----------CCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 33333344444445555555555555544444 122223333333333344444433333333222
Q ss_pred chhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHh
Q 005732 347 ISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVK 426 (680)
Q Consensus 347 ~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 426 (680)
.................+....+...+....... +.+...+..+...+...|+.+.|...+....+
T Consensus 132 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 197 (388)
T d1w3ba_ 132 -------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp -------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -------------cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHH
Confidence 2334444555555666667777777666665532 22345566666777777778888777777776
Q ss_pred cCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 005732 427 TPFESNVYVGTSLVDMYSRCGSINDAQASFSSIS---SPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATF 502 (680)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~ 502 (680)
.. +.+...+..+...+...|++++|...++... ..+...+..+...+.+.|++++|+..|+++.+. .|+ ...+
T Consensus 198 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 274 (388)
T d1w3ba_ 198 LD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAY 274 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHH
T ss_pred hC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 65 5566777788888888888888888887665 356677888888999999999999999999884 454 6788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005732 503 VGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWM 580 (680)
Q Consensus 503 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 580 (680)
..+...+...|++++|.+.++...... +.+...+..+...+.+.|++++|++.+++. ...| ++..+..++.++...|
T Consensus 275 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 353 (388)
T d1w3ba_ 275 CNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 888999999999999999999888653 457788888999999999999999999986 5566 5778899999999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCC
Q 005732 581 NMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGK 615 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (680)
++++|+..|+++++++|+++.++..++.+|.+.|+
T Consensus 354 ~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999998885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=8.8e-21 Score=189.97 Aligned_cols=351 Identities=15% Similarity=0.089 Sum_probs=281.8
Q ss_pred HHhhcCCCHHHHHHHHhhcC---CCccchhhHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhH
Q 005732 261 EFYCGCEAFDGAMRVYDRLE---NPCLNASNSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a 334 (680)
..+.+.|++++|.+.|+++. |.+...+..+..++.+.|++++|...+++... | +..++..+...+.+.|++++|
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence 34455566666666666554 44455556677777777788888888877766 4 456888999999999999999
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCCh
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSL 414 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 414 (680)
...+......+ +.+...+..........+....+........... .................+..
T Consensus 87 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (388)
T d1w3ba_ 87 IEHYRHALRLK--------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCH
T ss_pred ccccccccccc--------------cccccccccccccccccccccccccccccccccc-cccccccccccccccccchh
Confidence 99999988765 4556666666666666677777766666665543 33444455555666677788
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIML 491 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 491 (680)
..+...+....... +.+...+..+...+...|+.+.|...+++..+ .+...|..+...+...|++++|+..+++..
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 230 (388)
T d1w3ba_ 152 EEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred hhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhH
Confidence 88888887777665 56677888889999999999999999987653 457788999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHH
Q 005732 492 EQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAVVW 569 (680)
Q Consensus 492 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~ 569 (680)
..+ ..+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.. ..+.+...+
T Consensus 231 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 308 (388)
T d1w3ba_ 231 SLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhh
Confidence 854 3357778888899999999999999999998754 335778889999999999999999999987 345578888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 570 GALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 570 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.8e-14 Score=135.82 Aligned_cols=228 Identities=12% Similarity=0.025 Sum_probs=158.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC
Q 005732 368 SMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG 447 (680)
Q Consensus 368 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (680)
.....+.+.|++++|+..|+++.+.. +-+..++..+..++...|+++.|...+.++.+.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556777777777777777777643 1234456666666666677777777666666554 344455555555555555
Q ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhc
Q 005732 448 SINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN----------------AATFVGVLSACVR 511 (680)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~ 511 (680)
++++|.+.++. +... .|+ .......+..+..
T Consensus 102 ~~~~A~~~~~~-------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (323)
T d1fcha_ 102 LQRQACEILRD-------------------------------WLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 148 (323)
T ss_dssp CHHHHHHHHHH-------------------------------HHHT--STTTGGGCC---------------CTTHHHHH
T ss_pred cccccccchhh-------------------------------HHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence 55555555544 3331 111 0011111222334
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005732 512 AGLVNEGMKIFRSMKSYGV-VPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERA 588 (680)
Q Consensus 512 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 588 (680)
.+.+.+|.+.+.+...... ..+...+..+...+...|++++|++.+++. ...| +...|..++.++...|++++|+..
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHH
Confidence 4567778888887774332 345677788888899999999999999886 3344 588888999999999999999999
Q ss_pred HHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 589 AQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
++++++.+|+++.++..++.+|.+.|++++|++.+++..+..
T Consensus 229 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.3e-13 Score=133.28 Aligned_cols=246 Identities=10% Similarity=0.026 Sum_probs=179.7
Q ss_pred cCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHH
Q 005732 358 EMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGT 437 (680)
Q Consensus 358 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (680)
..|.+..+|..+..++...|++++|...|.+..+.. +-+...+..+...+...|++++|...++.+..... .......
T Consensus 48 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 125 (323)
T d1fcha_ 48 QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVT 125 (323)
T ss_dssp SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccchhhHHHhcc-chHHHHH
Confidence 356678899999999999999999999999998753 23456788888899999999999999999887541 1111100
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHH
Q 005732 438 SLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI-VPNAATFVGVLSACVRAGLVN 516 (680)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~ 516 (680)
....... ..+.......+..+...+.+.+|...+.+..+... .++...+..+...+...|+++
T Consensus 126 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 189 (323)
T d1fcha_ 126 PAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 189 (323)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHh
Confidence 0000000 00011111122233445667788888888876332 234677888888899999999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005732 517 EGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFG 594 (680)
Q Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 594 (680)
+|+..+++..... +-+...|..+..+|.+.|++++|.+.+++. ...| ++..+..++.+|...|++++|+..|+++++
T Consensus 190 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 190 KAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998654 336778889999999999999999999987 4445 588899999999999999999999999999
Q ss_pred CCCCCCch-----------HHHHHHHHHhcCCchHHHHH
Q 005732 595 LDKKPISA-----------YVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 595 ~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~ 622 (680)
++|++... +..+..++...|+.+.+...
T Consensus 269 l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 269 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred hCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98886543 45567778788887766554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3e-09 Score=103.43 Aligned_cols=266 Identities=11% Similarity=0.012 Sum_probs=196.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhcC----C-CchHh
Q 005732 364 VTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKTP----F-ESNVY 434 (680)
Q Consensus 364 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~ 434 (680)
.........+...|++++|++++++..+.....+ ...+..+...+...|++++|...++...+.. . .....
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3444556678899999999999999987532222 1356667788899999999999999887631 1 11234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC----------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCCCH
Q 005732 435 VGTSLVDMYSRCGSINDAQASFSSISS----------P-NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQD----IVPNA 499 (680)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~----~~p~~ 499 (680)
.+..+...+...|++..+...+..... + ....+..+...+...|+++.+...+....... .....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 556677788899999999988876531 1 12355667788899999999999999887632 12234
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSY--GVVPT----LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-----DAV 567 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~ 567 (680)
..+......+...++...+...+.+.... ..... ...+..+...+...|++++|...+++. ...| ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 55666677788899999999888877621 11111 234556677788999999999999987 2222 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc------CCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFG------LDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
.+..+..++...|++++|...+++++. ..|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 566788889999999999999999874 34555667899999999999999999999987653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=5.2e-09 Score=101.69 Aligned_cols=289 Identities=11% Similarity=-0.014 Sum_probs=204.5
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCC-----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERN-----PVTWNSMISGYVQNNLHEKALQLYMTMRKLAI 394 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 394 (680)
.....+...|++++|.+++++..... +.+ ..++..+..++...|++++|+..|++..+...
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~--------------~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~ 82 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEEL--------------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 82 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--------------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--------------cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34556778889999999988876643 222 34677788899999999999999998865321
Q ss_pred -CCC----hhhHHHHHHHhcccCChHHHHHHHHHHHhc----CCC---chHhHHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 005732 395 -DRT----RSTFSVLFHACSCLGSLQQGQLLHAHLVKT----PFE---SNVYVGTSLVDMYSRCGSINDAQASFSSISS- 461 (680)
Q Consensus 395 -~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 461 (680)
.++ ...+..+...+...|++..+...+...... +.. .....+..+...+...|+++.+...+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 162 (366)
T d1hz4a_ 83 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 162 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 111 234556667788899999998888876642 111 1233556677888899999999988876542
Q ss_pred -------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 005732 462 -------PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQ--DIVPN----AATFVGVLSACVRAGLVNEGMKIFRSMKSY 528 (680)
Q Consensus 462 -------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 528 (680)
.....+..+...+...++...+...+.+.... ..... ...+..+...+...|++++|...++.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 242 (366)
T d1hz4a_ 163 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 242 (366)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 23456666777788899999999888776542 11111 234555666778899999999999988744
Q ss_pred CCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 529 GVVPT---LEHYTCVVDLLGRSGHLHEAEEFIKDM-------PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 529 ~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
....+ ...+..+..++...|++++|.+.+++. +..|+ ...+..+...+...|++++|...+++++++.+
T Consensus 243 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 243 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 33222 344556788999999999999998875 33342 45677788899999999999999999988754
Q ss_pred CC---------CchHHHHHHHHHhcCCchHHHHH
Q 005732 598 KP---------ISAYVILSNIYAVLGKWGKKMDI 622 (680)
Q Consensus 598 ~~---------~~~~~~l~~~~~~~g~~~~A~~~ 622 (680)
.. ...+..+...+...++.+++.+-
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 323 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 32 12344555667777888877654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=2.1e-10 Score=110.66 Aligned_cols=265 Identities=9% Similarity=-0.036 Sum_probs=191.2
Q ss_pred hccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHH----------HhCCChHHHHHHHHHHHHCCCC
Q 005732 326 AVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGY----------VQNNLHEKALQLYMTMRKLAID 395 (680)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~----------~~~~~~~~A~~~~~~m~~~~~~ 395 (680)
......++|..+++++.+.+ |.+...|+..-..+ ...|++++|+..++...+.. +
T Consensus 40 ~~~~~~~~al~~~~~~l~~~--------------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-p 104 (334)
T d1dcea1 40 QAGELDESVLELTSQILGAN--------------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-P 104 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred hcccccHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-C
Confidence 33344588999999888765 55666665433332 23345788999999988743 2
Q ss_pred CChhhHHHHHHHhcc--cCChHHHHHHHHHHHhcCCCchHhHH-HHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHH
Q 005732 396 RTRSTFSVLFHACSC--LGSLQQGQLLHAHLVKTPFESNVYVG-TSLVDMYSRCGSINDAQASFSSISS---PNVAAWTA 469 (680)
Q Consensus 396 p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 469 (680)
-+...+.....++.. .++.+++...+..+.+.. +++...+ ......+...+..+.|...++.+.+ .+...|+.
T Consensus 105 k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~ 183 (334)
T d1dcea1 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (334)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 244455555555444 456899999999999886 4444443 4556778889999999999998885 56788999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 005732 470 LMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH 549 (680)
Q Consensus 470 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (680)
+...+.+.|++++|...+.+..+ +.|+.. .+...+...+..+++...+....... +++...+..++..+...|+
T Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~ 257 (334)
T d1dcea1 184 RSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQS 257 (334)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhh
Confidence 99999999999988776665554 223322 22333455566777888888777544 3345556667778888899
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 550 LHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 550 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
+++|.+.+.+. ...| +...+..++.++...|++++|...++++++++|+.+..|..|...+.-
T Consensus 258 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 99999998877 4555 467778888899999999999999999999999988888888776653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.5e-09 Score=102.99 Aligned_cols=224 Identities=11% Similarity=0.057 Sum_probs=167.9
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcC-ChHHHHHHHhcCCC---CCHHHHHHHHHHHH
Q 005732 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCG-SINDAQASFSSISS---PNVAAWTALMNGYS 475 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 475 (680)
.++.+...+.+.+..++|..+++.+++.. |.+...|+....++...| ++++|.+.++.+.+ .+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 45566667778888999999999999887 777778888888888766 48899998887753 56778888888889
Q ss_pred HcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC-----
Q 005732 476 HHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH----- 549 (680)
Q Consensus 476 ~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 549 (680)
+.|++++|+..++++.+. .| +...|..+...+.+.|++++|++.++++.+.++ .+...|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence 999999999999999884 44 478888888888889999999999999887653 356677777666666555
Q ss_pred -hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc--hHHHHHHHHHh--cCCchHHHHH
Q 005732 550 -LHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS--AYVILSNIYAV--LGKWGKKMDI 622 (680)
Q Consensus 550 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~--~g~~~~A~~~ 622 (680)
+++|++.+.++ ...| +...|..+...+. ....+++...++++.++.|++.. .+..++.+|.. .+..+.+...
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 279 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56777777765 4444 5677777766544 44467788888888888877544 34566666654 3677778877
Q ss_pred HHHHhh
Q 005732 623 RKRLTH 628 (680)
Q Consensus 623 ~~~~~~ 628 (680)
+++..+
T Consensus 280 ~~ka~~ 285 (315)
T d2h6fa1 280 LNKALE 285 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=7.2e-10 Score=102.45 Aligned_cols=114 Identities=11% Similarity=-0.087 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHH
Q 005732 378 LHEKALQLYMTMRKLAIDRT---RSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQA 454 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (680)
+.+.++.-+++........+ ..++..+...|.+.|++++|...|++.++.. +.++.++..+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34555566666654321111 1244455566666666666666666666654 4556666666666666666666666
Q ss_pred HHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005732 455 SFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLE 492 (680)
Q Consensus 455 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 492 (680)
.|+++.+ .+..++..+..++...|++++|+..|++..+
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666542 2344566666666666666666666666665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=5.9e-09 Score=98.75 Aligned_cols=207 Identities=10% Similarity=0.079 Sum_probs=159.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccC-ChHHHHHHHHHHHhcCCCchHhHHHHHH
Q 005732 363 PVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTR-STFSVLFHACSCLG-SLQQGQLLHAHLVKTPFESNVYVGTSLV 440 (680)
Q Consensus 363 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 440 (680)
...|+.+...+.+.+.+++|+++++++.+. .|+. ..|+....++...| ++++|...++.+++.. +.+..+|..+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 456777888889999999999999999984 4654 45677777777766 5899999999999887 77888999999
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC--
Q 005732 441 DMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGL-- 514 (680)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~-- 514 (680)
..+.+.|++++|++.++++.+ .+...|..+...+...|++++|+..++++++. .| +...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence 999999999999999998874 56889999999999999999999999999995 45 46677766665555443
Q ss_pred ----HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 005732 515 ----VNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIELDAVVWGALLSAC 576 (680)
Q Consensus 515 ----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 576 (680)
+++|++.+..+.... +.+...|..+...+...| .+++.+.++.. +...+...+..++..+
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 688999998888654 336777777766665544 56666666544 2333455555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=1.9e-08 Score=95.08 Aligned_cols=166 Identities=10% Similarity=0.015 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 005732 463 NVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVD 542 (680)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 542 (680)
+...|...+..+...|+.+.|..+|+++.+.........|...+..+.+.|+.+.|.++|+++...+.. +...|.....
T Consensus 98 ~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~ 176 (308)
T d2onda1 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 334455555555566666666666666655322222334555555555666666666666665543322 2223322222
Q ss_pred H-HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCc----hHHHHHHHHHhcCC
Q 005732 543 L-LGRSGHLHEAEEFIKDM--PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPIS----AYVILSNIYAVLGK 615 (680)
Q Consensus 543 ~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~ 615 (680)
. +...|+.+.|..+|+.+ ..+.++..|...+..+...|++++|..+|+++++..|.++. .|...+..-...|+
T Consensus 177 ~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence 2 22345666666666655 12334556666666666666666666666666665554432 35555555555666
Q ss_pred chHHHHHHHHHhhC
Q 005732 616 WGKKMDIRKRLTHL 629 (680)
Q Consensus 616 ~~~A~~~~~~~~~~ 629 (680)
.+.+.++.+++.+.
T Consensus 257 ~~~~~~~~~r~~~~ 270 (308)
T d2onda1 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=2.3e-08 Score=92.07 Aligned_cols=194 Identities=13% Similarity=0.008 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 005732 434 YVGTSLVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSAC 509 (680)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 509 (680)
.++..+..+|.+.|++++|.+.|++..+ .++.+|+.+..++.+.|++++|+..|+++.+. .|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 3455566677777777777777766552 45666777777777777777777777777763 343 45566666667
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH----hcCCHHH
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMP-IELDAVVWGALLSACW----FWMNMEV 584 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~----~~g~~~~ 584 (680)
...|++++|.+.++...+..+ .+......+...+.+.+..+.+..+..... ..++...+. ++..+. ..+..+.
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 777777777777777665432 233333333334444444443333333221 111111111 111111 1223344
Q ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 005732 585 GERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 585 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (680)
+...+.......|....++..++.+|...|++++|.+.+++..+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 44444444444555555666677777777777777777777665443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=4.9e-08 Score=92.24 Aligned_cols=186 Identities=9% Similarity=0.048 Sum_probs=150.2
Q ss_pred ChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C-HHHHHHHHHHHHHcCChhHHHHHHH
Q 005732 413 SLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISS--P-N-VAAWTALMNGYSHHGLGSEAVLLFE 488 (680)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~ 488 (680)
..+++..++++.++...+.+...+...+..+.+.|+.+.|..+|+.+.+ | + ...|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4578889999998876567777888888999999999999999998754 2 2 4578999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCC
Q 005732 489 IMLEQDIVPNAATFVGVLS-ACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM----PIE 563 (680)
Q Consensus 489 ~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 563 (680)
++.+.+.. +...|..... -+...|+.+.|..+|+.+... .+.+...|..+++.+.+.|+++.|..+|++. +..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99986533 3334433333 344578999999999999965 3456888999999999999999999999986 233
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 005732 564 L--DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPI 600 (680)
Q Consensus 564 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 600 (680)
| ....|...+..-...|+.+.+..+++++.+..|+..
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 3 256788888877889999999999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=5.8e-09 Score=100.28 Aligned_cols=233 Identities=10% Similarity=-0.016 Sum_probs=173.6
Q ss_pred ccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCChhhH-HH
Q 005732 327 VYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNL--HEKALQLYMTMRKLAIDRTRSTF-SV 403 (680)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~-~~ 403 (680)
..|++++|+..++.+.+.+ +.+...|..+..++...++ +++|+..+.++..... ++...+ ..
T Consensus 85 ~~~~~~~al~~~~~~l~~~--------------pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~ 149 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN--------------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYR 149 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC--------------CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhH
Confidence 3445778888888888766 6788888888888777654 7899999999988542 334444 44
Q ss_pred HHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHH
Q 005732 404 LFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEA 483 (680)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 483 (680)
....+...+..+.|...++.+++.. +.+...+..+..++.+.|++++|...++...+....... ....+...+..+++
T Consensus 150 ~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~a 227 (334)
T d1dcea1 150 RFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPNDQS 227 (334)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH-HHHHHHHHCSSCSH
T ss_pred HHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH-HHHHHHHhcchhHH
Confidence 5567778899999999999999887 678888999999999999999887777665542222222 33345666778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005732 484 VLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PI 562 (680)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 562 (680)
...+....... .++...+..+...+...|+.++|...+.+..... +.+...+..++.+|...|++++|.+.+++. ..
T Consensus 228 ~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 228 AWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888753 2234455566667777889999999998887543 235677788899999999999999999988 56
Q ss_pred CC-CHHHHHHHHHHHHh
Q 005732 563 EL-DAVVWGALLSACWF 578 (680)
Q Consensus 563 ~p-~~~~~~~l~~~~~~ 578 (680)
.| +...|..+...+..
T Consensus 306 dP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 306 DPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp CGGGHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhH
Confidence 67 45667777665553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=7.1e-08 Score=75.68 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=67.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchH
Q 005732 541 VDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGK 618 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (680)
...+.+.|++++|+..|++. ...| ++..|..++.++...|++++|+..++++++++|+++.+|..++.++...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45666777777777777776 3333 577777777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhC
Q 005732 619 KMDIRKRLTHL 629 (680)
Q Consensus 619 A~~~~~~~~~~ 629 (680)
|+..+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888777654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.67 E-value=6e-08 Score=85.14 Aligned_cols=106 Identities=9% Similarity=-0.057 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005732 497 PNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLS 574 (680)
Q Consensus 497 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 574 (680)
|+...+......+.+.|++++|+..|+++.... +.+...|..+..+|.+.|++++|+..+++. .+.| +...|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 455555555555666666666666666555433 224455555555555555555555555554 3334 3445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 575 ACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 575 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
++...|++++|+..|+++++++|++...+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 55555555555555555555555443333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.4e-07 Score=72.50 Aligned_cols=106 Identities=11% Similarity=0.021 Sum_probs=84.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-P-IELDAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~ 582 (680)
-...+...|++++|+..|+++.+.. +.+...|..+..+|...|++++|++.+++. . .+.++..|..++.++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3455677788888888888877654 346677888888888888888888888876 3 344788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
++|+..++++++.+|+++.++..+..+-.
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999888887776643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.64 E-value=1.9e-07 Score=87.14 Aligned_cols=154 Identities=10% Similarity=-0.052 Sum_probs=69.1
Q ss_pred HhcccCChHHHHHHHHHHHhc----CCC-chHhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----HHHHHHHHH
Q 005732 407 ACSCLGSLQQGQLLHAHLVKT----PFE-SNVYVGTSLVDMYSRCGSINDAQASFSSISS-----PN----VAAWTALMN 472 (680)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~ 472 (680)
.|...+++++|...|.++.+. +-+ .-..+|..+..+|.+.|++++|.+.++.... .+ ...+..+..
T Consensus 46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 344455555555555444432 101 1123444455555555555555555544321 11 223334444
Q ss_pred HHHH-cCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh------hHHHHH
Q 005732 473 GYSH-HGLGSEAVLLFEIMLEQ----DIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTL------EHYTCV 540 (680)
Q Consensus 473 ~~~~-~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 540 (680)
.|.. .|++++|++.+++..+. +-.+. ..++..+...+...|++++|.+.++++......... ..+...
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence 4432 36666666666555431 11111 233455555566666666666666665532211110 112233
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 005732 541 VDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (680)
+..+...|+++.|.+.+++.
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 33444555666666555554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=9.7e-07 Score=76.06 Aligned_cols=140 Identities=12% Similarity=0.005 Sum_probs=102.6
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 005732 440 VDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEG 518 (680)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A 518 (680)
...+...|+++.|.+.|.++..++...|..+..+|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 445677889999999999888888888888888999999999999999998884 454 67788888888889999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 005732 519 MKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDK 597 (680)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 597 (680)
.+.|++............| ...| ...+++ ..++..+..++...|++++|.+.+++++++.|
T Consensus 90 ~~~~~kAl~~~~~n~~~~~-------~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDY-------KILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHTTTTCSEEEC-------GGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCccCchHHH-------HHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888887643211110000 0000 001111 34556777788899999999999999999988
Q ss_pred CC
Q 005732 598 KP 599 (680)
Q Consensus 598 ~~ 599 (680)
++
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 86
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.60 E-value=5.7e-08 Score=75.49 Aligned_cols=89 Identities=13% Similarity=-0.078 Sum_probs=80.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCc
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKW 616 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 616 (680)
.+...+.+.|++++|+..+++. ...| ++..|..++.++.+.|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788899999999999987 4445 6889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 005732 617 GKKMDIRKRLT 627 (680)
Q Consensus 617 ~~A~~~~~~~~ 627 (680)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=1.6e-07 Score=82.37 Aligned_cols=96 Identities=9% Similarity=-0.010 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH
Q 005732 462 PNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV 540 (680)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 540 (680)
|+...+......+.+.|++++|+..|+++++. .| +...|..+..+|.+.|++++|+..|+++.+.. +-+...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 55556666677777788888888888777774 34 46667777777778888888888887777543 2246667777
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 005732 541 VDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (680)
..+|.+.|++++|+..|+++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 77788888888887777765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=6.7e-07 Score=74.58 Aligned_cols=117 Identities=6% Similarity=-0.081 Sum_probs=91.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNM 582 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 582 (680)
....|.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|++.|+++ ...| +...|..++.++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456777888888888888888654 336777888888888888888888888877 3344 678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHH--hcCCchHHHHH
Q 005732 583 EVGERAAQKMFGLDKKPISAYVILSNIYA--VLGKWGKKMDI 622 (680)
Q Consensus 583 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 622 (680)
++|...++++++++|+++.++..+..+.. ..+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888877766543 44556666654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=6.7e-07 Score=83.29 Aligned_cols=190 Identities=11% Similarity=0.001 Sum_probs=131.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HHHHH
Q 005732 438 SLVDMYSRCGSINDAQASFSSISS-----PN----VAAWTALMNGYSHHGLGSEAVLLFEIMLEQDI---VPN--AATFV 503 (680)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~ 503 (680)
.....|...|++++|.+.|.++.+ .+ ..+|..+..+|.+.|++++|++.+++..+.-. .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 346678899999999999887653 22 35788899999999999999999998765211 111 34566
Q ss_pred HHHHHHh-ccCCHHHHHHHHHHHHhc----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC---C----C-HHH
Q 005732 504 GVLSACV-RAGLVNEGMKIFRSMKSY----GVVP-TLEHYTCVVDLLGRSGHLHEAEEFIKDMP-IE---L----D-AVV 568 (680)
Q Consensus 504 ~ll~~~~-~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---p----~-~~~ 568 (680)
.+...|. ..|++++|++.+++..+. +..+ ...++..+...+...|++++|.+.++++. .. + . ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 469999999999987632 2111 14457788999999999999999999861 11 1 1 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch-----HHHHHHHHHh--cCCchHHHHHHHHHh
Q 005732 569 WGALLSACWFWMNMEVGERAAQKMFGLDKKPISA-----YVILSNIYAV--LGKWGKKMDIRKRLT 627 (680)
Q Consensus 569 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~~~ 627 (680)
+...+..+...|+++.|...++++.+.+|..+.. ...++.++.. .+++++|+..++++.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4455556678999999999999999999875433 3445555544 346788888876543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.8e-07 Score=72.31 Aligned_cols=107 Identities=14% Similarity=0.012 Sum_probs=78.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHHHHH
Q 005732 504 GVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGH---LHEAEEFIKDM-PIELDA---VVWGALLSAC 576 (680)
Q Consensus 504 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~~~ 576 (680)
.++..+...+++++|.+.|++....+ +.++.++..+..++.+.++ +++|+++++++ ...|++ .++..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45666777778888888888777654 3366677777777776544 44688888876 344433 3677888899
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
...|++++|+..|+++++++|++..+...+..+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999777666555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=3.7e-07 Score=76.25 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=83.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch
Q 005732 540 VVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG 617 (680)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (680)
....|.+.|++++|+..|++. ...| +...|..++.++...|++++|+..|+++++++|++..++..++.++...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 457788999999999999988 3444 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 005732 618 KKMDIRKRLTHLE 630 (680)
Q Consensus 618 ~A~~~~~~~~~~~ 630 (680)
+|.+.+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998753
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.6e-06 Score=73.31 Aligned_cols=124 Identities=9% Similarity=-0.029 Sum_probs=85.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHH
Q 005732 291 INGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMI 370 (680)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li 370 (680)
...+...|+++.|++.|+++..++..+|..+..++...|++++|++.|++..+.+ +.+...|..+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--------------p~~~~a~~~~g 77 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------KHLAVAYFQRG 77 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--------------hhhhhhHHHHH
Confidence 4556677788888888877777777777788888888888888888888887766 66777888888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC---------------hhhHHHHHHHhcccCChHHHHHHHHHHHhcC
Q 005732 371 SGYVQNNLHEKALQLYMTMRKLAIDRT---------------RSTFSVLFHACSCLGSLQQGQLLHAHLVKTP 428 (680)
Q Consensus 371 ~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 428 (680)
.+|.+.|++++|++.|++......... ..++..+..++.+.|++++|.+.+....+..
T Consensus 78 ~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 78 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888888888888888765311100 1223344445556666666666666555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.44 E-value=1.6e-06 Score=71.39 Aligned_cols=83 Identities=18% Similarity=0.084 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCeE
Q 005732 567 VVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVKKDPGCSWIELNSRV 646 (680)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (680)
.++..++.++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 467778888999999999999999999999999999999999999999999999999998764
Q ss_pred EEEecCCCCCCChhHHHHHHHHHHHHhhh
Q 005732 647 HAFSVEDRNNPNCNVIYATLEHLTANLNS 675 (680)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (680)
+|.+..+...+..+..++++
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHH
Confidence 46667777777777777654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2.7e-07 Score=72.36 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCC--CchHHHHHHHH
Q 005732 538 TCVVDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFW---MNMEVGERAAQKMFGLDKKP--ISAYVILSNIY 610 (680)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 610 (680)
..+++.+...+++++|.+.|++. .. +.++.++..++.++.+. +++++|+.+++++++.+|.+ ..++..+|.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999987 33 45789999999998764 45667999999999998876 34789999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 005732 611 AVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~ 629 (680)
.+.|++++|++.++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.9e-06 Score=72.53 Aligned_cols=113 Identities=11% Similarity=-0.005 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC-------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVV-PT-------------LEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL 564 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 564 (680)
..+......+.+.|++++|+..|++....-.. +. ..+|+.+..+|.+.|++++|+..+++. ...|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34445556777888888888888877743111 10 122333444444444444444444443 2222
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 565 -DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
++..+..++.++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.9e-06 Score=71.34 Aligned_cols=58 Identities=2% Similarity=-0.063 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005732 502 FVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM 560 (680)
Q Consensus 502 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (680)
|..+..+|.+.|++++|+..++...... +.++..+..+..+|...|++++|...|++.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 122 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV 122 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444555555555555555555433 124445555555555555555555555554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.36 E-value=0.00011 Score=66.69 Aligned_cols=225 Identities=11% Similarity=-0.042 Sum_probs=137.6
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHhcCCCchHhHHH
Q 005732 362 NPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC----LGSLQQGQLLHAHLVKTPFESNVYVGT 437 (680)
Q Consensus 362 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (680)
|+..+..|...+.+.+++++|+++|++..+.| +...+..+...|.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 35566667777777888888888888887765 33333334444332 334555555555544443
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 005732 438 SLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSH----HGLGSEAVLLFEIMLEQDIVPNAATFVGVLSAC---- 509 (680)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---- 509 (680)
+......+...+.. .++.+.|...++...+.|.. .....+...+
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC
Confidence 12222222222221 34556677777777665522 1122222222
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 005732 510 VRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WMN 581 (680)
Q Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 581 (680)
........+...+......+ +...+..|...|.. ..+...+...++......++.....+...+.. .++
T Consensus 121 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred cccchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 22445666666666665532 45556666666664 44566677777766434467777777766665 568
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 005732 582 MEVGERAAQKMFGLDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLEV 631 (680)
Q Consensus 582 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (680)
+++|+.+|+++.+.+ ++.++..|+.+|.. ..++++|.+++++..+.|.
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 999999999998875 46788899999986 4489999999999888764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=2.8e-06 Score=71.53 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 565 DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
....+..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45567778888889999999999999999999999999999999999999999999999998874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.24 E-value=8.6e-06 Score=68.20 Aligned_cols=108 Identities=7% Similarity=0.020 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSY---GVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDMPIELDAVVWGALLSAC 576 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 576 (680)
..+......+.+.|++.+|+..|++.... ....+...... ... -...+|..+..++
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~----~~~~~~~Nla~~~ 74 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKA-----------------SES----FLLAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH-----------------HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhh-----------------cch----hHHHHHHhHHHHH
Confidence 44555666677777777777777766521 11111100000 000 0012333444445
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 577 WFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 577 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.+.|++++|+..++++++++|++..++..++.+|...|++++|.+.++++.+
T Consensus 75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3e-06 Score=67.26 Aligned_cols=92 Identities=7% Similarity=0.024 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCch-------HHHHH
Q 005732 537 YTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISA-------YVILS 607 (680)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~ 607 (680)
+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667888889999999888877 3344 68889999999999999999999999999999987654 55667
Q ss_pred HHHHhcCCchHHHHHHHHHhh
Q 005732 608 NIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~ 628 (680)
.++...+++++|++.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999988764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=5.9e-06 Score=69.42 Aligned_cols=134 Identities=9% Similarity=-0.044 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 005732 466 AWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLG 545 (680)
Q Consensus 466 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 545 (680)
.+......+...|++++|+..|.++++. .+... ......... .. -+.....|..+..++.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~~----------~~~~~~~~~-------~~-~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA-------KL-QPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG-------GG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhhh----------hhhhhHHHH-------Hh-ChhhHHHHHHHHHHHH
Confidence 3445566677888888888888877641 11000 000000000 00 0123456677888999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 546 RSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
+.|++++|+..++++ ...| ++..|..++.++...|++++|+..|+++++++|+++.+...+..+..+.....++
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 5555 6889999999999999999999999999999999988888888776655444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=2.1e-05 Score=65.79 Aligned_cols=141 Identities=10% Similarity=-0.006 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHH
Q 005732 464 VAAWTALMNGYSHHGLGSEAVLLFEIMLEQ---DIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCV 540 (680)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 540 (680)
...+......+.+.|++.+|+..|++.... ...++... ......+ ...+|..+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhH
Confidence 345666778899999999999999887651 11111110 0011111 12356667
Q ss_pred HHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCch-
Q 005732 541 VDLLGRSGHLHEAEEFIKDM-PI-ELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWG- 617 (680)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~- 617 (680)
..+|.+.|++++|+..+++. .. +.+...+..++.++...|++++|+..|+++++++|+++.+...+..+....+...
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 88899999999999999887 33 4478899999999999999999999999999999999999888888887766554
Q ss_pred HHHHHHHHHhh
Q 005732 618 KKMDIRKRLTH 628 (680)
Q Consensus 618 ~A~~~~~~~~~ 628 (680)
...+++.+|.+
T Consensus 151 ~~kk~~~~~f~ 161 (168)
T d1kt1a1 151 RDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34555555554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.11 E-value=0.00084 Score=60.57 Aligned_cols=199 Identities=11% Similarity=-0.045 Sum_probs=95.9
Q ss_pred CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHH----hcccCChHHHHHHHHHHHhcCCCch
Q 005732 361 RNPVTWNSMISGYVQ----NNLHEKALQLYMTMRKLAIDRTRSTFSVLFHA----CSCLGSLQQGQLLHAHLVKTPFESN 432 (680)
Q Consensus 361 ~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~ 432 (680)
-+...+..|...|.. ..++..|...+......+. ......+... .....+.+.|...++...+.|...
T Consensus 32 g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~- 107 (265)
T d1ouva_ 32 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE- 107 (265)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-
T ss_pred CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccccccccccccchhhHHHHHHHhhhhhhhhhh-
Confidence 355555566666665 5577778888877776552 2222222222 223456677777777777665221
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 005732 433 VYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVR- 511 (680)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 511 (680)
. ...+...+.... ........+...+......+ +...+..|...+..
T Consensus 108 a--~~~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 108 G--CASLGGIYHDGK---------------------------VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAG 155 (265)
T ss_dssp H--HHHHHHHHHHCS---------------------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred H--HHhhcccccCCC---------------------------cccchhHHHHHHhhhhhccc---ccchhhhhhhhhccC
Confidence 1 111222222100 01122233333333333321 23333333333332
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 005732 512 ---AGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEAEEFIKDMPIELDAVVWGALLSACWF----WM 580 (680)
Q Consensus 512 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 580 (680)
..+...+..+++...+.| +......+...|.. ..++++|..+|++....-++..+..|+..+.. .+
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSC
T ss_pred CCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCcc
Confidence 334444444444444433 23333333333333 34566666666665222345555566665554 33
Q ss_pred CHHHHHHHHHHHHcCCCC
Q 005732 581 NMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 581 ~~~~a~~~~~~~~~~~p~ 598 (680)
+.++|..+|+++.+.++.
T Consensus 233 n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CSTTHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHCcCH
Confidence 677788888777766654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.08 E-value=1.7e-05 Score=65.05 Aligned_cols=128 Identities=9% Similarity=-0.023 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 005732 465 AAWTALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLL 544 (680)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (680)
..+......+.+.|++.+|+..|.++... .|... ............. ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~-------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN-------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh-------HHHHHHhhHHHHH
Confidence 34555667788888888888888888763 11100 0000000000000 1124667788899
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 545 GRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 545 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
.+.|++++|++.+++. ...| +...|..++.++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999987 4445 789999999999999999999999999999999998887777665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=4.2e-07 Score=91.75 Aligned_cols=110 Identities=9% Similarity=-0.088 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005732 500 ATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACW 577 (680)
Q Consensus 500 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 577 (680)
..+..+...+.+.|+.+.|...++...... ...++..++..+...|++++|...+++. ...| +...|+.|+..+.
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344444555555566666655554444211 1234445555566666666666666655 2333 3455666666666
Q ss_pred hcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh
Q 005732 578 FWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAV 612 (680)
Q Consensus 578 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (680)
..|+..+|...|.+++...|..+.++..|+.++.+
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 66666666666666666666655566666555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.0043 Score=57.02 Aligned_cols=136 Identities=11% Similarity=0.061 Sum_probs=75.2
Q ss_pred CCchHHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCC
Q 005732 251 FDESIGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQ 330 (680)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 330 (680)
|+..-...+.+.|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.+. .+..+|..+...+.+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcH
Confidence 444444556677778888888888887653 3456777777888888877776654 345577777777776655
Q ss_pred hhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 005732 331 VDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRSTFSVLFHACSC 410 (680)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 410 (680)
...+.-+ .... ..++.....++..|-..|.+++...++...... -..+...++.++..|++
T Consensus 85 ~~la~i~-----~~~~-------------~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 85 FRLAQMC-----GLHI-------------VVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHT-----TTTT-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHHh-------------hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 5443221 1111 223444556777777788888887777766432 23455566677777766
Q ss_pred cC
Q 005732 411 LG 412 (680)
Q Consensus 411 ~~ 412 (680)
.+
T Consensus 146 ~~ 147 (336)
T d1b89a_ 146 FK 147 (336)
T ss_dssp TC
T ss_pred hC
Confidence 54
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.86 E-value=3.8e-05 Score=64.49 Aligned_cols=110 Identities=9% Similarity=-0.037 Sum_probs=79.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhc--CCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005732 505 VLSACVRAGLVNEGMKIFRSMKSY--GVVPTLEHYTCVVDLLGRSGHL-HEAEEFIKDMPIELDAVVWGALLSACWFWMN 581 (680)
Q Consensus 505 ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 581 (680)
........|++++|.+.|.+.... |...... ..+.+ .....-++. .....+..++.++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~----------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL----------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG----------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC----------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 344667789999999999888853 2110000 00111 000011111 123456778888999999
Q ss_pred HHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhh
Q 005732 582 MEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTH 628 (680)
Q Consensus 582 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (680)
+++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.82 E-value=2.9e-05 Score=59.60 Aligned_cols=89 Identities=8% Similarity=0.024 Sum_probs=70.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHhcc--C-ChhHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChh
Q 005732 288 NSLINGLISMGRIEDAELIFNRLTE--A-NSISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPV 364 (680)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (680)
......+.+.|++++|...|++... | +..+|..+..++.+.|++++|+..|++..+.+ |.+..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~ 85 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------PKDIA 85 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc--------------ccccc
Confidence 3456667777888888888888766 4 45678888888888888888888888887766 66788
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 005732 365 TWNSMISGYVQNNLHEKALQLYMTMR 390 (680)
Q Consensus 365 ~~~~li~~~~~~~~~~~A~~~~~~m~ 390 (680)
.|..+..+|...|++++|++.|++..
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88888888888999999988888753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.012 Score=54.04 Aligned_cols=288 Identities=10% Similarity=0.073 Sum_probs=133.4
Q ss_pred cCccchhhHHHHHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 005732 15 ETLIVSTNKAITECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVC 94 (680)
Q Consensus 15 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~ 94 (680)
.||..--..++.-|-+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+.. +..+|..+...|
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence 35555556677777788888888888765433 6667777777888888777765442 455666666666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhc
Q 005732 95 AQLNSLIDGKQIHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFI 174 (680)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 174 (680)
........+ .+.......++.....++..|-..|.+++...+++.....
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-------------------------- 128 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-------------------------- 128 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------------------------
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--------------------------
Confidence 655544322 1122222333444445566666666666666666654221
Q ss_pred cCCCCCeeeHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch
Q 005732 175 KMPKKDVVVWTKLISGYAKSVDGCEKALKLFRWMRESGENMPNEYTFDSVIRACARLGAFCEGKVVHGLLIKCGFEFDES 254 (680)
Q Consensus 175 ~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 254 (680)
...+...++.++..+++.+ .++..+.+... + +..-...++..|.+.+-++++.-++
T Consensus 129 --~~~~~~~~~~L~~lyak~~--~~kl~e~l~~~---s----~~y~~~k~~~~c~~~~l~~elv~Ly------------- 184 (336)
T d1b89a_ 129 --ERAHMGMFTELAILYSKFK--PQKMREHLELF---W----SRVNIPKVLRAAEQAHLWAELVFLY------------- 184 (336)
T ss_dssp --TTCCHHHHHHHHHHHHTTC--HHHHHHHHHHH---S----TTSCHHHHHHHHHTTTCHHHHHHHH-------------
T ss_pred --CccchHHHHHHHHHHHHhC--hHHHHHHHHhc---c----ccCCHHHHHHHHHHcCChHHHHHHH-------------
Confidence 1234455677777777653 35554444333 1 2233345566666655555444333
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhhcCCCccchhhHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHHHHhccCChhhH
Q 005732 255 IGGALIEFYCGCEAFDGAMRVYDRLENPCLNASNSLINGLISMGRIEDAELIFNRLTEANSISYNSMIKGYAVYGQVDDS 334 (680)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 334 (680)
.+.|+++.|..+.-.-. ++..-....+..+.+.++.+...+++....+-++...+.++......-+..+.
T Consensus 185 ---------~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~ 254 (336)
T d1b89a_ 185 ---------DKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRA 254 (336)
T ss_dssp ---------HHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHH
T ss_pred ---------HhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHH
Confidence 33444444433322211 11111123333444444444333333333222223334444444444444444
Q ss_pred HHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHH
Q 005732 335 KRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEK 381 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 381 (680)
.+.+++-..-.. ...++.... ...+....+++...|...++++.
T Consensus 255 V~~~~k~~~l~l--i~p~Le~v~-~~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 255 VNYFSKVKQLPL--VKPYLRSVQ-NHNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHTTCTTT--THHHHHHHH-TTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCcHH--HHHHHHHHH-HcChHHHHHHHHHHHhCcchhHH
Confidence 444443322110 000000000 02245678889999999888654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=4.1e-05 Score=56.52 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=54.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 005732 539 CVVDLLGRSGHLHEAEEFIKDM----P----IELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNI 609 (680)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 609 (680)
.++..+.+.|++++|...|++. + ..++ ..++..++.++.+.|++++|+..++++++++|+++.++..+...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4555666666666666666554 0 1222 66788899999999999999999999999999998888887654
Q ss_pred H
Q 005732 610 Y 610 (680)
Q Consensus 610 ~ 610 (680)
.
T Consensus 90 ~ 90 (95)
T d1tjca_ 90 E 90 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=5.9e-05 Score=55.64 Aligned_cols=65 Identities=17% Similarity=0.006 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC-------CchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 565 DAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP-------ISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
++..+..++..+.+.|++++|+..++++++..|.+ +.++..++.++.+.|++++|++.++++.+.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 45556678889999999999999999999876554 346889999999999999999999999875
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.74 E-value=3.5e-05 Score=62.29 Aligned_cols=124 Identities=10% Similarity=-0.045 Sum_probs=70.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPN-AATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE 552 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (680)
|-+.+.+++|+..|+...+ +.|+ ...+..+..++...+++..+.+ ..+.+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~ 59 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHH
Confidence 3445567777777777776 3344 4555555555543322211111 1122334
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHH
Q 005732 553 AEEFIKDM-PIEL-DAVVWGALLSACWFW-----------MNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKK 619 (680)
Q Consensus 553 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (680)
|++.+++. .+.| +...|..++.++... +++++|.+.|+++++++|++...+..|+... .|
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka 132 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KA 132 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------TH
T ss_pred HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HH
Confidence 44444443 2233 344555555554433 3478899999999999999976666666553 56
Q ss_pred HHHHHHHhhCCC
Q 005732 620 MDIRKRLTHLEV 631 (680)
Q Consensus 620 ~~~~~~~~~~~~ 631 (680)
.+++.+..++|+
T Consensus 133 ~~~~~e~~k~~~ 144 (145)
T d1zu2a1 133 PQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHHhc
Confidence 667766666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.72 E-value=6.2e-05 Score=61.86 Aligned_cols=64 Identities=19% Similarity=0.095 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC-----------CchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 566 AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP-----------ISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
...|+.+..++...|++++|...+++++++.|.. ..++..++.+|...|++++|.+.+++..+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888889999999999999988764431 225788999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=8e-06 Score=82.09 Aligned_cols=202 Identities=9% Similarity=-0.062 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCCCchHhHHHH--HHHHHHhcCChHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005732 415 QQGQLLHAHLVKTPFESNVYVGTS--LVDMYSRCGSINDAQASFSSISS---PNVAAWTALMNGYSHHGLGSEAVLLFEI 489 (680)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 489 (680)
..+.+.++...+....++..-... ....+...+.++.|+..++...+ ++...+..+...+.+.|+.+.|...+..
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 145 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSS 145 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCH
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHH
Confidence 445566666555433333222221 12223345667888877776654 4556777788888899999999988877
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHH
Q 005732 490 MLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM--PIELDAV 567 (680)
Q Consensus 490 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~ 567 (680)
.... .| ..++..+...+...|++++|...|++..+.. +.+...|+.|...+...|+..+|+..|.+. -.+|-+.
T Consensus 146 al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~ 221 (497)
T d1ya0a1 146 SCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Confidence 6652 22 3567788889999999999999999999764 345788999999999999999999999987 3456788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 568 VWGALLSACWFWMNMEVGERAAQKMFGLDKKP---ISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 568 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
.+..|...+.+..+..++ .+..+.. ...+..+...+...+.+++..++.+++.
T Consensus 222 a~~nL~~~~~~~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 222 ASTNLQKALSKALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HHHHHHHHHHHHTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 888888776543221100 0111111 1134455556667777777666655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00021 Score=56.08 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 005732 468 TALMNGYSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMK 526 (680)
Q Consensus 468 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 526 (680)
..+...+.+.|++++|+..|.+.++.+. .+...+..+..+|.+.|++++|++.++++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3455566666666666666666666321 135556666666666666666666666655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.64 E-value=2e-05 Score=63.86 Aligned_cols=86 Identities=9% Similarity=-0.028 Sum_probs=63.3
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 005732 544 LGRSGHLHEAEEFIKDM-PIEL-DAVVWGALLSACWF----------WMNMEVGERAAQKMFGLDKKPISAYVILSNIYA 611 (680)
Q Consensus 544 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (680)
|.+.+.+++|.+.++.. ...| ++..+..++.++.. .+.+++|+..|+++++++|+++.+|..+|.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34455566666666665 2333 56666666665543 345689999999999999999999999999998
Q ss_pred hcCC-----------chHHHHHHHHHhhC
Q 005732 612 VLGK-----------WGKKMDIRKRLTHL 629 (680)
Q Consensus 612 ~~g~-----------~~~A~~~~~~~~~~ 629 (680)
..|+ +++|.+.+++..+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 8764 67888888888764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.047 Score=52.93 Aligned_cols=263 Identities=7% Similarity=-0.085 Sum_probs=126.1
Q ss_pred HHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChh
Q 005732 320 SMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLAIDRTRS 399 (680)
Q Consensus 320 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 399 (680)
..+..+.+.+++......+.. .+.+...-.....+....|+.+.|...+..+-..|..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~------------------~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~---- 134 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPE------------------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS---- 134 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS------------------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC----
T ss_pred HHHHHHHhccCHHHHHHhccC------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----
Confidence 345566677777665554432 1445555566777788888888888877776554421
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHHHHHhcCChHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 005732 400 TFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVDMYSRCGSINDAQASFSSISSPNVAAWTALMNGYSHHGL 479 (680)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 479 (680)
..+.+..++..+.+.| ..+...+-.-+......|+...|..+...+...........+.....
T Consensus 135 -------------~p~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~--- 197 (450)
T d1qsaa1 135 -------------QPNACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN--- 197 (450)
T ss_dssp -------------CCTHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---
T ss_pred -------------CchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---
Confidence 1122233444444443 23333333334445555667777766666554443333333333222
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHHhcCChHHH
Q 005732 480 GSEAVLLFEIMLEQDIVPNAATFVGVLSACVR--AGLVNEGMKIFRSMKSYGVVPTLEHYT----CVVDLLGRSGHLHEA 553 (680)
Q Consensus 480 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A 553 (680)
...+.... .. ..++......+..++.+ ..+.+.|..++......... +..-+. .+...+...+..+.+
T Consensus 198 p~~~~~~~---~~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a 271 (450)
T d1qsaa1 198 PNTVLTFA---RT--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQ 271 (450)
T ss_dssp GGGHHHHH---HH--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHH
T ss_pred hHhHHHHH---hc--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHH
Confidence 22222111 11 11222222222222222 24566666666665532211 111111 111222234455555
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHh
Q 005732 554 EEFIKDM-PIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLT 627 (680)
Q Consensus 554 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (680)
...+... ....+.......+......+++..+...++.+-......+...+-++..+...|+.++|...+..+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 272 AKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 5555544 1223333333344444455666666666655433222223445666666777777777766666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.42 E-value=0.00023 Score=63.72 Aligned_cols=127 Identities=9% Similarity=-0.079 Sum_probs=84.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVP-NAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHE 552 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (680)
..+.|++++|+..+++.++.. | |...+..+...++..|++++|.+.++...+.... +...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHH
Confidence 346788999999999988853 4 5778888888899999999999999988865322 34444444455544444444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 553 AEEFIKDM--PIELD-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 553 A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
+..-.... ...|+ ...+...+..+...|+.++|...++++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 33322221 12232 33334445556778999999999999999988876654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.32 E-value=0.00056 Score=57.10 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH----
Q 005732 316 ISYNSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRK---- 391 (680)
Q Consensus 316 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---- 391 (680)
..+..+..++...|++++|...++++...+ +.+...|..++.+|.+.|+..+|++.|+++..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--------------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~ 133 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH--------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 133 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888887776 67778888888888888888888888887643
Q ss_pred -CCCCCChhh
Q 005732 392 -LAIDRTRST 400 (680)
Q Consensus 392 -~~~~p~~~~ 400 (680)
.|+.|+..+
T Consensus 134 eLG~~P~~~l 143 (179)
T d2ff4a2 134 DLGIDPGPTL 143 (179)
T ss_dssp HHSCCCCHHH
T ss_pred HhCCCcCHHH
Confidence 467776544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.20 E-value=0.0017 Score=52.89 Aligned_cols=64 Identities=9% Similarity=-0.114 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Q 005732 536 HYTCVVDLLGRSGHLHEAEEFIKDM--------PIELD-----AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKP 599 (680)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 599 (680)
+|+.+..+|...|++++|.+.+++. ...++ ...+..++.++...|++++|+..|++++++.|+.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4555556666666666665555543 11221 2356778888999999999999999999987654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.11 E-value=0.00024 Score=63.61 Aligned_cols=121 Identities=9% Similarity=0.064 Sum_probs=88.4
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 005732 509 CVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEAEEFIKDM-PIELD-AVVWGALLSACWFWMNMEVGE 586 (680)
Q Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~ 586 (680)
..+.|++++|+..+++.++.. +.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 456799999999999999765 447889999999999999999999999988 45664 555555555555454444443
Q ss_pred HHHHHHHc-CCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 005732 587 RAAQKMFG-LDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 587 ~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (680)
........ .+|++...+...+..+...|++++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 33222222 223333445666788899999999999999988754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.15 Score=49.17 Aligned_cols=259 Identities=11% Similarity=-0.013 Sum_probs=139.5
Q ss_pred HHhhcCCChhHHHHhhccCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHH
Q 005732 26 TECGRNGQLVTARNLFDQMPIRTVVSWNTMLCGYSKWAKFDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQ 105 (680)
Q Consensus 26 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~ 105 (680)
..+.+.++++.....+...+ .+...-.....+....|+...|...+..+...|.. .+.....+
T Consensus 80 ~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l--------------- 142 (450)
T d1qsaa1 80 NELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKL--------------- 142 (450)
T ss_dssp HHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHH---------------
T ss_pred HHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHH---------------
Confidence 34455555555544443222 13333334455555566666665555555444311 11112222
Q ss_pred HHHHHHHhCCCCcchhhhhHHHHHHcCCChHHHHHHHhhhcCCchhHHHHHHHHHHhcCChhhHHHHhccCCCCCeeeHH
Q 005732 106 IHCLVLKSGYECFEFVGSGLLFFYANCFEIEEAKRVFDELHEDNELLWSLMLVGYVQCNLMSDAFDVFIKMPKKDVVVWT 185 (680)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 185 (680)
+..+.+.| ..+...+-..+......|+...|..+...+...........+........+. ....... .+.....
T Consensus 143 -~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~---~~~~~~~-~~~~~~~ 216 (450)
T d1qsaa1 143 -FSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVL---TFARTTG-ATDFTRQ 216 (450)
T ss_dssp -HHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHH---HHHHHSC-CCHHHHH
T ss_pred -HHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHH---HHHhcCC-CChhhhH
Confidence 22222222 2233333345555666678888888877766555444555555443333332 2222222 2222222
Q ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHcCCCCCCcchHHHHH----HHHhccCChhhHHHHHHHHHHhCCCCCchHHHHH
Q 005732 186 KLISGYAK--SVDGCEKALKLFRWMRESGENMPNEYTFDSVI----RACARLGAFCEGKVVHGLLIKCGFEFDESIGGAL 259 (680)
Q Consensus 186 ~ll~~~~~--~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 259 (680)
.+..++.+ ..+ .+.+..++......... +......+- ......+..+.+...+......+ .+.....-.
T Consensus 217 ~~~~~l~rla~~d-~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~ 291 (450)
T d1qsaa1 217 MAAVAFASVARQD-AENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR 291 (450)
T ss_dssp HHHHHHHHHHHHC-HHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred HHHHHHHHHhccC-hhHHHHHHHhhhhcccc--cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHH
Confidence 22222222 134 78888888887765433 222222222 22234566677777777665553 344444556
Q ss_pred HHHhhcCCCHHHHHHHHhhcCC---CccchhhHHHHHHHhcCCHHHHHHHHHHhcc
Q 005732 260 IEFYCGCEAFDGAMRVYDRLEN---PCLNASNSLINGLISMGRIEDAELIFNRLTE 312 (680)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 312 (680)
+......+++..+...++.+.+ ....+..-+..++...|+.+.|...|.....
T Consensus 292 ~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 6666778999999999998872 2234456678899999999999999998876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.67 E-value=0.0052 Score=46.20 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 005732 564 LDAVVWGALLSACWFW---MNMEVGERAAQKMFGLDKKP-ISAYVILSNIYAVLGKWGKKMDIRKRLTHL 629 (680)
Q Consensus 564 p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (680)
|+..+-....+++.++ .+.++|+.+++++++.+|.+ ...++.|+.+|.+.|++++|.+.++++++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4455555555555543 23456666666666666544 245566666666666666666666666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.25 E-value=0.063 Score=39.56 Aligned_cols=141 Identities=10% Similarity=0.000 Sum_probs=98.8
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005732 474 YSHHGLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGRSGHLHEA 553 (680)
Q Consensus 474 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (680)
+.-.|..++..+++.+.... .+..-|+-++--....-+-+...+.++.+=+ ..| ...++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHH
Confidence 34567788888888887763 2455566666555555555555555554432 111 2234555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 005732 554 EEFIKDMPIELDAVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAYVILSNIYAVLGKWGKKMDIRKRLTHLEVK 632 (680)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 632 (680)
...+-.+. .+...++..+..+..+|.-++-..+++.+++.+.-+|+....++.+|.+.|...++.+++.+.=++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 55555553 345566777788889999999999999988877777899999999999999999999999999888864
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.93 E-value=0.028 Score=43.63 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHhhCC
Q 005732 580 MNMEVGERAAQKMFGLDKKPISAYVILSNIYAV----LGKWGKKMDIRKRLTHLE 630 (680)
Q Consensus 580 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 630 (680)
.|.++|..+|+++.+.+ ++.+...|+.+|.. ..+.++|.+++++..+.|
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 45666777777766543 34556666666665 346667777777766655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.92 E-value=0.13 Score=37.81 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHHHHHhccCChhhHHHHHhhcCcCCcchhhhHhhhcccCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005732 319 NSMIKGYAVYGQVDDSKRLFEKMPHRSIISLNTMISVIPEMERNPVTWNSMISGYVQNNLHEKALQLYMTMRKLA 393 (680)
Q Consensus 319 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 393 (680)
...+..+..+|+-+...+++..+.+.+ ++++...-.+..+|-+.|...++-+++.+.-+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~--------------~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN--------------EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C--------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 334444455555555555555544433 4445555555555555555555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.57 E-value=0.1 Score=40.30 Aligned_cols=113 Identities=9% Similarity=-0.070 Sum_probs=78.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 005732 478 GLGSEAVLLFEIMLEQDIVPNAATFVGVLSACVRAGLVNEGMKIFRSMKSYGVVPTLEHYTCVVDLLGR----SGHLHEA 553 (680)
Q Consensus 478 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 553 (680)
.++++|+++|++..+.|- |. ....|. .....+.++|.+++++..+.| ++.....|...|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 357788888888888762 22 222232 344567889999998888766 44555556666654 4578899
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCC
Q 005732 554 EEFIKDMPIELDAVVWGALLSACWF----WMNMEVGERAAQKMFGLDKK 598 (680)
Q Consensus 554 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 598 (680)
.++|++....-++.....|...|.. ..|.++|..+|+++.+.+..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 9999987434456666777777665 46899999999998877654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.14 Score=38.20 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCchH
Q 005732 532 PTLEHYTCVVDLLGRSG---HLHEAEEFIKDM-PIEL-D-AVVWGALLSACWFWMNMEVGERAAQKMFGLDKKPISAY 603 (680)
Q Consensus 532 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 603 (680)
++..+--.+..++.++. +..+++.++++. ...| + ...+..|..+|.+.|++++|..+++++++.+|++..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 44444444555555543 345667777665 2233 3 35667788889999999999999999999999996554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.57 E-value=2.7 Score=29.08 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcchhhhhHH
Q 005732 65 FDESLSLVSTMHRSNVKLNETTFSTILSVCAQLNSLIDGKQIHCLVLKSGYECFEFVGSGLL 126 (680)
Q Consensus 65 ~~~a~~~~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (680)
.=++..-++.+....+-|++....+.+++|.+.+|+..|.++++.+.... .++..+|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 33556666677777788888888888888888888888888888776432 22334444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.50 E-value=6.3 Score=27.25 Aligned_cols=63 Identities=6% Similarity=0.005 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHhcCCCchHhHHHHHHH
Q 005732 378 LHEKALQLYMTMRKLAIDRTRSTFSVLFHACSCLGSLQQGQLLHAHLVKTPFESNVYVGTSLVD 441 (680)
Q Consensus 378 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 441 (680)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++... .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 344666667777777888899889999999999999999999888877543 223445555443
|